Citrus Sinensis ID: 017347

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
Protein Sequence
MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEVF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEcccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccEEEHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccEEEccccEEEEEEEcccccEEEEEcccccccccHHEEEccccccccEEEcc
Coil and Loop (DISEMBL)
MEAIRKQATKLREQVARQQQAVFKqfggggyggsdnvvtdeaELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKlsedsrkygsdntctsgnTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAkvretpgnpdlaLKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERqrieaaptaptpsvdtmppppayeevngiyasqthngstdAMGYFLGEvvhpyqaesdveltLSVGDYVVVRKVtnngwaegeckgkagwfpfgyiERRDRVLASKMAEVF
Flexible Loop (DISEMBL)
MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVegyivtgskqveigtklsedsrkygsdntctsgntlSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIevskrqakvretpgnpdlaLKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIeaaptaptpsvdtmPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTnngwaegeckgkagwfpfgyIERRDRVLASKMAEVF
Low Complexity Region (SEG)
MEAIRKQATKLREQVARQQQAVFKQFggggyggSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEaaaamaaVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAptpsvdtmppppAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEVF
Disordered region (IsUnstruct)
************************************************RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEI********************************************LKALGTQVAEPLRAMVLGAP**********************************************AAEVKLHDLKSNMAILGKEAAAAMAAVE**QQRLTLQRLIAMVEAERTYHQRVLQILDQL***********************************GIYAS**HNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL********
Disordered Region (DISOPRED)
***************A***********************DEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN*****NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG**********************************************************************************************************************************************************TDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR************
Disordered Region (DISEMBL)
****************RQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE*************RLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIE**********DTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEVF
Disordered Region (DISPRO)
*EAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSE******************************************MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAKVRETPGNPDLALKxxxxxxxxxxxxxxxxxxxxxAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	373	2.2.26 [Sep-21-2011]
Q99963	347	Endophilin-A3 OS=Homo sap	yes	no	0.340	0.365	0.257	1e-07
Q2KJB5	505	Nostrin OS=Bos taurus GN=	yes	no	0.174	0.128	0.424	9e-07
Q8AXV0	367	Endophilin-A2 OS=Gallus g	yes	no	0.345	0.351	0.24	1e-06
O35180	347	Endophilin-A3 OS=Rattus n	yes	no	0.335	0.360	0.246	5e-06
O35964	368	Endophilin-A2 OS=Rattus n	no	no	0.340	0.345	0.222	6e-06
Q99961	368	Endophilin-A2 OS=Homo sap	no	no	0.340	0.345	0.254	7e-06
Q99962	352	Endophilin-A1 OS=Homo sap	no	no	0.340	0.360	0.240	9e-06
Q4R729	692	SH3 domain-containing pro	N/A	no	0.152	0.082	0.417	1e-05
Q2KJA1	368	Endophilin-A2 OS=Bos taur	no	no	0.335	0.339	0.264	1e-05
Q62421	347	Endophilin-A3 OS=Mus musc	yes	no	0.335	0.360	0.253	1e-05

>sp|Q99963|SH3G3_HUMAN Endophilin-A3 OS=Homo sapiens GN=SH3GL3 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 230 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVN 289
           + +L   +EA   YH++  +IL +L+ ++   + RI AA + P       P   +  E+N
Sbjct: 212 VSQLAVFIEAALDYHRQSTEILQELQSKL---QMRISAASSVPRREYKPRPVKRSSSELN 268

Query: 290 GIYASQT--HNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK 347
           G+  +      GS   M       ++ ++ E+  EL    GD + +    +  W EG   
Sbjct: 269 GVSTTSVVKTTGSNIPMDQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH 328

Query: 348 GKAGWFPFGYIE 359
           G++G+FP  Y+E
Sbjct: 329 GESGFFPINYVE 340

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.
Homo sapiens (taxid: 9606)

>sp|Q2KJB5|NOSTN_BOVIN Nostrin OS=Bos taurus GN=NOSTRIN PE=1 SV=1

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 294 SQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWF 353
           S T +G T  +G  L + ++P+QA  D EL L  GD V + K  + GW  G  KGK G F
Sbjct: 428 SSTASGVTQ-LGNGLCKALYPFQARQDDELDLEKGDIVTIHKKKDEGWWFGSLKGKKGHF 486

Query: 354 PFGYIE 359
           P  Y+E
Sbjct: 487 PAAYVE 492

Multivalent adapter protein which may decrease NOS3 activity by inducing its translocation away from the plasma membrane.

Bos taurus (taxid: 9913)

>sp|Q8AXV0|SH3G1_CHICK Endophilin-A2 OS=Gallus gallus GN=SH3GL1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 21/150 (14%)

Query: 230 LQRLIAMVEAERTYHQRVLQILDQLEGEM------LSERQRIEAAPTAPTPSVD------ 277
           + +L A+V+A+  YH++ +QILD+L  ++       S R R E  P  P  + D      
Sbjct: 212 VSQLSALVDAQLDYHRQAVQILDELAEKLKRRMREASSRPRREYKP-KPRETYDFGESDQ 270

Query: 278 -----TMPPPPAYEEVNGIYASQTHNGSTDAMGYF---LGEVVHPYQAESDVELTLSVGD 329
                +  P P     +   + +    S  ++ +      + ++ ++ E+D EL    GD
Sbjct: 271 SNGGFSCTPTPKVSASSSFRSDKPFRTSVRSIPHLDQPCCKALYDFEPENDGELGFKEGD 330

Query: 330 YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            + +    +  W EG   G++G+FP  Y+E
Sbjct: 331 IITLTNQIDENWYEGMINGQSGFFPLNYVE 360

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Gallus gallus (taxid: 9031)

>sp|O35180|SH3G3_RAT Endophilin-A3 OS=Rattus norvegicus GN=Sh3gl3 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 230 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPP--PAYEE 287
           + +L   VEA   YH++  +IL +L+ ++      +  A  +  P  D MP P   +   
Sbjct: 212 VSQLAVFVEAALDYHRQSTEILQELQNKL-----ELRIALASQVPRRDYMPKPVNTSSTN 266

Query: 288 VNGIYASQTH--NGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE 345
            NG+  S +    G+           ++ ++ E++ EL    GD + +    +  W EG 
Sbjct: 267 ANGVEPSSSSKLTGTDIPSDQPCCRGLYDFEPENEGELGFKEGDIITLTNQIDENWYEGM 326

Query: 346 CKGKAGWFPFGYIE 359
            +G++G+FP  Y+E
Sbjct: 327 LRGESGFFPINYVE 340

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Rattus norvegicus (taxid: 10116)

>sp|O35964|SH3G1_RAT Endophilin-A2 OS=Rattus norvegicus GN=Sh3gl1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 26/153 (16%)

Query: 230 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPP----AY 285
           + +L A+V+A+  YH++ +QIL++L  ++   ++R+  A + P       P  P      
Sbjct: 212 VSQLSALVDAQLDYHRQAVQILEELADKL---KRRVREASSRPRREFKPRPQEPFELGEL 268

Query: 286 EEVNGIYASQTHNGSTDAMGYFLGE-------------------VVHPYQAESDVELTLS 326
           E+ NG +   +    T +  +  G+                    ++ ++ E+D EL   
Sbjct: 269 EQPNGGFPCASAPKITASSSFRSGDKPTRTPSKSMPPLDQPSCKALYDFEPENDGELGFR 328

Query: 327 VGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            GD + +    +  W EG   G++G+FP  Y++
Sbjct: 329 EGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQ 361

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Rattus norvegicus (taxid: 10116)

>sp|Q99961|SH3G1_HUMAN Endophilin-A2 OS=Homo sapiens GN=SH3GL1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 26/153 (16%)

Query: 230 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPP----AY 285
           + +L A+V+A+  YH++ +QILD+L  ++   ++R+  A + P       P  P      
Sbjct: 212 VSQLSALVDAQLDYHRQAVQILDELAEKL---KRRMREASSRPKREYKPKPREPFDLGEP 268

Query: 286 EEVNG---------IYAS----------QTHNGSTDAMGYFLGEVVHPYQAESDVELTLS 326
           E+ NG         I AS          +T + S   +     + ++ ++ E+D EL   
Sbjct: 269 EQSNGGFPCTTAPKIAASSSFRSSDKPIRTPSRSMPPLDQPSCKALYDFEPENDGELGFH 328

Query: 327 VGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            GD + +    +  W EG   G++G+FP  Y+E
Sbjct: 329 EGDVITLTNQIDENWYEGMLDGQSGFFPLSYVE 361

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Homo sapiens (taxid: 9606)

>sp|Q99962|SH3G2_HUMAN Endophilin-A1 OS=Homo sapiens GN=SH3GL2 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 230 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPT---APTPSVDTMPPPPAYE 286
           + +L A+V+A+  YH++ +QIL Q+   +    ++  + P     P P +    P     
Sbjct: 212 VSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQPRREYQPKPRMSLEFPTGDST 271

Query: 287 EVNGIYASQTHNGSTDAMGYFLGE----VVHPYQAESDVELTLSVGDYVVVRKVTNNGWA 342
           + NG     +H G+    G  + +     ++ ++ E++ EL    GD + +    +  W 
Sbjct: 272 QPNG---GLSHTGTPKPSGVQMDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWY 328

Query: 343 EGECKGKAGWFPFGYIE 359
           EG   G +G+FP  Y+E
Sbjct: 329 EGMLHGHSGFFPINYVE 345

Implicated in synaptic vesicle endocytosis. May recruit other proteins to membranes with high curvature.

Homo sapiens (taxid: 9606)

>sp|Q4R729|SH321_MACFA SH3 domain-containing protein 21 OS=Macaca fascicularis GN=SH3D21 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 10/67 (14%)

Query: 302 DAMGYFLGEVVHP--------YQAESDVELTLSVGDYV-VVRKVT-NNGWAEGECKGKAG 351
           D+   +L  V HP        YQ E+  ELTL  GD V V+ K T + GW EGEC+G+ G
Sbjct: 55  DSPPDYLQTVSHPEAYRVLFDYQPEAPDELTLRRGDVVKVLSKTTEDKGWWEGECQGRRG 114

Query: 352 WFPFGYI 358
            FP  ++
Sbjct: 115 VFPDNFV 121

Macaca fascicularis (taxid: 9541)

>sp|Q2KJA1|SH3G1_BOVIN Endophilin-A2 OS=Bos taurus GN=SH3GL1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 30/155 (19%)

Query: 230 LQRLIAMVEAERTYHQRVLQILDQLEGEM------LSERQRIEAAPTAPTPSVDTMPPPP 283
           + +L A+V+A+  YH++ +QILD+L  ++       S R + E  P  P   +D   P  
Sbjct: 212 VSQLSALVDAQLDYHRQAVQILDELADKLKRRMREASSRPKREYKPK-PRELLDLGEP-- 268

Query: 284 AYEEVNG---------IYAS----------QTHNGSTDAMGYFLGEVVHPYQAESDVELT 324
             E+ NG         I AS          +T + S   +     + ++ ++ E+D EL 
Sbjct: 269 --EQSNGGFPCAAAPKITASSSFRSSDKPVRTPSRSMPPLDQPSCKALYDFEPENDGELG 326

Query: 325 LSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
              GD + +    +  W EG   G++G+FP  Y+E
Sbjct: 327 FHEGDIITLTNQIDENWYEGMLDGQSGFFPLSYVE 361

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Bos taurus (taxid: 9913)

>sp|Q62421|SH3G3_MOUSE Endophilin-A3 OS=Mus musculus GN=Sh3gl3 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 230 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPP--AYEE 287
           + +L   VEA   YH++  +IL +L+ ++     RI  A  +  P  + MP P   +  +
Sbjct: 212 VSQLAVFVEAALDYHRQSTEILQELQSKL---ELRISLA--SKVPKREFMPKPVNMSSTD 266

Query: 288 VNGIYASQTHN--GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE 345
            NG+  S +    G+           ++ ++ E++ EL    GD + +    +  W EG 
Sbjct: 267 ANGVGPSSSSKTPGTDTPADQPCCRGLYDFEPENEGELGFKEGDIITLTNQIDENWYEGM 326

Query: 346 CKGKAGWFPFGYIE 359
            +G++G+FP  Y+E
Sbjct: 327 LRGESGFFPINYVE 340

Implicated in endocytosis. May recruit other proteins to membranes with high curvature.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
255543841	371	clathrin binding protein, putative [Rici	0.991	0.997	0.877	0.0
449464848	375	PREDICTED: uncharacterized protein LOC10	1.0	0.994	0.869	0.0
357467415	371	Neutrophil cytosol factor [Medicago trun	0.991	0.997	0.858	0.0
224080426	372	predicted protein [Populus trichocarpa]	0.991	0.994	0.861	0.0
356508236	371	PREDICTED: uncharacterized protein LOC10	0.991	0.997	0.863	0.0
224103333	371	predicted protein [Populus trichocarpa]	0.991	0.997	0.877	0.0
363808378	365	uncharacterized protein LOC100783004 [Gl	0.975	0.997	0.866	1e-179
225458099	368	PREDICTED: uncharacterized protein LOC10	0.983	0.997	0.802	1e-175
225427740	371	PREDICTED: uncharacterized protein LOC10	0.994	1.0	0.841	1e-175
357473515	372	Rho guanine nucleotide exchange factor [	0.991	0.994	0.848	1e-174

>gi|255543841|ref|XP_002512983.1| clathrin binding protein, putative [Ricinus communis] gi|223547994|gb|EEF49486.1| clathrin binding protein, putative [Ricinus communis]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/374 (87%), Positives = 354/374 (94%), Gaps = 4/374 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVARQQQAV KQFG  GYGG+D V+TDEAELHQHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQATKLREQVARQQQAVLKQFGASGYGGADGVITDEAELHQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTG+KQVEIGTKLSED RKYG++NTCTSGNTLSKAAL+Y RARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGAKQVEIGTKLSEDCRKYGAENTCTSGNTLSKAALNYERARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+G PL+DARHLAQRYDRMRQEAEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGTPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PG+P+LA+KL+AAE KL DLKSNMA+LGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REMPGSPELAMKLEAAESKLQDLKSNMAVLGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSV-DTMPPPPAYEEVNGIYASQTHNG 299
           R YHQRVLQILDQLE EM+SERQRIEA    P PSV ++MPPPP+YEEVNG+YASQ+HNG
Sbjct: 241 RAYHQRVLQILDQLESEMISERQRIEA---PPPPSVENSMPPPPSYEEVNGVYASQSHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           STD MGYFLGEV+H YQAES+VELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE
Sbjct: 298 STDGMGYFLGEVIHSYQAESNVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 357

Query: 360 RRDRVLASKMAEVF 373
           RR+RVLASK+AEVF
Sbjct: 358 RRERVLASKIAEVF 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464848|ref|XP_004150141.1| PREDICTED: uncharacterized protein LOC101205534 [Cucumis sativus] gi|449520605|ref|XP_004167324.1| PREDICTED: uncharacterized protein LOC101227373 [Cucumis sativus]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/375 (86%), Positives = 355/375 (94%), Gaps = 2/375 (0%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           M+AIRKQATKLREQVARQQQAV KQFG GGYGGSDN++TDEAELHQHQ+LE+LYISTRAG
Sbjct: 1   MDAIRKQATKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG++NTCTSG+TLSKAAL+YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSKAALNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGN+LKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEV KRQA+V
Sbjct: 121 MEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVFKRQARV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PGN ++ +KL+AAE KLHDLKSNMA +GKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REAPGNAEITVKLEAAEAKLHDLKSNMATMGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEA-APTAPTPSVD-TMPPPPAYEEVNGIYASQTHN 298
           R YHQRVLQILDQLEGEM+ ERQRIEA     P PS+D +MPPPP+YEEVNG++ASQ HN
Sbjct: 241 RAYHQRVLQILDQLEGEMILERQRIEAPPTPPPGPSIDNSMPPPPSYEEVNGVFASQAHN 300

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GSTDAMGYFLGEV+HPY AESDVEL LSVGDYVVVRKV+NNGWAEGECKGKAGWFPFGYI
Sbjct: 301 GSTDAMGYFLGEVMHPYLAESDVELNLSVGDYVVVRKVSNNGWAEGECKGKAGWFPFGYI 360

Query: 359 ERRDRVLASKMAEVF 373
           ERR+RVLASK+AEVF
Sbjct: 361 ERRERVLASKVAEVF 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467415|ref|XP_003603992.1| Neutrophil cytosol factor [Medicago truncatula] gi|355493040|gb|AES74243.1| Neutrophil cytosol factor [Medicago truncatula]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/374 (85%), Positives = 349/374 (93%), Gaps = 4/374 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS+NTCTSG+TLS+AAL+Y  ARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTSGSTLSRAALNYAHARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQ+AEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN +  +KL+AAE KL DLKSNMAILGKEAAAAM AVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RETPGNAENTMKLEAAETKLQDLKSNMAILGKEAAAAMTAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQTHNG 299
           R YHQRVLQILD LEGEM+SERQRIEA    PTPSVD +MPPPP YEEVNG+YASQ HNG
Sbjct: 241 RAYHQRVLQILDHLEGEMISERQRIEA---PPTPSVDNSMPPPPPYEEVNGVYASQEHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            TD+MGYFLGEV+ PY AES+VEL LSVGDY+V+RKV+NNGWAEGECKGKAGWFPFGY+E
Sbjct: 298 ITDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVSNNGWAEGECKGKAGWFPFGYVE 357

Query: 360 RRDRVLASKMAEVF 373
           RRD+VLASK+AEVF
Sbjct: 358 RRDQVLASKVAEVF 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080426|ref|XP_002306133.1| predicted protein [Populus trichocarpa] gi|222849097|gb|EEE86644.1| predicted protein [Populus trichocarpa]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/375 (86%), Positives = 352/375 (93%), Gaps = 5/375 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVA+QQQAV KQFG GGYGGSD V+TDEAELHQHQ+LERLYISTRAG
Sbjct: 1   MEAIRKQATKLREQVAKQQQAVLKQFGAGGYGGSDTVITDEAELHQHQKLERLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRD+VRGVEGYIVTGSKQVEIGT+ SEDSRKYG++NTCTSGNTLSKAA++Y  ARAQ
Sbjct: 61  KHFQRDVVRGVEGYIVTGSKQVEIGTRFSEDSRKYGAENTCTSGNTLSKAAVNYANARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEV+KRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVAKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PGN +LA+KL++AE KL DLKSNMAILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REMPGNSELAMKLESAETKLQDLKSNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQT-HN 298
           R YHQ VLQILDQLEGEM SERQRIEA    PTPS + +MPPPP+YEEVNG+YASQ  HN
Sbjct: 241 RAYHQTVLQILDQLEGEMASERQRIEA---PPTPSAESSMPPPPSYEEVNGVYASQAHHN 297

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           G+TD+MGYFLGEV+H YQ +SDVELTLS+GD+VVVRKVTNNGWAEGECKGKAGWFP+GYI
Sbjct: 298 GTTDSMGYFLGEVMHSYQGQSDVELTLSIGDFVVVRKVTNNGWAEGECKGKAGWFPYGYI 357

Query: 359 ERRDRVLASKMAEVF 373
           ERRDRVLASK+AEVF
Sbjct: 358 ERRDRVLASKIAEVF 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508236|ref|XP_003522865.1| PREDICTED: uncharacterized protein LOC100810746 isoform 1 [Glycine max]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/374 (86%), Positives = 351/374 (93%), Gaps = 4/374 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KLREQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSED+RKYG+DNTCTSG+TLS+AAL+Y  ARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERG+LLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEVSKRQAKV
Sbjct: 121 MEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQTHNG 299
             YHQRVLQILDQLEGEM+SERQRIEA    PTPSVD +M PPP+YEEVNG+ ASQ HNG
Sbjct: 241 HAYHQRVLQILDQLEGEMISERQRIEA---PPTPSVDSSMTPPPSYEEVNGVCASQAHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           STD+MGYFLGEV+ PY AES+VEL LSVGDY+VVRKVTNNGWAEGECKGKAGWFPFGYIE
Sbjct: 298 STDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIE 357

Query: 360 RRDRVLASKMAEVF 373
           RR+RVLASK+AEVF
Sbjct: 358 RRERVLASKVAEVF 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103333|ref|XP_002313015.1| predicted protein [Populus trichocarpa] gi|222849423|gb|EEE86970.1| predicted protein [Populus trichocarpa]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/374 (87%), Positives = 356/374 (95%), Gaps = 4/374 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATKLREQVA+QQQAV KQFGGGGYGGSD +VTDEAELHQHQ+LERLYISTRAG
Sbjct: 1   MEAIRKQATKLREQVAKQQQAVLKQFGGGGYGGSDTLVTDEAELHQHQKLERLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEGYIVTGSKQVEIGTK SEDSRKYG++NTCTSGNTLSKAA++YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKFSEDSRKYGAENTCTSGNTLSKAAVNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PG+P+LA+KL++AE KL DLKSNM+ILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 REMPGSPELAMKLESAETKLQDLKSNMSILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSV-DTMPPPPAYEEVNGIYASQTHNG 299
           R YHQRVLQILDQLEGEM SERQRIEA    PTPS  ++MPPPP+YEEVNG+YASQ HNG
Sbjct: 241 RAYHQRVLQILDQLEGEMTSERQRIEA---PPTPSAENSMPPPPSYEEVNGMYASQAHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           +TD++ YFLGEV+H YQ +SDVELTLS+GDYVVVRKVTNNGWAEGECKGKAGWFP+GYIE
Sbjct: 298 TTDSISYFLGEVMHSYQGQSDVELTLSIGDYVVVRKVTNNGWAEGECKGKAGWFPYGYIE 357

Query: 360 RRDRVLASKMAEVF 373
           RRDRVLASK+AEVF
Sbjct: 358 RRDRVLASKIAEVF 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808378|ref|NP_001242513.1| uncharacterized protein LOC100783004 [Glycine max] gi|255635032|gb|ACU17874.1| unknown [Glycine max]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 319/368 (86%), Positives = 346/368 (94%), Gaps = 4/368 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+KL EQVARQQQAV KQFG GGYGGSDN+VTDE EL QHQ+LE LYISTRAG
Sbjct: 1   MEAIRKQASKLLEQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEELYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG+DNTCTSG+TLS+AAL+Y RARAQ
Sbjct: 61  KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGADNTCTSGSTLSRAALNYARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERG+LLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQEAEA+AIEVSKRQAKV
Sbjct: 121 MEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEARAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RETPGN + A+KL+AAE KL DLK+NMAILGKEAAAAMAAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQTHNG 299
           R YHQRVLQILDQLEGEM+SERQRIEA    PTPSVD +M PPP+YEEVNG+YASQ HNG
Sbjct: 241 RAYHQRVLQILDQLEGEMISERQRIEA---PPTPSVDSSMTPPPSYEEVNGVYASQAHNG 297

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           STD+MGYFLGEV+ PY AES+VEL LSVGDY+V+RKVTNNGWAEGECKGKAGWFPFGYIE
Sbjct: 298 STDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVTNNGWAEGECKGKAGWFPFGYIE 357

Query: 360 RRDRVLAS 367
           RR+RVLAS
Sbjct: 358 RRERVLAS 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458099|ref|XP_002279562.1| PREDICTED: uncharacterized protein LOC100264255 isoform 1 [Vitis vinifera] gi|302142592|emb|CBI19795.3| unnamed protein product [Vitis vinifera]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 296/369 (80%), Positives = 337/369 (91%), Gaps = 2/369 (0%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQATK+ +QVA+QQQAV KQF GGGYGG DNV+TDE+EL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQATKIIDQVAKQQQAVLKQFSGGGYGGPDNVLTDESELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEG+IVTGSKQVEIGTKLSEDSRKYG +NTCTSG+TLSKAALS+ RARAQ
Sbjct: 61  KHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDSRKYGVENTCTSGSTLSKAALSFARARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGT+V EPLRAMV+GAPL+DARHLAQRY+RMR EAEAQAIEVSKRQ K 
Sbjct: 121 MEKERGNLLKALGTKVGEPLRAMVMGAPLEDARHLAQRYERMRMEAEAQAIEVSKRQIKA 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE+ GNPD  LKL+AAE KLH+LKSN AILGKEA +AMAAVE QQQRLTLQR+IAMVE+E
Sbjct: 181 RESMGNPDNVLKLEAAEAKLHELKSNTAILGKEAVSAMAAVEGQQQRLTLQRIIAMVESE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGS 300
           R+YHQ VLQILDQLE EML+ERQRIEA P+ PT + + MPPPP+Y+EVN ++ASQT+  S
Sbjct: 241 RSYHQSVLQILDQLESEMLAERQRIEAFPS-PTAN-NAMPPPPSYDEVNNVFASQTYGES 298

Query: 301 TDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           T +MGYFLGEV+H +QAESDVEL LSVGD+VV+RKV+N+GWAEGEC+GKAGWFP GYIER
Sbjct: 299 TGSMGYFLGEVMHSFQAESDVELNLSVGDHVVIRKVSNSGWAEGECRGKAGWFPVGYIER 358

Query: 361 RDRVLASKM 369
           R+RVLASK+
Sbjct: 359 RERVLASKL 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427740|ref|XP_002266234.1| PREDICTED: uncharacterized protein LOC100260580 isoform 1 [Vitis vinifera] gi|147864615|emb|CAN81938.1| hypothetical protein VITISV_028002 [Vitis vinifera] gi|297744745|emb|CBI38007.3| unnamed protein product [Vitis vinifera]

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 314/373 (84%), Positives = 347/373 (93%), Gaps = 2/373 (0%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           MEAIRKQA+K REQVA+QQQAV KQFGGGGYGGSDNV+TDEAEL QHQ+LE+LYISTRAG
Sbjct: 1   MEAIRKQASKFREQVAKQQQAVLKQFGGGGYGGSDNVITDEAELQQHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KHFQRDIVRGVEG+IVTGSKQVEIGTKLSED RKYG +NTCTSGNTLSKAAL+YGRARAQ
Sbjct: 61  KHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDCRKYGVENTCTSGNTLSKAALNYGRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           +EKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRY+RMRQEAEAQAIEVSKRQAK+
Sbjct: 121 IEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYERMRQEAEAQAIEVSKRQAKM 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE  GN D  LKL+AAE KLHDLKSNMAILGKEAAAAMAAVE+QQQRLTLQRLIA VE+E
Sbjct: 181 REATGNADNTLKLEAAEAKLHDLKSNMAILGKEAAAAMAAVEAQQQRLTLQRLIATVESE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGS 300
           R YHQRVLQIL+ LE EM+SERQRIEA P+ P    +  PPPP+YEEVNG++ASQTHNGS
Sbjct: 241 RAYHQRVLQILELLETEMISERQRIEAPPSPPVE--NNTPPPPSYEEVNGVFASQTHNGS 298

Query: 301 TDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           +D++ YFLGEV+H YQAESDVEL LS+GD+VVVRKV+NNGWAEGECKGKAGWFPFGY+E+
Sbjct: 299 SDSISYFLGEVMHSYQAESDVELNLSIGDFVVVRKVSNNGWAEGECKGKAGWFPFGYVEK 358

Query: 361 RDRVLASKMAEVF 373
           R+RVLASKMAEVF
Sbjct: 359 RERVLASKMAEVF 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473515|ref|XP_003607042.1| Rho guanine nucleotide exchange factor [Medicago truncatula] gi|355508097|gb|AES89239.1| Rho guanine nucleotide exchange factor [Medicago truncatula]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 318/375 (84%), Positives = 351/375 (93%), Gaps = 5/375 (1%)

Query: 1   MEAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAG 60
           M+AIRKQA+KLREQVARQQQAV KQFGGGGYGGSDN+VTDE ELH HQ+LE+LYISTRAG
Sbjct: 1   MDAIRKQASKLREQVARQQQAVLKQFGGGGYGGSDNMVTDERELHLHQKLEKLYISTRAG 60

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           KH+QRD+VRGVEGYIVTGSKQVEIGTKLSEDSRKYG++NTCTSG TL +AALSY RARAQ
Sbjct: 61  KHYQRDVVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGGTLCRAALSYSRARAQ 120

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           MEKERGNLLKALGTQVAEPLRAMV+GAPL+DARHLAQRYDRMRQ+AEAQAIEVSKRQAKV
Sbjct: 121 MEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKV 180

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           RE PGN ++A+KL+AAE KL DLKSNM ILG+EAAAA+AAVE+QQQRLTLQRLIAMVEAE
Sbjct: 181 RELPGNSEIAMKLEAAEAKLQDLKSNMNILGREAAAALAAVEAQQQRLTLQRLIAMVEAE 240

Query: 241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVD-TMPPPPAYEEVNGIYASQ-THN 298
           R+YHQ VLQILDQLEGEM+SERQRIEA    PTPS+D +MPPPP YEEVNG+YASQ THN
Sbjct: 241 RSYHQVVLQILDQLEGEMISERQRIEA---PPTPSMDNSMPPPPPYEEVNGVYASQTTHN 297

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GSTD+MGYFLGEV+ PY A S+VEL LSVGDY+V+RKVTNNGWAEGECKG+AGWFPF YI
Sbjct: 298 GSTDSMGYFLGEVLFPYSAVSEVELNLSVGDYIVIRKVTNNGWAEGECKGRAGWFPFSYI 357

Query: 359 ERRDRVLASKMAEVF 373
           ERR+RVLASK+AEVF
Sbjct: 358 ERRERVLASKVAEVF 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
TAIR|locus:2139554	368	AT4G34660 "AT4G34660" [Arabido	0.986	1.0	0.745	9.3e-146
TAIR|locus:2206174	439	AT1G31440 [Arabidopsis thalian	0.707	0.601	0.518	5.7e-86
TAIR|locus:2117666	351	AT4G18060 "AT4G18060" [Arabido	0.723	0.769	0.540	6.7e-72
TAIR|locus:2120257	169	AT4G39020 "AT4G39020" [Arabido	0.233	0.514	0.704	3.8e-30
UNIPROTKB|E1BY30	351	SH3GL1 "Endophilin-A2" [Gallus	0.340	0.361	0.276	9.6e-07
UNIPROTKB|F1PG25	312	SH3GL3 "Uncharacterized protei	0.340	0.407	0.265	1.8e-06
UNIPROTKB|E5RH58	135	SORBS3 "Vinexin" [Homo sapiens	0.120	0.333	0.466	9.6e-06
UNIPROTKB|E5RIA0	94	SORBS3 "Vinexin" [Homo sapiens	0.120	0.478	0.466	9.6e-06
UNIPROTKB|F1MKH2	505	NOSTRIN "Nostrin" [Bos taurus	0.174	0.128	0.424	2.1e-05
UNIPROTKB|Q2KJB5	505	NOSTRIN "Nostrin" [Bos taurus	0.174	0.128	0.424	2.1e-05

TAIR|locus:2139554 AT4G34660 "AT4G34660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
 Identities = 278/373 (74%), Positives = 320/373 (85%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             M+AIRKQA++LREQVARQQQAVFKQF           + DEAEL+QHQ+LE+LYISTRA 
Sbjct:     1 MDAIRKQASRLREQVARQQQAVFKQFGGGGYGSG---LADEAELNQHQKLEKLYISTRAA 57

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
             KH+QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS+NTCT+GN L++AAL+YGRARAQ
Sbjct:    58 KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTNGNVLTRAALNYGRARAQ 117

Query:   121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
             MEKERGN+LKALGTQVAEPLRAMVLGAPL+DARHLAQRYDRMRQEAEAQA EV++RQAK 
Sbjct:   118 MEKERGNMLKALGTQVAEPLRAMVLGAPLEDARHLAQRYDRMRQEAEAQATEVARRQAKA 177

Query:   181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEAE 240
             RE+ GNPD+ +KL++AE KLHDLKSNM ILGKE       VE QQQ+LTL+RL++MVE+E
Sbjct:   178 RESQGNPDILMKLESAEAKLHDLKSNMTILGKEAASALASVEDQQQKLTLERLLSMVESE 237

Query:   241 RTYHQRVLQILDQLEGEMLSERQRIEAAPTAXXXXXXXXXXXXAYEEVNGIYASQTHNGS 300
             R YHQRVLQILDQLEGEM+SERQRIEA  T             +YEE NG++ASQ H+ S
Sbjct:   238 RAYHQRVLQILDQLEGEMVSERQRIEAPSTPSSADSMPPPP--SYEEANGVFASQMHDTS 295

Query:   301 TDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
             TD+MGYFLGEV+ PY   +DVEL+LS G+YVVVRKVT +GWAEGECKGKAGWFP+GYIER
Sbjct:   296 TDSMGYFLGEVLFPYHGVTDVELSLSTGEYVVVRKVTGSGWAEGECKGKAGWFPYGYIER 355

Query:   361 RDRVLASKMAEVF 373
             R+RVLASK++EVF
Sbjct:   356 RERVLASKVSEVF 368

GO:0008150 "biological_process" evidence=ND

GO:0030276 "clathrin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2206174 AT1G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
 Identities = 140/270 (51%), Positives = 184/270 (68%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             MEAIRKQA KLREQVARQQQAV K         +D VV DE ELH HQ+L+ LY ST+A 
Sbjct:     1 MEAIRKQAAKLREQVARQQQAVLKHLGHVN---ADAVVVDEEELHCHQKLQDLYSSTKAA 57

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT-LSKAALSYGRARA 119
             K  QR+IVRG+EG+I TG+K VEIG K +ED +KYG +N     NT LS+ A  +G +  
Sbjct:    58 KRLQRNIVRGLEGFIATGTKVVEIGLKFAEDFKKYGDENP--DANTPLSRVAHHFGTSYK 115

Query:   120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK 179
              +E ER  LL  L  QV EP+R M+  APL+DARHL   YDR+RQE EAQA +V +R++K
Sbjct:   116 SVEGERETLLGVLSEQVCEPIRTMIYSAPLEDARHLVNHYDRLRQEVEAQATDVLRRRSK 175

Query:   180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEA 239
             ++E+  + +  +KL  +E +L +LKS+M  LGKE       V+ QQQ +T QRL A+VEA
Sbjct:   176 LKESDISEEAYIKLKNSESRLAELKSSMKTLGKEATKAMLEVDDQQQNVTSQRLRALVEA 235

Query:   240 ERTYHQRVLQILDQLEGEMLSERQRIEAAP 269
             ER+YH+  L ILD+L  EM++E + I ++P
Sbjct:   236 ERSYHRNALDILDKLHSEMIAEEEAIGSSP 265

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0012505 "endomembrane system" evidence=IDA

GO:0030276 "clathrin binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2117666 AT4G18060 "AT4G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 147/272 (54%), Positives = 191/272 (70%)

Query:     1 MEAIRKQATKLREQVARQQQAVFKQFXXXXXXXSDNVVTDEAELHQHQRLERLYISTRAG 60
             M+A R+QA+KLR+QVA+QQ AV KQF       SD +V DE E+ +H +L++LY STR+ 
Sbjct:     1 MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60

Query:    61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT-SGNTLSKAALSYGRARA 119
             K FQRDIV+  E +   G + +E GTKLSED  +YG++N+     N L+KAA  YG AR 
Sbjct:    61 KEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARK 120

Query:   120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK 179
              ++KE+ +  K L +QV +PLRAMV G+PL+DARHLAQRY RMRQEAE  A EVS+RQA+
Sbjct:   121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQAR 180

Query:   180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEXXXXXXXVESQQQRLTLQRLIAMVEA 239
             VRE P  P+   KL  AE K+ +LK+NMA+LGKE       VESQQ RLT QRL+AMVE 
Sbjct:   181 VREAP-IPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEG 239

Query:   240 ERTYHQRVLQILDQLEGEMLSERQRIEAAPTA 271
             E+ YH R+  IL  +E EM++E+Q  E+AP A
Sbjct:   240 EKNYHLRIAAILSDIEAEMVTEKQHKESAPPA 271

GO:0030276 "clathrin binding" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2120257 AT4G39020 "AT4G39020" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 62/88 (70%), Positives = 75/88 (85%)

Query:   287 EVN-GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE 345
             E N G+ ASQ HNG++DAMGYFLGEV+ PYQA+SD EL+LSVGDYVV+R+V ++ WAEGE
Sbjct:    82 EANDGVNASQMHNGTSDAMGYFLGEVMFPYQADSDFELSLSVGDYVVIREVVSSVWAEGE 141

Query:   346 CKGKAGWFPFGYIERRDRVLASKMAEVF 373
             CKG AGWF + YIERRDRV A+K+ EVF
Sbjct:   142 CKGNAGWFTYIYIERRDRVFATKVIEVF 169

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BY30 SH3GL1 "Endophilin-A2" [Gallus gallus (taxid:9031)]

 Score = 130 (50.8 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
 Identities = 37/134 (27%), Positives = 65/134 (48%)

Query:   230 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAXXXXXXXXXXXXAY---E 286
             + +L A+V+A+  YH++ +QILD+L  E L  R R EA+                +   +
Sbjct:   214 VSQLSALVDAQLDYHRQAVQILDEL-AEKLKRRMR-EASSRPRREYKPKPRETYDFGESD 271

Query:   287 EVNGIYASQTHNGSTDA-MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE 345
             + NG + S T      A +     + ++ ++ E+D EL    GD + +    +  W EG 
Sbjct:   272 QSNGGF-SCTPTPKVSAHLDQPCCKALYDFEPENDGELGFKEGDIITLTNQIDENWYEGM 330

Query:   346 CKGKAGWFPFGYIE 359
               G++G+FP  Y+E
Sbjct:   331 INGQSGFFPLNYVE 344

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1PG25 SH3GL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 35/132 (26%), Positives = 62/132 (46%)

Query:   230 LQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAXXXXXXXXXXXXAYEEVN 289
             + +L   +EA   YH++  +IL +L+ ++   + RI AA +             +  E+N
Sbjct:   177 VSQLAVFIEAALDYHKQSTEILQELQSKL---QMRISAASSVPKREYKPRPIKRSPSELN 233

Query:   290 GIY--ASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK 347
             G+   AS    GS  AM       ++ ++ E+  EL    GD + +    +  W EG   
Sbjct:   234 GVSTTASAKTTGSNVAMDQPCCRGLYDFEPENQGELGFKEGDVITLTNQIDENWYEGMLH 293

Query:   348 GKAGWFPFGYIE 359
             G++G+FP  Y+E
Sbjct:   294 GESGFFPINYVE 305

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E5RH58 SORBS3 "Vinexin" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query:   315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct:    49 FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 93

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0031589 "cell-substrate adhesion" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

UNIPROTKB|E5RIA0 SORBS3 "Vinexin" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query:   315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct:    49 FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 93

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0031589 "cell-substrate adhesion" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

UNIPROTKB|F1MKH2 NOSTRIN "Nostrin" [Bos taurus (taxid:9913)]

 Score = 130 (50.8 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 28/66 (42%), Positives = 37/66 (56%)

Query:   294 SQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWF 353
             S T +G T  +G  L + ++P+QA  D EL L  GD V + K  + GW  G  KGK G F
Sbjct:   428 SSTASGVTQ-LGNGLCKALYPFQARQDDELDLEKGDIVTIHKKKDEGWWFGSLKGKKGHF 486

Query:   354 PFGYIE 359
             P  Y+E
Sbjct:   487 PAAYVE 492

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q2KJB5 NOSTRIN "Nostrin" [Bos taurus (taxid:9913)]

 Score = 130 (50.8 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 28/66 (42%), Positives = 37/66 (56%)

Query:   294 SQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWF 353
             S T +G T  +G  L + ++P+QA  D EL L  GD V + K  + GW  G  KGK G F
Sbjct:   428 SSTASGVTQ-LGNGLCKALYPFQARQDDELDLEKGDIVTIHKKKDEGWWFGSLKGKKGHF 486

Query:   354 PFGYIE 359
             P  Y+E
Sbjct:   487 PAAYVE 492

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	373
cd07607	209	cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (	1e-113
cd07307	194	cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain	2e-18
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	8e-16
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-11
smart00326	56	smart00326, SH3, Src homology 3 domains	5e-11
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	8e-11
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	5e-10
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	4e-09
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	4e-09
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	5e-09
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	6e-09
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	1e-08
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	7e-08
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	8e-08
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	1e-07
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	1e-07
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-07
cd11982	52	cd11982, SH3_Shank1, Src homology 3 domain of SH3	3e-07
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	6e-07
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	6e-07
cd11759	57	cd11759, SH3_CRK_C, C-terminal Src Homology 3 doma	7e-07
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	8e-07
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	8e-07
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	9e-07
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	9e-07
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	9e-07
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-06
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	1e-06
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	1e-06
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	2e-06
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	2e-06
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	2e-06
pfam00018	47	pfam00018, SH3_1, SH3 domain	3e-06
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	3e-06
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	4e-06
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	5e-06
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	5e-06
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	6e-06
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	8e-06
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	8e-06
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	8e-06
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	8e-06
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	1e-05
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	1e-05
cd11983	52	cd11983, SH3_Shank2, Src homology 3 domain of SH3	1e-05
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	1e-05
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	1e-05
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	1e-05
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	2e-05
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	2e-05
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	2e-05
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	3e-05
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	3e-05
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	4e-05
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	5e-05
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	5e-05
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	6e-05
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	7e-05
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	7e-05
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	9e-05
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	9e-05
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	1e-04
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	1e-04
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	2e-04
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	2e-04
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	2e-04
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	3e-04
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	4e-04
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	5e-04
cd12051	56	cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of C	7e-04
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	7e-04
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	9e-04
cd11872	56	cd11872, SH3_DOCK_AB, Src Homology 3 domain of Cla	9e-04
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	0.001
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	0.001
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	0.001
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	0.001
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	0.001
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	0.002
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	0.002
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	0.002
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	0.002
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	0.002
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	0.002
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	0.003
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	0.003
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	0.003
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	0.003
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	0.004
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	0.004

>gnl|CDD|153291 cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

 Score =  329 bits (845), Expect = e-113
 Identities = 144/210 (68%), Positives = 170/210 (80%), Gaps = 1/210 (0%)

Query: 48  QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTL 107
           Q+LERLY STRA KHFQRDIVRGVEG+I TGSKQ+EIGTKL+ED +KYGS+N   +   L
Sbjct: 1   QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENPSVNTA-L 59

Query: 108 SKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167
           S+A+L YG AR QMEKER NL + L  QVAEPLRAMV GAPL+DARHL QRYDR+RQE E
Sbjct: 60  SRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVE 119

Query: 168 AQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR 227
           AQA EV++R++K +E+ GNPD A KL +AE KL +LKS+M  LGKEA +AM AVE QQQ+
Sbjct: 120 AQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEATSAMLAVEDQQQQ 179

Query: 228 LTLQRLIAMVEAERTYHQRVLQILDQLEGE 257
           +TLQRL+AMVEAER YHQR   ILD+L  E
Sbjct: 180 VTLQRLLAMVEAERAYHQRAADILDKLHDE 209

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 209

>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 43/195 (22%), Positives = 94/195 (48%), Gaps = 8/195 (4%)

Query: 61  KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120
           +   + +++  +  + +  +      KLSE  ++ G +    S   L +A   +G+ + +
Sbjct: 6   EKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKE 65

Query: 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV 180
           +E+ R  L + L  +V EPL+  +    L + +   ++ D+ R + +A      ++  K+
Sbjct: 66  LEEFRDQLEQKLENKVIEPLKEYLKKD-LKEIKKRRKKLDKARLDYDA----AREKLKKL 120

Query: 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240
           R+   +     KL  AE +L + K     L +E    +  +E +++ L L  L++ +EA+
Sbjct: 121 RKKKKDSS---KLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQ 177

Query: 241 RTYHQRVLQILDQLE 255
             + + VL+IL+QL 
Sbjct: 178 SEFFKEVLKILEQLL 192

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-BAR domain and is present in Pombe/Cdc15 homology (PCH) family proteins, which include Fes/Fes tyrosine kinases, PACSIN or syndapin, CIP4-like proteins, and srGAPs, among others. The Inverse (I)-BAR or IRSp53/MIM homology Domain (IMD) is found in multi-domain proteins, such as IRSp53 and MIM, that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The I-BAR domain induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. BAR domains that also serve as protein interaction domains include those of arfaptin and OPHN1-like proteins, among others, which bind to Rac and Rho GAP domains, respectively. Length = 194

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 70.8 bits (174), Expect = 8e-16
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGK-----AGWFPFGYIE 359
           + +V+ P+ A ++ +L+L+VG  V+VRK + +GW EGE + +      GWFP  Y++
Sbjct: 1   IAQVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           L      ++  ++ EL+   GD + V +V   GW EG   GK GWFP  Y++
Sbjct: 1   LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 57.2 bits (139), Expect = 5e-11
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIE 359
                  ++ Y A+   EL+   GD + V + +++GW +G    GK G FP  Y+E
Sbjct: 1   EGPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 56.3 bits (137), Expect = 8e-11
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGY 357
            ++ Y+A+ D EL+   GD + V +  ++GW EGE   G+ G FP  Y
Sbjct: 4   ALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           Y+A+ + EL+L  GD V+V + +++GW  GEC G+ GWFP  Y+  
Sbjct: 8   YEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 310 EVVHPYQAESDVELTLSVGDYV-VVRKVT-NNGWAEGECKGKAGWFPFGYIE 359
            V+  Y   +  EL L  GD + V+ K T + GW EGE  G+ G+FP  ++ 
Sbjct: 3   RVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 359
           + VH Y A+   ELTL  GD V V +   +GW EGE    G+ GWFP  Y E
Sbjct: 3   QCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNN--GWAEGECKGKAGWFPFGYIER 360
            ++ ++A +  E++   GD + V +      GW  GE KGK GWFP  Y+E+
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRK--VTNNGWAEGECKGKAGWFPFGYIE 359
           V+  Y+AE++ ELTL  GD V +      + GW +GE  GK G FP  ++E
Sbjct: 4   VLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 21/44 (47%), Positives = 22/44 (50%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 354
           V   Y AE   ELTL VGD +   K    GW EG   GK G FP
Sbjct: 4   VEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFP 47

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 48.3 bits (115), Expect = 7e-08
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 310 EVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGY 357
           E ++ Y+A+ D E+++ VGD + V+R    +GW  GE  G  G FP  Y
Sbjct: 3   EALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 48.2 bits (116), Expect = 8e-08
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           Y A    EL+L  GD V V    +NGW EGE  G+ G  P  Y+E
Sbjct: 8   YVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++ Y A+ D EL+   GD + V K  ++GW EG   G  G FP  Y+E
Sbjct: 4   ALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 312 VHPYQAESDVELTLSVGDYVVVR--KVTNNGWAEGECKGKAGWFPFGYIER 360
           ++P++A S  E+T+  GD V+V   +    GW  GE KGK GWFP  Y E+
Sbjct: 5   LYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK 55

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + Y A  + EL+L  GD + V +  ++GW  GE  GK G FP  Y+E
Sbjct: 6   YSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212915 cd11982, SH3_Shank1, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 1

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 354
           V PYQ++++ E++LS G+ + V  V   G+ EG+ KG+ GWFP
Sbjct: 6   VKPYQSQAEGEISLSKGEKIKVLSVGEGGFWEGQVKGRVGWFP 48

Shank1, also called SSTRIP (Somatostatin receptor-interacting protein), is a brain-specific protein that plays a role in the construction of postsynaptic density (PSD) and the maturation of dendritic spines. Mice deficient in Shank1 show altered PSD composition, thinner PSDs, smaller dendritic spines, and weaker basal synaptic transmission, although synaptic plasticity is normal. They show increased anxiety and impaired fear memory, but also show better spatial learning. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++P++A+S  EL+L  GD + +R+  +  W EGE  G+ G FP  Y+E
Sbjct: 4   ALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 322 ELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           EL+L  GD V +  K++ NGW  GE  G+ GWFP  Y+E
Sbjct: 16  ELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVE 54

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212693 cd11759, SH3_CRK_C, C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 323 LTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           L L VGD V V K+  +G  EGE  GK G FPF ++E
Sbjct: 20  LALEVGDLVKVTKINVSGQWEGELNGKVGHFPFTHVE 56

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The C-terminal SH3 domain of CRK has not been shown to bind any target protein; it acts as a negative regulator of CRK function by stabilizing a structure that inhibits the access by target proteins to the N-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 45.3 bits (107), Expect = 8e-07
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           Y+A+ + ELT++VGD +   K  + GW EGE KG+ G FP  ++
Sbjct: 8   YKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 45.3 bits (107), Expect = 8e-07
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 359
           +V+ PY+A+++ ELT+  GD V +  +   + GW EGE  G+ G FP  +++
Sbjct: 3   KVLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFVK 54

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 316 QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
            A+ D EL L  GD V +  + + GW  GE  G+ G FP G++
Sbjct: 9   SAQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 45.2 bits (107), Expect = 9e-07
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             +  Y+A    +L    GD ++V    N  W EG+CKGK G FP  ++E
Sbjct: 3   VALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           +V+  Y  +++ EL L VGD + V      GW EG+  GK G FP  +++
Sbjct: 3   KVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++  ++ EL++  GD + V +V   GW EG   GK GWFP  Y+ 
Sbjct: 10  FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 8   FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           V+ ++A++  EL+   GD V + +  +  W EGE  G+ G FP  Y+E+
Sbjct: 6   VYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG--ECKGKAGWFPFGYIE 359
           V+ PY  +S+ EL L  GD V V K   +GW +G  +  GK G FP  ++E
Sbjct: 4   VIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVE 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           Y AE + EL+L  G  V V +  ++GW  G   G+ GWFP  Y+
Sbjct: 9   YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct: 9   FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFP 354
           + Y A    EL+   GD ++V + +++GW +G  K GK G  P
Sbjct: 4   YDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIP 46

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVR-KVTNN---GWAEGEC--KGKAGWFPFGYIER 360
           V++PY  + + EL L  GDY+ V  +  ++   GW EG     G +G  P  Y E+
Sbjct: 4   VLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYTEK 59

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           Y AE + EL+L  G  V+V +  ++GW  G   G+ GWFP  Y+
Sbjct: 10  YTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 43.6 bits (102), Expect = 5e-06
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-----GWFPFGYIE 359
           + +V+  Y A    +LTL+ G  +++RK    GW EGE + +      GWFP  Y++
Sbjct: 5   IAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYVK 61

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIE 359
            ++ YQA  D E++   GD +   +  + GW  G   KG+ G FP  Y+E
Sbjct: 4   ALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 43.0 bits (101), Expect = 6e-06
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            +  Y+  S  E+ L  GD V V + + NGW   + K K GW P  Y+E
Sbjct: 4   AIADYEKSSKSEMALKTGDVVEVVEKSENGWWFCQLKAKRGWVPASYLE 52

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            + ++ Y+ +   +L+   GD +++RK  +  W  GEC GK G+FP  Y++
Sbjct: 2   AKALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 42.6 bits (100), Expect = 8e-06
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 312 VHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIER 360
           ++P++A +  E++ + GD + V  + V   GW  G  +G  GWFP  Y+E+
Sbjct: 7   LYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 42.4 bits (100), Expect = 8e-06
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 354
           V  Y  + + E++L  GD V V  +   G+ EG  +G+ GWFP
Sbjct: 5   VKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFP 47

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 42.5 bits (100), Expect = 8e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++ YQ E D E++    + +   ++ + GW +G C G  G FP  Y+E
Sbjct: 6   LYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           Y A  D EL+    D ++  +  ++ W  GEC G  G FP  Y+E 
Sbjct: 8   YDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYVEL 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 322 ELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           EL+L  GD V +  K    GW  GE  G+ GWFP  Y+E
Sbjct: 15  ELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212916 cd11983, SH3_Shank2, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 2

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 354
           VV  YQ + + E+ L  GD V V  +   G+ EG  +G  GWFP
Sbjct: 5   VVKSYQPQVEGEIPLHKGDRVKVLSIGEGGFWEGSARGHVGWFP 48

Shank2, also called ProSAP1 (Proline-rich synapse-associated protein 1) or CortBP1 (Cortactin-binding protein 1), is found in neurons, glia, endocrine cells, liver, and kidney. It plays a role in regulating dendritic spine volume and branching and postsynaptic clustering. Mutations in the Shank2 gene are associated with autism spectrum disorder and mental retardation. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 311 VVHPYQAESDVELTLSVGDYVV-VRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V + Y A  + ELT+ VG+ +  V+K+   GW EGE  G+ G FP  +++
Sbjct: 4   VEYDYDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFPDNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 315 YQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++ E++ EL    GD + +  ++  N W EG   G++G+FP  Y+E
Sbjct: 9   FEPENEGELGFKEGDIITLTNQIDEN-WYEGMVNGQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++ YQA  D E++    D +   ++ + GW  G C+GK G FP  Y+E
Sbjct: 5   LYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
             +  Y+A+ D E++L  G+ V V +  ++GW       K GW P  Y+E 
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++ Y  + D EL+   G  + V K  ++GW EG C G  G FP  Y+E
Sbjct: 5   IYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             +H Y+A+   +L    GD + V    N  W EG   G+ G FP  ++ 
Sbjct: 3   VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++A++  EL L  GD V + K  +  W EGE  G+ G FP  YIE
Sbjct: 9   FKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 315 YQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + A    EL+L  GD + ++ K    GW  GE  G+ GWFP  Y+E
Sbjct: 8   FCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           ++ E + EL+ S GD + +++     WA+GE  GK G FP  ++
Sbjct: 8   FEGEQEDELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++ Y+A+   EL+   GD + +   ++  W +  C GK G  P  Y+E
Sbjct: 5   LYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYVE 52

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V+H + AE   +L+L+ G+ V + +  +  W  G+CK   G FP  +++
Sbjct: 4   VLHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 309 GEVVHPYQ--AESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIE 359
           GE V  Y   A+++VEL+L  GD VV+ K  +  W EG+  G  + G FP  Y+E
Sbjct: 1   GEAVAKYNFNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYVE 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           G+ ++ Y+ +   +L  + GD +++R+  +  W  GE  G  G+ P  YI+
Sbjct: 3   GKALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELNGCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 39.8 bits (93), Expect = 7e-05
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 359
           Y+A+ + ELTL   D ++VR+ +++GW EG     G+ GWFP  ++E
Sbjct: 8   YKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           ++ Y A+   EL+ + GD + + K   +GW  G  +GK G FP  Y+E+
Sbjct: 5   LYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIER 360
            ++ Y  +++ EL L  GD V V +  ++GW  G  +  G  G FP  Y+ R
Sbjct: 4   ALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSERTGLFGTFPGNYVAR 55

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 313 HPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYI 358
           + ++ +   +L+   GD + V  R  +   W EG  +G+ G FP  Y+
Sbjct: 6   YSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + PY A+++ EL+   GD + V    +  W  GE  G+ G FP  Y+E
Sbjct: 5   LFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 354
            V  Y  + + E+ L+ G+ V V  +   G+ EG  KG+ GWFP
Sbjct: 5   AVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVKGRTGWFP 48

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPF 355
           G  ++ +QA    EL   VGD + +     +GW EGE KG+ G FP 
Sbjct: 2   GVALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFPH 48

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 315 YQAESDVELTLSVGDYVV-VRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + A++ VEL+   GD +   R+V  N W EG   G+ G FP  Y++
Sbjct: 8   FNADTGVELSFRKGDVITLTRRVDEN-WYEGRIGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 359
           + VHPY ++   EL+L + D + +   T++GW  GE     + GWFP   +E
Sbjct: 3   QCVHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVVE 54

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFP 354
           E++  Y A+   EL+L   D V+V +  ++GW  GE    G+ GWFP
Sbjct: 3   EIIKAYTAKQPDELSLQQADVVLVLQTESDGWYYGERLRDGERGWFP 49

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           +V   Y  +++ EL L VGD + V      GW EG   GK G FP  +I+
Sbjct: 3   QVAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 52

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212984 cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis proteins 1 and 5

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG---ECKGKAGWFPFGYI 358
           G  ++ Y A    EL+L +GD V + + T  GW  G     K K G FP  YI
Sbjct: 2   GVAIYNYDARGPDELSLQIGDTVHILE-TYEGWYRGYTLRKKSKKGIFPASYI 53

Dock1, also called Dock180, and Dock5 are class A DOCKs and are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock1 binds to DHR-2 in an autoinhibitory manner; binding of Elmo to the SH3 domain of Dock1 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           +  +   EL    GD + V   ++  W +GE +G+ G FP  Y++ 
Sbjct: 8   FNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 323 LTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           L+   G+ + V +  + GW EGE  G  GWFP  Y+
Sbjct: 17  LSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212805 cd11872, SH3_DOCK_AB, Src Homology 3 domain of Class A and B Dedicator of Cytokinesis proteins

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG---ECKGKAGWFPFGYI 358
            G  ++ +Q + + +L+L VGD V + +    GW  G     K   G FP  Y+
Sbjct: 1   YGVAIYNFQGDGEHQLSLQVGDTVQILE-ECEGWYRGFSLRNKSLKGIFPKSYV 53

DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. They are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1, 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. This subfamily includes only Class A and B DOCKs, which also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus. Class A/B DOCKs are mostly specific GEFs for Rac, except Dock4 which activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. The SH3 domain of class A/B DOCKs have been shown to bind Elmo, a scaffold protein that promotes GEF activity of DOCKs by releasing DHR-2 autoinhibition by the intramolecular SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 354
           H Y A+   +L  S GD + +    N  W EG C G+ G FP
Sbjct: 6   HDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFP 47

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           V++PY A    E+ L  G  V V +    GW +   +GK GW P  Y+++
Sbjct: 5   VIYPYTARDQDEINLEKGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKK 54

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             + +  + A+ D  L  S  D + V +   N W  GE  G  GWFP  Y++
Sbjct: 1   KAQALCSWTAKKDNHLNFSKNDIITVLEQQENWWF-GEVHGGRGWFPKSYVK 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            + ++P++A+ D  L  +  D + V +   + W  GE +G+ GWFP  Y++
Sbjct: 2   AQALYPWRAKKDNHLNFNKNDVITVLE-QQDMWWFGEVQGQKGWFPKSYVK 51

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            + ++ Y+ +   +L  S GD +++R+  +  W  GE  G  G+FP  +++
Sbjct: 3   AKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQ 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 312 VHPYQAESDVELTLSVGDYV-VVRKVTNN-GWAEGECKGKAGWFP 354
           +  Y+  ++ EL    G+ + ++ K T   GW +GE  GK G FP
Sbjct: 7   LFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFP 51

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           ++PY++    +LT + GD ++V K  +  W  G    + G FP  Y+
Sbjct: 5   LYPYESNEPGDLTFNAGDVILVTK-KDGEWWTGTIGDRTGIFPSNYV 50

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           +V+  Y  +++ EL L VGD + + +    GW  G   GK+G FP  +++
Sbjct: 4   KVLFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V++ Y A+ D EL++S GD V V +   +GW   E  G+ G  P  Y+E
Sbjct: 4   VLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++ Y  + + EL+   G  + V K  ++GW EG   G  G FP  Y+E
Sbjct: 8   IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 55

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 322 ELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 359
           EL+L  GD V +  R   + GW +GE  G+ GWFP  Y+E
Sbjct: 16  ELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++ ++A  D EL  + GD + V   +N  W +G   GK G FP  Y+ 
Sbjct: 5   LYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYVA 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGY 357
              ++ +  E++ EL+   GD +   +  +  W  GE +GK+G FP  +
Sbjct: 2   ARALYDFTGENEDELSFKAGDIITELESIDEEWMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIE 359
           YQA  D E++   GD +   +  + GW  G    G  G FP  Y+E
Sbjct: 8   YQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYI 358
           +P++A+ +  L+ + GD + V +     W  GE   G+ GWFP  Y+
Sbjct: 6   YPWRAKKENHLSFAKGDIITVLEQQEM-WWFGELEGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           ++ Y A++D EL  S G  + V    +  W +GE  G+ G FP  Y++
Sbjct: 6   MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 312 VHPYQAESDVELTLSVGDYVVV----RKVT-NNGWAEGECKGKAGWFPFGYIER 360
           V  Y+A ++ ELTL  GD V V      V+ + GW  G+   + G FP  Y+  
Sbjct: 5   VFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYVTS 58

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	373
KOG1118	366	consensus Lysophosphatidic acid acyltransferase en	100.0
cd07607	209	BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domai	100.0
KOG3725	375	consensus SH3 domain protein SH3GLB [Signal transd	100.0
cd07617	220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07613	223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	100.0
cd07616	229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07614	223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	100.0
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	100.0
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	100.0
cd07619	248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.97
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	99.97
cd07618	246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.96
cd07600	242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	99.94
cd07620	257	BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.91
smart00721	239	BAR BAR domain.	99.84
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	99.78
KOG3771	460	consensus Amphiphysin [Intracellular trafficking,	99.68
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	99.66
PF10455	289	BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr	99.54
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.53
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.38
KOG2856	472	consensus Adaptor protein PACSIN [Signal transduct	99.36
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	99.25
KOG2070	661	consensus Guanine nucleotide exchange factor [Nucl	99.24
KOG2199	462	consensus Signal transducing adaptor protein STAM/	99.22
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.21
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.18
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	99.17
cd07606	202	BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain	99.16
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.12
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	99.12
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	99.11
cd07590	225	BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B	99.11
cd07603	200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	99.1
cd07588	211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	99.1
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	99.09
cd07639	200	BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.09
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	99.06
cd07612	211	BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B	99.06
cd07634	207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	99.05
cd07602	207	BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR	99.01
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	99.01
cd07637	200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	98.98
cd07601	215	BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A	98.97
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	98.96
cd07642	215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.94
cd07638	200	BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.94
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	98.93
cd07635	207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.92
cd07636	207	BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G	98.87
cd07611	211	BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR)	98.83
PF06456	229	Arfaptin: Arfaptin-like domain; InterPro: IPR01050	98.77
KOG2546	483	consensus Abl interactor ABI-1, contains SH3 domai	98.76
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	98.76
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	98.71
cd07641	215	BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.69
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	98.69
cd07591	224	BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o	98.68
KOG3655	484	consensus Drebrins and related actin binding prote	98.67
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.59
cd07631	215	BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.58
PF08397	219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	98.56
cd07633	207	BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.53
KOG4792	293	consensus Crk family adapters [Signal transduction	98.53
cd07640	213	BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	98.51
cd07632	215	BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.46
KOG1702	264	consensus Nebulin repeat protein [Cytoskeleton]	98.39
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.36
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	98.34
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	98.33
KOG3875	362	consensus Peroxisomal biogenesis protein peroxin [	98.29
KOG4429	421	consensus Uncharacterized conserved protein, conta	98.23
cd07605	223	I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5	98.22
cd00011	203	BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do	98.21
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	98.2
cd07589	195	BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of	98.19
KOG3523	695	consensus Putative guanine nucleotide exchange fac	98.19
KOG4792	293	consensus Crk family adapters [Signal transduction	98.15
KOG1843	473	consensus Uncharacterized conserved protein [Funct	98.14
cd07660	201	BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain	98.11
PF06730	219	FAM92: FAM92 protein; InterPro: IPR009602 This fam	98.09
cd07659	215	BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.07
KOG3876	341	consensus Arfaptin and related proteins [Signal tr	98.07
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.05
cd07624	200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	98.04
cd07643	231	I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I	98.01
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	98.0
KOG2222	848	consensus Uncharacterized conserved protein, conta	97.94
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.9
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	97.86
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	97.85
KOG2528	490	consensus Sorting nexin SNX9/SH3PX1 and related pr	97.8
cd07625	230	BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of	97.79
KOG4773	386	consensus NADPH oxidase [Energy production and con	97.65
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	97.61
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.58
cd07628	185	BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of	97.52
cd07665	234	BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.51
cd07622	201	BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.44
cd07629	187	BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of	97.34
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.31
cd07630	198	BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain	97.29
KOG3557	721	consensus Epidermal growth factor receptor kinase	97.27
cd07663	218	BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.92
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	96.88
cd07662	218	BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.88
KOG4575	874	consensus TGc (transglutaminase/protease-like) dom	96.82
KOG3565	640	consensus Cdc42-interacting protein CIP4 [Cytoskel	96.77
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	96.75
cd07646	232	I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th	96.64
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	96.6
cd07674	261	F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A	96.6
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	96.48
cd07673	269	F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A	96.45
cd07667	240	BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of	96.42
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	96.38
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	96.38
cd07661	204	BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of	96.36
cd07621	219	BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of	96.35
KOG3775	482	consensus Mitogen-activated protein kinase scaffol	96.28
cd07645	226	I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as	96.25
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	96.2
cd07648	261	F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am	96.18
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	96.18
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	96.05
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	95.96
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	95.84
cd07657	237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	95.77
cd07655	258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	95.72
KOG0040	2399	consensus Ca2+-binding actin-bundling protein (spe	95.68
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	95.63
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	94.93
cd07644	215	I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as	94.83
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	94.52
cd07626	199	BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain	94.3
cd07597	246	BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S	94.12
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	94.1
smart00721	239	BAR BAR domain.	94.06
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	93.85
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	93.71
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	93.46
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	93.39
cd07610	191	FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or	92.7
cd07609	214	BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domai	92.57
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	92.19
cd07686	234	F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amp	91.72
cd07681	258	F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin	91.69
KOG3812	475	consensus L-type voltage-dependent Ca2+ channel, b	91.56
cd07671	242	F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin	91.38
smart00287	63	SH3b Bacterial SH3 domain homologues.	90.55
PRK10884	206	SH3 domain-containing protein; Provisional	90.12
cd07685	237	F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amp	89.8
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	89.78
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	89.77
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	89.51
cd07652	234	F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Am	88.62
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	86.29
KOG2273	503	consensus Membrane coat complex Retromer, subunit	84.07
cd07669	207	BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of	82.47
cd07617	220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	82.06
KOG3705	580	consensus Glycoprotein 6-alpha-L-fucosyltransferas	81.32
KOG4384	361	consensus Uncharacterized SAM domain protein [Gene	80.92
cd07680	258	F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin	80.55

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-58  Score=425.70  Aligned_cols=315  Identities=22%  Similarity=0.371  Sum_probs=261.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC-CCCccccchHHhh-hhHHHHHHHHHhhhhhhHHH------------HHhhhhccc-c
Q 017347           11 LREQVARQQQAVFKQFGGGGYG-GSDNVVTDEAELH-QHQRLERLYISTRAGKHFQR------------DIVRGVEGY-I   75 (373)
Q Consensus        11 ~~~~~a~~~q~~~~~~~~~~~~-~~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~------------~i~r~~e~~-~   75 (373)
                      ++.||+|.+|.+-.++||+.-. ..|+|..+|-|+. +..++.+|+.+|..   |..            +++..+-|. +
T Consensus         1 m~kqF~ka~Q~~sEK~ggae~TkLdDdF~eme~~vdvt~~~v~~i~~~tte---ylqpnpa~rakl~~~n~lsKvrG~~k   77 (366)
T KOG1118|consen    1 MKKQFNKASQWTSEKVGGAEGTKLDDDFLEMEKEVDVTSKGVTKILAKTTE---YLQPNPASRAKLAMLNTLSKVRGQVK   77 (366)
T ss_pred             CchHHHHHHHHhccccccccCCcCChHHHHHHHhHHHHHHHHHHHHHhhHH---hcCCChhhhhHHHHHHHHHHhccccc
Confidence            4679999999999999976521 3888998888888 89999999999876   888            888888887 5


Q ss_pred             cCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-H
Q 017347           76 VTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-H  154 (373)
Q Consensus        76 ~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~  154 (373)
                      .++|||.|+  +||++|++||.|+|  .+|.||.+|+.+|+++.+|+++++.|+..++.+||+||++++.. ++|++. |
T Consensus        78 ~~~ypq~e~--~Lg~~mik~gkeLg--~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~-elK~i~hh  152 (366)
T KOG1118|consen   78 EKGYPQTEG--LLGDVMIKHGKELG--DDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLK-ELKDIQHH  152 (366)
T ss_pred             CCCCccchh--HHHHHHHHHHHhcC--CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHH-HHHHHHHH
Confidence            678999998  79999999999999  99999999999999999999999999999999999999999775 999999 7


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hHHHHHHH
Q 017347          155 LAQRYDRMRQEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA---VESQQQRL  228 (373)
Q Consensus       155 ~k~~y~~~r~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~---~~~~~~~~  228 (373)
                      +||        ||+|||||   ++|+.|.++        ++||+|.+||+|++|.       +...|.+   ++.+|   
T Consensus       153 ~KK--------LEgRRldyD~kkkk~~K~~d--------EelrqA~eKfEESkE~-------aE~sM~nlle~d~eq---  206 (366)
T KOG1118|consen  153 RKK--------LEGRRLDYDYKKKKQGKIKD--------EELRQALEKFEESKEL-------AEDSMFNLLENDVEQ---  206 (366)
T ss_pred             HHH--------hhhhhhHHHHHHHHhccCCh--------HHHHHHHHHHHHHHHH-------HHHHHHHHHhcCHHH---
Confidence            655        99999999   666667664        4999999999999999       9999965   57777   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhcCCCCCCCCCCCCC--------CCCCCc-cccCccC------
Q 017347          229 TLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMP--------PPPAYE-EVNGIYA------  293 (373)
Q Consensus       229 ~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~se~~~~~s~~~~~~p~~~~~~--------p~~s~~-~~~~~~~------  293 (373)
                       +++|.+||+||++||+++.+||+.|+..+.+   ++..+++.  |+..+.|        +|.+.+ ..++..+      
T Consensus       207 -vsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~---r~r~a~~~--prrey~p~~~~an~f~p~~~p~~~~g~~s~T~~t~  280 (366)
T KOG1118|consen  207 -VSQLSALIQAQLDFHRQSTQILQELQMKLFS---RIRDASSQ--PRREYVPRSVLANEFAPSGPPIQLNGKLSKTTSTP  280 (366)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhcC--chhhcCCcccccccCCCCCCccccCCCCCcCccCc
Confidence             9999999999999999999999999999987   44443333  1111111        000000 0111000      


Q ss_pred             ---------CCCCC-CC---CCCCCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347          294 ---------SQTHN-GS---TDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       294 ---------~~~~~-~~---~~~~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                               ++.|+ .|   ..+...++|+++|||++++++||.|++||+|.|++..|+|||+|+..|..|+||.|||++
T Consensus       281 ~~ass~~~is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~v  360 (366)
T KOG1118|consen  281 QSASSPSNISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEV  360 (366)
T ss_pred             cccCCcccCCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEE
Confidence                     00111 11   145677899999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC
Q 017347          361 RDRVL  365 (373)
Q Consensus       361 l~~~p  365 (373)
                      +.|+|
T Consensus       361 lvpl~  365 (366)
T KOG1118|consen  361 LVPLP  365 (366)
T ss_pred             eccCC
Confidence            99987

>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

Probab=100.00  E-value=4.1e-56  Score=388.31  Aligned_cols=208  Identities=69%  Similarity=0.983  Sum_probs=203.3

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN  127 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~  127 (373)
                      ++|||||.||+++|||||+|||++|||+++|+||+|++++|+++|++||.|++ ..++.+++|...||.|+++|++++++
T Consensus         1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~-~~~~~LsrAa~~yG~a~~~mEkEre~   79 (209)
T cd07607           1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP-SVNTALSRASLHYGSARNQMEKEREN   79 (209)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHHhHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999987 57778999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHH
Q 017347          128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM  207 (373)
Q Consensus       128 ~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~  207 (373)
                      |+..+++++++|||.|+.|+||+|+|||+++|||+|++.|.+..++.+|+.|.++..++++.+.+|+.||.|++|++..|
T Consensus        80 l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M  159 (209)
T cd07607          80 LHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSM  159 (209)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347          208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (373)
Q Consensus       208 ~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~  256 (373)
                      ..||||++.+|..|++|||++|+++|.+||+|+..||++...||++|+.
T Consensus       160 ~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~  208 (209)
T cd07607         160 NTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHD  208 (209)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i

>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-49  Score=362.68  Aligned_cols=317  Identities=18%  Similarity=0.260  Sum_probs=246.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCC--
Q 017347            4 IRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQ--   81 (373)
Q Consensus         4 ~~~~~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~--   81 (373)
                      ++|-||---.=|.|+-|.-=.+||.+.     .     .|  -..|||||++++++||+|+++|++++|++++|+ |.  
T Consensus         5 ~KKlAsDAG~FfsRAvQfTEEkfgqAE-----k-----TE--LDaHfENLL~rAd~Tk~wTekil~qtEvlLQPN-P~aR   71 (375)
T KOG3725|consen    5 FKKLASDAGGFFSRAVQFTEEKFGQAE-----K-----TE--LDAHFENLLQRADKTKDWTEKILSQTEVLLQPN-PTAR   71 (375)
T ss_pred             HHHHhhhcchHHHHHHHHhHHHhhhhh-----H-----hh--HHHHHHHHHHHhhhhhHHHHHHHHhhheecCCC-cchh
Confidence            567777777778888888888888333     1     13  368999999999999999999999999999984 32  


Q ss_pred             ----------------CchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347           82 ----------------VEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus        82 ----------------~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                                      ..++|.|+++|+.+|.|||  +.++||+||+++|+++++|+.+.++|+.....+||.|||+|++
T Consensus        72 ~EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efG--ptTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlE  149 (375)
T KOG3725|consen   72 MEEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFG--PTTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLE  149 (375)
T ss_pred             HHHHHHHHHhccCccccCCHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhh
Confidence                            2378899999999999999  9999999999999999999999999999999999999999999


Q ss_pred             CCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHH--hhhhccCC--CC---------cchHHHHHHHHHHHHHHHHHHH
Q 017347          146 GAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKR--QAKVRETP--GN---------PDLALKLDAAEVKLHDLKSNMA  208 (373)
Q Consensus       146 ~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r--~~K~~e~~--~~---------~~~~~eL~~ae~K~~e~~e~~~  208 (373)
                      | |||+|. +        |+-|.++|||+   |.|  ++|..+..  +|         ..++++||.|+.+|+.+.|+  
T Consensus       150 G-D~KTI~KE--------RklLqnkRLDLDAcKsRLKKAKaae~q~~rN~~~s~~~~ie~aEqelRvaQ~EFDrQaEi--  218 (375)
T KOG3725|consen  150 G-DMKTIQKE--------RKLLQNKRLDLDACKSRLKKAKAAELQTVRNSKTSGGFTIEQAEQELRVAQAEFDRQAEI--  218 (375)
T ss_pred             c-cHHHHHHH--------HHHHhhcccChHHHHHHHHHhhhhhhhccccccccCcchHhHHHHHHHHHHHHHhHHHHH--
Confidence            9 999998 5        55699999999   444  33333221  11         25689999999999999999  


Q ss_pred             HhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhcCCCCCCCCCCCCCCCCC
Q 017347          209 ILGKEAAAAMA----AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPA  284 (373)
Q Consensus       209 ~L~kea~~~m~----~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~se~~~~~s~~~~~~p~~~~~~p~~s  284 (373)
                            ++.++    +.+++|    |+||..||+||..||.||++.|-+|+.+|..    ..+.-... ....+++|.|+
T Consensus       219 ------TrLLLEGIsstH~nh----LrCL~dFVeaQmtyYAQcyq~MlDLQkqLg~----fps~~~s~-~~~~s~sp~ps  283 (375)
T KOG3725|consen  219 ------TRLLLEGISSTHNNH----LRCLRDFVEAQMTYYAQCYQLMLDLQKQLGG----FPSFRGSS-AILVSNSPDPS  283 (375)
T ss_pred             ------HHHHHHhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cccccccc-ccccCCCCCCC
Confidence                  56654    357888    9999999999999999999999999999976    22211100 00111212222


Q ss_pred             Cccc-cCc----cCC----CCCCCCC---CCCCceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCee
Q 017347          285 YEEV-NGI----YAS----QTHNGST---DAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKA  350 (373)
Q Consensus       285 ~~~~-~~~----~~~----~~~~~~~---~~~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~  350 (373)
                      ..+. .+.    .++    ++|...+   ...+..+++|+|||++..+.||++..+|+|+|++..  |.+|+.|+++|++
T Consensus       284 ~~pt~aaa~a~a~pSgl~i~~P~~ls~l~e~sgtrkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkk  363 (375)
T KOG3725|consen  284 NGPTMAAAIAAAKPSGLLITSPDDLSDLKECSGTRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKK  363 (375)
T ss_pred             CCchHHHHHhccCCcceeecCcchhhhHHhhccccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCC
Confidence            1110 000    000    0011000   133578899999999999999999999999999975  7789999999999


Q ss_pred             eEecCCCeeec
Q 017347          351 GWFPFGYIERR  361 (373)
Q Consensus       351 G~fP~~Yve~l  361 (373)
                      |.+|.+|++.+
T Consensus       364 GKvPvtYlELL  374 (375)
T KOG3725|consen  364 GKVPVTYLELL  374 (375)
T ss_pred             CCcchhHHHhc
Confidence            99999999875

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2

Probab=100.00  E-value=8.3e-38  Score=286.39  Aligned_cols=195  Identities=16%  Similarity=0.255  Sum_probs=166.0

Q ss_pred             HHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCC-------------------CC
Q 017347           20 QAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-------------------SK   80 (373)
Q Consensus        20 q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-------------------~~   80 (373)
                      |.|-.++||+.     .+-.|       .+|+.|-..+++||.|+.+|++++|.+++|+                   .|
T Consensus         1 Q~~~EkiG~AE-----~Teld-------~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~   68 (220)
T cd07617           1 QFTEEKLGQAE-----KTELD-------AHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRV   68 (220)
T ss_pred             CcchhhccCcc-----CCcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCC
Confidence            45667777554     33323       3688999999999999999999999999985                   13


Q ss_pred             CCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHH
Q 017347           81 QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRY  159 (373)
Q Consensus        81 ~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y  159 (373)
                      +.+  +.||++|++||.|||  ++|+||.||++||+|+++|+.++++|+..+.++||+||++++++ +||+|. +     
T Consensus        69 ~~~--~~Lg~~M~~~g~~~g--~~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~-dlk~i~k~-----  138 (220)
T cd07617          69 TNA--ELLGQYMTEAANDFG--PGTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEG-DWKTISKE-----  138 (220)
T ss_pred             ChH--HHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----
Confidence            333  479999999999999  99999999999999999999999999999999999999999998 999988 5     


Q ss_pred             HHHHHHHHHHHHHH--HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHH
Q 017347          160 DRMRQEAEAQAIEV--SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLI  234 (373)
Q Consensus       160 ~~~r~~le~rrld~--k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~  234 (373)
                         |++|++|||||  ++++.+..        +.+|++|++||++++|.       +...|.++   ++++    |++|.
T Consensus       139 ---RKkLe~rRLd~D~~K~r~~ka--------e~elr~A~~kf~~~~E~-------a~~~M~~il~~~~e~----l~~L~  196 (220)
T cd07617         139 ---RRLLQNRRLDLDACKARLKKA--------EHELRVAQTEFDRQAEV-------TRLLLEGISSTHVNH----LRCLH  196 (220)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH----HHHHH
Confidence               55599999999  33333322        45999999999999999       88889764   5566    99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH
Q 017347          235 AMVEAERTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       235 ~~veAql~Yh~q~~~iL~~L~~eL  258 (373)
                      +||+||++||.+|+++|.+|+..|
T Consensus       197 ~lv~AQl~Yh~q~~e~L~~l~~~~  220 (220)
T cd07617         197 EFVEAQATYYAQCYRHMLDLQKQL  220 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999998754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1

Probab=100.00  E-value=1.3e-37  Score=286.17  Aligned_cols=181  Identities=21%  Similarity=0.286  Sum_probs=162.5

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhcccccCC------------------------CCCCchhhHHHHHHHHhhccCCCCC
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTS  103 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~Lg~~m~~~g~e~~~~~  103 (373)
                      .+|++|-.++++||.|+.+|+++++.+++|+                        ||+.+.  .||++|++||+|||  +
T Consensus         7 ~~f~~le~k~D~t~~~~~~i~~~t~~~LQPNpa~r~k~~~~~~~~K~~g~~K~~~~p~~~~--~Lg~~M~~~G~elg--~   82 (223)
T cd07613           7 DDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEA--LLAEAMLKFGRELG--D   82 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhccccCCCCCChHh--HHHHHHHHHHhhCC--C
Confidence            4788999999999999999999999999985                        455555  79999999999999  9


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhh
Q 017347          104 GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAK  179 (373)
Q Consensus       104 ~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K  179 (373)
                      +|+||.||++||+|+++||.++++|+..++++||+||++++++ +||+|. +        ||+|++|||||   |+|..|
T Consensus        83 dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~-dik~i~k~--------RKkLe~rRLd~D~~K~r~~k  153 (223)
T cd07613          83 ECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDK-DLREIQHH--------LKKLEGRRLDFDYKKKRQGK  153 (223)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHhHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999998 999987 5        55599999999   333323


Q ss_pred             hccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347          180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (373)
Q Consensus       180 ~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~  256 (373)
                      .        .+.+|+.|++||++++|.       +...|.++   +.++    +++|.+||+||++||++|.++|.+|+.
T Consensus       154 ~--------~eeElr~A~~kFees~E~-------a~~~M~n~l~~e~e~----~~~L~~fveAQl~Yh~qa~eiL~~l~~  214 (223)
T cd07613         154 I--------PDEELRQALEKFDESKEI-------AESSMFNLLEMDIEQ----VSQLSALVQAQLEYHKQATQILQQVTV  214 (223)
T ss_pred             C--------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2        267999999999999999       99999773   5566    999999999999999999999999999


Q ss_pred             HHHH
Q 017347          257 EMLS  260 (373)
Q Consensus       257 eL~s  260 (373)
                      .|..
T Consensus       215 ~l~~  218 (223)
T cd07613         215 KLED  218 (223)
T ss_pred             HHHH
Confidence            9986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=100.00  E-value=1.8e-37  Score=287.69  Aligned_cols=202  Identities=18%  Similarity=0.323  Sum_probs=167.2

Q ss_pred             HhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCC--------------------CCCCch
Q 017347           25 QFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG--------------------SKQVEI   84 (373)
Q Consensus        25 ~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~--------------------~~~~e~   84 (373)
                      ||-++.+|+.+.+-.|       .+|+.|-..++.+|.|+++|.+.++.+++|+                    +|++| 
T Consensus         1 Q~~~Ek~G~aEkTe~d-------~df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e-   72 (229)
T cd07594           1 QFTEEKLGTAEKTEYD-------AHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLE-   72 (229)
T ss_pred             CcchhhccccccCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHH-
Confidence            4455555554444433       3567777888888888888888888888763                    44444 


Q ss_pred             hhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHH
Q 017347           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMR  163 (373)
Q Consensus        85 ~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r  163 (373)
                        .||++|++||++||  ++|+||.||++||+|+.+||.++.+|+..+.++||+||++++++ +|++|. +        |
T Consensus        73 --~Lg~~M~~~g~~lg--~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~-dik~i~k~--------R  139 (229)
T cd07594          73 --QLGQAMIEAGNDFG--PGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEG-DMKTISKE--------R  139 (229)
T ss_pred             --HHHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------H
Confidence              69999999999999  99999999999999999999999999999999999999999998 999987 5        5


Q ss_pred             HHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHH
Q 017347          164 QEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMV  237 (373)
Q Consensus       164 ~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~v  237 (373)
                      ++|+++||||   |.|..|.+...+.+..+.+|+.|++||++++|+       +...|.++   ++++    +++|.+||
T Consensus       140 KkLe~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E~-------a~~~M~~i~~~~~~~----~~~L~~lv  208 (229)
T cd07594         140 KLLENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAEI-------TKLLLEGISSTHANH----LRCLRDFV  208 (229)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCchH----HHHHHHHH
Confidence            5599999999   444443332223456799999999999999999       99999774   4666    99999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHH
Q 017347          238 EAERTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       238 eAql~Yh~q~~~iL~~L~~eL  258 (373)
                      +||++||.+|+++|.+|+..|
T Consensus       209 ~AQl~Yh~q~~e~L~~l~~~l  229 (229)
T cd07594         209 EAQMTYYAQCYQYMDDLQRQL  229 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1

Probab=100.00  E-value=2.1e-37  Score=286.22  Aligned_cols=203  Identities=17%  Similarity=0.270  Sum_probs=172.5

Q ss_pred             HHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCC-------------------CC
Q 017347           20 QAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-------------------SK   80 (373)
Q Consensus        20 q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-------------------~~   80 (373)
                      |.|-.++||+.     .+-.|       .+|+.|-..+++||.|+.+|+++++.+++|+                   ||
T Consensus         1 q~~~EkiG~AE-----~Te~d-------~df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~   68 (229)
T cd07616           1 QFTEEKFGQAE-----KTELD-------AHLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRM   68 (229)
T ss_pred             CcchhhccCcc-----CCccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCC
Confidence            45666777554     33323       3788999999999999999999999999985                   45


Q ss_pred             CCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHH
Q 017347           81 QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRY  159 (373)
Q Consensus        81 ~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y  159 (373)
                      +.+.  .||++|++||.+||  ++|+||.||++||+|+++||.++++|+..+.++||.||+.++++ +|++|. +     
T Consensus        69 ~~~~--~Lg~~M~~~g~~~g--~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~-dik~i~k~-----  138 (229)
T cd07616          69 NNPE--LLGQYMIDAGNEFG--PGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG-DYKTITKE-----  138 (229)
T ss_pred             ChHH--HHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----
Confidence            5554  79999999999999  99999999999999999999999999999999999999999998 999988 5     


Q ss_pred             HHHHHHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHH
Q 017347          160 DRMRQEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRL  233 (373)
Q Consensus       160 ~~~r~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L  233 (373)
                         |++|+++||||   |.|..|.+.....+..+.+|+.|++||+++.|+       +...|.++   ++++    +++|
T Consensus       139 ---RKkLe~rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~-------a~~~m~~i~~~~~e~----~~~L  204 (229)
T cd07616         139 ---RKLLQNKRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEI-------TRLLLEGISSTHAHH----LRCL  204 (229)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHH-------HHHHHHhhhhcChHH----HHHH
Confidence               55599999999   444444333334455689999999999999999       88888663   5666    9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHH
Q 017347          234 IAMVEAERTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       234 ~~~veAql~Yh~q~~~iL~~L~~eL  258 (373)
                      ..||+||++||.+|.++|.+|+..|
T Consensus       205 ~~lv~AQl~Yh~~~~e~L~~L~~~l  229 (229)
T cd07616         205 NDFVEAQMTYYAQCYQYMLDLQKQL  229 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=100.00  E-value=1.5e-36  Score=279.49  Aligned_cols=180  Identities=21%  Similarity=0.323  Sum_probs=152.4

Q ss_pred             HHHHHHHHhhhhhhHHHHHhhhhcccccC------------------------CCCCCchhhHHHHHHHHhhccCCCCCC
Q 017347           49 RLERLYISTRAGKHFQRDIVRGVEGYIVT------------------------GSKQVEIGTKLSEDSRKYGSDNTCTSG  104 (373)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~------------------------~~~~~e~~~~Lg~~m~~~g~e~~~~~~  104 (373)
                      +|++|-..+++++.|+.+|++.++.+++|                        +||+.|.  .||++|++||.|||  ++
T Consensus         8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~--~Lg~~M~~~G~~lg--~d   83 (223)
T cd07615           8 DFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEG--LLGDCMLRYGRELG--EE   83 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchh--HHHHHHHHHHhhCC--CC
Confidence            45555555666666666666666665554                        3677766  79999999999999  99


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhhh
Q 017347          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAKV  180 (373)
Q Consensus       105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K~  180 (373)
                      |+||.||++||+|+++||.++++|+..+.++||+||++++++ +|++|. +        |++|++|||||   |+|..|.
T Consensus        84 S~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~-dik~i~k~--------RKkLe~rRLd~D~~K~r~~k~  154 (223)
T cd07615          84 STFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDK-DLKEIGHH--------LKKLEGRRLDFDYKKKRQGKI  154 (223)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999998 999987 5        55599999999   3333221


Q ss_pred             ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017347          181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE  257 (373)
Q Consensus       181 ~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~e  257 (373)
                              .+.+++.|++||+++++.       +...|.++   +.++    +++|.+||+||++||++|.++|.+|...
T Consensus       155 --------~~eE~~~A~~kfees~E~-------a~~~M~n~le~e~e~----~~~L~~lv~AQl~Yh~~a~eiL~~l~~~  215 (223)
T cd07615         155 --------PDEEIRQAVEKFEESKEL-------AERSMFNFLENDVEQ----VSQLSVLIEAALDYHRQSTEILEDLQSK  215 (223)
T ss_pred             --------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    267999999999999999       99999774   5566    9999999999999999999999999999


Q ss_pred             HHH
Q 017347          258 MLS  260 (373)
Q Consensus       258 L~s  260 (373)
                      +..
T Consensus       216 l~~  218 (223)
T cd07615         216 LQN  218 (223)
T ss_pred             HHH
Confidence            986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2

Probab=100.00  E-value=2.4e-36  Score=278.51  Aligned_cols=181  Identities=21%  Similarity=0.328  Sum_probs=161.9

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhcccccCC------------------------CCCCchhhHHHHHHHHhhccCCCCC
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTS  103 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~Lg~~m~~~g~e~~~~~  103 (373)
                      .+|++|-.++++||.|+.+|+++++.+++|+                        ||+.+.  .||++|++||.|||  +
T Consensus         7 ~~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~--~Lg~~M~~~G~~lg--~   82 (223)
T cd07614           7 DDFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEG--LLGETMIRYGKELG--D   82 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHh--HHHHHHHHHHhhCC--C
Confidence            4788999999999999999999999999974                        456555  79999999999999  9


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhh
Q 017347          104 GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAK  179 (373)
Q Consensus       104 ~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K  179 (373)
                      +|+||.||++||+|+++||.++++|+..+.++||+||++++++ +|++|. +        |++|++|||||   |+|..|
T Consensus        83 dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~-dik~i~k~--------RKkLe~rRLdyD~~K~r~~k  153 (223)
T cd07614          83 ESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDK-DLKEIQHH--------LKKLEGRRLDFDYKKKRQGK  153 (223)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999998 999987 5        55599999999   333322


Q ss_pred             hccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347          180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (373)
Q Consensus       180 ~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~  256 (373)
                      .        .+.+|+.|++||++++|+       +...|.++   ++++    +++|..||+||++||++|.++|.+|+.
T Consensus       154 ~--------~eeelr~a~ekFees~E~-------a~~~M~~il~~e~e~----~~~L~~lveAQl~Yh~qa~eiL~~l~~  214 (223)
T cd07614         154 I--------PDEELRQAMEKFEESKEV-------AETSMHNLLETDIEQ----VSQLSALVDAQLDYHRQAVQILDELAE  214 (223)
T ss_pred             C--------chHHHHHHHHHHHHHHHH-------HHHHHHHHHhCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1        146999999999999999       99999763   5666    999999999999999999999999999


Q ss_pred             HHHH
Q 017347          257 EMLS  260 (373)
Q Consensus       257 eL~s  260 (373)
                      .|..
T Consensus       215 ~l~~  218 (223)
T cd07614         215 KLKR  218 (223)
T ss_pred             HHHH
Confidence            9986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=100.00  E-value=1.6e-34  Score=267.54  Aligned_cols=191  Identities=25%  Similarity=0.333  Sum_probs=154.7

Q ss_pred             CCccccchHHhh-hhHHHHHHHHHhhhhhhHH-------------HHHhhhhccc-ccCCCCCCchhhHHHHHHHHhhcc
Q 017347           34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQ-------------RDIVRGVEGY-IVTGSKQVEIGTKLSEDSRKYGSD   98 (373)
Q Consensus        34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~-------------~~i~r~~e~~-~~~~~~~~e~~~~Lg~~m~~~g~e   98 (373)
                      +|+|...|.++. +|..+|+|+.+|..   |.             +.+.|. +|- ...+||+++.  .||++|++||.|
T Consensus         6 d~df~~le~~~d~~~~~~~~l~~~~~~---~lqpNP~~r~~~~~~~~~~K~-~g~~~~~~~p~~~~--~Lg~~M~~~g~e   79 (223)
T cd07592           6 DDEFLEMERKTDATSKLVEDLIPKTKE---YLQPNPAARAKLAMQNTYSKI-RGQAKSTKYPQPEG--LLGEVMLKYGRE   79 (223)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCchHhHHHHHHHHHHHH-hccCcccCCCCccc--HHHHHHHHHHhh
Confidence            556665555555 56666666655544   32             222222 333 2234788776  799999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH--HH
Q 017347           99 NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV--SK  175 (373)
Q Consensus        99 ~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~--k~  175 (373)
                      ||  ++|+||.||++||+|+.+||.++.+|+..+.++||+||++++++ +|++|. +        |++|+++||||  ++
T Consensus        80 lg--~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~-dik~i~k~--------RKkLe~rRLdyD~~k  148 (223)
T cd07592          80 LG--EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDK-DLKEINHH--------RKKLEGRRLDYDYKK  148 (223)
T ss_pred             cC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHH
Confidence            99  99999999999999999999999999999999999999999998 999987 5        55599999999  33


Q ss_pred             H-hhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          176 R-QAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQIL  251 (373)
Q Consensus       176 r-~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL  251 (373)
                      + ..|.        .+++|+.|++||++++|+       +...|.++   ++++    +++|..||+||++||++|.++|
T Consensus       149 ~k~~k~--------~eeEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e~----~~~L~~lveAQl~Yh~~~~e~L  209 (223)
T cd07592         149 RKQGKG--------PDEELKQAEEKFEESKEL-------AENSMFNLLENDVEQ----VSQLSALVEAQLDYHRQSAEIL  209 (223)
T ss_pred             HhcccC--------chHHHHHHHHHHHHHHHH-------HHHHHHHHHhCchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            3 2221        367999999999999999       99999763   5666    9999999999999999999999


Q ss_pred             HHhHHHHHH
Q 017347          252 DQLEGEMLS  260 (373)
Q Consensus       252 ~~L~~eL~s  260 (373)
                      .+|...|..
T Consensus       210 ~~l~~~L~~  218 (223)
T cd07592         210 EELQSKLQE  218 (223)
T ss_pred             HHHHHHHHH
Confidence            999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=100.00  E-value=5e-34  Score=262.65  Aligned_cols=197  Identities=19%  Similarity=0.260  Sum_probs=169.4

Q ss_pred             CCccccchHHhh-hhHHHHHHHHHhhhhhhHHHHHhhhhc-ccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHH
Q 017347           34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQRDIVRGVE-GYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA  111 (373)
Q Consensus        34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e-~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al  111 (373)
                      +|+|...|.+|. +|.++++|+.+|..   |.++|.|..+ |-.  +.+..+ .+.||++|+.||.+||  ++|+||.||
T Consensus         6 ~ddf~~le~~~d~~~~~~~~l~~~~~~---y~~~l~k~~~~g~~--k~k~~p-~~~Lg~~M~~~g~~lg--~dS~~G~aL   77 (215)
T cd07593           6 SEEFLELEKEIELRKEGMERLHRSTEA---YVEYLSKKKPLLDD--KDKCLP-VEALGLVMINHGEEFP--QDSEYGSCL   77 (215)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCccccc--cccCCh-HHHHHHHHHHHHhhCC--CCChHHHHH
Confidence            789999999999 99999999999988   9999999985 432  234443 3479999999999999  999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhccCCCCcc
Q 017347          112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV---SKRQAKVRETPGNPD  188 (373)
Q Consensus       112 ~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~---k~r~~K~~e~~~~~~  188 (373)
                      ++||+|+.+||.+++.|+..+.++||+||++++.  ++|+|.       +.|++|++|||||   |.|..|.+..  .+.
T Consensus        78 ~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~--~~k~i~-------k~RKkLe~rRLdyD~~ksk~~kak~~--~~~  146 (215)
T cd07593          78 SKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA--EMKEYH-------SARKKLESRRLAYDAALTKSQKAKKE--DSR  146 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcccc--chh
Confidence            9999999999999999999999999999999994  888876       2355699999999   3333232222  246


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          189 LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       189 ~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      ++++|+.|++||++++|+       +...|.++   ++++    +++|..||+||++||++|.++|.+|+..|+.
T Consensus       147 ~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e~----~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~~  210 (215)
T cd07593         147 LEEELRRAKAKYEESSED-------VEARMVAIKESEADQ----YRDLTDLLDAELDYHQQSLDVLREVRQSWPS  210 (215)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            789999999999999999       99999774   5666    9999999999999999999999999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2

Probab=99.97  E-value=6.9e-30  Score=238.36  Aligned_cols=189  Identities=13%  Similarity=0.151  Sum_probs=158.5

Q ss_pred             HHHHHHHHhhhhhhHHHHHhhhhcccccCC--------CCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHH
Q 017347           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG--------SKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ  120 (373)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~--------~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~  120 (373)
                      +|+.|-.++++||.|+.+|.++++.+++|+        .+..+ .+.||++|++||.|||  ++|+||.+|.+||+++++
T Consensus        16 ~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P-~~~L~q~M~~~g~elg--~~s~lg~aL~~~gea~~k   92 (248)
T cd07619          16 DLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLP-LTTLAQCMVEGAAVLG--DDSLLGKMLKLCGETEDK   92 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCC-HHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHH
Confidence            688899999999999999999999999984        11222 2269999999999999  999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhhhc-----------cCCC
Q 017347          121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAKVR-----------ETPG  185 (373)
Q Consensus       121 l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K~~-----------e~~~  185 (373)
                      ||.++.+|+..+.++||+||++++++ ||++|. ++        +.|+++||||   |+|.....           ...+
T Consensus        93 la~a~~~~d~~i~~~fl~PL~~~le~-dlk~I~k~R--------K~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k  163 (248)
T cd07619          93 LAQELILFELQIERDVVEPLYVLAEV-EIPNIQKQR--------KHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAK  163 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHH--------HHHHhhHhhHHHHHHHHHhccccccccccccCCCCc
Confidence            99999999999999999999999998 999998 64        4599999999   33332111           0111


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA---VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       186 ~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~---~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      ..++..++..|+++|+.+++.       ++..|.+   .+.++    ...|..||+||++||+++.++|+.+...+..
T Consensus       164 ~e~lr~e~E~ae~~~e~~kd~-------~~~~m~~~l~~e~e~----~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~  230 (248)
T cd07619         164 ADALREEMEEAANRMEICRDQ-------LSADMYSFVAKEIDY----ANYFQTLIEVQAEYHRKSLELLQSVLPQIKA  230 (248)
T ss_pred             cHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            235567778888888888778       7888865   46666    8899999999999999999999999998887

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=99.97  E-value=2.2e-29  Score=236.63  Aligned_cols=197  Identities=19%  Similarity=0.265  Sum_probs=164.5

Q ss_pred             HHHHHHHHhhhhhhHHHHHhhhhcccccCCC--------CCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHH
Q 017347           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGS--------KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ  120 (373)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~--------~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~  120 (373)
                      +|+.|-..++++|.|..+|+|+++.+++|+.        +.++. ..||++|++||.+||  ++|+||.||++||+++.+
T Consensus        16 ~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~-~~Lg~~M~~~g~~l~--~~s~lg~~L~~~g~a~~~   92 (244)
T cd07595          16 ELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPE-YGLAQSMLESSKELP--DDSLLGKVLKLCGEAQNT   92 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcH-HHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHH
Confidence            4556777889999999999999999988742        12222 279999999999999  999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhc-c------CCCCcchH
Q 017347          121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV---SKRQAKVR-E------TPGNPDLA  190 (373)
Q Consensus       121 l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~---k~r~~K~~-e------~~~~~~~~  190 (373)
                      ||.++.+|+..+.++|++||++++++ +|++|.       +.|+.|+++||||   |+|..|.+ +      ..+.+.++
T Consensus        93 ia~~~~~~d~~i~~~fl~pL~~~le~-dik~i~-------k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~  164 (244)
T cd07595          93 LARELVDHEMNVEEDVLSPLQNILEV-EIPNIQ-------KQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALK  164 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHH
Confidence            99999999999999999999999998 999987       2355599999999   44433322 1      12234668


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhc
Q 017347          191 LKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEA  267 (373)
Q Consensus       191 ~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~se~~~~~s  267 (373)
                      .+++.|+.||+++++.       +...|.++   |.++    +++|..||+||++||++|.++|+.+...|..   .+..
T Consensus       165 eE~e~ae~k~e~~~e~-------~~~~M~~~l~~E~e~----~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~---~~~~  230 (244)
T cd07595         165 DEYEEAELKLEQCRDA-------LATDMYEFLAKEAEI----ASYLIDLIEAQREYHRTALSVLEAVLPELQE---QIEQ  230 (244)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence            8999999999999999       99999874   4555    9999999999999999999999999999987   4444


Q ss_pred             CCC
Q 017347          268 APT  270 (373)
Q Consensus       268 ~~~  270 (373)
                      +++
T Consensus       231 ~~~  233 (244)
T cd07595         231 SPS  233 (244)
T ss_pred             hcc
Confidence            443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1

Probab=99.96  E-value=2.1e-28  Score=228.79  Aligned_cols=188  Identities=14%  Similarity=0.193  Sum_probs=159.7

Q ss_pred             HHHHHHHHhhhhhhHHHHHhhhhcccccCC---------CCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHH
Q 017347           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG---------SKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA  119 (373)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~---------~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~  119 (373)
                      +|+.|-.+++++|.|+.+|+|+++.+++|+         .+-.+.  .||++|++||.|+|  ++|.||.+|.+||++++
T Consensus        16 ~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~p~~--~Lgq~M~e~~~~lg--~~s~~g~aL~~~gea~~   91 (246)
T cd07618          16 DLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKLPLT--ALAQNMQEGSAQLG--EESLIGKMLDTCGDAEN   91 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccCCHH--HHHHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Confidence            677888999999999999999999999874         122333  79999999999999  99999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhhhcc---------CCCC
Q 017347          120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAKVRE---------TPGN  186 (373)
Q Consensus       120 ~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K~~e---------~~~~  186 (373)
                      +|++++.+++..+..+|++||++++++ +|++|. +        |+.|+++||||   |+|..+...         ..+.
T Consensus        92 kla~~~~~~d~~ie~~fl~PL~~~le~-dlk~I~K~--------RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~  162 (246)
T cd07618          92 KLAFELSQHEVLLEKDILDPLNQLAEV-EIPNIQKQ--------RKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKI  162 (246)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHh-HHHHHHHH--------HHHHHhHHhhHHHHHHHHHhccccCccccccccchh
Confidence            999999999999999999999999998 999998 5        44599999999   333322211         0112


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA---VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       187 ~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~---~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      +.+..++..|+.||+++++.       +...|.+   .+.++    +++|..||+||++||+++.++|+.+...+..
T Consensus       163 ~~l~ee~e~a~~k~E~~kD~-------~~~dm~~~l~~e~e~----~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~  228 (246)
T cd07618         163 DMLKEEMDEAGNKVEQCKDQ-------LAADMYNFASKEGEY----AKFFVLLLEAQADYHRKALAVIEKVLPEIQA  228 (246)
T ss_pred             hhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23356899999999999999       7777865   35555    9999999999999999999999999999987

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins

Probab=99.94  E-value=1.4e-25  Score=210.07  Aligned_cols=152  Identities=19%  Similarity=0.257  Sum_probs=130.7

Q ss_pred             HHHHHHHHhhccCCCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTS-----GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR  161 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~-----~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~  161 (373)
                      .||++|+++|.+||  +     +++||.||++||+|+.+||.+|.+++..+.++|++||++++++ +|++|.       +
T Consensus        82 aLs~~m~~~~~~l~--~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~-d~k~i~-------k  151 (242)
T cd07600          82 ALSRAALASSLELK--SLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNT-SFQKAH-------K  151 (242)
T ss_pred             HHHHHHHHHHHHhC--ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------H
Confidence            69999999999999  7     9999999999999999999999999999999999999999998 888877       2


Q ss_pred             HHHHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347          162 MRQEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE  238 (373)
Q Consensus       162 ~r~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve  238 (373)
                      .|++|+++||||   |.+..|.+...+......+++.||++|.+++|+       +...|.++-...++  +++|..||+
T Consensus       152 ~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~-------a~~~M~~il~~~e~--i~~L~~fv~  222 (242)
T cd07600         152 ARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSATEE-------AVELMKEVLDNPEP--LQLLKELVK  222 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhHHH-------HHHHHHHHHhhhHH--HHHHHHHHH
Confidence            356699999999   444444322233456688999999999999999       99999875222333  999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHH
Q 017347          239 AERTYHQRVLQILDQLEGE  257 (373)
Q Consensus       239 Aql~Yh~q~~~iL~~L~~e  257 (373)
                      ||++||.+|.++|.+|...
T Consensus       223 AQl~Yh~~~~e~L~~l~~~  241 (242)
T cd07600         223 AQLAYHKTAAELLEELLSV  241 (242)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1

Probab=99.91  E-value=1.1e-22  Score=189.01  Aligned_cols=186  Identities=15%  Similarity=0.141  Sum_probs=151.5

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCC---------CCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTG---------SKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA  117 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~---------~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a  117 (373)
                      ...+|+   +++.+|....+|.|++=++++|+         .|-.+.  .||++|.+||.++|  ++|.||.+| .+|.+
T Consensus        17 l~~iEk---rvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~--~Ls~~M~es~keLg--~dS~lg~aL-e~~~~   88 (257)
T cd07620          17 LVLVEQ---RVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLM--ALSISMAESFKDFD--AESSIRRVL-EMCCF   88 (257)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHh--HHHHHHHHHHhhCC--CcchHHHHH-HHHHH
Confidence            444555   45556668888988888888864         244555  79999999999999  999999999 55555


Q ss_pred             H-HHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhhhcc----------
Q 017347          118 R-AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAKVRE----------  182 (373)
Q Consensus       118 ~-~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K~~e----------  182 (373)
                      . ++|+++..+|...+..+||+||..+++. ||++|. |+|+        |+.+||||   |+|..+...          
T Consensus        89 ~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~-dL~~I~k~rKk--------L~k~~LD~D~~K~R~~~a~k~s~~~~~~~~  159 (257)
T cd07620          89 MQNMLANILADFEMKVEKDVLQPLNKLSEE-DLPEILKNKKQ--------FAKLTTDWNSAKSRSPQAAGRSPRSGGRSE  159 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hHHHHHHHHHH--------HHhHHhhHHHHHHHHHHhhccccCCccccc
Confidence            5 9999999999999999999999999998 999999 6554        99999999   434322111          


Q ss_pred             ----------CCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          183 ----------TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA---VESQQQRLTLQRLIAMVEAERTYHQRVLQ  249 (373)
Q Consensus       183 ----------~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~---~~~~~~~~~l~~L~~~veAql~Yh~q~~~  249 (373)
                                ..+......+++.|+.||+++++.       +...|.+   .|.++    +++|..||++|++||+++..
T Consensus       160 ~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~kE~e~----a~~l~~lveaQ~~YHrqsl~  228 (257)
T cd07620         160 EVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQ-------YSADLYHFATKEDSY----ANYFIRLLELQAEYHKNSLE  228 (257)
T ss_pred             cccccccccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHH
Confidence                      011113578999999999999999       8999966   46777    99999999999999999999


Q ss_pred             HHHHhHHHHHH
Q 017347          250 ILDQLEGEMLS  260 (373)
Q Consensus       250 iL~~L~~eL~s  260 (373)
                      +|+.+...+..
T Consensus       229 ~Le~~l~~~~~  239 (257)
T cd07620         229 FLDKNITELKE  239 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>smart00721 BAR BAR domain

Probab=99.84  E-value=6e-19  Score=164.67  Aligned_cols=224  Identities=18%  Similarity=0.262  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc-------
Q 017347           11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE-------   83 (373)
Q Consensus        11 ~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e-------   83 (373)
                      |++++.|..|.|..++|++.     .+..|+       .|+.|-...+.++.+.++|+|.++.+++| ++.+.       
T Consensus         2 ~~K~~~R~~q~~~ek~G~~e-----~T~~D~-------~f~~le~~~~~~~~~~~kl~k~~~~y~q~-~~~~~~~~~~~~   68 (239)
T smart00721        2 FKKQFNRAKQKVGEKVGKAE-----KTKLDE-------DFEELERRFDTTEAEIEKLQKDTKLYLQP-NPAVRAKLASQK   68 (239)
T ss_pred             ccchhHHHHHHHHHHhCCCC-----cCcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhHHHHHHHH
Confidence            56789999999999999444     333233       34566666666777999999999999976 44432       


Q ss_pred             -hhhHHHHHHHH--hhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH
Q 017347           84 -IGTKLSEDSRK--YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD  160 (373)
Q Consensus        84 -~~~~Lg~~m~~--~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~  160 (373)
                       +++.|++.+..  +|.++|  .++.||.+|..+|++...++.++..| ..+..+|+.|+..++.+ +++++..      
T Consensus        69 ~~~~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~~~~------  138 (239)
T smart00721       69 KLSKSLGEVYEGGDDGEGLG--ADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLG-EFKEIKK------  138 (239)
T ss_pred             HHHHHHHHHhcCCCCccccC--chhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHH-HhHHHHH------
Confidence             33457777777  688888  88999999999999999999999999 99999999999999987 8888872      


Q ss_pred             HHHHHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 017347          161 RMRQEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMV  237 (373)
Q Consensus       161 ~~r~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~v  237 (373)
                       .+++++.+||||   +.+-.+.+.....+... +|..++++++.+++.+..++.++...|..+......+.+.+|.+|+
T Consensus       139 -~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~  216 (239)
T smart00721      139 -ARKKLERKLLDYDSARHKLKKAKKSKEKKKDE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALI  216 (239)
T ss_pred             -HHHHHHhHHHHHHHHHHHHHHHHHhccCChhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence             244588888888   22211111111111112 5666666666666666666666999998765555444588999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHH
Q 017347          238 EAERTYHQRVLQILDQLEGEML  259 (373)
Q Consensus       238 eAql~Yh~q~~~iL~~L~~eL~  259 (373)
                      .||++||.++..+|.+|...|.
T Consensus       217 ~aq~~y~~~~~~~l~~l~~~l~  238 (239)
T smart00721      217 EAQLNFHRESYKLLQQLQQQLD  238 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999987663

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=99.78  E-value=2.2e-17  Score=151.66  Aligned_cols=218  Identities=19%  Similarity=0.332  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCC-------c
Q 017347           11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV-------E   83 (373)
Q Consensus        11 ~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~-------e   83 (373)
                      |++.|+|..|.|..++|++.     .+..|+       .|+.+....+.++.+.++|.+.++.+......-.       .
T Consensus         1 ~~K~~~R~~q~~~~k~g~~~-----~t~~D~-------~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   68 (229)
T PF03114_consen    1 FKKKINRAKQRVKQKLGKSE-----KTEIDE-------EFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKS   68 (229)
T ss_dssp             -HHHHHHHHHHHHHHHTSHH-----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTH
T ss_pred             CChHHHHHHHHHHHHcCCCC-----CCcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhH
Confidence            57889999999999999332     333343       2333333333333344445554444443211111       2


Q ss_pred             hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017347           84 IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (373)
Q Consensus        84 ~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r  163 (373)
                      ..+.||++|..+|.+++  +++.||.+|..||++...|+..+..+...+...|++||+.++ . +++++...       +
T Consensus        69 ~~~~l~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~-~~~~i~~~-------~  137 (229)
T PF03114_consen   69 PFEELADALIELGSEFS--DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-K-EFKEIKKL-------I  137 (229)
T ss_dssp             HHHHHHHHHHHHHHCTS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-H-HHHHHHHH-------H
T ss_pred             HHHHHHHHHHHHhcccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhHHHHH-------H
Confidence            23379999999999999  888899999999999999999999999999999999999999 4 88887733       3


Q ss_pred             HHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017347          164 QEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE  240 (373)
Q Consensus       164 ~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAq  240 (373)
                      ++++.+|+||   +.+..+.++....+..+.+++.|+.+|+...+.       ....|.........+...+|..|++++
T Consensus       138 kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~-------l~~~l~~l~~~~~~~l~~~l~~~i~~q  210 (229)
T PF03114_consen  138 KKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEE-------LKEELPKLFAKRQDILEPCLQSFIEAQ  210 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477777777   333333332211121255666666666666666       788887653222222338999999999


Q ss_pred             HHHHHHHHHHHHHhHHHH
Q 017347          241 RTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       241 l~Yh~q~~~iL~~L~~eL  258 (373)
                      ..||.++.++|.++...|
T Consensus       211 ~~~~~~~~~~l~~l~~~l  228 (229)
T PF03114_consen  211 LQYFQQLYQILEELQPQL  228 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999999876

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=2.6e-14  Score=142.09  Aligned_cols=222  Identities=18%  Similarity=0.228  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhH
Q 017347            8 ATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTK   87 (373)
Q Consensus         8 ~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~   87 (373)
                      |.-+++.+.|+++.|+-++|   +  .|.++--+.|..    .-|+......++..||++.+.+..+..    .++....
T Consensus         3 ~k~~kKa~sRa~ekvlqk~g---~--~~~TkD~~FE~~----~~~f~~~e~e~~kLqkd~k~y~~av~a----m~~a~~~   69 (460)
T KOG3771|consen    3 AKGVQKALNRAPEKVLQKLG---K--VDETKDEQFEQE----ERNFNKQEAEGKRLQKDLKNYLDAVRA----MLAASKK   69 (460)
T ss_pred             chhhHHHhccccHHHHhhcC---C--cccccchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence            44578889999999999999   4  466663333432    223333334445566666555444321    1233347


Q ss_pred             HHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHH
Q 017347           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEA  166 (373)
Q Consensus        88 Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~l  166 (373)
                      |.++|+..=....  ++..|..+      +...+...+.+|+..+.++.+.||..|+.  .+.+|. .++| ..+.+..+
T Consensus        70 l~e~l~eiy~p~~--~g~~~l~~------v~~~~d~l~~d~~~~l~d~vl~pl~~~~~--~fpdik~~i~K-R~~Kl~Dy  138 (460)
T KOG3771|consen   70 LAESLQEIYEPDW--PGRDYLQA------VADNDDLLWKDLDQKLVDQVLLPLDTYLG--QFPDIKKAIAK-RGRKLVDY  138 (460)
T ss_pred             HHHHHHHhcCccc--ccHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHhhh--hchhHHHHHHh-hcchhhhh
Confidence            8888886544333  44444433      35667788999999999999999999995  899999 4444 44445667


Q ss_pred             HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (373)
Q Consensus       167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q  246 (373)
                      ++.|.-|.+-+.+++.+      +.++..||++|+...+.+..|+.++...|..+.+-+..+.+.-+.+|+..++.||..
T Consensus       139 D~~r~~~~kvq~~k~kd------~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~E  212 (460)
T KOG3771|consen  139 DSARHSFEKLQAKKKKD------EAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKE  212 (460)
T ss_pred             HHHHHHHHHHHHhcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHH
Confidence            77777773332222222      347777999999999999999999999998887777666677889999999999999


Q ss_pred             H---HHHHHHhHHHHH
Q 017347          247 V---LQILDQLEGEML  259 (373)
Q Consensus       247 ~---~~iL~~L~~eL~  259 (373)
                      .   +..|.++...+.
T Consensus       213 mskl~~~L~~v~~kl~  228 (460)
T KOG3771|consen  213 MSKLYKNLYDVLDKLF  228 (460)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9   555655555443

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=99.66  E-value=1.1e-14  Score=129.61  Aligned_cols=186  Identities=23%  Similarity=0.374  Sum_probs=142.8

Q ss_pred             hHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 017347           62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR  141 (373)
Q Consensus        62 ~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~  141 (373)
                      .+.++|++.+..+.+...........||+.|.++|..++..++.++|.+|..||.+...|+..+..+...+...|++||+
T Consensus         7 ~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~   86 (194)
T cd07307           7 KLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPLK   86 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444433321112233447999999999999843333599999999999999999999999999999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 017347          142 AMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV  221 (373)
Q Consensus       142 ~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~  221 (373)
                      .|+.+ +++.++..+++|++.|.+++..+..+.+.+.+...       ..++..++.+++++++.+..+..++...|..+
T Consensus        87 ~~~~~-~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~-------~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~  158 (194)
T cd07307          87 EYLKK-DLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKD-------SSKLAEAEEELQEAKEKYEELREELIEDLNKL  158 (194)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99986 99999977777888888887777776333222111       23778888888888888888888899999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347          222 ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (373)
Q Consensus       222 ~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~  255 (373)
                      ...........|..|++++..||.++..+|.++.
T Consensus       159 ~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~  192 (194)
T cd07307         159 EEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL  192 (194)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            7777666688999999999999999999987764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=99.54  E-value=2.8e-13  Score=129.62  Aligned_cols=155  Identities=19%  Similarity=0.281  Sum_probs=126.2

Q ss_pred             HHHHHHHHhh---ccC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347           87 KLSEDSRKYG---SDN--TCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR  161 (373)
Q Consensus        87 ~Lg~~m~~~g---~e~--~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~  161 (373)
                      .|+.....+.   .++  .....+++|.+|.+|+.++.+|+.+|.+++..|...|+.||+..|+. +++.+.       +
T Consensus       125 ALSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~-~~~~a~-------k  196 (289)
T PF10455_consen  125 ALSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT-DFKKAN-------K  196 (289)
T ss_pred             HHHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------H
Confidence            5777777777   555  11255799999999999999999999999999999999999999986 666654       4


Q ss_pred             HHHHHHHHHHHH--HHHhhhh-ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347          162 MRQEAEAQAIEV--SKRQAKV-RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE  238 (373)
Q Consensus       162 ~r~~le~rrld~--k~r~~K~-~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve  238 (373)
                      +|+++++.||+|  .|-..|. ......+....+|..||++|....+.       |...|..+-...+.  ++.|..|+.
T Consensus       197 ~RkkV~~sRL~~D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~aTee-------Av~~Mk~vl~~~e~--l~~Lk~lv~  267 (289)
T PF10455_consen  197 ARKKVENSRLQFDAARANLKNKAKPEKEEQLRVELEQAEDEFVSATEE-------AVEVMKEVLDNSEP--LRLLKELVK  267 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCcccCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcch--HHHHHHHHH
Confidence            577799999998  2222232 23334456678899999999999999       99999998655555  899999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHH
Q 017347          239 AERTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       239 Aql~Yh~q~~~iL~~L~~eL  258 (373)
                      ||+.||..|.+.|..+...+
T Consensus       268 AQl~Yhk~aae~L~~~~~~l  287 (289)
T PF10455_consen  268 AQLEYHKKAAEALSELLKSL  287 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999987765

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.53  E-value=1.3e-14  Score=103.35  Aligned_cols=49  Identities=33%  Similarity=0.692  Sum_probs=45.4

Q ss_pred             EeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCee
Q 017347          311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE  359 (373)
Q Consensus       311 alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve  359 (373)
                      |+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            7899999999999999999999999999999999999999999999996

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.38  E-value=6.8e-13  Score=96.66  Aligned_cols=53  Identities=36%  Similarity=0.718  Sum_probs=48.2

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEE-eecCCCeEEEEeCCeeeEecCCCeee
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVR-KVTNNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~-~~~~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      .|+|++||.+..+++|+|.+||+|.|+ +..++|||.|+.+|+.||||.+||+.
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE   54 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence            489999999999999999999999999 77888999999999999999999985

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.36  E-value=2.8e-10  Score=109.92  Aligned_cols=55  Identities=24%  Similarity=0.498  Sum_probs=49.4

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEe-CCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~-~g~~G~fP~~Yve~l  361 (373)
                      ..++|||||.++..+||+|+.||.|.+++.. .-||+.|+. +|+.|+||+|||+-+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            5789999999999999999999999977765 559999999 599999999999854

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=99.25  E-value=7.2e-12  Score=129.37  Aligned_cols=56  Identities=27%  Similarity=0.491  Sum_probs=53.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      ..+.|.|+|||.+++.+||+|.+||+|.|+...++|||.|..+|+.||||.+||..
T Consensus      1050 k~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1050 KNPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             CCcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence            34789999999999999999999999999999999999999999999999999975

>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]

Probab=99.24  E-value=4.1e-12  Score=126.39  Aligned_cols=56  Identities=32%  Similarity=0.696  Sum_probs=53.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      +-.++|-|.|.+.+.+||+|.+||+|+|....+.|||+|..+|+.||||+|||..+
T Consensus        17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~ei   72 (661)
T KOG2070|consen   17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREI   72 (661)
T ss_pred             ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999875

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=99.22  E-value=2.7e-12  Score=124.92  Aligned_cols=59  Identities=22%  Similarity=0.362  Sum_probs=55.0

Q ss_pred             CCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ....++||||||++..++||+|++||||+|++..+.+||+|++++..|+||+|||....
T Consensus       213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence            34568999999999999999999999999999999999999999999999999998754

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.21  E-value=2.1e-11  Score=86.24  Aligned_cols=46  Identities=30%  Similarity=0.620  Sum_probs=42.6

Q ss_pred             EEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecC
Q 017347          310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPF  355 (373)
Q Consensus       310 ~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~  355 (373)
                      +|+|||.+..+++|+|.+||.|.|++..++|||.|+.  +|+.||||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            5899999999999999999999999999999999999  379999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>smart00326 SH3 Src homology 3 domains

Probab=99.18  E-value=5.6e-11  Score=85.55  Aligned_cols=55  Identities=31%  Similarity=0.561  Sum_probs=51.0

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC-CeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~-g~~G~fP~~Yve~l  361 (373)
                      ..++|+|+|.+..+++|+|.+||+|.|+...++|||.+++. |+.||||.+||+.+
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence            46899999999999999999999999999988999999996 99999999999753

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.8e-09  Score=112.43  Aligned_cols=58  Identities=33%  Similarity=0.705  Sum_probs=53.4

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee--cCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~--~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ...+|+|||.|++.+.+|++|.+||||.|-..  ..+||+.|+.+|+.||||.|||+.+.
T Consensus       692 ~~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~  751 (1118)
T KOG1029|consen  692 DTVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIP  751 (1118)
T ss_pred             ceEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcc
Confidence            46789999999999999999999999998765  48899999999999999999999874

>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)

Probab=99.16  E-value=4.5e-09  Score=96.49  Aligned_cols=157  Identities=15%  Similarity=0.208  Sum_probs=113.7

Q ss_pred             HHHHHHHHhhccCCCCCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTL----SKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM  162 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~----g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~  162 (373)
                      .++..+.++|.  + .+|...    |.+|.+|+.+...|+..+..|...+...++.||.+|+.. |++++++.|++||+.
T Consensus        40 ~Fa~~L~~f~~--~-~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK~  115 (202)
T cd07606          40 AFAESLEEFGG--G-HDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADT-DLQEVKDARRRFDKA  115 (202)
T ss_pred             HHHHHHHHhcC--C-CCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            57788888873  2 233233    368999999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 017347          163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT  242 (373)
Q Consensus       163 r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~  242 (373)
                      ..++++-+--+..-..+.+.        .+++.|++.+...+.......-+..-.+..+..-...=.|..|..|+.|+.+
T Consensus       116 s~~yd~al~K~~~l~k~~k~--------~~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~t  187 (202)
T cd07606         116 SLDYEQARSKFLSLTKDAKP--------EILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLA  187 (202)
T ss_pred             HHHHHHHHHHHHhccccCch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999877666222111111        1444555555555544322222244444444433333348899999999999


Q ss_pred             HHHHHHHHHHHhH
Q 017347          243 YHQRVLQILDQLE  255 (373)
Q Consensus       243 Yh~q~~~iL~~L~  255 (373)
                      |+++.++++.++.
T Consensus       188 FF~qG~ell~~l~  200 (202)
T cd07606         188 FFKSGYELLRQLE  200 (202)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.12  E-value=1.3e-10  Score=82.64  Aligned_cols=51  Identities=35%  Similarity=0.644  Sum_probs=47.9

Q ss_pred             EEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCC-eeeEecCCCee
Q 017347          309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-KAGWFPFGYIE  359 (373)
Q Consensus       309 ~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g-~~G~fP~~Yve  359 (373)
                      ++|+|+|.+..+++|+|.+||+|.|+...++|||.+++.+ +.||||.+||+
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6899999999999999999999999999889999999955 99999999986

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=99.12  E-value=8.5e-11  Score=109.65  Aligned_cols=57  Identities=33%  Similarity=0.638  Sum_probs=53.1

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      .|.|-|.|.++.++||+|.+|+.|.|++++.+|||+|..+|+.||||+|||....+.
T Consensus       109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds  165 (379)
T KOG4226|consen  109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDS  165 (379)
T ss_pred             ceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccc
Confidence            378899999999999999999999999999999999999999999999999876544

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=3.9e-11  Score=124.50  Aligned_cols=55  Identities=31%  Similarity=0.562  Sum_probs=51.7

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..+.++|||.+++++||+|.+||+|.|+.+.+.+||.|+++|..|+||+|||..+
T Consensus      1054 ~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred             ceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence            4567899999999999999999999999999999999999999999999999654

>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3

Probab=99.11  E-value=1.3e-08  Score=94.88  Aligned_cols=190  Identities=15%  Similarity=0.178  Sum_probs=137.5

Q ss_pred             hhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017347           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA  137 (373)
Q Consensus        58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl  137 (373)
                      ..++..+|+..+..+.+.....-+..|    ++++.... +.  .++..+..+.-.|-.+...|......++..+...|+
T Consensus        25 ~~~~kL~Ke~K~Y~dav~~m~~a~~~i----s~~l~~~~-~~--~~~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~~vl   97 (225)
T cd07590          25 STTKKLYKDMKKYIEAVLALSKAEQRL----SQDLASGP-LC--EDNDELRNLVEALDSVTTQLDKTVQELVNLIQKTFI   97 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHhcc-cC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345557777777777665433334444    44444422 11  133456667777777888888888999999999999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017347          138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAA  217 (373)
Q Consensus       138 ~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~  217 (373)
                      +||.+|+.  .+++|+...++.++...+++..|..+++-..|...+    ....+|..||..|+.+++.+..++.++...
T Consensus        98 ~Pl~~~~s--~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~----~~~~KL~kae~el~~Ak~~ye~~N~~L~~E  171 (225)
T cd07590          98 EPLKRLRS--VFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTG----PNLAKLEQAEKALAAARADFEKQNIKLLEE  171 (225)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999996  899999443334444555565555554433332211    125799999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          218 MAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       218 m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      |.....-.-.+....+.+|+-+|+.||......+.+|+..+..
T Consensus       172 LP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~  214 (225)
T cd07590         172 LPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDN  214 (225)
T ss_pred             hHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9887665556667799999999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins

Probab=99.10  E-value=1.4e-08  Score=93.15  Aligned_cols=156  Identities=12%  Similarity=0.200  Sum_probs=115.2

Q ss_pred             HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l  166 (373)
                      .+++.+-..|.++.  +|...|.+|.+||.+.+.|...+..+...+....++||+.|+.+ ||+.+++.+++||+...++
T Consensus        41 ~F~~~L~~~~~~~~--~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~-dL~~vKE~kk~Fdk~s~~y  117 (200)
T cd07603          41 LFVNSLNDLSDYFR--DDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKE-DIKKVKESKKHFEKISDDL  117 (200)
T ss_pred             HHHHHHHHHhcccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence            67888888888775  66678999999999999999999999999999999999999999 9999999999999999998


Q ss_pred             HHHHHHHHH-HhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ  245 (373)
Q Consensus       167 e~rrld~k~-r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~  245 (373)
                      ++-.--+.. .+.|  .        .+++.+...+...+..+....=+..-.+..+..-...-.|.-|..|+.|+.+|++
T Consensus       118 d~al~k~~~~~K~K--~--------~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~  187 (200)
T cd07603         118 DNALVKNAQAPRSK--P--------QEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFH  187 (200)
T ss_pred             HHHHHHHhccCCCC--H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            875554411 1112  1        1455555555555544222111123233333332222238899999999999999


Q ss_pred             HHHHHHHHhH
Q 017347          246 RVLQILDQLE  255 (373)
Q Consensus       246 q~~~iL~~L~  255 (373)
                      +..+++.++.
T Consensus       188 qG~el~~dl~  197 (200)
T cd07603         188 QGYDLLEDLE  197 (200)
T ss_pred             hHHHHHHhhc
Confidence            9999998874

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins

Probab=99.10  E-value=1.3e-08  Score=94.13  Aligned_cols=180  Identities=19%  Similarity=0.228  Sum_probs=127.4

Q ss_pred             hhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHH-hhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017347           59 AGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA  137 (373)
Q Consensus        59 ~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~-~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl  137 (373)
                      .++..+|.+.+..+++...-.-++.    ++++|.. |+.+..       |.  -.+..+...+...+.+|...+...++
T Consensus        27 ~~~kL~k~~K~Y~~av~~m~~~q~~----~~e~l~~lY~p~~~-------~~--~~~~~v~e~~d~~~~~l~~~l~~~Vl   93 (211)
T cd07588          27 SANRLQKDLKNYLNSVRAMKQASKT----LSETLKELYEPDWP-------GR--EHLASIFEQLDLLWNDLEEKLSDQVL   93 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCccc-------cH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455777777777766532223333    4555532 222211       21  23355678888999999999999999


Q ss_pred             HHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017347          138 EPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA  216 (373)
Q Consensus       138 ~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~  216 (373)
                      .||.+|+.  .+++|+ ..++ -.+.+..+++.|..+.+-+.|...      .+.+|..||.+++.+++.+..|+.++..
T Consensus        94 ~Pl~~~~s--~f~~i~k~I~K-R~~KllDYDr~r~~~~kL~~K~~k------de~KL~kae~el~~Ak~~Ye~lN~~L~~  164 (211)
T cd07588          94 GPLTAYQS--QFPEVKKRIAK-RGRKLVDYDSARHNLEALKAKKKV------DDQKLTKAEEELQQAKKVYEELNTELHE  164 (211)
T ss_pred             HHHHHHHH--HHHHHHHHHHH-HhhHHHhHHHHHHHHHHHHhcccc------cHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999996  899998 4444 222233344444444232222111      1569999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       217 ~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      .|.....-.-.+....+.+|+.+|..||..+..+..+|...|..
T Consensus       165 ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~  208 (211)
T cd07588         165 ELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDG  208 (211)
T ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99987766666777899999999999999999999999887754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=99.09  E-value=1.3e-08  Score=94.43  Aligned_cols=197  Identities=17%  Similarity=0.270  Sum_probs=135.6

Q ss_pred             chHHhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHH
Q 017347           40 DEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRAR  118 (373)
Q Consensus        40 ~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~  118 (373)
                      .|..+. ....|+||.+..++       ++....++.       .+-..+++.+.+.|..+-+..+...|.+|.+||.+.
T Consensus         7 lee~l~~~~~~l~Kl~K~~k~-------~~~~g~~~~-------~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l   72 (215)
T cd07604           7 LEESLEGDRVGLQKLKKAVKA-------IHNSGLAHV-------ENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFT   72 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHH-------HHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHH
Confidence            344444 45567777766554       333333222       122246666777776553122225899999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH-HHHhhhhcc------CCCCcchH
Q 017347          119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV-SKRQAKVRE------TPGNPDLA  190 (373)
Q Consensus       119 ~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~-k~r~~K~~e------~~~~~~~~  190 (373)
                      ..|+..+..|..++...++.||..|+.+ |+++++ ++|++||+.+..++..+--+ +.|+...++      +...+++.
T Consensus        73 ~El~~~~~~L~~~~~~~i~~pL~~f~k~-dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~  151 (215)
T cd07604          73 KELAALFKNLMQNLNNIIMFPLDSLLKG-DLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIA  151 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHH
Confidence            9999999999999999999999999998 999998 99999999999887664333 211111111      11113456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017347          191 LKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       191 ~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL  258 (373)
                      .+|..+...|....=.       ..-.+..+..-+-.=.|+.|..|+.|+++|+++..+.++++..-+
T Consensus       152 ~~l~~~R~~F~~~~~~-------yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~  212 (215)
T cd07604         152 EEMEKERRMFQLQMCE-------YLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI  212 (215)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7888888888877655       333444444444333488999999999999999999999887543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1

Probab=99.09  E-value=1.7e-08  Score=92.31  Aligned_cols=157  Identities=13%  Similarity=0.203  Sum_probs=113.5

Q ss_pred             HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l  166 (373)
                      .+++.+.++|.++.  +|...|.+|.+|+.+...|...+..+..++...+++||.+|+.+ |++.+++.+|+||+....+
T Consensus        41 ~F~~~L~~f~~~~~--~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~-dl~~vKe~kK~FdK~s~~~  117 (200)
T cd07639          41 AFVDGLCDLAHHGP--KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKE-DLRGFRDARKEFERGAESL  117 (200)
T ss_pred             HHHHHHHHHhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHhhhHhhcchhH
Confidence            57888888888766  67678999999999999999999999999999999999999999 9999998899999998888


Q ss_pred             HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (373)
Q Consensus       167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q  246 (373)
                      ++..--..+-. |.+        ..+++.|.+.++-.+.......=+....+..+++-...-.|..|.+|+.|+.+|+++
T Consensus       118 d~al~K~~~~~-k~k--------~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~q  188 (200)
T cd07639         118 EAALQHNAETP-RRK--------AQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQ  188 (200)
T ss_pred             HHHHHHHhhcc-ccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76422221100 111        124444444444444442111111233333333333333388999999999999999


Q ss_pred             HHHHHHHhH
Q 017347          247 VLQILDQLE  255 (373)
Q Consensus       247 ~~~iL~~L~  255 (373)
                      .++++.+|.
T Consensus       189 G~ell~~l~  197 (200)
T cd07639         189 GHEALSALH  197 (200)
T ss_pred             HHHHHHhhc
Confidence            999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=99.06  E-value=1.8e-10  Score=113.60  Aligned_cols=57  Identities=28%  Similarity=0.560  Sum_probs=54.6

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ..++|+|+|.++...||+|.+||+|.|+.++|.+|++|+.+|+.|+||++||+.+.+
T Consensus       231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  231 RAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP  287 (489)
T ss_pred             chhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence            458999999999999999999999999999999999999999999999999999876

>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2

Probab=99.06  E-value=1.9e-08  Score=92.45  Aligned_cols=182  Identities=12%  Similarity=0.141  Sum_probs=132.5

Q ss_pred             hhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017347           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA  137 (373)
Q Consensus        58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl  137 (373)
                      ..++..+++..+..+++...-.-|+.+++-|.+   -|+.+.|  ..+.+.       .....+..++.+|...+...+|
T Consensus        26 ~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e---~Y~~~~~--~~~~~~-------~v~e~~d~~~~~~~~~~~~~vL   93 (211)
T cd07612          26 SDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQD---IYEPDWD--GHEDLG-------AIVEGEDLLWNDYEAKLHDQAL   93 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCcC--cccHHH-------HHHhccHHHHHHHHHHHHHHHH
Confidence            345567777777777654332344444333333   3566655  333332       3345666799999999999999


Q ss_pred             HHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017347          138 EPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA  216 (373)
Q Consensus       138 ~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~  216 (373)
                      +||.+|+.  .+.+|+ ..+||. +....+++.|..+++-+.|...+      +.+|..||+.++.+++.+..|+.++..
T Consensus        94 ~pi~~~~s--~f~~i~~~i~KR~-~KllDYD~~R~~~~kl~~k~~kD------~~KL~kAe~el~~Ak~~ye~lN~~L~~  164 (211)
T cd07612          94 RTMESYMA--QFPDVKERVAKRG-RKLVDYDSARHHLEALQNAKKKD------DAKIAKAEEEFNRAQVVFEDINRELRE  164 (211)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999996  899999 555533 33556666777774444332222      569999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       217 ~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      .|.....-.-.+....+.+|+.+|..||..+..+..+|...|..
T Consensus       165 ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~  208 (211)
T cd07612         165 ELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKK  208 (211)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99887666666678899999999999999999999998887653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like

Probab=99.05  E-value=2.4e-08  Score=91.55  Aligned_cols=160  Identities=14%  Similarity=0.225  Sum_probs=109.2

Q ss_pred             HHHHHHHHhhccCCCC--CCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCT--SGN--TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM  162 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~--~~s--~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~  162 (373)
                      .++..+.+.|-++-+.  .|+  ..+.+|.+|+.....|.+.+..|..++...++.||..|+.+ |++.+++.+|+||+.
T Consensus        41 ~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL~~f~k~-dl~~vKe~kK~FDK~  119 (207)
T cd07634          41 KFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKE-QIGAAKDGKKKFDKE  119 (207)
T ss_pred             HHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccchhHH
Confidence            3455555555443310  233  47999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 017347          163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT  242 (373)
Q Consensus       163 r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~  242 (373)
                      ...+++.+--...-.++.++.        +++.|.+.++..+..+....=+..-.+..+.+-...=.|..|.+|+.|+.+
T Consensus       120 se~y~~aleK~l~l~~~kk~~--------~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~t  191 (207)
T cd07634         120 SEKYYSILEKHLNLSAKKKES--------HLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFT  191 (207)
T ss_pred             HhHHHHHHHHHHhccccCCcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987554442222221222        444444444444444111111123333333333322238899999999999


Q ss_pred             HHHHHHHHHHHhH
Q 017347          243 YHQRVLQILDQLE  255 (373)
Q Consensus       243 Yh~q~~~iL~~L~  255 (373)
                      |+++.++++.++.
T Consensus       192 ff~qG~el~~dl~  204 (207)
T cd07634         192 FYHEGYELAQEFA  204 (207)
T ss_pred             HHHhHHHHHHhhc
Confidence            9999999998874

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain

>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins

Probab=99.01  E-value=2e-07  Score=85.61  Aligned_cols=192  Identities=14%  Similarity=0.230  Sum_probs=126.9

Q ss_pred             hHHhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC-CC-CCC--hHHHHHHHHH
Q 017347           41 EAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT-CT-SGN--TLSKAALSYG  115 (373)
Q Consensus        41 e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~-~~-~~s--~~g~al~~~g  115 (373)
                      |.|+. -...+++|+.-.+..-...++..++.=              .+++....++-++- ++ .|+  ..|.+|.+||
T Consensus         8 E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~--------------~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~   73 (207)
T cd07602           8 EAELERTNKAIKELIKECKNLISATKNLSKAQR--------------SFAQTLQNFKFECIGETQTDDEIEIAESLKEFG   73 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhccCCcCcccHHHHHHHHHHHH
Confidence            44555 355666666555543333333322222              35555555654432 00 222  4799999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHH
Q 017347          116 RARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDA  195 (373)
Q Consensus       116 ~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~  195 (373)
                      .+...|+..+..|...+...++.||..|... |+.++++.|++||+...++++-+--+..-..+.++. ...+++..|..
T Consensus        74 ~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k~-dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~-~~~ea~~~l~~  151 (207)
T cd07602          74 RLIETVEDERDRMLENAEEQLIEPLEKFRKE-QIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKEN-QLQEADAQLDM  151 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCch-HHHHHHHHHHH
Confidence            9999999999999999999999999999998 999999999999999998887666552221121222 01223344444


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347          196 AEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (373)
Q Consensus       196 ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~  255 (373)
                      +...|....=.       ..-.+..+..-...=.|.-|.+|+.|+++|+++.++++.++.
T Consensus       152 ~r~~f~~~~l~-------Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~  204 (207)
T cd07602         152 ERRNFHQASLE-------YVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFK  204 (207)
T ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            44455544433       344444444444333488999999999999999999998874

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=99.01  E-value=8.8e-10  Score=111.82  Aligned_cols=60  Identities=32%  Similarity=0.542  Sum_probs=52.9

Q ss_pred             CCceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      .....|++-|||-+.+-.||||+.||+|.|+...  |.|||+|+.+|+.||||++||+.-.+
T Consensus       803 ~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~~  864 (865)
T KOG2996|consen  803 KVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDDP  864 (865)
T ss_pred             ceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccCC
Confidence            3456788899999999999999999999999985  57999999999999999999986543

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3

Probab=98.98  E-value=1.7e-07  Score=86.00  Aligned_cols=157  Identities=14%  Similarity=0.238  Sum_probs=114.3

Q ss_pred             HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l  166 (373)
                      .++..+.+++.++.  .|...+.+|.+||++.+.|...+..+...+....++||+.|+.+ ||..+++.+++||+...++
T Consensus        41 ~F~~~l~d~~~~~~--gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~-dL~~~KE~rK~Fdk~se~y  117 (200)
T cd07637          41 LFVSGIRDLSQQCK--KDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE-DVRKFKETKKQFDKVREDL  117 (200)
T ss_pred             HHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            56777777777766  77789999999999999999999999999999999999999999 9999998899999988887


Q ss_pred             HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (373)
Q Consensus       167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q  246 (373)
                      +.-.--+  -+.|.+++       .+++.|...+.+.+..+....=+..-.+..+..-...-.|..|.+|+.|+.+|+++
T Consensus       118 d~al~k~--~~~k~kk~-------~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~q  188 (200)
T cd07637         118 EIALVKN--AQAPRHKP-------HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQ  188 (200)
T ss_pred             HHHHHHH--hhcCCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6433222  11221211       24555555555555553222222333333343333333388999999999999999


Q ss_pred             HHHHHHHhH
Q 017347          247 VLQILDQLE  255 (373)
Q Consensus       247 ~~~iL~~L~  255 (373)
                      .++++.++.
T Consensus       189 G~el~~~~~  197 (200)
T cd07637         189 GYSLLHELD  197 (200)
T ss_pred             HHHHHHhhc
Confidence            999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins

Probab=98.97  E-value=8.7e-08  Score=88.65  Aligned_cols=164  Identities=13%  Similarity=0.185  Sum_probs=118.8

Q ss_pred             HHHHHHHHhhcc-CC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSD-NT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (373)
Q Consensus        87 ~Lg~~m~~~g~e-~~-~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~  164 (373)
                      .++.....++.- |+ +.+|...+.+|.+|+.+...|+..+..|..++...++.||.+|+.+ |+++++..|++||+...
T Consensus        41 ~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK~s~  119 (215)
T cd07601          41 ALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMES-DLAEIMTLKELFKAASN  119 (215)
T ss_pred             HHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhH
Confidence            466677777543 22 2345456799999999999999999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHH-HhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017347          165 EAEAQAIEVSK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY  243 (373)
Q Consensus       165 ~le~rrld~k~-r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Y  243 (373)
                      ++++-+--+.+ .+.|..+. -..+++.+|..+...|..+.=+       ..-.+..+..-...=.|..|.+|+.|+.+|
T Consensus       120 ~~d~al~K~~~l~k~k~~~~-~~~Ea~~~l~~~R~~F~~~~ld-------Yv~~ln~iq~kKk~e~Le~ll~~m~A~~tf  191 (215)
T cd07601         120 DHDGVLSKYSRLSKKRENTK-VKIEVNDEVYACRKKQHQTAMN-------YYCALNLLQYKKTTALLEPMIGYLQAQIAF  191 (215)
T ss_pred             HHHHHHHHHhhCCcCCCchH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987666622 11121111 0124566777777777776555       333343333333222388999999999999


Q ss_pred             HHHHHHHHH-HhHHHHH
Q 017347          244 HQRVLQILD-QLEGEML  259 (373)
Q Consensus       244 h~q~~~iL~-~L~~eL~  259 (373)
                      +++.++++. ++..=+.
T Consensus       192 f~qG~ell~~~~~pf~~  208 (215)
T cd07601         192 FKMGPEMFTRQTEEFLS  208 (215)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            999999997 6655443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=98.96  E-value=3.1e-10  Score=111.64  Aligned_cols=57  Identities=35%  Similarity=0.568  Sum_probs=52.8

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ..+|+++|.|++++++||+|++||+|.++.+.  +-|||+|+.+|+.|+||-|||+.+.
T Consensus       261 Keycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  261 KEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             hhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence            35899999999999999999999999988874  7799999999999999999999875

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2

Probab=98.94  E-value=8.9e-08  Score=87.75  Aligned_cols=162  Identities=15%  Similarity=0.247  Sum_probs=113.9

Q ss_pred             CchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHH
Q 017347           82 VEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYD  160 (373)
Q Consensus        82 ~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~  160 (373)
                      ++..+.||..|+     +.  ++...|.+|++||.+...|......|..++...+..||..|+.+ |++..+ ++|+.+|
T Consensus        43 ~~~L~~LG~~~l-----~~--dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~-dLr~vK~d~KK~fd  114 (215)
T cd07642          43 TQALEKFGSNCV-----CR--DDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKG-DLKGVKGDLKKPFD  114 (215)
T ss_pred             HHHHHHHhhccc-----CC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhHHHHHHHHH
Confidence            344555666444     33  55578999999999999999999999999999999999999999 999998 9999999


Q ss_pred             HHHHHHHHHHHHH-H--HHhhhhccC----CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH
Q 017347          161 RMRQEAEAQAIEV-S--KRQAKVRET----PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL  233 (373)
Q Consensus       161 ~~r~~le~rrld~-k--~r~~K~~e~----~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L  233 (373)
                      +.++.+|+...-. +  ++.+|-.+-    ....++..+|..+..-|+...=+|       .-.+..+..-+-+=.|+.+
T Consensus       115 K~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dY-------v~~in~lk~kk~~eiL~~l  187 (215)
T cd07642         115 KAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEY-------LLKVNEIKIKKGVDLLQNL  187 (215)
T ss_pred             HHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHH
Confidence            9999999876422 1  111221110    001233456666666666554331       1112222222222237799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHH
Q 017347          234 IAMVEAERTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       234 ~~~veAql~Yh~q~~~iL~~L~~eL  258 (373)
                      ..+..||.+|+++..+.+++|..-+
T Consensus       188 ~~~~~AQ~tfF~qG~k~le~l~p~~  212 (215)
T cd07642         188 IKYFHAQCNFFQDGLKAVETLKPSI  212 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999987644

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2

Probab=98.94  E-value=1e-07  Score=87.22  Aligned_cols=154  Identities=11%  Similarity=0.221  Sum_probs=110.9

Q ss_pred             HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l  166 (373)
                      .++..+..++.-.+  +|...|.+|.+|+.+...|+..+..|...+....+.||..|+.. |+.++++.+++||+...+.
T Consensus        41 ~F~~~l~d~~~~~~--~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~k~-dl~~vke~kk~FdK~s~~~  117 (200)
T cd07638          41 QFMNGIRDLAQYSS--KDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFVKE-DLRKFKDAKKQFDKVSEEK  117 (200)
T ss_pred             HHHHHHHHHHHhCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHH
Confidence            46776666666545  66678999999999999999999999999999999999999998 9999999999999977544


Q ss_pred             HHHHHHHHHHhh---hhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQA---KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY  243 (373)
Q Consensus       167 e~rrld~k~r~~---K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Y  243 (373)
                      +.   .+ .|.+   |.++. ...++...|..+...|..+.=+       ....+..+++-...-.|.-|.+|+.|+..|
T Consensus       118 ~~---aL-~K~~~~~k~k~~-e~eEa~~~l~~~r~~F~~~~ld-------Yv~~ln~vq~kKkfe~le~ll~~m~a~~tf  185 (200)
T cd07638         118 EN---AL-VKNAQVQRNKQH-EVEEATNILTATRKCFRHIALD-------YVLQINVLQSKRRSEILKSMLSFMYAHLTF  185 (200)
T ss_pred             HH---HH-HHhccCCcCchH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32   22 1111   11111 0122334555555556555444       344444444444333488999999999999


Q ss_pred             HHHHHHHHHHhH
Q 017347          244 HQRVLQILDQLE  255 (373)
Q Consensus       244 h~q~~~iL~~L~  255 (373)
                      +++.++++.++.
T Consensus       186 f~qG~el~~d~~  197 (200)
T cd07638         186 FHQGYDLFSELG  197 (200)
T ss_pred             HHhHHHHHHHhc
Confidence            999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=98.93  E-value=2e-10  Score=113.05  Aligned_cols=60  Identities=28%  Similarity=0.515  Sum_probs=56.0

Q ss_pred             CCCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          303 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       303 ~~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ......|.|+|.|.+++++||.|.+||+|.|+..+.+|||.|..+|+.|+||+|||..+.
T Consensus        97 q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~  156 (627)
T KOG4348|consen   97 QPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELP  156 (627)
T ss_pred             CccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecC
Confidence            345678999999999999999999999999999999999999999999999999998874

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2

Probab=98.92  E-value=2.7e-07  Score=84.68  Aligned_cols=140  Identities=8%  Similarity=0.184  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 017347          107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGN  186 (373)
Q Consensus       107 ~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~  186 (373)
                      .|.+|.+|+.+...|...+..|..++...++.||.+|... |+..+++.|++||+...++++-+--+.+-.+|.++. -.
T Consensus        65 i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~ke-dl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~-e~  142 (207)
T cd07635          65 IDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRKE-QLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEP-QL  142 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCcc-HH
Confidence            4799999999999999999999999999999999999998 999999999999999999887665553332222222 11


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347          187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (373)
Q Consensus       187 ~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~  255 (373)
                      .+++..|..+...|....=+       ..-.+..+..-...=.|.-|.+|+.|+..|+++.++++.++.
T Consensus       143 ~EA~~~l~~~r~~F~~~sLd-------Yv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~  204 (207)
T cd07635         143 QEADVQVEQNRQHFYELSLE-------YVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            23344555555555554433       333333343333222388999999999999999999998874

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote

>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase

Probab=98.87  E-value=2.3e-07  Score=85.20  Aligned_cols=184  Identities=11%  Similarity=0.209  Sum_probs=122.8

Q ss_pred             hhHHHHHhhhhcccccCC--CCCCchhhHHHHHHHHhhccCCCC---CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017347           61 KHFQRDIVRGVEGYIVTG--SKQVEIGTKLSEDSRKYGSDNTCT---SGN-TLSKAALSYGRARAQMEKERGNLLKALGT  134 (373)
Q Consensus        61 k~~~~~i~r~~e~~~~~~--~~~~e~~~~Lg~~m~~~g~e~~~~---~~s-~~g~al~~~g~a~~~l~~~~~~~~~~~~~  134 (373)
                      +.+.++|+|..=++++.+  |....-  .++.+...++-++-+.   .|. ....+|.+|+.+...|++.+..|...+..
T Consensus        15 ~k~ik~liK~~k~~i~A~k~~~~a~~--~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~   92 (207)
T cd07636          15 NKFIKELIKDGKSLIAALKNLSSAKR--KFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASE   92 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666655554321  122222  4666677777553311   111 25799999999999999999999999999


Q ss_pred             hhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017347          135 QVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEA  214 (373)
Q Consensus       135 ~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea  214 (373)
                      .++.||.+|+.. |+..+++-+|+||+...++++-+--+..-..|.++        .+++.|.+.+..++.......=+.
T Consensus        93 ~l~~~L~~F~ke-di~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~--------~~~eEA~~~L~~~r~~F~~~sLdY  163 (207)
T cd07636          93 VLITPLEKFRKE-QIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKE--------SQLHEADSQVDLVRQHFYEVSLEY  163 (207)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCc--------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998 99999988899999988888655444221112122        256666666666555532222223


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347          215 AAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (373)
Q Consensus       215 ~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~  255 (373)
                      .-.+..+.+-...=.|..|.+|+.|+..|+++.++++.++.
T Consensus       164 V~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~  204 (207)
T cd07636         164 VFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            33334444333333388999999999999999999998874

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o

>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II

Probab=98.83  E-value=5.6e-07  Score=82.83  Aligned_cols=179  Identities=12%  Similarity=0.163  Sum_probs=125.7

Q ss_pred             hhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHH-hhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017347           59 AGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA  137 (373)
Q Consensus        59 ~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~-~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl  137 (373)
                      .++..+|+..+..+.+...-.-|+.+    +++|.. |+.+.++ . +.    +..+|   .....++.+|...+..++|
T Consensus        27 ~~~kL~Ke~K~Y~dav~~m~~sq~~~----se~l~e~Y~p~~~g-~-~~----~~~~~---~~~d~~~~dl~~~lv~~vl   93 (211)
T cd07611          27 EGTRLQRELRAYLAAIKGMQEASKKL----TESLHEVYEPDWYG-R-DD----VKTIG---EKCDLLWEDFHQKLVDGAL   93 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCcccc-c-ch----HHHHH---hhHHHHHHHHHHHHHHHHH
Confidence            34557777777777665333344554    444443 3444210 1 11    11222   4444688888888888899


Q ss_pred             HHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017347          138 EPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA  216 (373)
Q Consensus       138 ~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~  216 (373)
                      +|+.+|+.  .+.+|+ ..+||.++ ...+++.|.-+++-+.|...+      +.+|..||..++.+++.+..|+..+..
T Consensus        94 ~P~~~~~s--~f~~I~~~I~KR~hK-llDYD~~r~~~~kL~~k~~kD------e~KL~kAe~el~~Ak~~ye~lN~~Lk~  164 (211)
T cd07611          94 LTLDTYLG--QFPDIKNRIAKRSRK-LVDYDSARHHLEALQTSKRKD------EGRIAKAEEEFQKAQKVFEEFNVDLQE  164 (211)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhcccccc------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999996  899999 55554333 555566666664443332222      569999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017347          217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML  259 (373)
Q Consensus       217 ~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~  259 (373)
                      .|.....-.-.++..++.+|+.+|+.||..+..+-.+|..-|.
T Consensus       165 ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~  207 (211)
T cd07611         165 ELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMT  207 (211)
T ss_pred             HHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988766666777889999999999999999998888887664

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit

>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules

Probab=98.77  E-value=4.7e-06  Score=78.10  Aligned_cols=225  Identities=17%  Similarity=0.229  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCc-cccchHHhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhh
Q 017347            9 TKLREQVARQQQAVFKQFGGGGYGGSDN-VVTDEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGT   86 (373)
Q Consensus         9 ~~~~~~~a~~~q~~~~~~~~~~~~~~~~-~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~   86 (373)
                      +|++.+.--++|.|.+++|..+    |+ .|+--.|+. +=+.|+......+..-...+.+.+..-.     -.+.+.  
T Consensus         3 ~k~~~~~~~tkq~~~e~~g~~~----~~~~it~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~-----l~q~q~--   71 (229)
T PF06456_consen    3 KKMKSTYKCTKQMVSEKLGKKE----DSRAITVDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQA-----LSQTQK--   71 (229)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--
T ss_pred             chhhhhHHHHHHHHHHHcCccc----ccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--
Confidence            5677777788999999999433    22 222222444 3333333333333211112222222111     123455  


Q ss_pred             HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l  166 (373)
                      .||+.+...|.-.+   .-.+|.++..+|++++.+++-+..+...+ ..|+.-|..|+.. =+.|...--++|+..|-+.
T Consensus        72 ~lg~~f~~~~~~e~---~~~l~~~f~~~~~~~~~~~~~~~~L~~~l-~~~~~~l~Tf~~k-aI~DT~~Tik~ye~aR~EY  146 (229)
T PF06456_consen   72 ELGDFFAELGVREK---SPALGEEFSANGEAQRSLAKQGETLLKAL-KRFLSDLNTFRNK-AIPDTLLTIKKYEDARFEY  146 (229)
T ss_dssp             HHHHHHHHHHH--H----CCGHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            69999999999422   22689999999999999999999998875 4789999999997 8888885556699999999


Q ss_pred             HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (373)
Q Consensus       167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q  246 (373)
                      .+-|++++.-....  .+..+-.....+.++..|.++++.++.|...+..-|--.++.+=++...+|..|+.|...||..
T Consensus       147 ~ay~~~lke~~~e~--~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~  224 (229)
T PF06456_consen  147 DAYRLWLKEMSDEL--DPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSG  224 (229)
T ss_dssp             HHHHHHHHHHH--T--STSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccc--CchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999886654331  1112233678999999999999999999999998886666555455566999999999999999


Q ss_pred             HHHHH
Q 017347          247 VLQIL  251 (373)
Q Consensus       247 ~~~iL  251 (373)
                      +.+.|
T Consensus       225 ~~~~l  229 (229)
T PF06456_consen  225 NAQAL  229 (229)
T ss_dssp             HHHHH
T ss_pred             hHhhC
Confidence            98765

The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.

>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]

Probab=98.76  E-value=1e-08  Score=100.96  Aligned_cols=56  Identities=32%  Similarity=0.514  Sum_probs=53.1

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      .+++++|||.+..++||+|.+|-+|.|+.+.|+|||+|-+.|..|+||-|||+.+.
T Consensus       424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            46899999999999999999999999999999999999999999999999998763

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=98.76  E-value=7.3e-09  Score=102.37  Aligned_cols=55  Identities=31%  Similarity=0.542  Sum_probs=51.7

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEE--EeCCeeeEecCCCeee
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG--ECKGKAGWFPFGYIER  360 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G--~~~g~~G~fP~~Yve~  360 (373)
                      ...++|||.|.+++++||.|..||+|.|++++|+||+.|  ++.|.-|.||-|||+.
T Consensus       432 ~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  432 PLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             cccceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence            345899999999999999999999999999999999999  7899999999999975

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=98.71  E-value=1.2e-05  Score=74.41  Aligned_cols=185  Identities=19%  Similarity=0.252  Sum_probs=126.2

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN  127 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~  127 (373)
                      .||-+|+..+.+   |+++--+-..           .+.-||..+..||+.    .+..++++|..++++...|+..+..
T Consensus        18 ~hl~~l~~~~~~---lv~k~~~L~~-----------~~~~fak~~~~la~~----E~~~L~~~L~~lae~~~~i~d~~q~   79 (211)
T cd07598          18 KHFGELCQDFAA---YTRKTARLRD-----------KGDELAKSINAYADT----ENPSLKQGLKNFAECLAALQDYRQA   79 (211)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHH-----------hHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888776   4444322222           133578888888874    2448999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 017347          128 LLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN  206 (373)
Q Consensus       128 ~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~  206 (373)
                      ....+...|++||..|..  -++-++ .+|. ....|..+-.++.-+-+-+.+      ++....++..||.+++..+..
T Consensus        80 qv~~l~~~v~epLk~Y~~--l~k~~k~~~K~-~~~ar~~~~~~~~~leklk~~------~~~d~~~i~eaE~~l~~a~~d  150 (211)
T cd07598          80 EVERLEAKVVQPLALYGT--ICKHARDDLKN-TFTARNKELKQLKQLEKLRQK------NPSDRQIISQAESELQKASVD  150 (211)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHHHHH
Confidence            999999999999999986  566666 5443 333344443344333111111      111123555566666666666


Q ss_pred             HHHhhHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          207 MAILGKEAAAAMAAVESQQQRLTLQ-RLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       207 ~~~L~kea~~~m~~~~~~~~~~~l~-~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      +...++.....|...+.+.-. .+. .|.+||.+++.||.++.++|..+...+.+
T Consensus       151 ~~r~s~~l~ee~~rFe~~k~~-d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~  204 (211)
T cd07598         151 ANRSTKELEEQMDNFEKQKIR-DIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQN  204 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666666688888766555411 122 77899999999999999999999887765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1

Probab=98.69  E-value=2e-06  Score=78.56  Aligned_cols=160  Identities=17%  Similarity=0.232  Sum_probs=104.1

Q ss_pred             hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHH
Q 017347           84 IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRM  162 (373)
Q Consensus        84 ~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~  162 (373)
                      +.+.||..|+.     .  ++...|.||.+|+...+.|......+..++...+..||.+|+.+ |++..+ ++|+.+++.
T Consensus        45 ~l~~Lg~~~~~-----~--dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~v~~~L~~flK~-Dlr~~K~d~KK~FdK~  116 (215)
T cd07641          45 ALDKFGSNFLS-----R--DNPDLGTAFVKFSTLTKELSTLLKNLLQGLSHNVIFTLDSLLKG-DLKGVKGDLKKPFDKA  116 (215)
T ss_pred             HHHHHHHhhcc-----C--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHhHHHHH
Confidence            34455655543     3  55578999999999999999999999999999999999999999 999999 999999999


Q ss_pred             HHHHHHHHHHH-HHHh--hhhccCC----CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 017347          163 RQEAEAQAIEV-SKRQ--AKVRETP----GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIA  235 (373)
Q Consensus       163 r~~le~rrld~-k~r~--~K~~e~~----~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~  235 (373)
                      .+++|+...-. +.++  .|-.+-.    ...++..+|.....=|.-..=+|-.-=       ..+...+-.=.|+.|..
T Consensus       117 ~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqi-------n~iq~Kk~~eiLq~ll~  189 (215)
T cd07641         117 WKDYETKFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEKERRLFQLQMCEYLIKV-------NEIKTKKGVDLLQNLIK  189 (215)
T ss_pred             HHHHHHHHHHHHhhhhhhcCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHH
Confidence            99998755443 1111  2211100    000112222222222222111100000       00111111112779999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHH
Q 017347          236 MVEAERTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       236 ~veAql~Yh~q~~~iL~~L~~eL  258 (373)
                      |+.||.+|+++....+++|..-+
T Consensus       190 ~~hAq~tfFqqG~~~~~~l~py~  212 (215)
T cd07641         190 YYHAQCNFFQDGLKTADKLKQYI  212 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999887543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=98.69  E-value=1.1e-08  Score=95.62  Aligned_cols=62  Identities=15%  Similarity=0.323  Sum_probs=55.3

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEe-CCeeeEecCCCeeeccCCCch
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGEC-KGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~-~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ...+.+||+|++.++.||+|.+||.+.|+++.  |++||+++. .|+.|+||.|||+++.+-|.+
T Consensus       191 l~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~t  255 (379)
T KOG4226|consen  191 LHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPST  255 (379)
T ss_pred             EEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccc
Confidence            34678999999999999999999999999875  788999999 999999999999998766543

>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins

Probab=98.68  E-value=4.8e-06  Score=77.89  Aligned_cols=186  Identities=16%  Similarity=0.190  Sum_probs=122.0

Q ss_pred             hhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHH-hhccCCCCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 017347           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQME-KERGNLLKALGTQ  135 (373)
Q Consensus        58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~-~g~e~~~~~~s~~g~al~~~g~a~~~l~-~~~~~~~~~~~~~  135 (373)
                      .+++..+|++.+-.+.+.....-|+    .+++++.. |+...+  ++ .. ...-.|+.+.+.|. ....++...+...
T Consensus        25 ~~~~kL~k~~k~y~da~~~l~~~q~----~i~~~l~~lY~p~~~--~~-~~-~~~~~y~~~v~~l~~~~~~el~~~~~~~   96 (224)
T cd07591          25 KASTKLQKEAKGYLDSLRALTSSQA----RIAETISSFYGDAGD--KD-GA-MLSQEYKQAVEELDAETVKELDGPYRQT   96 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCCCC--cc-Hh-HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3445567777666666543322233    34566554 555543  21 11 12234555555554 3455666668899


Q ss_pred             hhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017347          136 VAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEA  214 (373)
Q Consensus       136 fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea  214 (373)
                      ++.|+..++.  .+++++ .++|| ++.+...++.|-.+.+-..|...+      ..+|..||.+++++++.+..|+..+
T Consensus        97 V~~Pl~~~~~--~~~~i~k~IkKR-~~KllDYD~~~~k~~kl~~K~~kd------~~kL~kae~el~~a~~~Ye~lN~~L  167 (224)
T cd07591          97 VLDPIGRFNS--YFPEINEAIKKR-NHKLLDYDAARAKVRKLIDKPSED------PTKLPRAEKELDEAKEVYETLNDQL  167 (224)
T ss_pred             HHHHHHHHHH--HhhhHHHHHHHH-HhhHhhHHHHHHHHHHHHhcccCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999996  899988 44552 222333333333332222221111      3689999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          215 AAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       215 ~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      ...|.....-.-.+....+.+|+..|+.||......|.++..-+..
T Consensus       168 k~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~  213 (224)
T cd07591         168 KTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDA  213 (224)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            9999887666656667799999999999999999999998887754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an

>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]

Probab=98.67  E-value=1.8e-08  Score=100.69  Aligned_cols=56  Identities=27%  Similarity=0.509  Sum_probs=52.7

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l  361 (373)
                      ...++|+|||++.++.|++|-.+|+|++++..+.|||.|.. .|..|+||+|||+.+
T Consensus       427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            45789999999999999999999999999999999999998 899999999999865

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.59  E-value=2.4e-08  Score=104.70  Aligned_cols=60  Identities=23%  Similarity=0.470  Sum_probs=54.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCC-eeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-KAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g-~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|||||.|..++||||-+|-+|+++++.++|||.|..+| ..||||+|||+.+.+.
T Consensus       773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             cchhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence            34679999999999999999999999999999999999999976 6799999999988663

>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1

Probab=98.58  E-value=9.5e-06  Score=74.46  Aligned_cols=163  Identities=12%  Similarity=0.141  Sum_probs=114.7

Q ss_pred             HHHHHHHHhh---ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYG---SDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (373)
Q Consensus        87 ~Lg~~m~~~g---~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r  163 (373)
                      .++..+..|-   =++| ++|...+.+|-+|+.+...|...+..+...+....+.||.+|+.. |+.++++.|++||+..
T Consensus        41 ~~~~~l~~~~~~~f~~~-~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~ke-dL~~~Ke~KK~FdK~S  118 (215)
T cd07631          41 LTSKLLKEYEKQRFPLG-GDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKER-DLKEILTLKEVFQIAS  118 (215)
T ss_pred             HHHHHHHHHHHhcCCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence            4677777776   3443 355567999999999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017347          164 QEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY  243 (373)
Q Consensus       164 ~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Y  243 (373)
                      .++++-+.-+..-..+++++.-..+.+.++..+..+|....=+       ..-.+..+..-...-.|..|.+|+.|+..|
T Consensus       119 e~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~~~aLd-------Yv~qLn~lQ~rKKfefLe~lLs~m~A~~tF  191 (215)
T cd07631         119 NDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQHQTMMH-------YFCALNTLQYKKKIALLEPLLGYMQAQISF  191 (215)
T ss_pred             hHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998776666222111111100012345566666777765444       222222333322222388999999999999


Q ss_pred             HHHHHH-HHHHhHHHH
Q 017347          244 HQRVLQ-ILDQLEGEM  258 (373)
Q Consensus       244 h~q~~~-iL~~L~~eL  258 (373)
                      +++.++ +..++..=+
T Consensus       192 FhqG~e~L~~dl~~f~  207 (215)
T cd07631         192 FKMGSENLNEQLEEFL  207 (215)
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            999999 444555433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family

Probab=98.56  E-value=4.1e-05  Score=71.31  Aligned_cols=194  Identities=17%  Similarity=0.278  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhc---cCCCCCCChHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS---DNTCTSGNTLSKAALSYGRARAQMEK  123 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~---e~~~~~~s~~g~al~~~g~a~~~l~~  123 (373)
                      +..+|+|....+.   |++.+--.+.+           +..+.+++.+-|.   ...  ..-.+|.+|..++..++.|+.
T Consensus         9 ~P~~e~lv~~~~k---Y~~al~~~~~a-----------~~~f~dal~ki~~~A~~s~--~s~~lG~~L~~~s~~~r~i~~   72 (219)
T PF08397_consen    9 NPAWENLVSLGKK---YQKALRAMSQA-----------AAAFFDALQKIGDMASNSR--GSKELGDALMQISEVHRRIEN   72 (219)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHhccCCC--ccccHHHHHHHHHHHHHHHHH
Confidence            3889999987655   87776433332           1123444444332   111  122689999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q 017347          124 ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD----RMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVK  199 (373)
Q Consensus       124 ~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~----~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K  199 (373)
                      .++.+...+...||.||+..++. +.+.+..+.++|+    +.+.+++..--+.++-..|.+. + .......++.+...
T Consensus        73 ~~~~~~~~~~~~li~pLe~~~e~-d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k-g-k~~~~~~~~~~~~~  149 (219)
T PF08397_consen   73 ELEEVFKAFHSELIQPLEKKLEE-DKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK-G-KDDQKYELKEALQD  149 (219)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-C-TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-C-CccccHHHHHHHHH
Confidence            99999999999999999999997 8888776655554    3444444444444332223221 1 12223445555444


Q ss_pred             HHHHHHHHHHhhHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          200 LHDLKSNMAILGKE-AAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       200 ~~e~~e~~~~L~ke-a~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      +.+....|...-+. ...+|.. |--.=.+.+.++..|+...+.||.+...+|+..-..|..
T Consensus       150 v~~~~~ele~~~~~~~r~al~E-ERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~  210 (219)
T PF08397_consen  150 VTERQSELEEFEKQSLREALLE-ERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQE  210 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            44433333322222 2222221 222223448899999999999999999999988888876

In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.

>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1

Probab=98.53  E-value=1.1e-05  Score=73.55  Aligned_cols=156  Identities=11%  Similarity=0.192  Sum_probs=105.7

Q ss_pred             HHHHHHHHhhccCCCCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNT------LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD  160 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~------~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~  160 (373)
                      .++..+...+-++-  ++..      .+.||.+||.....|.+.+..|..++...++.||++|+.. |++.+++.||+|+
T Consensus        41 ~Fa~~L~df~f~~i--gd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~L~~F~Ke-di~~~Ke~KK~Fd  117 (207)
T cd07633          41 KFSQTLQSFQFDFI--GDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLIKPLENFRKE-QIGFTKERKKKFE  117 (207)
T ss_pred             HHHHHHHHHHhhcC--CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh
Confidence            45666666666654  5544      7999999999999999999999999999999999999987 9998888888899


Q ss_pred             HHHHHHHHHHHHHHHHhh--hhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347          161 RMRQEAEAQAIEVSKRQA--KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE  238 (373)
Q Consensus       161 ~~r~~le~rrld~k~r~~--K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve  238 (373)
                      +...++++- |+ |.-+.  |.++        .+++.|..-+.-.+..+....=+-.--+..+......=.|.-|.+|+.
T Consensus       118 K~se~~~~a-L~-k~a~~s~k~K~--------~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~  187 (207)
T cd07633         118 KDSEKFYSL-LD-RHVNLSSKKKE--------SQLQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLH  187 (207)
T ss_pred             hhhhHHHHH-HH-HHhcccccCCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988777641 11 11111  2111        266666655555554421111111111111211111112778999999


Q ss_pred             HHHHHHHHHHHHHHHhH
Q 017347          239 AERTYHQRVLQILDQLE  255 (373)
Q Consensus       239 Aql~Yh~q~~~iL~~L~  255 (373)
                      |+..|+++.++++.++.
T Consensus       188 a~~tf~hqG~el~~df~  204 (207)
T cd07633         188 SLFTSNNLTVELTQDFL  204 (207)
T ss_pred             HHHHHHhhHHHHHHHhc
Confidence            99999999999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=98.53  E-value=2.3e-08  Score=91.33  Aligned_cols=62  Identities=19%  Similarity=0.400  Sum_probs=56.2

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCCCch
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ...++++|||.+.+..+|.|++||++.|+++....||..+. .|+.|++|.+||+...+..++
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~  186 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASAS  186 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcc
Confidence            35678899999999999999999999999999999999999 999999999999988765533

>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3

Probab=98.51  E-value=1.1e-05  Score=72.92  Aligned_cols=170  Identities=21%  Similarity=0.270  Sum_probs=115.3

Q ss_pred             CCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HH
Q 017347           77 TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HL  155 (373)
Q Consensus        77 ~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~  155 (373)
                      .|.-++|+-+.+.+.+-+.|+-.=+.++...|.++++|+--.+.++..-.++..++..-+.=||..|+.+ |+++.+ ++
T Consensus        31 sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~-dlr~~K~D~  109 (213)
T cd07640          31 SGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKG-QLRDGRLES  109 (213)
T ss_pred             hhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHH-HhhhhhHHH
Confidence            3556666666677777777765444455689999999999999999999999999999999999999999 999999 99


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-----hHHHH--HH
Q 017347          156 AQRYDRMRQEAEAQAIEV-SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQ--QR  227 (373)
Q Consensus       156 k~~y~~~r~~le~rrld~-k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~-----~~~~~--~~  227 (373)
                      |+.+++..+++|+...-. +-++.|.++. +-.  +.+...+.+.++..+..       ..-.|.+     ++.+.  -.
T Consensus       110 KK~FeK~skDyE~kl~K~ak~~r~k~~~~-g~~--~~e~eEaae~l~~eRr~-------Fql~acdYllkin~iq~KK~~  179 (213)
T cd07640         110 KKQMEKAWKDYEAKIGKLEKERREKQKQH-GLI--RLDMTDTAEDMQRERRN-------FQLHMCEYLLKAQESQMKQGP  179 (213)
T ss_pred             HhHHHHHHHHHHHHHHHHhccccccchhc-ccc--cccHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHhhch
Confidence            999999999998755444 1111111111 000  01222222233333332       2222211     11111  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017347          228 LTLQRLIAMVEAERTYHQRVLQILDQLEGE  257 (373)
Q Consensus       228 ~~l~~L~~~veAql~Yh~q~~~iL~~L~~e  257 (373)
                      =.|+.|..|..||.+|+++....+++|..-
T Consensus       180 diLq~Llsy~hAQ~~fFqqG~~~l~~l~py  209 (213)
T cd07640         180 DFLQSLIKFFHAQHNFFQDGWKAAQNLGPF  209 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            128899999999999999999999988653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran

>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2

Probab=98.46  E-value=9.2e-06  Score=74.12  Aligned_cols=163  Identities=12%  Similarity=0.178  Sum_probs=108.8

Q ss_pred             HHHHHHHHhhcc-CC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSD-NT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (373)
Q Consensus        87 ~Lg~~m~~~g~e-~~-~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~  164 (373)
                      .|+.-+..|... |+ |.+|...+.||.+|+.+...|...+..|...+...++.||..|+.. |++.+++.|+.|++...
T Consensus        41 ~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~Ke-Dl~~vKe~KK~FdK~Se  119 (215)
T cd07632          41 QLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREK-DLTEVSTLKDLFGIASN  119 (215)
T ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhH
Confidence            466667777663 33 3466678999999999999999999999999999999999999998 99999999999999888


Q ss_pred             HHHHHHHHHHHHhhhhccCC-CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017347          165 EAEAQAIEVSKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY  243 (373)
Q Consensus       165 ~le~rrld~k~r~~K~~e~~-~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Y  243 (373)
                      ++++-=.-+.+- .|.++.. ..+++..+|..+..+|-...=+|       .-.+..+..-...=.|.-|.+|+.|+.+|
T Consensus       120 ~~d~AL~Knaql-skkK~~E~~eae~~~~l~~sRr~F~~~ALdY-------V~qiN~lQ~RKKfeiLE~mLsym~Aq~TF  191 (215)
T cd07632         120 EHDLSMAKYSRL-PKKRENEKVKAEVAKEVAYSRRKQHLSSLQY-------YCALNALQYRKRVAMLEPMLGYTHGQINF  191 (215)
T ss_pred             HHHHHHHHHhhC-CcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877533323111 1111110 00112223555555555533331       11222221111111277899999999999


Q ss_pred             HHHHHHHHHHhHHHH
Q 017347          244 HQRVLQILDQLEGEM  258 (373)
Q Consensus       244 h~q~~~iL~~L~~eL  258 (373)
                      +++.++++.+-.+..
T Consensus       192 FhQGyeL~~~~~~~~  206 (215)
T cd07632         192 FKKGAELFSKKLDSF  206 (215)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999877654443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac

>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]

Probab=98.39  E-value=2.6e-07  Score=83.27  Aligned_cols=55  Identities=29%  Similarity=0.506  Sum_probs=51.5

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      ...+++|||.+++.+|.+|.-||.|.-....++||..|.+  .|..|+.|.||++.+
T Consensus       208 ktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             ccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            6789999999999999999999999999999999999987  999999999999864

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=3.2e-07  Score=92.76  Aligned_cols=57  Identities=23%  Similarity=0.422  Sum_probs=50.9

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeec---CCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVT---NNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~---~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      .+-|+|||+++.++||+|.+||-++|+...   +.+||-++++|+.|+||.||+-....+
T Consensus       685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPri  744 (752)
T KOG0515|consen  685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRI  744 (752)
T ss_pred             eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccc
Confidence            478999999999999999999999999984   457999999999999999999776544

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=98.34  E-value=4.8e-07  Score=82.17  Aligned_cols=58  Identities=22%  Similarity=0.406  Sum_probs=53.4

Q ss_pred             CCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      .....+.++|||++..+++|.|..||+|.|+...+..||.|.+.|+.|+||++||...
T Consensus       161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~  218 (222)
T KOG3601|consen  161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS  218 (222)
T ss_pred             ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence            3446789999999999999999999999999999999999999999999999998654

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=98.33  E-value=0.0002  Score=65.44  Aligned_cols=199  Identities=12%  Similarity=0.136  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERG  126 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~  126 (373)
                      ...+++|......+.+....+++...++-.      . ...||.++...+..... ....++.++..+|.+...+.....
T Consensus        10 ~~~v~~le~~l~~l~~~~~~~~k~~~~l~~------~-~~elg~~~~~Ls~~e~~-~~~~l~~~~~~~~~~~~~~~~~~~   81 (218)
T cd07596          10 KDYILKLEEQLKKLSKQAQRLVKRRRELGS------A-LGEFGKALIKLAKCEEE-VGGELGEALSKLGKAAEELSSLSE   81 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHhhccc-cchhhHHHHHHHHHHHHHHHHHHH
Confidence            344445554444444444456555544321      1 22578888888775431 112699999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH-HH--HhhhhccCC-----CCcchHHHHHHHHH
Q 017347          127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV-SK--RQAKVRETP-----GNPDLALKLDAAEV  198 (373)
Q Consensus       127 ~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~-k~--r~~K~~e~~-----~~~~~~~eL~~ae~  198 (373)
                      .........|++||..++.  -+..++..-.+.+.+...++.-.-++ ++  +..|.+..+     +...++.++..++.
T Consensus        82 ~~~~~~~~~~~e~L~~y~~--~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~  159 (218)
T cd07596          82 AQANQELVKLLEPLKEYLR--YCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAES  159 (218)
T ss_pred             HHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Confidence            9999999999999999985  45555533332233333333322223 11  111221111     11233445666666


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347          199 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE  255 (373)
Q Consensus       199 K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~  255 (373)
                      ..+.++..+..+...+...+...+.....-.-..|..|++.+..|++.+.++|..+.
T Consensus       160 ~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~  216 (218)
T cd07596         160 ALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLL  216 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            666666666665555665554443322211244888999999999999999887764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=1.4e-07  Score=89.91  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=49.0

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec-----CCCeEEEEe--CCeeeEecCCCeeeccC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-----NNGWAEGEC--KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-----~~gW~~G~~--~g~~G~fP~~Yve~l~~  363 (373)
                      ..|+|+|||.+.++.||+|++||.+.|..+.     +..||....  +|..||||.|||+.+..
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            4699999999999999999999999998873     445777655  78999999999999865

>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]

Probab=98.23  E-value=8.2e-05  Score=70.70  Aligned_cols=55  Identities=24%  Similarity=0.257  Sum_probs=52.0

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|.++|+|++..++||....||++.+-++..+|||.|+..|..|.||+.||+..
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            5799999999999999999999999999999999999999999999999999864

>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes

Probab=98.22  E-value=0.0012  Score=61.78  Aligned_cols=197  Identities=16%  Similarity=0.196  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCC-CCCChHHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC-TSGNTLSKAALSYGRARAQMEKER  125 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~-~~~s~~g~al~~~g~a~~~l~~~~  125 (373)
                      ++.+++|....+.   |++.+.-.+-.           +..+.+++.+-|.--.+ .+.-.+|.+|..+...++.++.-.
T Consensus        19 ~P~~~~li~~~~~---Y~kal~a~~~a-----------~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l   84 (223)
T cd07605          19 NPVLRNLIKAGKK---YQKALQALSQA-----------AKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASL   84 (223)
T ss_pred             ChhHHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            5667777766544   66655222211           22345555555443211 133469999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q 017347          126 GNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD----RMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLH  201 (373)
Q Consensus       126 ~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~----~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~  201 (373)
                      +.+...+...+|.||..-++- +.|.+....++|.    +.|.+|+...-|.++-+.|++.. +.+.....+..+.+.+.
T Consensus        85 ~~~~~~~~~~li~pLe~k~e~-d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~-~~~k~~~~l~~~~e~v~  162 (223)
T cd07605          85 EQVAKAFHGELILPLEKKLEL-DQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKS-GTGKYQEKLDQALEELN  162 (223)
T ss_pred             HHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCcccHHHHHHHHHHH
Confidence            999999999999999999985 8888876666563    44556666666663333332211 11222345666644444


Q ss_pred             HHHHHHHHhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          202 DLKSNMAILGK-EAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       202 e~~e~~~~L~k-ea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      .-...|...-+ .+..+|.. +-..=-+.|.++..|++.+.+||......|++--..|..
T Consensus       163 ~k~~ele~~~~~~lr~al~E-ERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~~  221 (223)
T cd07605         163 DKQKELEAFVSQGLRDALLE-ERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQE  221 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence            43333332222 23333332 222223448899999999999999999988877666653

Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me

>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes

Probab=98.21  E-value=0.00056  Score=62.79  Aligned_cols=165  Identities=14%  Similarity=0.216  Sum_probs=127.6

Q ss_pred             CCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH
Q 017347           81 QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD  160 (373)
Q Consensus        81 ~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~  160 (373)
                      |.+.  .||+.+...|..-+  +- . |.+...+|++++-+++-+..+...+. .|+.-|..|+.. -+.|...=.++|+
T Consensus        37 q~q~--~lG~~f~~l~~~~~--~~-a-~~~f~~~~~a~r~~~k~g~~ll~~l~-~~~~~l~T~~~k-ai~DT~lTI~~ye  108 (203)
T cd00011          37 QTQH--ALGDAFADLSQKDP--EL-A-GEEFGYNAEAQKLLCKNGETLLGAVN-FFVSSINTLVTK-AIEDTLLTVKQYE  108 (203)
T ss_pred             HHHH--HHHHHHHHHHhcCC--cH-H-HHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhh-hcchHHHHHHHHH
Confidence            4555  69999999999876  21 2 89999999999999999999988775 688999999987 8888875556699


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017347          161 RMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE  240 (373)
Q Consensus       161 ~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAq  240 (373)
                      ..|-+..+-|++++.-......+  ..---.+.+.++..+.+.++-+++|.+.+..-|--.+..+=++...+|..|..|.
T Consensus       109 ~aR~EY~a~~l~~ke~~~e~~~~--~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al  186 (203)
T cd00011         109 AARLEYDAYRLDLKELSLEPRDD--TAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTV  186 (203)
T ss_pred             HHHHhHHHHHHHHHHhcccCCcc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999986653332111  0001237888888888888888888888888775545444444466999999999


Q ss_pred             HHHHHHHHHHHHHhH
Q 017347          241 RTYHQRVLQILDQLE  255 (373)
Q Consensus       241 l~Yh~q~~~iL~~L~  255 (373)
                      ..||..+...|++..
T Consensus       187 ~~y~~~~~~~l~~~~  201 (203)
T cd00011         187 SAYFAGNQKVLEQTL  201 (203)
T ss_pred             HHHHHHhHHHHHHHh
Confidence            999999999998764

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=98.20  E-value=0.00093  Score=62.26  Aligned_cols=163  Identities=14%  Similarity=0.225  Sum_probs=101.1

Q ss_pred             HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQE  165 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~  165 (373)
                      -||.++...|.--   ++..++.+|..+|++...++.....+...-...|.+||+.|+.  -+.-++ .+..| +++...
T Consensus        63 e~~~~~~~la~~E---~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~--~~~svk~~l~~R-~~~~~~  136 (236)
T PF09325_consen   63 EFGSSFSQLAKSE---EEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLR--YIESVKEALNRR-DKKLIE  136 (236)
T ss_pred             HHHHHHHHhhccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHH
Confidence            3566666555432   3457999999999999999999999999999999999998885  444444 33322 222233


Q ss_pred             HHHHHHHHHHHh---hhhccCC-----CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 017347          166 AEAQAIEVSKRQ---AKVRETP-----GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMV  237 (373)
Q Consensus       166 le~rrld~k~r~---~K~~e~~-----~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~v  237 (373)
                      ++.---++.+++   .|....+     +...+..++..++.+.+.++..+....+.+...+...+.+...-.-..|..|+
T Consensus       137 ~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~  216 (236)
T PF09325_consen  137 YQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYA  216 (236)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333331111   1111110     11223455666666666666666665555665554433333211244899999


Q ss_pred             HHHHHHHHHHHHHHHHhH
Q 017347          238 EAERTYHQRVLQILDQLE  255 (373)
Q Consensus       238 eAql~Yh~q~~~iL~~L~  255 (373)
                      +.+..|++++.++|..+.
T Consensus       217 ~~~i~~~~~~~~~We~~~  234 (236)
T PF09325_consen  217 ESQIEYQKKMLEAWETFL  234 (236)
T ss_pred             HHHHHHHHHHHHHHHhHc
Confidence            999999999999998764

This is the C-terminal dimerisation domain [].

>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein

Probab=98.19  E-value=0.00012  Score=67.12  Aligned_cols=138  Identities=12%  Similarity=0.147  Sum_probs=92.2

Q ss_pred             HHHHHHhhccCCCCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHH
Q 017347           89 SEDSRKYGSDNTCTSGNTLSKAALSYGRARAQM-EKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEA  166 (373)
Q Consensus        89 g~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l-~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~l  166 (373)
                      ...|.-|+.+.+  .+   -.+...|..+...+ ..+..++...+...++.||..++.  -++.++ .++|        =
T Consensus        47 ~~~~d~y~~~~~--~~---~~~~~~~~~~~~~~~~~~~~e~~~~i~~~V~~Pl~~~~~--~~~~~~k~I~K--------R  111 (195)
T cd07589          47 EVVLDLYPSNHP--RL---ESKWERFRRVVRGISSKALPEFKSRVRKLVIEPLSSLLK--LFSGPQKLIQK--------R  111 (195)
T ss_pred             HHHHHhccCCCh--hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHH--------H
Confidence            444444665543  21   12334444444333 458889999999999999999996  677777 5455        4


Q ss_pred             HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (373)
Q Consensus       167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q  246 (373)
                      +.+.+||-+-+.+..          ++..++.+++++++.+..|+..+...+.-...-...+.-.+|.+|+..|.+||..
T Consensus       112 ~~KllDYdr~~~~~~----------k~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~  181 (195)
T cd07589         112 YDKLLDYERYKEKKE----------RGGKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDT  181 (195)
T ss_pred             hhhhccHHHHHHHHH----------hhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678833333321          2445677777777777777777888887654444445566999999999999998


Q ss_pred             HHHHH
Q 017347          247 VLQIL  251 (373)
Q Consensus       247 ~~~iL  251 (373)
                      ..+.+
T Consensus       182 ~~~~~  186 (195)
T cd07589         182 LLKRA  186 (195)
T ss_pred             HHHHh
Confidence            88765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.

>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]

Probab=98.19  E-value=1.9e-07  Score=95.67  Aligned_cols=59  Identities=41%  Similarity=0.694  Sum_probs=54.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~  363 (373)
                      +.+.+.++..|.+..++||+|..+|++.|+.+.++||++|++  .|..||||..||+.+..
T Consensus       607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~  667 (695)
T KOG3523|consen  607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN  667 (695)
T ss_pred             CCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence            457788999999999999999999999999999999999998  89999999999998754

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=98.15  E-value=7.2e-06  Score=75.26  Aligned_cols=63  Identities=35%  Similarity=0.397  Sum_probs=54.4

Q ss_pred             CCCCceEEEEeccC--CCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          302 DAMGYFLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       302 ~~~~~~~~~alydf--~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      .+..+.+|+|+++-  .+-+...|.+.+||+|.|+....+|-|+|+++|+.|.||.+||+.+++-
T Consensus       223 ~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~  287 (293)
T KOG4792|consen  223 QQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQ  287 (293)
T ss_pred             ccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeeccC
Confidence            34456678998874  4567889999999999999999999999999999999999999987653

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=1e-06  Score=86.78  Aligned_cols=54  Identities=24%  Similarity=0.510  Sum_probs=49.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeee
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      ..+.++|+|.++..++|+|++||+|+++.+.  ..+||.|..+|..|+||.|||..
T Consensus       417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            3799999999999999999999999999986  45799999999999999999964

>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

Probab=98.11  E-value=0.001  Score=60.87  Aligned_cols=162  Identities=15%  Similarity=0.213  Sum_probs=120.6

Q ss_pred             CchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347           82 VEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR  161 (373)
Q Consensus        82 ~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~  161 (373)
                      .+.  -||+++..-|..-+     .+..+...+|++++.|+.--..+...++ .|+.-|..+++. -+.|...=.++|+.
T Consensus        38 tq~--~Lg~~f~~l~~k~p-----~l~~af~~~aet~k~l~kng~~Ll~al~-~f~s~l~T~~~k-ai~DT~lTI~~ye~  108 (201)
T cd07660          38 TQK--ALGDAFADLSQKSP-----ELQEEFTYNAETQKLLCKNGETLLGALN-FFVSSLNTLVNK-TMEDTLMTVKQYES  108 (201)
T ss_pred             HHH--HHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHh-hccHHHHHHHHHHh
Confidence            455  59999999999766     4578888999999999888777766654 688889999886 67777744456888


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017347          162 MRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAER  241 (373)
Q Consensus       162 ~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql  241 (373)
                      .|-+.++-|+|+..-....+    ..+.-.+++.++.+|.++++-+++|.+.+...|--.+.++=++-..+|.-|+.|..
T Consensus       109 aR~EYdayr~D~ee~~~~~~----~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~  184 (201)
T cd07660         109 ARIEYDAYRNDLEALNLGPR----DAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAIS  184 (201)
T ss_pred             hhHhHHHHhccHHHcccCCC----ccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            88888888877744222111    11223367778888888888888888889888865555553444569999999999


Q ss_pred             HHHHHHHHHHHHhHH
Q 017347          242 TYHQRVLQILDQLEG  256 (373)
Q Consensus       242 ~Yh~q~~~iL~~L~~  256 (373)
                      .||.-|.++|++.-.
T Consensus       185 ay~sgn~~~L~~~~~  199 (201)
T cd07660         185 AYFSGNQKQLEQTLK  199 (201)
T ss_pred             HHHHhHHHHHHHHHh
Confidence            999999999987643

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im

>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length

Probab=98.09  E-value=0.0017  Score=60.05  Aligned_cols=159  Identities=20%  Similarity=0.295  Sum_probs=106.6

Q ss_pred             hhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHH
Q 017347           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMR  163 (373)
Q Consensus        85 ~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r  163 (373)
                      ++.|+..+..|+++=.  +  ..-.+|..|+++...+..-+...+..+...++.||..|-.  ..|.++ .+|+.....-
T Consensus        48 ~D~lak~l~~yA~~E~--~--~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~--~cK~~r~elK~~~~ar~  121 (219)
T PF06730_consen   48 GDELAKQLQDYANTEN--P--NLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGT--ICKHARDELKKFNKARN  121 (219)
T ss_pred             hHHHHHHHHHHHhcCC--c--cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            5578999999988532  3  4556999999999999999999999999999999999985  677777 6666222111


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH----HHHHHHHH
Q 017347          164 QEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ----RLIAMVEA  239 (373)
Q Consensus       164 ~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~----~L~~~veA  239 (373)
                      +++- +.    +...|.+.  ++|....-+-+|+..+..++-....-.+.+...|.+.+-+.    |+    -|..||..
T Consensus       122 kEik-q~----~~Leklr~--k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqK----l~DlK~i~sdFv~i  190 (219)
T PF06730_consen  122 KEIK-QL----KQLEKLRQ--KNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQK----LKDLKKIFSDFVTI  190 (219)
T ss_pred             HHHH-HH----HHHHHHHc--cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            1111 11    11112211  12333334555665555555554444444666666666555    44    35588999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHH
Q 017347          240 ERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       240 ql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      ++-||.++.+++..-...+..
T Consensus       191 EM~fHaKALEv~T~a~q~i~~  211 (219)
T PF06730_consen  191 EMVFHAKALEVYTAAYQDIQN  211 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999988887764

Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.

>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

Probab=98.07  E-value=0.0018  Score=59.24  Aligned_cols=161  Identities=15%  Similarity=0.229  Sum_probs=112.4

Q ss_pred             HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l  166 (373)
                      -||+.+..-|.--   +...+..+...+|++++.|++--..+...++ -|+..|.++++. -+.|...=.++|...|=+.
T Consensus        41 ~~Gd~Fa~l~~re---~~p~l~eeF~~~ae~hR~l~k~G~~ll~ai~-~~~s~l~T~l~K-aipDT~lTikkY~~ar~EY  115 (215)
T cd07659          41 EFGDLFANIGVRE---PQPAASEAFTKFGEAHRSIEKFGIELLKTLK-PMLSDLGTYLNK-AIPDTKLTIKKYADVKFEY  115 (215)
T ss_pred             HHHHHHHHHHccC---CChhHHHHHHHhHHHHHHHHHhHHHHHHHhH-HHHHHHHHHHHh-hCchHHHHHHHHHHHHHHH
Confidence            5899999888752   2226889999999999999999999998876 689999999997 8999883344598889999


Q ss_pred             HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKL-------HDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEA  239 (373)
Q Consensus       167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~-------~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veA  239 (373)
                      .+-|+|++-....-.......+.--.+..+.-.|       ++.++-+++|.+.+..-|.-.|..+=+.-..+|..|+.|
T Consensus       116 ~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~a  195 (215)
T cd07659         116 LSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSA  195 (215)
T ss_pred             HHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            9999988554221000000000111222233333       555555555555588877655555533346799999999


Q ss_pred             HHHHHHHHHHHHH
Q 017347          240 ERTYHQRVLQILD  252 (373)
Q Consensus       240 ql~Yh~q~~~iL~  252 (373)
                      ...||..|.+++.
T Consensus       196 isay~~~~~~~~~  208 (215)
T cd07659         196 LSEYHSDCHELLK  208 (215)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th

>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]

Probab=98.07  E-value=0.0015  Score=61.40  Aligned_cols=205  Identities=19%  Similarity=0.242  Sum_probs=137.2

Q ss_pred             HHHHHHHHhcCCCCCCCCccccchHHhhh------hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHH
Q 017347           18 QQQAVFKQFGGGGYGGSDNVVTDEAELHQ------HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSED   91 (373)
Q Consensus        18 ~~q~~~~~~~~~~~~~~~~~~~~e~e~~~------~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~   91 (373)
                      ++|-++.++|  +   ++-++-.|.|.|+      |...|.+...+++   |.-.+-..++.         +.  .||+.
T Consensus       108 tkQillEklG--k---~~rTVD~ElEaQie~Lrd~~rkY~~vl~lar~---fS~~l~qmv~t---------q~--~L~ds  168 (341)
T KOG3876|consen  108 TKQILLEKLG--K---GSRTVDLELEAQIEVLRDTKRKYESVLALARA---FSHHLTQMVET---------QH--ALGDS  168 (341)
T ss_pred             HHHHHHHHhc--C---CccccCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---------HH--HHHHH
Confidence            5677888887  2   3556655666663      5566666666555   55444444442         22  46666


Q ss_pred             HHHhh-------ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017347           92 SRKYG-------SDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (373)
Q Consensus        92 m~~~g-------~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~  164 (373)
                      +....       .|||++            +++++-+++--+.++..+. -||..+..+++. -++|..+-.++|+..|-
T Consensus       169 FadLs~K~~elq~eft~n------------seTqr~l~kngetLl~aln-fFIsSvnTl~nk-Ti~DTL~Ti~qyEsARi  234 (341)
T KOG3876|consen  169 FADLSQKSPELQEEFTYN------------SETQRLLGKNGETLLGALN-FFISSVNTLVNK-TIEDTLMTIKQYESARI  234 (341)
T ss_pred             HHHHhccCHHHHHHhCcC------------HHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhh-hhHHHHHHHHHhhhhhh
Confidence            65443       455522            3456666666666665543 688888888886 78887766677999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          165 EAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYH  244 (373)
Q Consensus       165 ~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh  244 (373)
                      +.+.-|-|+-.-..+-++...    ...+..|+.+|++-++.|.+|.+.+.--|.=.+.+.-.+--.+|.-|-.|...|+
T Consensus       235 EyDayR~Dle~~~l~P~~~~t----~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeENrIkVmh~QL~llhnAiaAYf  310 (341)
T KOG3876|consen  235 EYDAYRTDLEELTLGPRDALT----KNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEENRIKVMHKQLELLHNAIAAYF  310 (341)
T ss_pred             hhhhhhhhHHHhcCCcccccc----ccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            999888888433223222221    2368899999999999999999999988876666664434457888888888899


Q ss_pred             HHHHHHHHHhHHHHH
Q 017347          245 QRVLQILDQLEGEML  259 (373)
Q Consensus       245 ~q~~~iL~~L~~eL~  259 (373)
                      .-....|++--.++.
T Consensus       311 sGNak~LE~tlkqf~  325 (341)
T KOG3876|consen  311 SGNAKQLEQTLKQFN  325 (341)
T ss_pred             cccHHHHHHHHHHhc
Confidence            888777776665554

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=98.05  E-value=0.004  Score=58.23  Aligned_cols=200  Identities=12%  Similarity=0.142  Sum_probs=126.0

Q ss_pred             CCccccchHH-hh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHH
Q 017347           34 SDNVVTDEAE-LH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA  111 (373)
Q Consensus        34 ~~~~~~~e~e-~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al  111 (373)
                      +|+...++.. +. -+.+|=+|+.+.+..-.-.+.+.-.              ...+|.+|..-|+--   ....++++|
T Consensus        10 ~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~--------------~~~f~~s~~~L~~~E---~~~~Ls~al   72 (224)
T cd07623          10 TDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALN--------------TGSFAKSAAMLSNCE---EHTSLSRAL   72 (224)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcc---cchhHHHHH
Confidence            5565544432 22 4677777777776633333333211              224677777777622   223799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH----HHHH---HHHHHHHHHHHHHHHHHHHhhhhccC-
Q 017347          112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR----HLAQ---RYDRMRQEAEAQAIEVSKRQAKVRET-  183 (373)
Q Consensus       112 ~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~----~~k~---~y~~~r~~le~rrld~k~r~~K~~e~-  183 (373)
                      ..+|++..+|+.........-...|.+||..|+.  .+--++    .+.+   .|+.+.+.|..+|...    .|.... 
T Consensus        73 ~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r--~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~----~Kl~~~~  146 (224)
T cd07623          73 SQLAEVEEKIEQLHGEQADTDFYILAELLKDYIG--LIGAIKDVFHERVKVWQNWQNAQQTLTKKREAK----AKLELSG  146 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcC
Confidence            9999999999999999999999999999999985  333333    2211   1233333333333332    121111 


Q ss_pred             --CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347          184 --PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (373)
Q Consensus       184 --~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~  256 (373)
                        .+..++..+++.++.+.++.+..+..+++-....|...+.+...=.-..|..|++.+..|..++.+.|..+..
T Consensus       147 ~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~p  221 (224)
T cd07623         147 RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLP  221 (224)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              1223446677778877777777777777767777766544442212447888999999999999888877643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30

Probab=98.04  E-value=0.00076  Score=62.00  Aligned_cols=129  Identities=19%  Similarity=0.245  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchH-HH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 017347          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDD-AR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRET  183 (373)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~-~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~  183 (373)
                      .++.+|-.+|.+..++......+......+|++||+.|+.   +-+ ++ -++.| +.....++..--.+.+++..    
T Consensus        67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~---y~~svk~~l~~R-~~~q~~~e~~~e~L~~k~~~----  138 (200)
T cd07624          67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLL---YSDAVKDVLKRR-DQFQIEYELSVEELNKKRLE----  138 (200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----
Confidence            5899999999999999999999999999999999999883   322 33 22221 11122222111111122211    


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017347          184 PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL  254 (373)
Q Consensus       184 ~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L  254 (373)
                           +..++..|+.+|+...+.       ..+.+.-.+.+...=.-..|..|++.+..|++++...|..+
T Consensus       139 -----l~~ev~~a~~~~e~~~~~-------~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~  197 (200)
T cd07624         139 -----LLKEVEKLQDKLECANAD-------LKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEV  197 (200)
T ss_pred             -----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                 455788888888888776       44444333322211114489999999999999998888765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis

Probab=98.01  E-value=0.0018  Score=60.02  Aligned_cols=157  Identities=20%  Similarity=0.192  Sum_probs=96.7

Q ss_pred             HHHHHHHhhccCCCCCC-C-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHH----HHHHHH
Q 017347           88 LSEDSRKYGSDNTCTSG-N-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHL----AQRYDR  161 (373)
Q Consensus        88 Lg~~m~~~g~e~~~~~~-s-~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~----k~~y~~  161 (373)
                      ..+++.+-|.---++.+ | .+|.+|..+...++.|+.-...|...+..+++.||+.-++- .-+.+..+    ++.|.+
T Consensus        48 f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~-wkk~~~~ldKd~~k~~kk  126 (231)
T cd07643          48 FLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEE-WKKVANQLDKDHAKEYKK  126 (231)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            56666666653332333 3 79999999999999999999999999999999999999983 33344343    456899


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017347          162 MRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAER  241 (373)
Q Consensus       162 ~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql  241 (373)
                      +|.++..+-.|--+-++|.+..  .......|..|...+..-...+..+.+.+.+..+--+-.+--.++++|..+++.++
T Consensus       127 ~R~elKk~~~dt~klqkk~rKg--~~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~Fvs~l~pVl~~e~  204 (231)
T cd07643         127 ARQEIKKKSSDTIRLQKKARKG--KGDLQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTFVSFLKPVLDEEI  204 (231)
T ss_pred             HHHHHHHHhhhHHHHHHHHhcc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9998875555541111111111  12233456666544333333333333333333333233332334888888888877


Q ss_pred             HHHHHH
Q 017347          242 TYHQRV  247 (373)
Q Consensus       242 ~Yh~q~  247 (373)
                      +.....
T Consensus       205 ~ml~E~  210 (231)
T cd07643         205 SMLGEV  210 (231)
T ss_pred             HHHhhH
Confidence            765544

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=98.00  E-value=0.0017  Score=60.28  Aligned_cols=139  Identities=14%  Similarity=0.111  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHH-HhhhhccCCCC
Q 017347          109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSK-RQAKVRETPGN  186 (373)
Q Consensus       109 ~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~-r~~K~~e~~~~  186 (373)
                      .....+..+...|...-......+...++.|+..+..  .++.++ .+++ -++.+.+.+..+-.+.+ .+.|.   ...
T Consensus        71 ~~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~--~~~~i~k~IkK-R~~k~lDyd~~~~k~~k~~~~k~---~~~  144 (216)
T cd07599          71 ARLSRYVKALEELKKELLEELEFFEERVILPAKELKK--YIKKIRKTIKK-RDHKKLDYDKLQNKLNKLLQKKK---ELS  144 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHhcCC---CCC
Confidence            3445566666666554444556888999999999996  788877 4444 22222233333333322 22221   112


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQ  253 (373)
Q Consensus       187 ~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~  253 (373)
                      ..-..+|..|+.+++++++.+..|+..+...+....+-...+.-..+.+|+-.|+.|+...+..|..
T Consensus       145 ~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~~  211 (216)
T cd07599         145 LKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQE  211 (216)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2236799999999999999999999999988876544443344458888999999999888776654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=97.94  E-value=1.2e-06  Score=87.66  Aligned_cols=59  Identities=27%  Similarity=0.471  Sum_probs=54.6

Q ss_pred             CCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      .+...++++.||...+++||.|+++|+|++++..|+-.|.|+.+|-+||||+.||+.++
T Consensus       546 ~~~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld  604 (848)
T KOG2222|consen  546 TGAKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD  604 (848)
T ss_pred             hhhHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999875

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=97.90  E-value=0.015  Score=54.84  Aligned_cols=201  Identities=11%  Similarity=0.125  Sum_probs=125.0

Q ss_pred             CCccccchH-Hhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhc-cCCCCCCChHHHH
Q 017347           34 SDNVVTDEA-ELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS-DNTCTSGNTLSKA  110 (373)
Q Consensus        34 ~~~~~~~e~-e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~-e~~~~~~s~~g~a  110 (373)
                      +|+...+.. .+. -+.||-+|+.++...-.--+.+.-              ...-+|.+|..-|. |.    +..++++
T Consensus        20 ~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~--------------~~~efa~s~~~L~~~E~----~~~ls~~   81 (234)
T cd07664          20 SDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSA--------------NTAAFAKSAAMLGNSED----HTALSRA   81 (234)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHcCcc----cchHHHH
Confidence            555553433 222 456666677666653222222211              12245777766666 43    2379999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH----HHH---HHHHHHHHHHHHHHHHH-HHHhhhhcc
Q 017347          111 ALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR----HLA---QRYDRMRQEAEAQAIEV-SKRQAKVRE  182 (373)
Q Consensus       111 l~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~----~~k---~~y~~~r~~le~rrld~-k~r~~K~~e  182 (373)
                      |..+|+.+.+|..........-.-.|-+||..|+.  .+--++    .|.   ..|+..-+.|..+|... |-+.. .+ 
T Consensus        82 l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR--~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~-~k-  157 (234)
T cd07664          82 LSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIR--LIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYA-NK-  157 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc-
Confidence            99999999999999999999999999999999985  444443    111   12334444455444444 11110 01 


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347          183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (373)
Q Consensus       183 ~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~  256 (373)
                      ..+..++..+++.+|.+.++.+..+..+++-....+...+.+.-.=+-..|..|++.+..|..++.+.+..+..
T Consensus       158 ~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p  231 (234)
T cd07664         158 PDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLP  231 (234)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            11234566788888877777777777776667766655544431112447888899999999999888877654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.86  E-value=1.4e-05  Score=83.23  Aligned_cols=57  Identities=28%  Similarity=0.523  Sum_probs=49.1

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCC-eEEEEe-CCeeeEecCCCeeecc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNG-WAEGEC-KGKAGWFPFGYIERRD  362 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~g-W~~G~~-~g~~G~fP~~Yve~l~  362 (373)
                      +....+|||||.+..+..|++.+||.+.|+..+.+| |++.+. +|+ ||||+||+..+.
T Consensus        89 dpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvN  147 (1157)
T KOG4278|consen   89 DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVN  147 (1157)
T ss_pred             CCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-cccccccccccc
Confidence            344789999999999999999999999999988554 888887 565 999999998764

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=97.85  E-value=0.016  Score=53.85  Aligned_cols=164  Identities=11%  Similarity=0.132  Sum_probs=107.9

Q ss_pred             HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l  166 (373)
                      -||.++..-|.--   .+..++.+|..||++..++..........-.-.|.+||+.|+.  .+.-++..-.+-.++...+
T Consensus        43 efa~~~~~L~~~E---~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r--~~~Svk~~~~~R~~~~~~~  117 (216)
T cd07627          43 EFAETLEALSSLE---LSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIR--SIGSVRAAFAQRQKLWQYW  117 (216)
T ss_pred             HHHHHHHHHHHhh---cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            4677777777632   2347999999999999999999999888888888889999885  4444442222122223333


Q ss_pred             HHHHHHH-HHH--hhhhccC-----CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEV-SKR--QAKVRET-----PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE  238 (373)
Q Consensus       167 e~rrld~-k~r--~~K~~e~-----~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve  238 (373)
                      ++---++ +++  ..|....     .+...+..+++.++.+.++++..+..+++.+...+...+.+...=.-..|..|++
T Consensus       118 ~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e  197 (216)
T cd07627         118 QSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLE  197 (216)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322233 221  1222111     0112456677778888888888877777778887766554443222558889999


Q ss_pred             HHHHHHHHHHHHHHHhH
Q 017347          239 AERTYHQRVLQILDQLE  255 (373)
Q Consensus       239 Aql~Yh~q~~~iL~~L~  255 (373)
                      ++..+++.+.+.|..+.
T Consensus       198 ~~ie~~k~~ie~We~f~  214 (216)
T cd07627         198 SAIESQKELIELWETFY  214 (216)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999998887764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=6.9e-06  Score=81.87  Aligned_cols=60  Identities=28%  Similarity=0.544  Sum_probs=53.1

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEe-CCeeeEecCCCeeeccCCCch
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~-~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ++|++|||..++.+||++..||++.+.+.. .+|||+|.+ .|..|+||+.||+++...-++
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~s   65 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVAS   65 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccch
Confidence            589999999999999999999999988764 789999999 999999999999998654333

>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p

Probab=97.79  E-value=0.011  Score=55.60  Aligned_cols=216  Identities=13%  Similarity=0.119  Sum_probs=119.3

Q ss_pred             HHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCC-chhhHHHHHHHHhhcc
Q 017347           20 QAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV-EIGTKLSEDSRKYGSD   98 (373)
Q Consensus        20 q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~-e~~~~Lg~~m~~~g~e   98 (373)
                      -+++|||+ --|   |+.-    |++..--+-|.+=.+      .+++...++.+... -+++ -...-+|..+...|..
T Consensus         4 rk~lkq~~-~p~---d~~~----el~~~rp~vk~~y~~------~~~l~~~~~~lvk~-rr~La~~~~dfg~~l~~Ls~~   68 (230)
T cd07625           4 RKTLKQFA-PPY---DEYT----ELAEFRPLVKSIYLT------AQDLQEKLLRVSKA-RKQLSLEEADFGQKLIQLSVE   68 (230)
T ss_pred             HHhhhccC-cCC---CCCH----HHHHhhHHHHHHHHH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Confidence            36899998 333   6655    888555555543221      22344444433210 1110 0112578888888775


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHH------HHHHHHHHHH
Q 017347           99 NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDR------MRQEAEAQAI  171 (373)
Q Consensus        99 ~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~------~r~~le~rrl  171 (373)
                      -+   ...+|+|+.++|++...++.........-...|-+||..++.  +.-.++ .+..|+.-      +-+.+.++|.
T Consensus        69 E~---~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~--~~~~vKealtnR~~~~re~~qAq~~~~~K~~  143 (230)
T cd07625          69 ET---HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISR--DAYVVKEALTNRHLLMRELIQAQQNTKSKQE  143 (230)
T ss_pred             cc---cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43   347999999999999999999999999999999999999885  444444 33333222      2222333333


Q ss_pred             HHHHHhhhhc-cCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          172 EVSKRQAKVR-ETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQI  250 (373)
Q Consensus       172 d~k~r~~K~~-e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~i  250 (373)
                      ...+-+.+.. ...+..++..+|+.|+.+-+++...+..+.......+...+.....-.-..|..|+..+..|+++....
T Consensus       144 ~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~  223 (230)
T cd07625         144 AARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSL  223 (230)
T ss_pred             HHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3311111100 000122334455555444444443333333323333322211111101448889999999999999888


Q ss_pred             HHHhH
Q 017347          251 LDQLE  255 (373)
Q Consensus       251 L~~L~  255 (373)
                      |+.+.
T Consensus       224 lE~~r  228 (230)
T cd07625         224 LERIR  228 (230)
T ss_pred             HHhcc
Confidence            77653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4773 consensus NADPH oxidase [Energy production and conversion]

Probab=97.65  E-value=6e-06  Score=79.99  Aligned_cols=62  Identities=21%  Similarity=0.419  Sum_probs=56.9

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ....+.+++||.+....||.|.+||++.+....+.+||.|...|.+||||.+|+..++..|.
T Consensus       174 ~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe  235 (386)
T KOG4773|consen  174 AAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE  235 (386)
T ss_pred             hhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence            34568899999999999999999999999999999999999999999999999999876665

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=97.61  E-value=5.8e-05  Score=77.58  Aligned_cols=100  Identities=14%  Similarity=0.274  Sum_probs=69.1

Q ss_pred             hhhHHHHHhhhhcccccCCCCC-CchhhHHHHHHHHhhccCCC---CCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017347           60 GKHFQRDIVRGVEGYIVTGSKQ-VEIGTKLSEDSRKYGSDNTC---TSGNT-LSKAALSYGRARAQMEKERGNLLKALGT  134 (373)
Q Consensus        60 ~k~~~~~i~r~~e~~~~~~~~~-~e~~~~Lg~~m~~~g~e~~~---~~~s~-~g~al~~~g~a~~~l~~~~~~~~~~~~~  134 (373)
                      |..|.|.|.+..-.+++- .+. .-...++++.+..+-=|.=+   ++|.. .+.+|..||....+++++|..++.++..
T Consensus        32 tnkfik~~ikdg~~li~a-~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~~Ase  110 (812)
T KOG1451|consen   32 TNKFIKELIKDGKELISA-LKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVGNASE  110 (812)
T ss_pred             HHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            344788887776655542 222 12234566666655433221   12222 4889999999999999999999999999


Q ss_pred             hhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347          135 QVAEPLRAMVLGAPLDDARHLAQRYDR  161 (373)
Q Consensus       135 ~fl~PL~~~~~~~~lk~~~~~k~~y~~  161 (373)
                      .+|+||..|-.- ++-.+.+.|+.||+
T Consensus       111 ~li~PlekFRkE-qIG~~KE~KkKydK  136 (812)
T KOG1451|consen  111 SLIEPLEKFRKE-QIGTLKEEKKKYDK  136 (812)
T ss_pred             HHHhHHHHHHHH-HhhhhHHHHhhhhh
Confidence            999999999875 77766677888876

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=97.58  E-value=0.06  Score=50.98  Aligned_cols=134  Identities=15%  Similarity=0.176  Sum_probs=87.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 017347          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRET  183 (373)
Q Consensus       105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~  183 (373)
                      ..+|.+|-.+|.+..+++..-......+..+|++||+.|+.  =...++ -+++| +.+-.+++.++-...+.+.    +
T Consensus       106 ~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~--y~~slK~vlk~R-~~~Q~~le~k~e~l~k~~~----d  178 (243)
T cd07666         106 EELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVL--YSETLMGVIKRR-DQIQAELDSKVEALANKKA----D  178 (243)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhh----h
Confidence            35999999999999999999999999999999999999984  222233 33332 3334445544444422111    1


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017347          184 PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL  254 (373)
Q Consensus       184 ~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L  254 (373)
                       + ..+..+++.+++|.++....       +...|...+.+..+=.-.-+..|++-+..|+++|...++.+
T Consensus       179 -r-~~~~~ev~~~e~kve~a~~~-------~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f  240 (243)
T cd07666         179 -R-DLLKEEIEKLEDKVECANNA-------LKADWERWKQNMQTDLRSAFTDMAENNISYYEECLATWESF  240 (243)
T ss_pred             -H-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1 24566788888888887555       44444333333311113378888999999999998877654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p

Probab=97.52  E-value=0.065  Score=48.67  Aligned_cols=139  Identities=11%  Similarity=0.142  Sum_probs=85.9

Q ss_pred             HHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 017347           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE  167 (373)
Q Consensus        88 Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le  167 (373)
                      ||..+..-|.--+    ..+|.+|-.+|.+...++.....+...+..+|++||+.++.   +-.+  +|.    +.+.=+
T Consensus        44 fg~~~~~L~~~E~----~~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~---y~~s--~k~----~lk~R~  110 (185)
T cd07628          44 LATQFQKLGSLES----GEITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLH---YILS--LKN----LIKLRD  110 (185)
T ss_pred             HHHHHHHHHhhCc----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHH----HHHHHH
Confidence            5555555554322    13999999999999999999999999999999999999883   2111  111    111122


Q ss_pred             HHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          168 AQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRV  247 (373)
Q Consensus       168 ~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~  247 (373)
                      ..++||-.-..-.        ...++..|+.+++..-..       +.+.+...+.....=.-..|.+|.+.+..|++.+
T Consensus       111 ~kq~d~e~l~e~l--------l~~~ve~a~~~~e~f~~~-------~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~  175 (185)
T cd07628         111 QKQLDYEELSDYL--------LTDEVENAKETSDAFNKE-------VLKEYPNFERIKKQEIKDSLGALADGHIDFYQGL  175 (185)
T ss_pred             HHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334441110000        122455555555555444       5655644332222112458999999999999999


Q ss_pred             HHHHHHh
Q 017347          248 LQILDQL  254 (373)
Q Consensus       248 ~~iL~~L  254 (373)
                      ...+..+
T Consensus       176 ~~~W~~~  182 (185)
T cd07628         176 VEDWEKV  182 (185)
T ss_pred             HHHHHhh
Confidence            8888765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1

Probab=97.51  E-value=0.027  Score=53.09  Aligned_cols=147  Identities=10%  Similarity=0.106  Sum_probs=97.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH----HHHHH---HHHHHHHHHHHHHHHHHHh
Q 017347          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR----HLAQR---YDRMRQEAEAQAIEVSKRQ  177 (373)
Q Consensus       105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~----~~k~~---y~~~r~~le~rrld~k~r~  177 (373)
                      ..++++|..+|+.+.+|............-+|-+||..|+.  -+--++    .|.+-   |+.+-..|..+|....+..
T Consensus        76 ~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiR--li~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~  153 (234)
T cd07665          76 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIR--LLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLL  153 (234)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999998885  222222    33332   3445555655555552221


Q ss_pred             hhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Q 017347          178 AKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ-RLIAMVEAERTYHQRVLQILDQLE  255 (373)
Q Consensus       178 ~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~-~L~~~veAql~Yh~q~~~iL~~L~  255 (373)
                      ...+. .+...+..+++.++.|.++.+..+..+++-....+...+.+.-. .++ .+..|++++.....++.+.+..+.
T Consensus       154 ~~~~~-dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~-Dfk~~v~~fles~ie~qke~ie~We~fl  230 (234)
T cd07665         154 WANKP-DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSK-DFKNHIIKYLETLLHSQQQLVKYWEAFL  230 (234)
T ss_pred             hcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11111 12335566777777777777777777766677666555444410 122 477788888888888877776654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

Probab=97.44  E-value=0.014  Score=53.82  Aligned_cols=150  Identities=13%  Similarity=0.171  Sum_probs=88.3

Q ss_pred             HHHHHHHhhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHH-HHHHHHHHHHHH
Q 017347           88 LSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA-RHLAQRYDRMRQ  164 (373)
Q Consensus        88 Lg~~m~~~g~e~~--~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~-~~~k~~y~~~r~  164 (373)
                      |+.++.+||.-|.  +..+..+|.+|-.+|.+....+..-+.+... ..+|++||+.++.   +-++ +..-+..+-..-
T Consensus        47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~---ya~slk~vlk~r~~~q~  122 (201)
T cd07622          47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLF---FADSLRAVCKKHELLQY  122 (201)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            5666667776554  1344578999999999999888888887765 4889999999983   3332 222221111112


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          165 EAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYH  244 (373)
Q Consensus       165 ~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh  244 (373)
                      +++..- |+..++.  .      +...+++.|+..+++..+.       +.+.+...+.+...=.-..|.+|++.|..|+
T Consensus       123 ~~e~~~-~~L~~k~--~------~l~~~ve~a~~~~e~f~~~-------~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~  186 (201)
T cd07622         123 DLEKAE-DALANKK--Q------QGEEAVKEAKDELNEFVKK-------ALEDVERFKKQKVRDLKEILISYAKLQIKLA  186 (201)
T ss_pred             HHHHHH-HHHHHHH--H------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222211 2211110  0      1234555555554444333       5555544333321111448999999999999


Q ss_pred             HHHHHHHHHhHHH
Q 017347          245 QRVLQILDQLEGE  257 (373)
Q Consensus       245 ~q~~~iL~~L~~e  257 (373)
                      +.+..+|..+.+-
T Consensus       187 ~~~~~~W~~~~~~  199 (201)
T cd07622         187 KKGLQTWTNIKEC  199 (201)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and

>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p

Probab=97.34  E-value=0.089  Score=47.87  Aligned_cols=141  Identities=13%  Similarity=0.151  Sum_probs=81.2

Q ss_pred             HHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchH-HHHHHHHHHHHHHHH
Q 017347           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDD-ARHLAQRYDRMRQEA  166 (373)
Q Consensus        88 Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~-~~~~k~~y~~~r~~l  166 (373)
                      ||..+-..+..-   ++..++.+|-++|.|.......-+.+...+..+|.+||+.++.   +-. ++.+-+ |+      
T Consensus        45 lG~~fn~ls~~E---~~~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~---y~~s~k~vlk-~R------  111 (187)
T cd07629          45 LGGRFNAFSLEE---QKSELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ---FAGVVRELLK-YR------  111 (187)
T ss_pred             HHHHHHHHhhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHH-HH------
Confidence            344444444432   2236899999999999999999999999999999999999983   322 222222 11      


Q ss_pred             HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (373)
Q Consensus       167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q  246 (373)
                      ..+.++|..-..-.         -.++..+..++.+..+.  .    ....|.-...+...-.=.-|..|...+..|..+
T Consensus       112 ~~K~~Q~e~l~~~L---------~e~~~~~~~~~~~~~~~--~----~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~  176 (187)
T cd07629         112 KLKHVQYEMTKDSL---------LESALVAASDDLVISST--I----KQKDLPRFQREREADLREILKNYSKYHKDWAKQ  176 (187)
T ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            11122221111111         11333444455555322  1    112221111111100033788899999999999


Q ss_pred             HHHHHHHhHH
Q 017347          247 VLQILDQLEG  256 (373)
Q Consensus       247 ~~~iL~~L~~  256 (373)
                      |.++|..++.
T Consensus       177 ~~~~W~~~~~  186 (187)
T cd07629         177 NLEAWKEAKA  186 (187)
T ss_pred             HHHHHHHhhc
Confidence            9999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.31  E-value=0.0071  Score=66.11  Aligned_cols=116  Identities=16%  Similarity=0.242  Sum_probs=87.9

Q ss_pred             HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l  166 (373)
                      .+|.-...+....+  .+-..|.+|.+|..+.+.+......+...+...+..||..|.++ |+.+++..|+.++++.++.
T Consensus        60 ~f~~~~~d~~~~~~--~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~-dl~~v~~~kk~f~ka~~~~  136 (785)
T KOG0521|consen   60 QFGKGLKDLFSLGQ--DEEVISETLQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKG-DLHEVKELKKLFEKASEEY  136 (785)
T ss_pred             HHHHHHHHHHHhcc--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhhhhHHHHHHHhhH
Confidence            34444444433333  44467899999999999999999999999999999999999999 9999998899999999999


Q ss_pred             HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN  206 (373)
Q Consensus       167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~  206 (373)
                      +.-+.-+.+...+.+ .....+.+.+|..+..+|.-+.-.
T Consensus       137 d~a~~k~~~l~k~~~-~~~~~e~~~~l~~~r~~f~~~~~~  175 (785)
T KOG0521|consen  137 DLALVKYSRLPKKRR-SKVKTEVEEELAAARRKFQLTALD  175 (785)
T ss_pred             HHHHHHhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHH
Confidence            988877722211111 222345566888888888887666

>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins

Probab=97.29  E-value=0.14  Score=47.03  Aligned_cols=188  Identities=11%  Similarity=0.065  Sum_probs=107.8

Q ss_pred             CCccccchHHhh--hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhc-cCCCCCCChHHHH
Q 017347           34 SDNVVTDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS-DNTCTSGNTLSKA  110 (373)
Q Consensus        34 ~~~~~~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~-e~~~~~~s~~g~a  110 (373)
                      +|++..++...-  .|.+|-+++..+...-.-.+.+...              ...+|.++..-|+ |.+  +...++++
T Consensus         2 ~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~--------------~~~fs~al~~L~~~E~~--~~~~l~~~   65 (198)
T cd07630           2 VDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANA--------------LGHLSSSLQLCVGLDEA--SVVALNRL   65 (198)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhccccc--chHhHHHH
Confidence            355554554333  6778888887777644444444221              1134555544443 333  33378999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCCCCcch
Q 017347          111 ALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV-SKRQAKVRETPGNPDL  189 (373)
Q Consensus       111 l~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~-k~r~~K~~e~~~~~~~  189 (373)
                      |.++|++..++..........-...|-+||+.|+.  .+.-++.+-.+--+.....++---++ |+| .+.+     ..+
T Consensus        66 l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r--~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar-~~k~-----~~a  137 (198)
T cd07630          66 CTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSR--YSESEKDMLFRRTCKLIEFENASKALEKAK-PQKK-----EQA  137 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhH-----HHH
Confidence            99999999999999999999999999999999885  44333322111111122222222222 222 2211     134


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          190 ALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD  252 (373)
Q Consensus       190 ~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~  252 (373)
                      +...+.|+.+|++..+.       +...|...+.+.-.-.=..|..|++.+..--..+.++|.
T Consensus       138 e~~~~~a~~~fe~iS~~-------~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~  193 (198)
T cd07630         138 EEAKKKAETEFEEISSL-------AKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLT  193 (198)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777777776       666665554444100112566777777766666655544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]

Probab=97.27  E-value=0.00014  Score=75.60  Aligned_cols=59  Identities=22%  Similarity=0.314  Sum_probs=51.2

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~  364 (373)
                      ....+.++|||.+.+..||++.+||++.|+... -+||++.. .|+.|+||+|-+..+.+.
T Consensus       499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~-R~WW~~kn~~G~~GyvP~nIL~~~~~~  558 (721)
T KOG3557|consen  499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDDG-RKWWKVKNGHGRAGYVPSNILAPLQPE  558 (721)
T ss_pred             cceeeeeehhhhcccchhhhhhhhhhhhhhhcc-ccceeccCccCCCCCcchhhhccCCCc
Confidence            345789999999999999999999999998864 57999998 899999999988776543

>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5

Probab=96.92  E-value=0.35  Score=45.05  Aligned_cols=177  Identities=16%  Similarity=0.182  Sum_probs=98.7

Q ss_pred             CCCccccchH-Hhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHH
Q 017347           33 GSDNVVTDEA-ELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKA  110 (373)
Q Consensus        33 ~~~~~~~~e~-e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~a  110 (373)
                      -+|++..+|- .+. .|.+|=+++..++..-..-+.+.-      +      - + .+|..|..-+.|    .++.++++
T Consensus        20 e~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~------~------~-~-~~s~al~~l~~e----e~t~L~ka   81 (218)
T cd07663          20 EVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVAD------D------Y-I-HISAALNSVAAE----EPTVIKKY   81 (218)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H------H-H-HHHHHHHhhccc----ccchHHHH
Confidence            4667665554 333 688888888887765444444422      0      0 1 344444433332    44479999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHH--HHHHHHHHH-HHHhhhhccCCCCc
Q 017347          111 ALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ--EAEAQAIEV-SKRQAKVRETPGNP  187 (373)
Q Consensus       111 l~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~--~le~rrld~-k~r~~K~~e~~~~~  187 (373)
                      |.++|+...+|...+.....+---.|-++|+.|+.  ++.-++.+-  |+|+|.  ..++-.-.+ |+| .+.++   .+
T Consensus        82 ls~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r--~~~A~K~ll--~rR~ral~~~e~A~~~L~KaR-~k~ke---v~  153 (218)
T cd07663          82 LLKVAELFEKLRKVEDRVASDQDLKLTELLRYYML--NIEAAKDLL--YRRARALADYENSNKALDKAR-LKSKD---VK  153 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-hhhhh---HH
Confidence            99999999999999999999999999999999885  444443211  122221  122211122 222 22111   12


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 017347          188 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT  242 (373)
Q Consensus       188 ~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~  242 (373)
                      +++.+++.|+.+|++..+.       +...|...+.+.-.-.=..|..|.+.++.
T Consensus       154 ~aE~~~~ea~~~Fe~IS~~-------~k~El~rF~~~Rv~~Fk~~lve~~E~~ik  201 (218)
T cd07663         154 QAEAHQQECCQKFEKLSES-------AKQELISFKRRRVAAFRKNLIEMTELEIK  201 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2344555555556555555       77667665544410001245555555544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=96.88  E-value=0.0012  Score=71.61  Aligned_cols=55  Identities=20%  Similarity=0.363  Sum_probs=47.0

Q ss_pred             eEEEEeccCCCC--------CCCCccCCCCCEEEEEee-cCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAE--------SDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~--------~~~ELsl~~gd~I~V~~~-~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ...+|+|||++-        .+.||+|++|+||.|+.. +.+|++.|+++|+.|++|+|+|..+
T Consensus      1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred             eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccc
Confidence            456889999863        356899999999998876 4678999999999999999999864

>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6

Probab=96.88  E-value=0.38  Score=44.73  Aligned_cols=94  Identities=11%  Similarity=0.125  Sum_probs=65.6

Q ss_pred             CCccccchH-Hhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHH
Q 017347           34 SDNVVTDEA-ELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA  111 (373)
Q Consensus        34 ~~~~~~~e~-e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al  111 (373)
                      +|++..+|. +|. +|.+|-+|+.+++..-..-+.+.-..              ..+|.++..-|+.    ..+.++++|
T Consensus        21 ~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~--------------~~~s~sl~~L~~~----e~t~L~~~l   82 (218)
T cd07662          21 VDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDY--------------NRIGSSLYTLGTQ----DSTDICKFF   82 (218)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhccc----cchhHHHHH
Confidence            567776665 555 89999999999888655555442211              1345554444443    334799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       112 ~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      .+++++..+|.+........=.-.+.+-|+-|+.
T Consensus        83 ~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r  116 (218)
T cd07662          83 LKVSELFDKTRKIEARVAADEDLKLSDLLKYYLR  116 (218)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            9999999999999888877666667777777764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays

>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]

Probab=96.82  E-value=0.0014  Score=68.19  Aligned_cols=56  Identities=16%  Similarity=0.332  Sum_probs=47.5

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      +..++|+|-+.++.+++|.|.+||+|.++...++-||.+.+  ....|+||+|||--+
T Consensus         8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen    8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence            45689999999999999999999999999987766676665  457899999999544

>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]

Probab=96.77  E-value=0.00079  Score=71.71  Aligned_cols=60  Identities=17%  Similarity=0.478  Sum_probs=52.9

Q ss_pred             CCCceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEE--eCCeeeEecCCCeeecc
Q 017347          303 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGE--CKGKAGWFPFGYIERRD  362 (373)
Q Consensus       303 ~~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~--~~g~~G~fP~~Yve~l~  362 (373)
                      .+..+.|.++|.|.+.+++++++.+|+++.|++.. .+||-+++  ++|..|+||.+||+.+.
T Consensus       575 ~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  575 SPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             CCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            34557899999999999999999999999988875 77999999  69999999999998753

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=96.75  E-value=0.37  Score=45.24  Aligned_cols=91  Identities=13%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCC--chhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV--EIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~--e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~  124 (373)
                      +.|++-|+.+++.+..+.+.|..-.--     --.+  +.+..|+.-..+|+.-.   ....|..++..+=.....|+..
T Consensus         4 d~G~~~l~~r~~~g~~~~~el~~f~ke-----Ra~iE~eYak~L~kLakk~~~~~---~~gsl~~a~~~i~~e~e~~a~~   75 (236)
T cd07651           4 DAGFDVIQTRIKDSLRTLEELRSFYKE-----RASIEEEYAKRLEKLSRKSLGGS---EEGGLKNSLDTLRLETESMAKS   75 (236)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHccccCCC---CcchHHHHHHHHHHHHHHHHHH
Confidence            457778888888777777776432210     0011  22334444444444211   2235889999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHhc
Q 017347          125 RGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       125 ~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      +..|...+...+.+||..|..
T Consensus        76 H~~~a~~L~~~v~~~l~~~~~   96 (236)
T cd07651          76 HLKFAKQIRQDLEEKLAAFAS   96 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999986

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53

Probab=96.64  E-value=0.59  Score=43.64  Aligned_cols=197  Identities=14%  Similarity=0.157  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCC-ChHHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSG-NTLSKAALSYGRARAQMEKER  125 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~-s~~g~al~~~g~a~~~l~~~~  125 (373)
                      +..+++|..-.   ++|++.+.-.+.+           +....+.+.+-|+---.+++ -.+|.+|+.+.+.++.|....
T Consensus        21 nP~lrnlv~~G---~~Y~kal~a~~~a-----------~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~l   86 (232)
T cd07646          21 NPSLRNFIAMG---KNYEKALASVTFA-----------AKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQL   86 (232)
T ss_pred             ChhHHHHHHHh---HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            67788888654   4588777433332           22355666666664332222 368999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH---HHHH-HHHHHHHHHHHHhhhhccCCCCcc--hHHHHHHHHHH
Q 017347          126 GNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD---RMRQ-EAEAQAIEVSKRQAKVRETPGNPD--LALKLDAAEVK  199 (373)
Q Consensus       126 ~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~---~~r~-~le~rrld~k~r~~K~~e~~~~~~--~~~eL~~ae~K  199 (373)
                      +.+...+....|.||..-++- |++-+..--++|+   +.+. .|+.-+-++|+-+.|+. ..+++.  .+.+++--+.=
T Consensus        87 e~~lk~Fh~eli~pLE~k~E~-D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsq-g~k~~~ky~~ke~q~~~~~  164 (232)
T cd07646          87 EEMLKSFHNELLTQLEQKVEL-DSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQ-GSKNPQKYSDKELQYIEAI  164 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCchhhHHHHHHHHHHH
Confidence            999999999999999999986 8888774344473   2222 25666666644433422 112211  11111111100


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          200 LHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       200 ~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      =....+.-.........+|.+- --.=.+.+..-.++..-...||.+...+|.+=-..|..
T Consensus       165 ~~~q~ele~f~~~~~k~Al~EE-rRRycflvdk~C~~~~~~~~yh~k~~~lL~~kl~~Wqe  224 (232)
T cd07646         165 SNKQGELENYVSDGYKTALTEE-RRRYCFLVEKQCAVAKNSIAYHSKGKELLTQKLPSWQQ  224 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            0111111111111222333221 11112334444556666788999888888776666665

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=96.60  E-value=0.001  Score=68.09  Aligned_cols=56  Identities=21%  Similarity=0.486  Sum_probs=50.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCE-EEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDY-VVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~-I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      ...+.++|||.+..+.+|+|..||. ..+++..+..||..+.  .|..|++|.|||...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            3578999999999999999999999 6788888899999876  789999999999875

>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein

Probab=96.60  E-value=0.56  Score=44.82  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhh-cc-cccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGV-EG-YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~-e~-~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~  124 (373)
                      |.|++-|+.+++-+....+.|..-. |- -+.-.|-.  ...+|+. ...-|.+.|     .|..++..+-....+|+..
T Consensus         4 ~~G~~~l~~r~k~g~~~~kel~~flkeRa~IEe~Yak--~L~klak-~~~~~~e~G-----tl~~~w~~~~~~~E~~a~~   75 (261)
T cd07674           4 NAGFDVLYHNMKHGQISTKELADFVRERAAIEETYSK--SMSKLSK-MASNGSPLG-----TFAPMWEVFRVSSDKLALC   75 (261)
T ss_pred             CcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-cccCCCccc-----hHHHHHHHHHHHHHHHHHH
Confidence            5677778887777666666663322 00 00000100  1123442 222244554     7899999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHhc
Q 017347          125 RGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       125 ~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      ...|...+. ..+.|+..|.+
T Consensus        76 H~~l~~~L~-~~~~~i~~~~~   95 (261)
T cd07674          76 HLELMRKLN-DLIKDINRYGD   95 (261)
T ss_pred             HHHHHHHHH-HHHHHHHHHHH
Confidence            999999997 56688887765

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=96.48  E-value=0.001  Score=68.27  Aligned_cols=54  Identities=19%  Similarity=0.355  Sum_probs=45.7

Q ss_pred             eEEEEeccCCCCCCC-------CccCCCCCEEEEEeecCCCeEEEEeC-----CeeeEecCCCeee
Q 017347          307 FLGEVVHPYQAESDV-------ELTLSVGDYVVVRKVTNNGWAEGECK-----GKAGWFPFGYIER  360 (373)
Q Consensus       307 ~~~~alydf~a~~~~-------ELsl~~gd~I~V~~~~~~gW~~G~~~-----g~~G~fP~~Yve~  360 (373)
                      ..++|+|||++..+.       .|+|..||++.|+++.|..||.+.+.     +..|++|+..++.
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence            567899999998755       58999999999999999999999873     5689999976543

>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein

Probab=96.45  E-value=0.92  Score=43.63  Aligned_cols=91  Identities=8%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~  124 (373)
                      |.|++-|+.+++.++...+.+..-+-    - --.+|  .+..|..-+.+++.-.   ....|..++..+-....+|+..
T Consensus        11 ~~G~~~L~~r~k~g~~~~kel~~f~k----e-Ra~iEe~Yak~L~kLak~~~~~~---~~Gt~~~~~~~~~~e~e~~a~~   82 (269)
T cd07673          11 NSGFDVLYHNMKHGQISTKELSDFIR----E-RATIEEAYSRSMTKLAKSASNYS---QLGTFAPVWDVFKTSTEKLANC   82 (269)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHhhhccCC---CcChHHHHHHHHHHHHHHHHHH
Confidence            56777788777776666655533221    0 00011  2233444444443211   2226888999998888999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHhcC
Q 017347          125 RGNLLKALGTQVAEPLRAMVLG  146 (373)
Q Consensus       125 ~~~~~~~~~~~fl~PL~~~~~~  146 (373)
                      ...|...+. ..+.+|..|...
T Consensus        83 H~~la~~L~-~~~~~l~~~~~~  103 (269)
T cd07673          83 HLELVRKLQ-ELIKEVQKYGEE  103 (269)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHH
Confidence            999999998 488999999864

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Probab=96.42  E-value=0.88  Score=43.03  Aligned_cols=127  Identities=11%  Similarity=0.173  Sum_probs=84.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH-------HHH
Q 017347          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV-------SKR  176 (373)
Q Consensus       105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~-------k~r  176 (373)
                      ..+|..|-.|+.+..+.+..-.++.......|+.+|+.|+.   +-++. .+-+       .=+..-+||       ..|
T Consensus       103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~---Y~~slk~vlK-------~RdqkQ~d~E~l~E~l~~r  172 (240)
T cd07667         103 GELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYIL---YSESMKNVLK-------KRDQVQAEYEAKLEAVALR  172 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999883   33322 2212       123333444       111


Q ss_pred             hhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017347          177 QAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL  254 (373)
Q Consensus       177 ~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L  254 (373)
                                   ..+++.-+.+.+++...+...++++.+.+...+...+.=.-..|..|.+.+.+||+.|..+++.+
T Consensus       173 -------------re~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~  237 (240)
T cd07667         173 -------------KEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKCLTAWESI  237 (240)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         12455555666666666555555566666443322211114589999999999999999988765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=96.38  E-value=0.9  Score=42.78  Aligned_cols=66  Identities=15%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH
Q 017347          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV  173 (373)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~  173 (373)
                      .+..++..+=.....++..+..+...+.+.++.||..+..  +++..+ .....+.++.+.+...--++
T Consensus        62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~--~~~~~rK~~~~~~~kl~~~~~~~~~~l  128 (251)
T cd07653          62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS--ELRQERKKHLSEGSKLQQKLESSIKQL  128 (251)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888999999999999999999999999986  444444 44444445444444444444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=96.38  E-value=0.5  Score=44.63  Aligned_cols=94  Identities=21%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcc--cccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEG--YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~--~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~  124 (373)
                      +.+++.|+.+++-+..+.+.|+.-..-  -+...|-.  ...+|+.-..+.+. -+  + ..|..++..+......++..
T Consensus         4 ~~g~~~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK--~L~kLa~k~~k~~~-~~--~-Gtl~~aw~~~~~e~e~~a~~   77 (239)
T cd07658           4 QKGFEELRRYVKQGGDFCKELATVLQERAELELNYAK--GLSKLSGKLSKASK-SV--S-GTLSSAWTCVAEEMESEADI   77 (239)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhc-cC--C-CcHHHHHHHHHHHHHHHHHH
Confidence            457788999998888888888654420  00001100  11134443333331 22  4 37999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHhcC
Q 017347          125 RGNLLKALGTQVAEPLRAMVLG  146 (373)
Q Consensus       125 ~~~~~~~~~~~fl~PL~~~~~~  146 (373)
                      +..+...+...+..||+.|+..
T Consensus        78 H~~la~~L~~ev~~~l~~~~~~   99 (239)
T cd07658          78 HRNLGSALTEEAIKPLRQVLDE   99 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999974

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa

Probab=96.36  E-value=0.64  Score=42.47  Aligned_cols=166  Identities=13%  Similarity=0.142  Sum_probs=105.3

Q ss_pred             CCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHH
Q 017347           80 KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY  159 (373)
Q Consensus        80 ~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y  159 (373)
                      -|.|+  -||+.+...|....  +-  =|+-....|.+...-++.+.....- -..|..-+..|... -++|..+=.++|
T Consensus        36 sq~e~--~LG~fl~e~~~~d~--t~--ag~~m~~t~KaL~~sg~qrl~~r~p-l~~f~~~v~Tf~~r-ai~Dtl~Ti~~~  107 (204)
T cd07661          36 SQEEN--VLGKFLKEQGKIDK--TT--AGKMMAATGKALSFSSQQRLALRVP-LLRLYQEVETFRER-AIADTLQTIQRM  107 (204)
T ss_pred             HHHHH--HHHHHHHHHhccCh--hh--hccHHHHHHHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            34666  69999999998765  21  1556666666666655555544111 22556666667665 666666556678


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh-ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347          160 DRMRQEAEAQAIEVSKRQAKV-RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE  238 (373)
Q Consensus       160 ~~~r~~le~rrld~k~r~~K~-~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve  238 (373)
                      +..|-+.++-|++++.-.... ++..   -.-.+++.++..+...|+.++.|...+..-+--.++..=.+.-..|..|-.
T Consensus       108 E~aR~EY~a~~~~mk~~s~eldP~~~---~~l~kfr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqn  184 (204)
T cd07661         108 EKCRTEYRAALLWMKSVSQELDPDTY---KQLEKFRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQN  184 (204)
T ss_pred             HHhhcccHHHHHHHHHHhhhcCCccc---hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998884432211 1111   112356767776777777766666667655533333332334458888999


Q ss_pred             HHHHHHHHHHHHHHHhHH
Q 017347          239 AERTYHQRVLQILDQLEG  256 (373)
Q Consensus       239 Aql~Yh~q~~~iL~~L~~  256 (373)
                      +.+.|.......|..+..
T Consensus       185 al~~y~~kt~~~~~~i~~  202 (204)
T cd07661         185 TLLQFWEKTSRTMATIHE  202 (204)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999988887765

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate

>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6

Probab=96.35  E-value=0.9  Score=42.41  Aligned_cols=94  Identities=16%  Similarity=0.172  Sum_probs=62.4

Q ss_pred             CCccccchH-Hhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHH
Q 017347           34 SDNVVTDEA-ELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA  111 (373)
Q Consensus        34 ~~~~~~~e~-e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al  111 (373)
                      +|++..+|. .+. .|.+|=+++..++..-.--|.+.      .        ..-.+|.++..-|+-    .++.++++|
T Consensus        22 ~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela------~--------~~~~fs~al~~L~~~----E~t~L~~~l   83 (219)
T cd07621          22 VDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVA------D--------SYIKISAALTQLATS----EPTPLDKFL   83 (219)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHhhcc----ccchHHHHH
Confidence            556665554 222 56666666666655322222221      0        111455555555542    336899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       112 ~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      .++|+...+|.+........---.|-++|+.|+.
T Consensus        84 s~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r  117 (219)
T cd07621          84 LKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMR  117 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence            9999999999999998888888899999999886

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain

>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]

Probab=96.28  E-value=0.0022  Score=63.13  Aligned_cols=56  Identities=30%  Similarity=0.445  Sum_probs=50.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~  362 (373)
                      ..=++++.|.+..++||-|..||.|.|-...++-|++|.+  .|+.|+||+.|+-.++
T Consensus       263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd  320 (482)
T KOG3775|consen  263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD  320 (482)
T ss_pred             hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence            3458899999999999999999999999988999999987  9999999999987764

>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1

Probab=96.25  E-value=0.99  Score=41.91  Aligned_cols=195  Identities=12%  Similarity=0.159  Sum_probs=112.2

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCC-CCCChHHHHHHHHHHHHHHHHHH
Q 017347           46 QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC-TSGNTLSKAALSYGRARAQMEKE  124 (373)
Q Consensus        46 ~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~-~~~s~~g~al~~~g~a~~~l~~~  124 (373)
                      -+.+|.+|..-   .|+|.|.+--.+.+           ++.-.+++.+-|+---. ++.-.+|.+|+.+.++++++...
T Consensus        18 fnP~lrnLv~l---Gk~Y~KA~~a~~~A-----------~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~   83 (226)
T cd07645          18 FNPGLRNLINL---GKNYEKAVNAMVLA-----------GKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDS   83 (226)
T ss_pred             cCHHHHHHHHH---hhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            46788888865   45688776333332           22345555555553221 13346999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH---HHH-HHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q 017347          125 RGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR---MRQ-EAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKL  200 (373)
Q Consensus       125 ~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~---~r~-~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~  200 (373)
                      .+.....+..-+|.||..-++- |++-+..--++|+.   .+. .||...-|+|+-+.|+. ..+++.   +-..=|.++
T Consensus        84 le~~lK~Fh~Ell~~LE~k~el-D~kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsq-g~kn~~---kye~Ke~~~  158 (226)
T cd07645          84 LEENFKKFHREIIAELERKTDL-DVKYMTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQ-GRRNAS---KYEHKENEY  158 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCch---hhHHHHHHH
Confidence            9999999999999999999986 88888833344742   222 36777778855444432 122331   111111111


Q ss_pred             HHHHH----HH-HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          201 HDLKS----NM-AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       201 ~e~~e----~~-~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      -+..+    .| .........+|+.- --.=.+.+..-.+|......||.+...+|.+=-..|..
T Consensus       159 ~e~~~~~q~el~~f~~~~~k~AL~EE-rRRycFlvdkhC~~~~~~~~yh~k~~~lL~~klp~Wqe  222 (226)
T cd07645         159 LETVTSRQSDIQKFIADGCREALLEE-KRRFCFLVDKHCSFSNHIHYFHQQAAELLNSKLPVWQE  222 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence            11111    11 11111222333221 11112334455566667778888888888765555543

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=96.20  E-value=1.1  Score=42.13  Aligned_cols=92  Identities=21%  Similarity=0.177  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhh-cc-cccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGV-EG-YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~-e~-~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~  124 (373)
                      +.||+-|+.++.-++...+.|.... |- -+.-.|-.  ...+|+. ...-|.|.|     .|..++..+-.....|+..
T Consensus         4 ~~Gf~vl~~~~k~g~~~~~el~~fl~ERa~IEe~Yak--~L~klak-~~~~~~e~G-----tl~~sw~~~~~e~E~~a~~   75 (233)
T cd07649           4 VTGFEILLQKQLKGKQMQKEMAEFIRERIKIEEEYAK--NLSKLSQ-SSLAAQEEG-----TLGEAWAQVKKSLADEAEV   75 (233)
T ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-hhcCCCCCC-----hHHHHHHHHHHHHHHHHHH
Confidence            4567777777776666666664332 10 00000100  1113443 222344555     7999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHhcC
Q 017347          125 RGNLLKALGTQVAEPLRAMVLG  146 (373)
Q Consensus       125 ~~~~~~~~~~~fl~PL~~~~~~  146 (373)
                      ...|...+...+..||+.|..+
T Consensus        76 H~~la~~L~~ev~~~l~~f~~~   97 (233)
T cd07649          76 HLKFSSKLQSEVEKPLLNFREN   97 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999975

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins

Probab=96.18  E-value=1.2  Score=42.31  Aligned_cols=193  Identities=10%  Similarity=0.128  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~  124 (373)
                      |.||+-|+.+++-+..+.+.|..-.-    - --.+|  .+..|..-..++..-.   ....|..++..+=....+|+..
T Consensus         4 ~~G~~~L~~r~k~g~~~~~el~~f~k----e-Ra~IEe~Yak~L~kLakk~~~~~---~~gt~~~~w~~i~~~~e~~a~~   75 (261)
T cd07648           4 NNGFDVLYHNMKHGQIAVKELADFLR----E-RATIEETYSKALNKLAKQASNSS---QLGTFAPLWLVLRVSTEKLSEL   75 (261)
T ss_pred             CcChHHHHHHHHhHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHhcCCC---CcCcHHHHHHHHHHHHHHHHHH
Confidence            56778888888877776666643321    0 00011  1222333333332211   2236888888888889999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHH----------HHHHHHHHHHHHHH-HH--HhhhhccCCCC----
Q 017347          125 RGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRY----------DRMRQEAEAQAIEV-SK--RQAKVRETPGN----  186 (373)
Q Consensus       125 ~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y----------~~~r~~le~rrld~-k~--r~~K~~e~~~~----  186 (373)
                      ...|...+. .++.||..+++  .++.-+ ..+...          ....+.++.-+-.| ..  ...+.+.....    
T Consensus        76 H~~l~~~L~-~~~~~l~~~~~--~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~  152 (261)
T cd07648          76 HLQLVQKLQ-ELIKDVQKYGE--EQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENASPKEI  152 (261)
T ss_pred             HHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence            999999995 68899998875  333322 221111          01111122222222 00  00001111000    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQI  250 (373)
Q Consensus       187 ~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~i  250 (373)
                      ..+..++..|...|...-+.+......-...|..+-..-|.+--.+|..|-+....|+.....+
T Consensus       153 eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~  216 (261)
T cd07648         153 EKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSEN  216 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0122344455555555555566666666677765544444444446666666666666655443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=96.18  E-value=0.34  Score=50.75  Aligned_cols=21  Identities=10%  Similarity=0.199  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 017347          230 LQRLIAMVEAERTYHQRVLQI  250 (373)
Q Consensus       230 l~~L~~~veAql~Yh~q~~~i  250 (373)
                      +.-|.+|+.....|+....++
T Consensus       196 VEpllafl~slf~f~h~g~el  216 (812)
T KOG1451|consen  196 VEPLLAFLYSLFSFFHVGSEL  216 (812)
T ss_pred             HHHHHHHHHHHHHHhhhhHHH
Confidence            555666666666655544443

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=96.05  E-value=0.00097  Score=60.95  Aligned_cols=52  Identities=21%  Similarity=0.364  Sum_probs=46.5

Q ss_pred             EEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeCCeeeEecCCCeee
Q 017347          309 GEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       309 ~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      +.++|+|.+...+||+|.+|+.|.+++.. +-+|...+..|..|++|.||.+.
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~   55 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM   55 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence            56789999999999999999999988875 45799999999999999999854

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=95.96  E-value=0.11  Score=48.85  Aligned_cols=137  Identities=14%  Similarity=0.144  Sum_probs=91.8

Q ss_pred             HHHHHHhcCCCC-CCCCccccchHHhh-hhHHHHHHHHHhhhhhhHHH---------HHhhh-----hcccccC---CCC
Q 017347           20 QAVFKQFGGGGY-GGSDNVVTDEAELH-QHQRLERLYISTRAGKHFQR---------DIVRG-----VEGYIVT---GSK   80 (373)
Q Consensus        20 q~~~~~~~~~~~-~~~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~---------~i~r~-----~e~~~~~---~~~   80 (373)
                      |.+-.++||+.- .-+|+|...|.+|. +|...|+|+.+|..   |..         .+.+.     -+.+..+   |..
T Consensus         1 Q~~~Ek~G~aEkTe~d~df~~le~~~d~~~~~~e~i~~~~~~---~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~   77 (229)
T cd07594           1 QFTEEKLGTAEKTEYDAHFENLLQRADKTKVWTEKILKQTEA---VLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQA   77 (229)
T ss_pred             CcchhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHH
Confidence            456778997742 23899999999999 99999999999876   432         33222     2343322   233


Q ss_pred             CCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHH
Q 017347           81 QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY  159 (373)
Q Consensus        81 ~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y  159 (373)
                      .++.|+-||.+ ..||.-+-     .||.|..++|+++..... +..+|+.-+..-.-.-|+....  .-|....++-.|
T Consensus        78 M~~~g~~lg~~-S~~g~aL~-----~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k--~RKkLe~rRLd~  149 (229)
T cd07594          78 MIEAGNDFGPG-TAYGSALI-----KVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISK--ERKLLENKRLDL  149 (229)
T ss_pred             HHHHHhhCCCC-CchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            45555555554 34555554     678999999999988765 7999998887655446665543  344444566678


Q ss_pred             HHHHHHHH
Q 017347          160 DRMRQEAE  167 (373)
Q Consensus       160 ~~~r~~le  167 (373)
                      |..|..+.
T Consensus       150 D~~k~r~~  157 (229)
T cd07594         150 DACKTRVK  157 (229)
T ss_pred             HHHHHHHh
Confidence            88777775

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=95.84  E-value=0.014  Score=63.68  Aligned_cols=56  Identities=25%  Similarity=0.443  Sum_probs=47.4

Q ss_pred             eEEEEeccCCC------CCCCCccCCCCCEEEEEeec-CCCeEEEEe-CCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPYQA------ESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a------~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~-~g~~G~fP~~Yve~l~  362 (373)
                      ..|.+.|+|.+      ..+.||.+.+|++|.|.... .+|+++|++ .|+.|++|+|||+.+.
T Consensus       448 q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~  511 (1335)
T KOG3632|consen  448 QPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVT  511 (1335)
T ss_pred             ceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEec
Confidence            45788888776      24578999999999998875 568999999 9999999999999874

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases

Probab=95.77  E-value=1.8  Score=40.87  Aligned_cols=49  Identities=18%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH
Q 017347          103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (373)
Q Consensus       103 ~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~  153 (373)
                      ++|+...+...+=.--..++..+..+..++..++++||..++.  +++.++
T Consensus        59 ~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~--~~~~~r  107 (237)
T cd07657          59 QGSPISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIK--DKRKAK  107 (237)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHH
Confidence            4556666777777777888899999999999999999998885  555554

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

Probab=95.72  E-value=2  Score=40.99  Aligned_cols=39  Identities=15%  Similarity=0.084  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 017347          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV  144 (373)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~  144 (373)
                      .+..++..+=.....++..+..+...+...+..||..+.
T Consensus        61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~   99 (258)
T cd07655          61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQ   99 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577888888888899999999999999999999999886

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce

>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]

Probab=95.68  E-value=0.088  Score=59.98  Aligned_cols=60  Identities=27%  Similarity=0.415  Sum_probs=54.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      +.-++.++|+|...++-+.+.++||++++.....-+||..+++..-|++|+.||+.+.|-
T Consensus       967 g~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  967 GKECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence            345678899999999999999999999999888999999999999999999999998765

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=95.63  E-value=2.2  Score=40.75  Aligned_cols=198  Identities=12%  Similarity=0.088  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC---CCC-CChHHHHHHHHHHHHHHHHH
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTS-GNTLSKAALSYGRARAQMEK  123 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~---~~~-~s~~g~al~~~g~a~~~l~~  123 (373)
                      .+|+.|..-+..+..|.++|.+-.-   ....--.|.+.+|-.-+-+|+.==.   ..| .|+ ..++..+=.....++.
T Consensus         5 Dqf~~~~k~~~~Gi~~l~~~~~F~k---eRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~-~~s~~~~L~~~~~~a~   80 (252)
T cd07675           5 DQFDNLDKHTQWGIDFLERYAKFVK---ERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTS-CLSFYNILNELNDYAG   80 (252)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccccCCCCCCccccH-HHHHHHHHHHHHHHHH
Confidence            3455555555555555555532210   0000112334455555555533111   111 222 2334444455777888


Q ss_pred             HHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q 017347          124 ERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD  202 (373)
Q Consensus       124 ~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e  202 (373)
                      .++.+...+..+++.||..+..  +|+..| ..-....++-+.+++.--++.+-+.+.-      .+|.+.+.|..+++.
T Consensus        81 q~e~~a~~l~~~v~~~l~~~~~--~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~------~acke~E~A~~k~~k  152 (252)
T cd07675          81 QREVVAEEMGHRVYGELMRYSH--DLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFE------RECREAEKAQQSYER  152 (252)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHh
Confidence            9999999999999999999985  788766 2212223344444433333322111211      124455555544443


Q ss_pred             HHHH-------HHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHH
Q 017347          203 LKSN-------MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT-YHQRVLQILDQLEGEM  258 (373)
Q Consensus       203 ~~e~-------~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~-Yh~q~~~iL~~L~~eL  258 (373)
                      +..+       ..++..-+.......+ +...-++..|..+..-+.. ||.-.-++++.|+..=
T Consensus       153 a~~d~~~tk~~~eK~k~~~~~~~q~~e-~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~le  215 (252)
T cd07675         153 LDNDTNATKSDVEKAKQQLNLRTHMAD-ESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMD  215 (252)
T ss_pred             cccCcccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence            2211       1111111111111111 0111125566666666666 7777777777777743

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=94.93  E-value=0.45  Score=44.55  Aligned_cols=122  Identities=15%  Similarity=0.278  Sum_probs=80.5

Q ss_pred             CCccccchHHhh-hhHHHHHHHHHhhhhhhHHH-------------HHhh---h--hcccccC----CCCCCchhhHHHH
Q 017347           34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQR-------------DIVR---G--VEGYIVT----GSKQVEIGTKLSE   90 (373)
Q Consensus        34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~-------------~i~r---~--~e~~~~~----~~~~~e~~~~Lg~   90 (373)
                      +|+|...|.+|. +|..+|+|+.+|..   |..             +|.|   .  ..++..+    |...++.|+-||.
T Consensus         6 d~~f~~le~~~d~t~~~~~~l~~~t~~---~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~   82 (223)
T cd07615           6 DDDFQEMERKIDVTNKVVAELLSKTTE---YLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGE   82 (223)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCC
Confidence            788999999999 99999999999887   544             3332   2  2233332    2344666555555


Q ss_pred             HHHHhhccCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347           91 DSRKYGSDNTCTSGNTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA  166 (373)
Q Consensus        91 ~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l  166 (373)
                      +.. ||.-+.     .||.|..++|+++..... +..+|+.-+..-...-|+....  .-|-...++-.||..++.+
T Consensus        83 dS~-~G~aL~-----~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k--~RKkLe~rRLd~D~~K~r~  151 (223)
T cd07615          83 EST-FGNALL-----DVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGH--HLKKLEGRRLDFDYKKKRQ  151 (223)
T ss_pred             CCh-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
Confidence            332 454444     578999999999887655 8899998888655566665442  3333335555677766555

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2

Probab=94.83  E-value=3.2  Score=38.21  Aligned_cols=188  Identities=13%  Similarity=0.122  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCC-hHHHHHHHHHHHHHHHHHHHH
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGN-TLSKAALSYGRARAQMEKERG  126 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s-~~g~al~~~g~a~~~l~~~~~  126 (373)
                      .+|+||..-   +|+|-|.+--.+.           .++.-.+.+.+-|+---.++.| .+|.+|+.+++++++|-..-+
T Consensus        20 P~lrnlv~l---Gk~Y~kA~~a~t~-----------aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~le   85 (215)
T cd07644          20 PALENLVYL---GNNYLRAFHALSE-----------AAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSADLE   85 (215)
T ss_pred             hHHHHHHHH---hHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            455566543   4446665533322           2334556666767644333455 599999999999999999888


Q ss_pred             HHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH---HHHHH-HHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q 017347          127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD---RMRQE-AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD  202 (373)
Q Consensus       127 ~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~---~~r~~-le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e  202 (373)
                      .....+-.-.|.||..-++- |.+=+..--|+|+   |.|.. ||.---++++.+.|..   +++. +  ...--+.+  
T Consensus        86 ~~lk~FH~ell~~LEkk~el-D~kyi~~s~KkYq~E~r~k~dsleK~~selkk~rrk~q---kn~~-e--~kE~~~~l--  156 (215)
T cd07644          86 VVFQTFHVDLLQHMDKNTKL-DMQFIEDSRRVYELEYRHRAANLEKCMSELWRMERQRD---RNVR-E--MKENVNRL--  156 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc---CCch-h--hHHHHHHH--
Confidence            88888889999999988886 8777773334473   22222 3443344433222211   2221 1  11000001  


Q ss_pred             HHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017347          203 LKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML  259 (373)
Q Consensus       203 ~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~  259 (373)
                      ..+.-..+......+|+.-. -+=.|.+....++..--..||.+...+|.+--..|.
T Consensus       157 q~~~~~f~~~~~k~Al~eEr-RRy~Flvek~c~~~k~~~~yh~ka~~ll~~kl~~Wq  212 (215)
T cd07644         157 RQSMQAFLKESQRAAELEEK-RRYRFLAEKHYLLNNTFLQFQSRARGMLQTRVPSWK  212 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc
Confidence            01111111222233332211 111334555566666778889888888776555554

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=94.52  E-value=1.1  Score=42.04  Aligned_cols=100  Identities=13%  Similarity=0.204  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHh-hcc----CCCCCCChHHHHHHH---------
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKY-GSD----NTCTSGNTLSKAALS---------  113 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~-g~e----~~~~~~s~~g~al~~---------  113 (373)
                      .+|+.|-..+++++.|+++|.+.++.+++| +|..-.=..+...|-+- |..    .+ .+...+|.++++         
T Consensus         7 ~df~~le~~~d~~~~~~~~l~~~~~~~lqp-NP~~r~~~~~~~~~~K~~g~~~~~~~p-~~~~~Lg~~M~~~g~elg~~S   84 (223)
T cd07592           7 DEFLEMERKTDATSKLVEDLIPKTKEYLQP-NPAARAKLAMQNTYSKIRGQAKSTKYP-QPEGLLGEVMLKYGRELGEDS   84 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchHhHHHHHHHHHHHHhccCcccCCC-CcccHHHHHHHHHHhhcCCCC
Confidence            478899999999999999999999999997 77754311222333333 332    22 123578999887         


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchH
Q 017347          114 -YGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDD  151 (373)
Q Consensus       114 -~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~  151 (373)
                       ||.|...++.+...+...-...-..--..|+.  ||..
T Consensus        85 ~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~--pL~~  121 (223)
T cd07592          85 NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLD--PLQQ  121 (223)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence             56677888888777665444443344445664  5544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins

Probab=94.30  E-value=4.3  Score=37.36  Aligned_cols=146  Identities=10%  Similarity=0.078  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcC-CCchHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNT---CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDARHLAQRYDRM  162 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~---~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~-~~lk~~~~~k~~y~~~  162 (373)
                      ++|..+...|.-|.   .+..+.+.+||...|+++..|+++..+....=-..|.+-|..|+-- +-+++|-+        
T Consensus        44 k~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~gll~~~pdi~~--------  115 (199)
T cd07626          44 KIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYKGLLSTFPDIIG--------  115 (199)
T ss_pred             HHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHhHHHhhhHHHH--------
Confidence            57777777775444   1244679999999999999999999988887777777777766520 02344431        


Q ss_pred             HHHHHHHHHHH-HHHhh-hhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017347          163 RQEAEAQAIEV-SKRQA-KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE  240 (373)
Q Consensus       163 r~~le~rrld~-k~r~~-K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAq  240 (373)
                           .++-.+ |+|-. |..+.++.  ...+++..+.+++.....       ....|.-.+.+.-.=+-..+..|++.|
T Consensus       116 -----~~k~al~K~kE~~r~~~egk~--~~~e~~ev~~r~d~IS~~-------~~aE~~~F~~eRv~Dfk~~m~~yLe~q  181 (199)
T cd07626         116 -----VHKGAVQKVKECERLVDEGKM--SSAELEEVKRRTDVISYA-------LLAEINHFHRERVRDFKSMMRNYLQQQ  181 (199)
T ss_pred             -----HHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 111112 11111 11111111  012444455556555444       555554444333111133677888899


Q ss_pred             HHHHHHHHHHHHHh
Q 017347          241 RTYHQRVLQILDQL  254 (373)
Q Consensus       241 l~Yh~q~~~iL~~L  254 (373)
                      ..||++...-|.+.
T Consensus       182 I~fyqqI~~kl~~a  195 (199)
T cd07626         182 IEFYQKIAAKLEEA  195 (199)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998887766654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for

>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

Probab=94.12  E-value=5.4  Score=37.79  Aligned_cols=193  Identities=16%  Similarity=0.159  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCC--------CCCChHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC--------TSGNTLSKAALSYGRAR  118 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~--------~~~s~~g~al~~~g~a~  118 (373)
                      ...+-+|+.+......-...++++.++.-.      +.+ .+|..+...|+.-+.        ..-..+.++|..+|.-.
T Consensus        28 r~~I~~l~~~~~~l~~l~er~~kR~~~~A~------d~~-~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~~  100 (246)
T cd07597          28 RERIRRLLESWTKLRVLAERYEKRSQQQAA------DRA-EFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKHF  100 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-HHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHHH
Confidence            445555555555555555666666665321      111 456666666654431        11135688999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhccC-CCCcch
Q 017347          119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD--------RMRQEAEAQAIEVSKRQAKVRET-PGNPDL  189 (373)
Q Consensus       119 ~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~--------~~r~~le~rrld~k~r~~K~~e~-~~~~~~  189 (373)
                      ..+...-.+......+.|++||+.|++  =+--.+.+-.||+        ++.+.++..    ++|..+.+-. ...+  
T Consensus       101 ~~~s~~~~~~a~~~~~~vlE~Lk~~~d--~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~----~~kl~~l~~~~~~~~--  172 (246)
T cd07597         101 QLLSDLSEDEARAEEDGVLEKLKLQLD--LLVSLRDLFERHEKLSLNNIQRLLKRIELN----KKKLESLRAKPDVKG--  172 (246)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHhcccccHHHHHHHHHHH----HHHHHHhhcCCCCch--
Confidence            999999999999999999999999984  2222334433333        223322221    2221111111 1111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hhHHHH--HHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347          190 ALKLDAAEVKLHDLKSNMAI-LGKEAA--AAMA----AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG  256 (373)
Q Consensus       190 ~~eL~~ae~K~~e~~e~~~~-L~kea~--~~m~----~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~  256 (373)
                       .++...++.....++.... +++...  .-|.    -+...++ +....|..|+..+..||.....++..|..
T Consensus       173 -~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W~~L~~  244 (246)
T cd07597         173 -AEVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVWERLVP  244 (246)
T ss_pred             -hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             2344444445444444222 122111  1111    1333332 45779999999999999999888887764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=94.10  E-value=5.6  Score=37.92  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH
Q 017347          116 RARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (373)
Q Consensus       116 ~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~  153 (373)
                      .....++..++.+...+...+++||..++.  +++..+
T Consensus        74 ~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~--~~k~~r  109 (253)
T cd07676          74 NEMNDYAGQHEVISENLASQIIVELTRYVQ--ELKQER  109 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            334488999999999999999999998885  455544

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>smart00721 BAR BAR domain

Probab=94.06  E-value=4.8  Score=37.03  Aligned_cols=94  Identities=11%  Similarity=0.142  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 017347          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG  185 (373)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~  185 (373)
                      .+|.++..++++...+...+..++..+...+..-+.....  -.+.-.++.-.||+.|.++++-+    ++..+..+. +
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~kk~~~~~lDyD~~~~kl~~~~----~~~~~~~~~-k  171 (239)
T smart00721       99 KLGEALKKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKK--ARKKLERKLLDYDSARHKLKKAK----KSKEKKKDE-K  171 (239)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHH--HHHHHHhHHHHHHHHHHHHHHHH----HhccCChhh-h
Confidence            4667777788888777777888887777666555554442  11111145556677666665321    111111111 4


Q ss_pred             CcchHHHHHHHHHHHHHHHHH
Q 017347          186 NPDLALKLDAAEVKLHDLKSN  206 (373)
Q Consensus       186 ~~~~~~eL~~ae~K~~e~~e~  206 (373)
                      .+.++.+++.|+.+|+++.+.
T Consensus       172 l~~~e~el~~ak~~fe~~~~~  192 (239)
T smart00721      172 LAKAEEELRKAKQEFEESNAQ  192 (239)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH
Confidence            556688999999999997655

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=93.85  E-value=5.4  Score=37.17  Aligned_cols=169  Identities=21%  Similarity=0.244  Sum_probs=97.1

Q ss_pred             HHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC-CCCCChHHHHHHH----------HHHH
Q 017347           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT-CTSGNTLSKAALS----------YGRA  117 (373)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~-~~~~s~~g~al~~----------~g~a  117 (373)
                      .|..|-..++.++....+|.+.++.|+..-.+..+           -|.+-. ..|...+|.+++.          ||.|
T Consensus         8 df~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~-----------~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~a   76 (215)
T cd07593           8 EFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKP-----------LLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSC   76 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----------cccccccCChHHHHHHHHHHHHhhCCCCChHHHH
Confidence            45566777788888999999999998752112211           012111 1244467887764          7788


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHH
Q 017347          118 RAQMEKERGNLLKALGTQVAEPLR-AMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA  196 (373)
Q Consensus       118 ~~~l~~~~~~~~~~~~~~fl~PL~-~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~a  196 (373)
                      ...+|.+...+.. +...|+.++. +|+.  +|....  ..     -+++...|       .|..      .....+-.+
T Consensus        77 L~~~G~a~~kia~-~q~~f~~~~~~~~l~--pL~~~l--~~-----~k~i~k~R-------KkLe------~rRLdyD~~  133 (215)
T cd07593          77 LSKLGRAHCKIGT-LQEEFADRLSDTFLA--NIERSL--AE-----MKEYHSAR-------KKLE------SRRLAYDAA  133 (215)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHH--HH-----HHHHHHHH-------HHHH------HHHHHHHHH
Confidence            9999999998877 6899999998 4553  444322  11     11222111       1111      012355556


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          197 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD  252 (373)
Q Consensus       197 e~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~  252 (373)
                      .+++..++..-..+..|...+....+...+ .+...+..+++.+.++..+....++
T Consensus       134 ksk~~kak~~~~~~eeElr~Ae~kfees~E-~a~~~M~~i~~~e~e~~~~L~~lv~  188 (215)
T cd07593         134 LTKSQKAKKEDSRLEEELRRAKAKYEESSE-DVEARMVAIKESEADQYRDLTDLLD  188 (215)
T ss_pred             HHHHHhccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHH
Confidence            655555543323344445544444433332 2466888888877777766666543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=93.71  E-value=0.1  Score=41.36  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             CCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeec
Q 017347          319 SDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  361 (373)
Q Consensus       319 ~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l  361 (373)
                      ...+|.+.+|+.+.|+...+.+-|.++. .|+.|+||.+++-..
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~   72 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL   72 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence            4578999999999999999999899999 999999999988543

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=93.46  E-value=0.15  Score=36.26  Aligned_cols=36  Identities=31%  Similarity=0.668  Sum_probs=29.3

Q ss_pred             cCCCCCEEEEEeecCCC-eEEE-EeCCeeeEecCCCee
Q 017347          324 TLSVGDYVVVRKVTNNG-WAEG-ECKGKAGWFPFGYIE  359 (373)
Q Consensus       324 sl~~gd~I~V~~~~~~g-W~~G-~~~g~~G~fP~~Yve  359 (373)
                      .+..|+.|.|+.....+ |++. ..+|..||++..||+
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            46778999998887655 9999 559999999999984

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=93.39  E-value=0.067  Score=57.28  Aligned_cols=48  Identities=25%  Similarity=0.242  Sum_probs=39.7

Q ss_pred             eccCCCCCCCCccCCCCCEEEEEeecCC-CeEEEEe--CCeeeEecCCCee
Q 017347          312 VHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC--KGKAGWFPFGYIE  359 (373)
Q Consensus       312 lydf~a~~~~ELsl~~gd~I~V~~~~~~-gW~~G~~--~g~~G~fP~~Yve  359 (373)
                      ..+|+...++.|-|..||.|+|++.... -||.|..  +++.|.||.+-|.
T Consensus       380 ~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  380 RETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            3345567788999999999999998654 5999965  8899999998776

>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes

Probab=92.70  E-value=7  Score=34.82  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=38.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      +.|..+...+......++..+..|...+...+.+|++.+..
T Consensus        53 ~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~   93 (191)
T cd07610          53 TSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKE   93 (191)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999885

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.

>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3

Probab=92.57  E-value=4.5  Score=37.66  Aligned_cols=64  Identities=14%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             CCChHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 017347          103 SGNTLS-KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE  167 (373)
Q Consensus       103 ~~s~~g-~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le  167 (373)
                      .|..|- .||.+||+..+.+-...-+........+++||+.|+.+ +++-.++.++.|++...+++
T Consensus        56 idqdYT~~al~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~-~i~~~Ke~rk~Fd~~q~kyD  120 (214)
T cd07609          56 IDQDYTPLALKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKS-DIRPYKELRKNFEYYQRKYD  120 (214)
T ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            344564 69999999999999777777776678999999999997 87777766666777666555

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=92.19  E-value=10  Score=35.59  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE  124 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~  124 (373)
                      |.|++.|+.+++-+..+.+.|..-.    .. --.+|  .+..|..-..+++.-.   ....|..++..+=.....|+..
T Consensus         4 ~~G~~~l~~r~~~g~~~~~el~~f~----ke-Ra~iE~eYak~L~kLak~~~~~~---e~gsl~~aw~~i~~e~e~~a~~   75 (239)
T cd07647           4 TTGFDTLLQRLKEGKKMCKELEDFL----KQ-RAKAEEDYGKALLKLSKSAGPGD---EIGTLKSSWDSLRKETENVANA   75 (239)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhccCCCC---ccchHHHHHHHHHHHHHHHHHH
Confidence            5677888888887777777664321    10 01122  2333444444443211   2236888999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHhc
Q 017347          125 RGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       125 ~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      +..|...+... +..|..|..
T Consensus        76 H~~la~~L~~~-v~~l~~~~~   95 (239)
T cd07647          76 HIQLAQSLREE-AEKLEEFRE   95 (239)
T ss_pred             HHHHHHHHHHH-HHHHHHHHH
Confidence            99999999997 466777764

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase

Probab=91.72  E-value=12  Score=35.35  Aligned_cols=109  Identities=18%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             hhhHHHHHHHHhhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347           84 IGTKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR  161 (373)
Q Consensus        84 ~~~~Lg~~m~~~g~e~~--~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~  161 (373)
                      -+..|..-+.+|..-..  ....|....+...+=.--..++..+..+...+.+..+..|..++.  +   .+.+++.|+.
T Consensus        38 YA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~--~---~~~~~k~~~~  112 (234)
T cd07686          38 YASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIK--D---KQQVKKSYIG  112 (234)
T ss_pred             HHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H---HHHHHHHHHH
Confidence            34455555555532111  002234445666666667788889999999999999999988875  2   3456677888


Q ss_pred             HHHHHHHHHHH--H---HHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q 017347          162 MRQEAEAQAIE--V---SKRQAKVRETPGNPDLALKLDAAEVKLHDL  203 (373)
Q Consensus       162 ~r~~le~rrld--~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~  203 (373)
                      ..++|+..+.+  +   .+-+.+..      .+|.+...|..|++++
T Consensus       113 ~~~kl~~e~~~~~~~~l~K~K~~Y~------~~~~~~e~ar~K~~~a  153 (234)
T cd07686         113 VHQQIEAEMYKVTKTELEKLKCSYR------QLTKEVNSAKEKYKDA  153 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHh
Confidence            87888776643  2   33333333      2355666666666554

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran

>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

Probab=91.69  E-value=13  Score=35.65  Aligned_cols=152  Identities=14%  Similarity=0.167  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---------HhcCCCchHHHHHHHHH-------HHHHHHHHHH
Q 017347          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRA---------MVLGAPLDDARHLAQRY-------DRMRQEAEAQ  169 (373)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~---------~~~~~~lk~~~~~k~~y-------~~~r~~le~r  169 (373)
                      .+..++.-|-.....|+.....+...+..-.++|++.         |+.  .+|+.+.....+       -++.++++..
T Consensus        61 TL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~~QKe~~hk~~~~--g~ke~K~~e~~f~kaqK~w~k~~kk~~~s  138 (258)
T cd07681          61 TLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRAWQKEAFHKQMIG--GFRESKEAEEGFRKAQKPWVKKLKEVESS  138 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh--hhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            6778888888888899999999999999999999977         542  233322111111       1223334444


Q ss_pred             HHHH--HHHhhhh---------ccCCCCcc-----------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 017347          170 AIEV--SKRQAKV---------RETPGNPD-----------LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR  227 (373)
Q Consensus       170 rld~--k~r~~K~---------~e~~~~~~-----------~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~  227 (373)
                      |-.|  +.+..+.         .+...+++           ...++..+..+|+.+-+.+......-...|..+-..-|.
T Consensus       139 Kk~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~  218 (258)
T cd07681         139 KKGYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQE  218 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4444  1111110         00011111           012334445556665555555556666667666555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHH
Q 017347          228 LTLQRLIAMVEAERTYHQRVLQI-----LDQLEGEMLS  260 (373)
Q Consensus       228 ~~l~~L~~~veAql~Yh~q~~~i-----L~~L~~eL~s  260 (373)
                      +--.+|.-|-++.+.||+.+ .+     +..++.+|..
T Consensus       219 ~EeeRi~flK~~L~~~~~~l-~~~~~~~~~~~~~~l~~  255 (258)
T cd07681         219 AERKRLCFFKEMLLDLHQHL-DLSSSDSFHALYRDLHQ  255 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hhhccccHHHHHHHHHh
Confidence            45668888899999999855 44     4455555543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to

>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.56  E-value=0.091  Score=51.47  Aligned_cols=35  Identities=20%  Similarity=0.486  Sum_probs=31.3

Q ss_pred             CCccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecC
Q 017347          321 VELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPF  355 (373)
Q Consensus       321 ~ELsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~  355 (373)
                      ..++|...|.|.|-++-+++||.|+.   ++..||+|+
T Consensus        80 ~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   80 HAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             ceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            45789999999999999999999987   678999997

>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

Probab=91.38  E-value=13  Score=35.16  Aligned_cols=89  Identities=18%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHhh--ccCCCCCCChHHHHHHHHHHHHHHH
Q 017347           46 QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYG--SDNTCTSGNTLSKAALSYGRARAQM  121 (373)
Q Consensus        46 ~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~g--~e~~~~~~s~~g~al~~~g~a~~~l  121 (373)
                      .|.|++.|+.+++-++...+.+..-.    .. --++|  .+..|..-..+++  .|.|     .+..++..+-.-...+
T Consensus         3 ~~~G~~~l~~r~~~g~~~c~el~~f~----ke-Ra~iE~~Yak~L~kl~kk~~~~~e~g-----Tl~~a~~~~~~e~e~~   72 (242)
T cd07671           3 LNTGYEILLQRLLDGRKMCKDVEELL----KQ-RAQAEERYGKELVQIARKAGGQTEIN-----TLKASFDQLKQQIENI   72 (242)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhhccCcccch-----HHHHHHHHHHHHHHHH
Confidence            46678888888877766666664322    10 01122  2222333333333  2333     6778898888888899


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          122 EKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       122 ~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      +..+..+...+.+. +.||..|.+
T Consensus        73 a~~H~~ia~~L~~~-~~~l~~f~~   95 (242)
T cd07671          73 GNSHIQLAGMLREE-LKSLEEFRE   95 (242)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHH
Confidence            99999999999998 678888875

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=90.55  E-value=0.4  Score=34.85  Aligned_cols=35  Identities=34%  Similarity=0.485  Sum_probs=28.8

Q ss_pred             cCCCCCEEEEEeecCCCeEEEEeC-CeeeEecCCCe
Q 017347          324 TLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYI  358 (373)
Q Consensus       324 sl~~gd~I~V~~~~~~gW~~G~~~-g~~G~fP~~Yv  358 (373)
                      .+..|+.+.|+...+.+|+..... |..||+|..++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            466889999988765599999884 99999987765

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.12  E-value=0.3  Score=45.18  Aligned_cols=38  Identities=26%  Similarity=0.546  Sum_probs=31.9

Q ss_pred             cCCCCCEEEEEeecC-CCeEEEEe-CCeeeEecCCCeeec
Q 017347          324 TLSVGDYVVVRKVTN-NGWAEGEC-KGKAGWFPFGYIERR  361 (373)
Q Consensus       324 sl~~gd~I~V~~~~~-~gW~~G~~-~g~~G~fP~~Yve~l  361 (373)
                      ++..|+.+.|++..+ .||...+. +|..||||..|+...
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            467899999998765 68999986 899999999998653

>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase

Probab=89.80  E-value=18  Score=34.12  Aligned_cols=28  Identities=21%  Similarity=0.076  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017347          192 KLDAAEVKLHDLKSNMAILGKEAAAAMA  219 (373)
Q Consensus       192 eL~~ae~K~~e~~e~~~~L~kea~~~m~  219 (373)
                      +.+.+.+|+.+..--+..++|+-.-++.
T Consensus       162 ~~~K~~EKy~~m~~KL~~~hN~YlL~I~  189 (237)
T cd07685         162 DRDKAKEKYVKSLWKLYALHNEYVLAVR  189 (237)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            5566666666665555666666555553

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=89.78  E-value=2.6  Score=40.43  Aligned_cols=19  Identities=32%  Similarity=0.403  Sum_probs=12.6

Q ss_pred             hhhhHHHHHHhcCCCchHHHHHHH
Q 017347          134 TQVAEPLRAMVLGAPLDDARHLAQ  157 (373)
Q Consensus       134 ~~fl~PL~~~~~~~~lk~~~~~k~  157 (373)
                      .+||+||+.---.     ||||+-
T Consensus        57 EQYLTPLQQKEV~-----iRHLka   75 (305)
T PF15290_consen   57 EQYLTPLQQKEVC-----IRHLKA   75 (305)
T ss_pred             HHhcChHHHHHHH-----HHHHHH
Confidence            3899999754332     667654

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=89.77  E-value=18  Score=34.16  Aligned_cols=88  Identities=14%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHh--h-ccCCCCCCChHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKY--G-SDNTCTSGNTLSKAALSYGRARAQM  121 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~--g-~e~~~~~~s~~g~al~~~g~a~~~l  121 (373)
                      +.+++.|+.+++.++.+.+.+..-+=    . --.+|  .+-.|..-..++  | .|.|     .+..++..+-.-...|
T Consensus         4 ~~Gy~~l~~r~~~g~~~~~el~~f~k----E-RA~IE~~YaK~L~kLskk~~~g~~E~G-----Tl~~sw~~~~~E~e~~   73 (240)
T cd07672           4 TGGYDCIIQHLNDGRKNCKEFEDFLK----E-RASIEEKYGKELLNLSKKKPCGQTEIN-----TLKRSLDVFKQQIDNV   73 (240)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhcCCCCcccc-----hHHHHHHHHHHHHHHH
Confidence            45778888888888777777754331    0 00122  122233233332  2 2444     7889999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          122 EKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       122 ~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      +..+..+...+... +.||..|.+
T Consensus        74 a~~H~~la~~L~~~-~~~~~~f~~   96 (240)
T cd07672          74 GQSHIQLAQTLRDE-AKKMEDFRE   96 (240)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHH
Confidence            99999999999986 558988864

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=89.51  E-value=0.21  Score=52.21  Aligned_cols=59  Identities=25%  Similarity=0.330  Sum_probs=42.4

Q ss_pred             eEEEEeccCCCCCC------CCccCCCCCEEEEEeec-CCCeEEEEe--CCeeeEecCCCeeeccCCC
Q 017347          307 FLGEVVHPYQAESD------VELTLSVGDYVVVRKVT-NNGWAEGEC--KGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       307 ~~~~alydf~a~~~------~ELsl~~gd~I~V~~~~-~~gW~~G~~--~g~~G~fP~~Yve~l~~~p  365 (373)
                      ++-.++-.|.+-.+      .-|.+.+||++.+..-. .+.||+|+.  .+..||||++-|.....+|
T Consensus       605 pkm~~vq~ysg~p~Pag~igP~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp  672 (865)
T KOG2996|consen  605 PKMDVVQNYSGIPPPAGSIGPRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP  672 (865)
T ss_pred             cchhhhhccCCCCCCCccCCCceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence            44455555554332      34778999999876654 567999998  5689999999998766555

>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins

Probab=88.62  E-value=21  Score=33.46  Aligned_cols=92  Identities=17%  Similarity=0.135  Sum_probs=57.4

Q ss_pred             HHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 017347           52 RLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLL  129 (373)
Q Consensus        52 ~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~--~~~~s~~g~al~~~g~a~~~l~~~~~~~~  129 (373)
                      +|-.+...++.|...+-++.+...       |.+..|..-+.+|..-..  .+....|..++..+=.....|+..+..|.
T Consensus        13 rlK~~~~~~ke~~~FlkkRa~iEe-------eYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~~h~~~a   85 (234)
T cd07652          13 RLKQSIASAKEFATFLKKRAAIEE-------EHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNGLRFA   85 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444445545544444322       233345554444443211  11233688999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHhcCCCchHHH
Q 017347          130 KALGTQVAEPLRAMVLGAPLDDAR  153 (373)
Q Consensus       130 ~~~~~~fl~PL~~~~~~~~lk~~~  153 (373)
                      ..+. ++.+||..+..  +++..|
T Consensus        86 ~~L~-~~~~eL~~l~~--~~e~~R  106 (234)
T cd07652          86 KALN-EMSDELSSLAK--TVEKSR  106 (234)
T ss_pred             HHHH-HHHHHHHHHHH--HHHHHH
Confidence            9995 79999998885  566655

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=86.29  E-value=1.4  Score=31.46  Aligned_cols=35  Identities=26%  Similarity=0.530  Sum_probs=28.3

Q ss_pred             ccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCe
Q 017347          323 LTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI  358 (373)
Q Consensus       323 Lsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yv  358 (373)
                      ..+..|..+.|.. ...+|.+.+.+|..||++.+.|
T Consensus        19 ~~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence            3466788888884 4779999999999999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.07  E-value=58  Score=33.98  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          106 TLSKAALSYGRARAQMEKERGNL-LKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV  173 (373)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~-~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~  173 (373)
                      .+..++..+..+...+..+...+ ...-...+.++|+.|+.  .+..++..-.++.++-+.++..+.++
T Consensus       330 ~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~i~--~~~~~k~~~~~r~~~~~~~~~~~~~~  396 (503)
T KOG2273|consen  330 ELSEALSGLAKVIESLSKLLEKLTAEKDSKKLAEQLREYIR--YLESVKSLFEQRSKALQKLQEAQREL  396 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999 88888899999999995  33334333333433455555555555

>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33

Probab=82.47  E-value=41  Score=31.11  Aligned_cols=68  Identities=18%  Similarity=0.055  Sum_probs=44.1

Q ss_pred             HHHHHHHHhhccCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc-CCCchHHHH
Q 017347           87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL-GAPLDDARH  154 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~~---~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~-~~~lk~~~~  154 (373)
                      ++|..+..-+.-|..   ...+.|..|+...|.++.-||+.-.+.-..=-..+++-|..|.- =+.+.||-+
T Consensus        52 kiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y~~IG~~faeQpk~D~~pl~d~L~~Y~GlL~~fPDii~  123 (207)
T cd07669          52 KLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTYEAVGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIH  123 (207)
T ss_pred             HHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHhCcccCCccHHH
Confidence            566666655554441   12245889999999999999998777766655666666665542 013566654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2

Probab=82.06  E-value=30  Score=32.37  Aligned_cols=126  Identities=13%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             CCccccchHHhh-hhHHHHHHHHHhhh---------hhhH-HHHHhhhhcccccC----CCCCCchhhHHHHHHHHhhcc
Q 017347           34 SDNVVTDEAELH-QHQRLERLYISTRA---------GKHF-QRDIVRGVEGYIVT----GSKQVEIGTKLSEDSRKYGSD   98 (373)
Q Consensus        34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~---------~k~~-~~~i~r~~e~~~~~----~~~~~e~~~~Lg~~m~~~g~e   98 (373)
                      ++++...|..+. .+...+++...|..         +|.| ..+|.+.+-+..++    |...++.|+-||.+- .||.-
T Consensus        16 d~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~s-~~G~a   94 (220)
T cd07617          16 DAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFGPGT-PYGKT   94 (220)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCC-chHHH
Confidence            455665555555 56677777766542         2222 34555545332221    233344444444321 23333


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 017347           99 NTCTSGNTLSKAALSYGRARAQM-EKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE  167 (373)
Q Consensus        99 ~~~~~~s~~g~al~~~g~a~~~l-~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le  167 (373)
                      +.     .+|.|..++|++...+ ..+..+|+.-+....-.-|+....  ..|-...++-.||..+..+.
T Consensus        95 L~-----~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k--~RKkLe~rRLd~D~~K~r~~  157 (220)
T cd07617          95 LI-----KVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISK--ERRLLQNRRLDLDACKARLK  157 (220)
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence            32     5789999999998864 568888888887655445554442  33333344556776666653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified

>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.32  E-value=1.3  Score=44.64  Aligned_cols=53  Identities=26%  Similarity=0.318  Sum_probs=43.6

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeee
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIER  360 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~  360 (373)
                      -.+|+++..+....|+.+++||+|.|-.--=+|..+|.+  .++.|+||+.=|+.
T Consensus       511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            468999999999999999999999887665566677766  78999999865553

>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]

Probab=80.92  E-value=2.3  Score=42.07  Aligned_cols=55  Identities=20%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             eEEEEeccCCC--CCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQA--ESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a--~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..+++.-+|.+  .+.++|-+..||+|.++.+...|-|.|-++++.|-|+.-||..+
T Consensus       137 ~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~  193 (361)
T KOG4384|consen  137 GRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVI  193 (361)
T ss_pred             ccccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccc
Confidence            44566666664  57889999999999999999999999999999999999999875

>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1)

Probab=80.55  E-value=55  Score=31.34  Aligned_cols=153  Identities=13%  Similarity=0.136  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCC-------CchHHHHH-------HHHHHHHHHHHHHHHH
Q 017347          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA-------PLDDARHL-------AQRYDRMRQEAEAQAI  171 (373)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~-------~lk~~~~~-------k~~y~~~r~~le~rrl  171 (373)
                      .+-.+...+=..-..|+..+..+...+.+..+++++..+...       .+|+.+..       -+-..+..++++.-|=
T Consensus        61 tl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~v~~sKk  140 (258)
T cd07680          61 SLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKK  140 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            466677777777888889999999989888999985222100       12222200       0001122233444333


Q ss_pred             HH-HH-H---hh-----hh-ccCCCCcc-----------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 017347          172 EV-SK-R---QA-----KV-RETPGNPD-----------LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT  229 (373)
Q Consensus       172 d~-k~-r---~~-----K~-~e~~~~~~-----------~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~  229 (373)
                      .| +. |   .+     +. .+...++.           ....+..++.+|+..-+.+......-...|..+-..-|.+-
T Consensus       141 ~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~E  220 (258)
T cd07680         141 AYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFE  220 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            33 00 0   00     00 01111111           11233334444555545554444555566666655555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHH
Q 017347          230 LQRLIAMVEAERTYHQRVLQI-----LDQLEGEML  259 (373)
Q Consensus       230 l~~L~~~veAql~Yh~q~~~i-----L~~L~~eL~  259 (373)
                      -.+|.-|-++...+|+.+ .+     +..+...|.
T Consensus       221 e~Ri~flk~~l~~~~~~l-~~~~~~~~~~~~~~l~  254 (258)
T cd07680         221 EKRLVFLKEVLLDIKRHL-NLAESSSYAHVYRELE  254 (258)
T ss_pred             HHHHHHHHHHHHHHHHHc-CcccchhHHHHHHHHH
Confidence            668888888888888654 43     444555444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	373
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		3e-05
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		3e-05
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		4e-05
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		4e-05
1uff_A	93	Solution Structure Of The First Sh3 Domain Of Human		5e-05
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		6e-05
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		7e-05
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		7e-05
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		7e-05
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		7e-05
2a28_A	54	Atomic-Resolution Crystal Structure Of The Second S		8e-05
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		8e-05
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		9e-05
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		1e-04
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		1e-04
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		1e-04
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		1e-04
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		1e-04
2cub_A	88	Solution Structure Of The Sh3 Domain Of The Human C		3e-04
2js0_A	61	Solution Structure Of Second Sh3 Domain Of Adaptor		3e-04
4e6r_A	58	Crystal Structure Of A Cytoplasmic Protein Nck2 (Nc		3e-04
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		4e-04
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		7e-04
2frw_A	57	Solution Structure Of The Second Sh3 Domain Of Huma		9e-04

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++ Y A++  ELT   GD ++V +    GW EGE  GK GW P  Y++
Sbjct: 7   KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++ Y A++  ELT   GD ++V +    GW EGE  GK GW P  Y++
Sbjct: 8   KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 308 LGEVVHP---YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           LG VV     +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 3   LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFG 356
           GS+ + G +  +V+ PY+A++D ELT+  GD V +  +   + GW EGE  G+ G FP  
Sbjct: 1   GSSGSSGDYC-KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDN 59
Query: 357 YIE 359
           +++
Sbjct: 60  FVK 62

>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Intersectin2 (Kiaa1256) Length = 93

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFG 356
           GS+ + GY     ++P++A +  E++ + GD + V  + V   GW  G  +G  GWFP  
Sbjct: 1   GSSGSSGY---RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCN 57
Query: 357 YIER 360
           Y+E+
Sbjct: 58  YVEK 61

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct: 16  FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 310 EVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 359
           +V+ PY+A++D ELT+  GD V +  +   + GW EGE  G+ G FP  +++
Sbjct: 6   KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 310 EVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 359
           +V+ PY+A++D ELT+  GD V +  +   + GW EGE  G+ G FP  +++
Sbjct: 13  KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 310 EVVHPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGECKGKAGWFPFGYIE 359
           +V+ PY+A++D ELT+  GD V +  +   + GW EGE  G+ G FP  +++
Sbjct: 7   KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct: 10  FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3 Domain Of Yeast Bzz1 Determined From A Pseudomerohedrally Twinned Crystal Length = 54

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 310 EVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGY 357
           E ++ Y+A+ D E+++  GD + V+R    +GW  GEC G  G FP  Y
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS + +G      ++ YQA  D E++    D +   ++ ++GW  G CKG+ G FP  Y+
Sbjct: 4   GSENDLG-ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62
Query: 359 ERR 361
           E R
Sbjct: 63  ELR 65

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 17  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 361
           ++ YQA  D E++    D +   ++ ++GW  G CKG+ G FP  Y+E R
Sbjct: 23  LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 72

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 361
           ++ YQA  D E++    D +   ++ ++GW  G CKG+ G FP  Y+E R
Sbjct: 15  LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS+ + G  L + ++ +QA  D EL L  GD V++ +    GW  G   GK G FP  Y+
Sbjct: 1   GSSGSSGR-LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
Query: 359 E 359
           E
Sbjct: 60  E 60

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Cytoplasmic Protein Nck1 Length = 88

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           Y AE + EL+L  G  V+V +  ++GW  G   G+ GWFP  Y+
Sbjct: 26  YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69

>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck Length = 61

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           Y AE + EL+L  G  V+V +  ++GW  G   G+ GWFP  Y+
Sbjct: 13  YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56

>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2) From Homo Sapiens At 2.20 A Resolution Length = 58

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           V   Y AE + EL+L  G  V V +  ++GW  G   G+ GWFP  Y+
Sbjct: 6   VXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           ++  ++ EL++  GD + V +V   GW EG   G+ GWFP  Y+
Sbjct: 19  FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           YQA+ D ELT+SVG+ +   +  + GW EG+  G+ G FP  ++
Sbjct: 10  YQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53

>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Adaptor Protein Nck2 Length = 57

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           Y AE + EL+L  G  V V +  ++GW  G   G+ GWFP  Y+
Sbjct: 9   YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	373
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	4e-14
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	4e-13
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-12
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-12
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	3e-12
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	4e-12
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	5e-12
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	7e-12
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	8e-12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	9e-12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-09
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-11
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-11
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-06
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	1e-11
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	1e-11
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	1e-11
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	2e-11
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-11
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-11
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	2e-11
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	3e-11
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	3e-11
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	3e-11
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	4e-11
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	4e-11
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	4e-11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	4e-11
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	6e-11
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	6e-11
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	6e-11
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	7e-11
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	7e-11
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	8e-11
3u23_A	65	CD2-associated protein; structural genomics, struc	9e-11
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	9e-11
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	1e-10
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	2e-10
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-10
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	2e-10
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-10
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	2e-10
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-10
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-10
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	2e-10
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	3e-10
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	3e-10
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	4e-10
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-10
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	4e-10
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	4e-10
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-05
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	4e-10
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	4e-10
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	5e-10
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	5e-10
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	5e-10
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	5e-10
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	6e-10
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	6e-10
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-10
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	6e-10
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	6e-10
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	6e-10
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	7e-10
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	8e-10
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	9e-10
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	9e-10
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	9e-10
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	1e-09
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	1e-09
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	1e-09
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-09
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	1e-09
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	2e-09
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	4e-08
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	2e-09
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	2e-09
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-09
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	2e-09
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	2e-09
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	3e-09
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	3e-09
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	3e-09
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	3e-09
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	4e-09
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	4e-09
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	6e-09
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	7e-09
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	8e-09
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	8e-09
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	9e-09
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	9e-09
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	9e-09
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	1e-08
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-08
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-08
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	2e-08
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-08
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	2e-08
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	2e-08
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	2e-08
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-08
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-08
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	3e-08
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	3e-08
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	3e-08
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	3e-08
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-08
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-08
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	4e-08
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	5e-08
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	5e-08
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	6e-08
1wxb_A	68	Epidermal growth factor receptor pathway substrate	6e-08
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	7e-08
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	7e-08
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	8e-08
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-07
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	1e-07
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-07
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-07
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	2e-07
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	2e-07
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	2e-07
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	4e-07
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	4e-07
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	5e-07
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	5e-07
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	6e-07
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	8e-07
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	8e-07
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	9e-07
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	9e-07
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	1e-06
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-06
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-06
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-06
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-06
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-06
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	1e-06
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-06
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-06
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	2e-06
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-06
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	2e-06
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	3e-06
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	3e-06
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	4e-06
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	4e-06
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	4e-06
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	6e-06
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	8e-06
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	9e-06
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	1e-05
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	1e-05
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	1e-05
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	1e-05
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	1e-05
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-05
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	2e-05
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	3e-05
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	4e-05
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	4e-05
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	4e-05
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	4e-05
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	4e-05
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	5e-05
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	7e-05
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	8e-05
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	8e-05
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-04
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	2e-04
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	2e-04
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-04
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	3e-04
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	4e-04
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	4e-04
1i07_A	60	Epidermal growth factor receptor kinase substrate	5e-04
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	6e-04

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 65.8 bits (161), Expect = 4e-14
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 308 LGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             + +      A     L L VGD V V ++  NG  EGE  G+ G FPF +++
Sbjct: 3   FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 24/93 (25%)

Query: 267 AAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLS 326
           +  + P PS       P + +                             A     L L 
Sbjct: 3   SGSSGPLPST---QNGPVFAKAIQKR---------------------VPCAYDKTALALE 38

Query: 327 VGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           VGD V V ++  NG  EGE  G+ G FPF +++
Sbjct: 39  VGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 305 GYFLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           G     V+      A     L L VG+ V V K+  +G  EGEC GK G FPF ++ 
Sbjct: 5   GPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 61

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V   Y AE + EL+L  G  V+V +  ++GW  G   G+ GWFP  Y+ 
Sbjct: 22  VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS+ + G     VV  Y+ + + EL+L  G+ V V +   +GW       + GW P  Y+
Sbjct: 1   GSSGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60

Query: 359 ERRDRVLAS 367
           E ++   +S
Sbjct: 61  EAQNSGPSS 69

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
               ++  ++ EL++  GD + V +V   GW EG   G+ GWFP  Y+ 
Sbjct: 15  ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVR 63

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS+ + G      ++ Y A++  EL LS GD + V     +GW   E  G+ G+ P  Y+
Sbjct: 1   GSSGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60

Query: 359 E 359
           E
Sbjct: 61  E 61

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 59.3 bits (144), Expect = 7e-12
 Identities = 14/62 (22%), Positives = 20/62 (32%)

Query: 298 NGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGY 357
           +GS+   G                 L L  GD + +      G   G    K G F F Y
Sbjct: 3   SGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIY 62

Query: 358 IE 359
           ++
Sbjct: 63  VD 64

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 59.1 bits (144), Expect = 8e-12
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           +   +QA+S  ELTL  GD V + K  +  W EGE  G+ G FP  Y+E
Sbjct: 6   LKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 62.7 bits (152), Expect = 9e-12
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS + +       +  Y+  S  E+ LS GD V V + + +GW   + K K GW P  ++
Sbjct: 4   GSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63

Query: 359 E 359
           E
Sbjct: 64  E 64

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 282 PPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGW 341
           P ++  +  + +                  +  Y A    E++L  G+ V V     +GW
Sbjct: 59  PASF--LEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGW 116

Query: 342 AEGECKGKAGWFPFGYIERRDRVLAS 367
                    G+FP  Y+++  + ++ 
Sbjct: 117 WVIRKDDVTGYFPSMYLQKSGQDVSQ 142

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-----GWFPFGYIE 359
           +V   Y A    +L+L+ G  +++ K   +GW +GE + +      GWFP  +++
Sbjct: 11  QVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 64.2 bits (155), Expect = 1e-11
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 268 APTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSV 327
             + P P     P P A   VN    +  +      +            A     L L V
Sbjct: 206 EGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQK-----RVPNAYDKTALALEV 260

Query: 328 GDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           G+ V V K+  +G  EGEC GK G FPF ++ 
Sbjct: 261 GELVKVTKINVSGQWEGECNGKRGHFPFTHVR 292

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIE 359
             +  +    + +L    GD + +R      W   E  +GK G  P  Y+E
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             Y+ ++  +L  + GD +++R+  +  W +GE  G +G FP   +E
Sbjct: 14  CNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V + Y A  D ELT+ VG+ +  V+K+   GW EGE  G+ G FP  +++
Sbjct: 6   VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 55

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 16/69 (23%), Positives = 24/69 (34%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS+ + G         YQ   D E++   G  V V +   +GW         GW P  Y+
Sbjct: 1   GSSGSSGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYL 60

Query: 359 ERRDRVLAS 367
              +     
Sbjct: 61  VLDENEQPD 69

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 57.9 bits (141), Expect = 2e-11
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 310 EVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           E ++ Y+A+ D E+++  GD + V+R    +GW  GEC G  G FP  Y +
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 294 SQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWF 353
              H+   D M     E +  +   S +EL    GD + +    N  W EG  +G  G F
Sbjct: 6   HHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIF 65

Query: 354 PFGYIE 359
           P  +++
Sbjct: 66  PLSFVK 71

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             ++A++  EL L  GD V + K  +  W EGE  G+ G FP  YIE
Sbjct: 14  FDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
               +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+ 
Sbjct: 9   AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             Y+A    +L    GD ++V    N  W EGE KGK G FP  ++E
Sbjct: 12  FSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
               +Q  ++ EL+ S GD + V +V   GW EG   G+ GWFP  Y+ 
Sbjct: 11  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           V+  +  E+  EL +  G+ V V K  N+ WA     G+ G  P  Y+E 
Sbjct: 12  VLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 57.1 bits (139), Expect = 4e-11
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             +   S +EL    GD + +    N  W EG  +G  G FP  +++
Sbjct: 11  FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++ E+D EL    GD + +    +  W EG   G++G+FP  Y++
Sbjct: 20  YDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQ 66

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
            V PY ++S  E+    G  V V +    GW      GK GW P  Y+++
Sbjct: 13  TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKK 62

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 56.8 bits (138), Expect = 4e-11
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIER 360
            +  +    + EL L V D ++V     + W E      G  G FP  Y   
Sbjct: 8   AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           S  +           Y   +  EL+   G  +++ +  ++ W EG   G  G  P  YI 
Sbjct: 3   SGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIV 62

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++ E+  EL    GD + +    +  W EG   G++G+FP  Y+E
Sbjct: 10  YDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 56.4 bits (137), Expect = 6e-11
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V   YQA+ D ELT+SVG+ +   +  + GW EG+  G+ G FP  ++ 
Sbjct: 6   VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVR 54

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 57.0 bits (138), Expect = 7e-11
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 299 GSTDAMGYFLGEVV--HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFG 356
           GS+ + G  + E V    Y   +  EL+   GD + + +  ++ W  GE  G  G  P  
Sbjct: 1   GSSGSSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHK 60

Query: 357 YIE 359
           YI 
Sbjct: 61  YIT 63

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++ E++ EL    GD + +    +  W EG   G +G+FP  Y+E
Sbjct: 14  YDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V   Y  ++D EL L VGD + V      GW EG   GK G FP  +I+
Sbjct: 12  VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 56.1 bits (136), Expect = 9e-11
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V+  Y  +++ EL L VGD + + +    GW  G    K G FP  +++
Sbjct: 12  VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 56.6 bits (137), Expect = 9e-11
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++ +QA  D EL L  GD V++ +    GW  G   GK G FP  Y+E
Sbjct: 12  ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERRDR 363
            +  +    + EL L V D ++V     + W E      G  G FP  Y     +
Sbjct: 11  AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 65

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++ Y  + + EL+   G  + V K  ++GW EG   G  G FP  Y+E
Sbjct: 22  AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 1e-10
 Identities = 59/382 (15%), Positives = 116/382 (30%), Gaps = 104/382 (27%)

Query: 13  EQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQ-RLERLYISTRAGKHFQRD--IVR 69
           E V    Q +  Q        SD+    +  +H  Q  L RL  S    K ++    ++ 
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS----KPYENCLLVLL 251

Query: 70  GV------EGY------IVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA 117
            V        +      ++T ++  ++   LS  +  + S +  +   T  +        
Sbjct: 252 NVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------- 303

Query: 118 RAQMEKERGNLLKALGTQVAE---------PLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168
                  +  LLK L  +  +         P R  ++   + D       +  +  +   
Sbjct: 304 -------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 169 QAIEVSKRQAKVRETPGNPDLALKLDAAEVK--LHDLKSNMAILGKEA---AAAMA---- 219
             IE S                  L+ AE +     L    ++    A      ++    
Sbjct: 357 TIIESSLNV---------------LEPAEYRKMFDRL----SVFPPSAHIPTILLSLIWF 397

Query: 220 AVESQQQRLTLQRLI--AMVE---AERTY--HQRVLQILDQLEGEMLSERQRIEAAPTAP 272
            V      + + +L   ++VE    E T       L++  +LE E    R  ++      
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 273 TPSVDTMPPPPA--YEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDY 330
           T   D + PP    Y      Y   +H      +G+      H    E    +TL    +
Sbjct: 458 TFDSDDLIPPYLDQY-----FY---SH------IGH------HLKNIEHPERMTLFRMVF 497

Query: 331 V----VVRKVTNNGWAEGECKG 348
           +    + +K+ ++  A      
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGS 519

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 362
           + YQ +S  ELT+  GD + +   TN  W + E  G+ G+ P  Y+++ D
Sbjct: 13  YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKLD 62

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             Y   S  EL+   G  +++    +  W EG   G  G  P  YI 
Sbjct: 13  FDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V+ PY+A++D ELT+  GD   ++ +   + GW EGE  G+ G FP  +++
Sbjct: 14  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V   Y  ++D EL L VGD + V      GW EG   GK G FP  +I+
Sbjct: 23  VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 71

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + Y A ++ EL+ S G  + V    +  W +GE  G  G FP  Y++
Sbjct: 41  YDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 87

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 361
           + ++  +  EL    GD + +  +++  W +G  KG+ G  P  Y+  +
Sbjct: 10  YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             +  +   EL    GD + +    +  W EG+   + G FP  Y+ 
Sbjct: 9   FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + Y A++  ELT   GD ++V +    GW EGE  GK GW P  Y++
Sbjct: 10  YDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 290 GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECK 347
           G   S   N   ++       V++ Y A +  EL+L   + + V  V   ++ W  GE  
Sbjct: 1   GSSGSSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG 60

Query: 348 GKAGWFPFGYIE 359
            + G  P  Y+E
Sbjct: 61  NQKGKVPITYLE 72

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 18/68 (26%), Positives = 34/68 (50%)

Query: 293 ASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGW 352
           +   H+  +D  G  L   ++ YQ +S  E+T+  GD + +   TN  W + E   + G+
Sbjct: 4   SHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGF 63

Query: 353 FPFGYIER 360
            P  Y+++
Sbjct: 64  VPAAYVKK 71

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++P++A +  E++ + GD   V  + V   GW  G  +G  GWFP  Y+E
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + +  + D +L L  GD V + +  +  W +G C G+ G FP  Y++
Sbjct: 9   YQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 27/123 (21%), Positives = 37/123 (30%), Gaps = 8/123 (6%)

Query: 237 VEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQT 296
           VE                    + E     A P   TP       P A            
Sbjct: 178 VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAA--------ITP 229

Query: 297 HNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFG 356
              + +   +          A     L L VGD V V ++  NG  EGE  G+ G FPF 
Sbjct: 230 LPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFT 289

Query: 357 YIE 359
           +++
Sbjct: 290 HVK 292

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 277 DTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV 336
            T+  P        + +    N  T          ++ +      +L    G+ +V+ + 
Sbjct: 96  TTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEK 155

Query: 337 TNNGWAEGECK-GKAGWFPFGYIERRDR 363
               W     K G+ G  P  Y+E+  R
Sbjct: 156 PEEQWWSARNKDGRVGMIPVPYVEKLVR 183

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V+  Y  +++ EL L VGD + + +    GW  G    K G FP  +++
Sbjct: 6   VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++ Y A+   EL+ +  D + + K   +GW  G  +GK G FP  Y+ 
Sbjct: 10  ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT 58

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            + PY   ++ ELT   G+  +++ ++    GW +GE  GK G FP  +  
Sbjct: 11  TLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 54.7 bits (132), Expect = 5e-10
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 294 SQTHNGSTDAMGYFLGEVV---HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA 350
           S   +G+ D     LG      + YQA  D E++    D +   ++ ++GW  G CKG+ 
Sbjct: 2   SSGSSGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRY 61

Query: 351 GWFPFGYIE 359
           G FP  Y+E
Sbjct: 62  GLFPANYVE 70

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKV----TNNGWAEGECK--GKAGWFPFGYIERRDR 363
           V++PY  ++D EL L  GD++ +  +    T+ GW  G     G +G  P  YI + D 
Sbjct: 21  VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE 79

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTN-NGWAEGECKGKAGWFPFGYIE 359
             + + A    EL+L  GD V +  ++    GW +GE  G+ GWFP  Y+E
Sbjct: 12  ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++  +  EL    GD + +  +++  W +G  KG+ G  P  Y+ 
Sbjct: 14  YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 60

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 9/47 (19%), Positives = 27/47 (57%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + +  + + +L +  GD + + + +N  W +G+ + + G+FP  +++
Sbjct: 14  YKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           + YQ +S  E+T+  GD + +   TN  W + E   + G+ P  Y+++
Sbjct: 12  YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 59

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 55.5 bits (133), Expect = 6e-10
 Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 17/103 (16%)

Query: 275 SVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVV--HPYQAESDVELTLSVGDYVV 332
           S   +P       VNG     T  G  D    F+ +V   H Y A    EL L  GD V+
Sbjct: 11  SSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVL 70

Query: 333 VRKVTNN-----GWAEG----------ECKGKAGWFPFGYIER 360
           V    N      GW  G          E +   G FP  + ER
Sbjct: 71  VIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER 113

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 55.5 bits (133), Expect = 6e-10
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 266 EAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTL 325
           +A P  P    +     P+        +  + +  +       G  ++ +Q     +L+L
Sbjct: 19  DAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSL 78

Query: 326 SVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRD 362
            +GD V +++ T   W  G     K   G FP  +I  ++
Sbjct: 79  QIGDVVRIQE-TCGDWYRGYLIKHKMLQGIFPKSFIHIKE 117

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V+ PY+A++D ELT+  GD   ++ +   + GW EGE  G+ G FP  +++
Sbjct: 7   VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 359
           E+   + A+   E+TL   D V+V +   +GW  GE    G+ GWFP  +  
Sbjct: 21  EITKAFFAKQADEVTLQQADVVLVLQ-QEDGWLYGERLRDGETGWFPEDFAR 71

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 313 HPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             Y       L     D + +  K   N W  G+  GK G FP  ++E
Sbjct: 17  KDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             ++   D EL     D + +    +     GE  G  GWFP  ++E
Sbjct: 14  LDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVE 60

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             +  + D EL    GD++ V   ++  W +G C G+ G FP  Y+ 
Sbjct: 9   FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           V   Y AE + EL+L  G  V V +  ++GW  G   G+ GWFP  Y+ 
Sbjct: 6   VXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIER 360
           +G     V++ ++AE   ELT  VG+ + +    N  W   +     G  G  P G++  
Sbjct: 3   LGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSI 62

Query: 361 RD 362
            D
Sbjct: 63  ID 64

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 313 HPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++A +D EL+   GD + V+ +  +  W + E  GK G+ P  YIE
Sbjct: 16  YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 63

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           YQA  D E++    D +   ++ ++GW  G CKG+ G FP  Y+E
Sbjct: 18  YQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 299 GSTDAMGYFLGEV--VHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPF 355
           GS+ + G    +   ++  +AE D EL+ + G     V      GW EG   GK G  P 
Sbjct: 1   GSSGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPE 60

Query: 356 GYIE 359
            Y+E
Sbjct: 61  NYVE 64

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFG 356
           GS+ + G      +  Y  ++   L+   GD + +  V     GW  G   G++G FP  
Sbjct: 1   GSSGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPAD 60

Query: 357 YIE 359
            ++
Sbjct: 61  IVQ 63

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 15/86 (17%), Positives = 25/86 (29%)

Query: 274 PSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV 333
            S        A    +   +S                      A    +L +  G  V+V
Sbjct: 217 QSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLV 276

Query: 334 RKVTNNGWAEGECKGKAGWFPFGYIE 359
            +  +NG  + E  G+ G  P  Y+ 
Sbjct: 277 TQKMSNGMYKAELDGQIGSVPHTYLR 302

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 9/124 (7%)

Query: 238 EAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTH 297
           E     H  +    +  E    +   +I        P++          E + + A +  
Sbjct: 87  EGNAVCHYLIE-RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKP 145

Query: 298 NGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFG 356
                     +      +  E + +L    G+ + +   TN  W E     G  G  P  
Sbjct: 146 I-------IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPAN 198

Query: 357 YIER 360
           Y++ 
Sbjct: 199 YVQI 202

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIER 360
            ++ Y+ +++ EL L  GD V V +  ++GW  G  +   K G FP  Y+  
Sbjct: 12  AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 314 PYQAESDVELTLSVGD--YVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           PY+A++D ELT+  GD   ++ +   + GW EGE  G+ G FP  +++
Sbjct: 15  PYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYV-VVRKVTNN--GWAEGECKGKAGWFPF 355
           GS+ + G    + ++ Y+ ++D EL+   G  + ++ K   +  G+ EGE  G+ G FP 
Sbjct: 1   GSSGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPS 60

Query: 356 GYIE 359
             +E
Sbjct: 61  VLVE 64

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIER 360
             + + A    EL+L  GD + ++ K    GW  GE  G+ GWFP  Y+E 
Sbjct: 10  ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEE 60

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++A  D ELT   G+ ++V   ++  W +GE     G FP  ++ 
Sbjct: 24  YDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVT 70

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             +   ++ EL    GD + V   +N  W  G+   + GWFP  ++ 
Sbjct: 17  WDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVR 63

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 317 AESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIER 360
            +    L L  GD V V   + + G+  GE  G  G  P   ++ 
Sbjct: 25  GQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDH 69

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIE 359
            ++ ++ E+D EL L+ GD V +      GW  AE E   K G  P  ++ 
Sbjct: 6   ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++A  + EL    G+ V V   +N  W  G    K G FP  Y+ 
Sbjct: 8   YDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIE 359
             +  ++ VE++   G+ + + +  +  W EG   G  + G FP  Y++
Sbjct: 13  FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 51.4 bits (124), Expect = 4e-09
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 309 GEVVHPYQAESDVELTLSVGDYV-VVRKVTNNGW--AEGECKGKAGWFPFGYIE 359
            +V++ Y  + D E+T++ GD + +V + T +GW     +  G+ G  P  YI 
Sbjct: 4   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++A  D ELT   G+ + V   ++  W +GE     G FP  ++ 
Sbjct: 12  YDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIE 359
            ++ ++ E+D EL L+ GD V +      GW  AE E   K G  P  ++ 
Sbjct: 10  ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           +  Y A  + +L+   G+ +++ + T   W  GE  G  G+ P  ++ +
Sbjct: 13  IADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGK 61

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIE 359
             +  ++ VE++   G+ + + +  +  W EG   G  + G FP  Y++
Sbjct: 14  FNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 50.8 bits (122), Expect = 9e-09
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + ++A  D ELT   G+ + V   ++  W +GE     G FP  ++ 
Sbjct: 24  YDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 55.4 bits (132), Expect = 9e-09
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            +  +   S +EL    GD + +    N  W EG  +G  G FP  +++
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 227

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 50.8 bits (122), Expect = 9e-09
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             + A+ D  L  S  D + V +     W  GE  G  GWFP  Y++
Sbjct: 17  CSWTAKKDNHLNFSKHDIITVLE-QQENWWFGEVHGGRGWFPKSYVK 62

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAESDV-ELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIE 359
             + +       EL L  GD + + +   +GW+ G+     K GW P  Y++
Sbjct: 5   AAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 317 AESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           A    E+T+  GD + +   TN  W + E   + G+ P  Y+++
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 45

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 311 VVHPYQA-ESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
            + P+ A  +   L+ + GD + ++     +GW  GE       GWFP  Y +
Sbjct: 11  TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW----AEGECKGKAGWFPFGYIERRDRVLA 366
            +  Y+ + +       G  + V +   NGW         K   GW P  Y+E+++   +
Sbjct: 15  SIADYEGDEE-TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPS 73

Query: 367 S 367
           S
Sbjct: 74  S 74

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
            PY A    E+T+  GD + +   TN  W + E   + G+ P  Y+++
Sbjct: 7   PPYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 53

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAG-WFPFGYIE 359
            +  Y+A+ + ELT      +   +    GW  G+  GK   WFP  Y+E
Sbjct: 11  ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVE 60

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 313 HPYQAESDVELTLSVGDYV-VVRKVT--NNGWAEGECKGKAGWFPFGYIE 359
           +   AES  EL+   GD + V+ + T   +GW      G+ G  P   ++
Sbjct: 10  YDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLK 59

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIERRD 362
            ++ + A  D  L+++ G+ + V+    N  W E + K   GW P  YI   +
Sbjct: 10  ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIER 360
            +H Y A    EL L  G+ + V     +GW +G     G+ G FP  Y+  
Sbjct: 12  ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 317 AESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            + + ELT   GD + V  ++  +G+  GE  G+ G  P  ++E
Sbjct: 25  VDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 311 VVHPYQAESDV-ELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
            + P+ A ++   L+ + GD + ++     +GW  GE       GWFP  Y +
Sbjct: 12  TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFGYIE 359
           + ++ +   +L    GD + V   T+    W EG+ +G+ G FP  Y+ 
Sbjct: 24  YSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 322 ELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMAEV 372
           E+T+  GD + +   TN  W + E   + G+ P  Y+++ D     ++   
Sbjct: 5   EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLA 55

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAE-SDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
             + +    S  EL L  GD V + +   +GW+  +     K GW P  Y+ 
Sbjct: 7   AAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT 58

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 313 HPYQAESDVELTLSVGDYV-VVRKVT--NNGWAEGECKGKAGWFPFGYIE 359
           +    +   EL  S GD + ++ +    + GW +    G+ G  P   ++
Sbjct: 14  YDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQ 63

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS+ + G      ++PY +    +LT + G+ ++V +  +  W  G    ++G FP  Y+
Sbjct: 1   GSSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQ-KDGEWWTGSIGDRSGIFPSNYV 59

Query: 359 ERRD 362
           + +D
Sbjct: 60  KPKD 63

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
           ++ + +VEL+   G+++ + +  N  W EG     G+ G FP  Y++
Sbjct: 26  FKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIER 360
           M       ++ ++AE D EL +S G+ + +    +  W   +     G  G  P  Y+  
Sbjct: 1   MAPLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRI 60

Query: 361 RD 362
            D
Sbjct: 61  ID 62

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG---KAGWFPFGYIE 359
            ++  QA++D ELT   G+ ++V    +  W  G  +G   + G FP  ++ 
Sbjct: 15  TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVH 66

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKV---TNNGWAEGECKGKAGWFPFGYIERRDRVLA 366
            V+ ++A +  EL++S    + ++       N  W   E  GK G+ P  YI + +   +
Sbjct: 18  AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPS 77

Query: 367 S 367
           S
Sbjct: 78  S 78

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS+ + G +  ++++ + A +  EL++   + + V +     W      G+AG+ P   +
Sbjct: 1   GSSGSSGKY-VKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNIL 59

Query: 359 ER 360
             
Sbjct: 60  GE 61

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 314 PYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAG-WFPFGYIE 359
            Y+A+ + ELT +    +   +  + GW  G+  GK   WFP  Y+E
Sbjct: 11  DYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-GWFPFGYIE 359
           + Y+A+   ELT   G  +        GW +G+   +   +FP  Y+E
Sbjct: 14  YDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVE 61

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 47.5 bits (114), Expect = 8e-08
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFGYIE 359
           + +  E   +L    GD + + K ++  N W  G   G+ G FP  Y+E
Sbjct: 10  YSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 315 YQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
           Y A  D ELT    D ++  +  ++ W  GE +  G  G FP  Y+ 
Sbjct: 9   YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 29/112 (25%), Positives = 38/112 (33%), Gaps = 17/112 (15%)

Query: 266 EAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMG--YFLGEVVHPYQAESDVEL 323
            AA  A + S+  +        VNG     +  G  D      F  +  H Y A    EL
Sbjct: 100 TAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDEL 159

Query: 324 TLSVGDYVVVRKVTN-----NGWAEG----------ECKGKAGWFPFGYIER 360
            L  GD V+V    N      GW  G          + +   G FP  + ER
Sbjct: 160 QLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTER 211

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 309 GEVV---HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIER 360
            E V     +    + +L    GD + +R      W   E  +GK G  P  Y+E+
Sbjct: 1   AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 312 VHPYQA-ESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
           +  + A ++   L+   GD + ++     +GW  GE +     GWFPF Y  
Sbjct: 13  IFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTR 64

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 17/75 (22%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVT---------------NNGWAEG--ECKGKAGWF 353
            ++P++ E   +L L  GD +VV +                 + GW  G  E   + G F
Sbjct: 16  ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75

Query: 354 PFGYIERRDRVLASK 368
           P  Y+E    V  ++
Sbjct: 76  PGTYVEFLGPVALAR 90

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 314 PYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
            Y A+ + E++   GDY+V  +  ++GW  G  +  G+ G  P  YIE
Sbjct: 14  DYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS+ + G    +V++ ++A +  ELT+  G+ + V   +   W      G++G+ P   +
Sbjct: 1   GSSGSSGL-KMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNIL 59

Query: 359 ERRD 362
           E   
Sbjct: 60  EPLS 63

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG-ECKGKAGWFPFGYIE 359
            V  + A+   +LT   G+ ++V +   +GW    + KG  G  P  Y+E
Sbjct: 15  AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIE 359
           + Y A    ELT+  GD + V    N  W  G   KG+ G+FP  ++ 
Sbjct: 13  YDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVA 60

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 307 FLGEVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           +    + P    ++ EL    G  + V      +G+  GE   + G  P   +  
Sbjct: 26  YDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSE 80

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 315 YQAESDVELTLSVGDY-VVVRKVTNNGWAEGECK-GKAGWFPFGYIE 359
           Y  +   EL+   GD    + +    GW  G    G+ G +P  Y+E
Sbjct: 12  YDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 309 GEVV---HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRD 362
            E V     +    + +L    GD + +R      W   E  +GK G  P  Y+E+  
Sbjct: 3   AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYH 60

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 314 PYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-----KAGWFPFGYIE 359
           PY+++ + +L       ++V  V +  W  GE +        G FP  ++ 
Sbjct: 15  PYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Length = 224

 Score = 48.6 bits (115), Expect = 8e-07
 Identities = 23/149 (15%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165
            L +        +  + K    LL A+   V+  +  +V    ++D     ++Y+  R E
Sbjct: 60  ELQEEFGYNAETQKLLCKNGETLLGAVNFFVSS-INTLVTKT-MEDTLMTVKQYEAARLE 117

Query: 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQ 225
            +A   ++     ++   P +     +L++A+      +     L  + A  +  +E  +
Sbjct: 118 YDAYRTDLE----ELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENK 173

Query: 226 QRLTLQRLIAMVEAERTYHQRVLQILDQL 254
            ++  ++L+    A   Y     + L+Q 
Sbjct: 174 IKVMHKQLLLFHNAVSAYFAGNQKQLEQT 202

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAESDV-ELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
            + PY    D  E++   GD  +V     +GW         + G      +E
Sbjct: 12  AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIERRDRVLASKMA 370
           + Y+A ++ +L+   G+   +   +   W  A     G+ G+ P  Y+   DR+      
Sbjct: 12  YDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYKDDD 71

Query: 371 E 371
           +
Sbjct: 72  D 72

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 294 SQTHNGSTDAMGYFLGEVVHPYQAESDV-ELTLSVGDYVVVRKVTNNGWAEGECKG---- 348
              H+      G      +  +    D   L +  GD + V +   +G  +G        
Sbjct: 6   HHHHSSGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRG 65

Query: 349 --KAGWFPFGYIE 359
             + G+FP G +E
Sbjct: 66  TDRIGYFPPGIVE 78

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIE 359
           VV+ Y+A    ELT+   + + V+       W +     G+ G+ P  Y++
Sbjct: 18  VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQ 68

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 3/56 (5%)

Query: 312 VHPYQAESDVELTLSVGD-YVVVRKVTNNGW--AEGECKGKAGWFPFGYIERRDRV 364
              +      EL    GD   ++    N  W   +    G+ G    G +  R   
Sbjct: 23  KCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSGP 78

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 310 EVV--HPYQAESDVELTLSVGD-YVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           E +  + ++A +D EL+   GD   V+ +  +  W + E  GK G+ P  YIE 
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 55

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR 363
             +  + D EL    GD++ V   ++  W +G C G+ G FP  Y+   +R
Sbjct: 165 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 2/137 (1%)

Query: 232 RLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGI 291
            + +                      +    Q  ++ P                 E    
Sbjct: 63  IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 122

Query: 292 YASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKA 350
               +          ++   +  +    + +L    GD + +R      W   E  +GK 
Sbjct: 123 SRQGSGVILRQEEAEYV-RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 181

Query: 351 GWFPFGYIERRDRVLAS 367
           G  P  Y+E+     AS
Sbjct: 182 GMIPVPYVEKYRPASAS 198

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 27/99 (27%)

Query: 267 AAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLS 326
                      +M   PA      ++                      Y+A  D ELTL 
Sbjct: 11  VDLGTENLYFQSMGTTPAGPVWTAVF---------------------DYEAAGDEELTLR 49

Query: 327 VGDYVVV-----RKVTNNGWAEGECK-GKAGWFPFGYIE 359
            GD V V         + GW  G+   G+ G FP  Y+ 
Sbjct: 50  RGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 310 EVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIER 360
                     + EL L+ G Y+ V   +  +G+ EGE   G+ G  P  +++ 
Sbjct: 27  NPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDF 79

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAE-SDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIE 359
           V++ + AE  + ELT++ G+ + V       GW EG+  KG+ G  P  Y+E
Sbjct: 14  VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVE 65

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRD 362
           G  ++ +Q     +L+L +GD V +++ T   W  G     K   G FP  +I  ++
Sbjct: 20  GVAIYNFQGSGAPQLSLQIGDVVRIQE-TCGDWYRGYLIKHKMLQGIFPKSFIHIKE 75

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 23/95 (24%)

Query: 269 PTAPTPSVDTMPPPPAYEE-VNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSV 327
           P  PTP  +        E  V  +Y                      YQ     EL L  
Sbjct: 3   PLPPTPEDNRRSFQEPEETLVIALY---------------------DYQTNDPQELALRC 41

Query: 328 GDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERR 361
            +   +   +   W   + K G  G+ P  Y+  +
Sbjct: 42  DEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK 76

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Length = 256

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 26/185 (14%)

Query: 88  LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA 147
           L+E   K+G +           A    G A  ++ + + +L   +     +PL+ +    
Sbjct: 93  LAEAMLKFGRE--LGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNL-HDK 149

Query: 148 PLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 207
            L + +H  ++ +  R +   +     K                     + +L       
Sbjct: 150 DLREIQHHLKKLEGRRLDFGYKKKRQGKI-------------------PDEELRQALEKF 190

Query: 208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEA 267
               + A ++M  +        + +L A+V+A+  YH++ +QIL Q+   +    +RI  
Sbjct: 191 DESKEIAESSMFNLLEMDIEQ-VSQLSALVQAQLEYHKQAVQILQQVTVRL---EERIRQ 246

Query: 268 APTAP 272
           A + P
Sbjct: 247 ASSQP 251

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 283 PAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWA 342
             + + +  + S                 ++ +Q  +  E+ +  GD + V     +G++
Sbjct: 419 TLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYS 478

Query: 343 EGECK--GKAGWFPFGYIERR 361
           +G  +  G+ G +P   +  +
Sbjct: 479 KGVNRKLGRTGLYPSYKVREK 499

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 19/81 (23%), Positives = 24/81 (29%)

Query: 283 PAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWA 342
             Y    G       N           E +  +    D EL    GD + V   TN  W 
Sbjct: 7   HHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWW 66

Query: 343 EGECKGKAGWFPFGYIERRDR 363
            G      GWFP  ++  R  
Sbjct: 67  WGRVADGEGWFPASFVRLRVN 87

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 290 GIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGD--YVVVRKVTNN--GWAEGE 345
           G   S   N ++    + +    + + A SD E++   GD   + +++      GW    
Sbjct: 1   GSSGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS 60

Query: 346 CKGKA-GWFPFGYIE 359
             G+  G  P  Y++
Sbjct: 61  LDGQTTGLIPANYVK 75

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIERRD 362
           + Y+A ++ +L+   G+   +   +   W  A     G+ G+ P  Y+   D
Sbjct: 22  YDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAESDV-ELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
            + PY    D  E++   GD  +V     +GW         + G      +E
Sbjct: 10  AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 43.1 bits (101), Expect = 6e-06
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 17/70 (24%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVT---------------NNGWAEG--ECKGKAGWFP 354
           ++ Y+ E + ++ L +GD + V K +                 GW  G  E  G+ G FP
Sbjct: 11  LYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFP 70

Query: 355 FGYIERRDRV 364
             Y+E   R 
Sbjct: 71  GTYVEYIGRK 80

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 42.2 bits (100), Expect = 8e-06
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 313 HPYQAESDVELTLSVGD-YVVVRKVTNNGWAEGECK-GKAGWFPFGYIERRDRV 364
           + +   ++ +L    GD   +V    +  W + + K G+ G  P  Y+++R+ V
Sbjct: 18  YNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV 71

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 46.3 bits (108), Expect = 9e-06
 Identities = 35/249 (14%), Positives = 79/249 (31%), Gaps = 9/249 (3%)

Query: 120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK 179
           Q E++R    + +  +V + L    +         L Q         + +    +     
Sbjct: 235 QFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGM 294

Query: 180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEA 239
               P   + +  L+    +    K+   +               +   TL       ++
Sbjct: 295 AMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNPAQS 354

Query: 240 ERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNG 299
            ++         +   G  +SE+   +A   +      + P   + +E N  ++S   NG
Sbjct: 355 AQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSSTDANG 414

Query: 300 STDAMGYF-------LGEVVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECK-GKA 350
            ++                ++ Y+ +   EL+   GD +  +      GW +G    G+ 
Sbjct: 415 DSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQV 474

Query: 351 GWFPFGYIE 359
           G +P  Y+E
Sbjct: 475 GLYPANYVE 483

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Length = 240

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 24/174 (13%)

Query: 99  NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR 158
                 +T   A +  G +   M + + +L   +     +PL+ +     L +  H  ++
Sbjct: 86  KELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLL-QDKDLKEIGHHLKK 144

Query: 159 YDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAM 218
            +  R + + +   V K                     + ++           + A  +M
Sbjct: 145 LEGRRLDYDYKKKRVGK-------------------IPDEEVRQAVEKFEESKELAERSM 185

Query: 219 AAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAP 272
                      + +L   +EA   YH++  +IL +L+ ++   + RI AA + P
Sbjct: 186 FNFLENDVEQ-VSQLAVFIEAALDYHRQSTEILQELQSKL---QMRISAASSVP 235

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 269 PTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVG 328
           P  P P  +++      + +                   +      Y A+ D EL +   
Sbjct: 7   PPVPNPDYNSLKKGSLVKNL-------------HMTEEVIVIAKWDYTAQQDQELDIKKN 53

Query: 329 DYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 361
           + + +   +   W       + G+ P  Y+ER+
Sbjct: 54  ERLWLLDDSKTWWRVRNAANRTGYVPSNYVERK 86

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 8/51 (15%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIE 359
            ++ ++  S+  ++++ G+ + ++ +   +GW      +G  G+ P  Y+ 
Sbjct: 12  AIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLR 62

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
           V + + AES  ELT+  GD V ++    +  W   +    GK+G  P  +IE
Sbjct: 7   VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIERRDRV 364
           + Y A    +L+   G+   + +     W  A     G+ G+ P  Y+   D +
Sbjct: 13  YDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI 66

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGW--------AEGECKGKAGWFPFGYIERRD 362
           ++ YQ +S  E+T+  GD + +   TN  W          G+   + G+ P  Y+++ D
Sbjct: 7   LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 65

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGW-----AEGECKGKAGWFPFGYIERRD 362
           +  +++ +D EL+   GD   V +     W      E       G+ P  Y+  R+
Sbjct: 16  LWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 313 HPYQAESDVELTLSVGDYVVV--RKVTNNGWAEGE-CKGKAGWFPFGYIERRDR 363
           +P+ + ++ EL    G+ + V  +   +  W + +  +G+ G  P  Y+     
Sbjct: 13  YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 66

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 313 HPYQAESDVELTLSVGD-YVVVRKVTNNGW-AEGECKGKAGWFPFGYIERRDRV 364
           + Y+A +  +L+   G+ + ++     + W A     GK+G+ P  Y+   D +
Sbjct: 34  YDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI 87

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 19/97 (19%)

Query: 267 AAPTAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLS 326
            +P   + + +T     A  E   + A                  ++ Y+A    +L+  
Sbjct: 4   GSPGPNSHNSNTPGIREAGSEDIIVVA------------------LYDYEAIHHEDLSFQ 45

Query: 327 VGDYVVVRKVTNNGW-AEGECKGKAGWFPFGYIERRD 362
            GD +VV + +   W A      K G+ P  Y+ R D
Sbjct: 46  KGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 82

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 310 EVVHPYQA------ESDVELTLSVGDYV-VVRKVTNNGWAEGE--CKGKAGWFPFGYIE 359
           EV   Y             L L+ GD V + +    + W EG      + GWFP   + 
Sbjct: 8   EVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           G   +         + +QA +  EL++   D + V   +   W   +  G+ G+ P+  +
Sbjct: 1   GPLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNIL 60

Query: 359 E 359
            
Sbjct: 61  T 61

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 24/94 (25%)

Query: 270 TAPTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGD 329
           ++ +  +           V  +Y                     P+ + ++ EL    G+
Sbjct: 2   SSGSSGLSNGQGSRVLHVVQTLY---------------------PFSSVTEEELNFEKGE 40

Query: 330 YVVV--RKVTNNGWAEGE-CKGKAGWFPFGYIER 360
            + V  +   +  W + +  +G+ G  P  Y+  
Sbjct: 41  TMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 74

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIER 360
           + Y   +  +L L  GD   + + +N  W     K G+ G+ P  Y+  
Sbjct: 15  YDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGW---------AEGECKGKAGWFPFGYIER 360
           +  YQA +  +L+   GD + V   ++ GW           G  +   G+ P  Y+  
Sbjct: 13  LFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 313 HPYQAESD--VELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           +PY A+ D   E++    + + V  +    W      G+ G  P  Y++
Sbjct: 12  YPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQ 60

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
           V + + AES  ELT+  GD V ++    +  W   +    GK+G  P  +IE
Sbjct: 11  VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 272 PTPSVDTMPPPPAYEEVNGIYASQTHNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYV 331
              S   +P    + ++  +    +   +       +      +  E + +L    G+ +
Sbjct: 85  ANQSFPDIPALLNHFKMRVLT-EASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERL 143

Query: 332 VVRKVTNNGWAEGE-CKGKAGWFPFGYIE 359
            +   TN  W E     G  G  P  Y++
Sbjct: 144 EILSKTNQDWWEARNALGTTGLVPANYVQ 172

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 314 PYQAESDVELTLSVGDYV-VVRKVTNNGWAEG--ECKGKAGWFPFGYIE 359
           P        L L+ GD V + +    + W EG      + GWFP   + 
Sbjct: 26  PPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERRD 362
           + +QA    +L L  G   ++ +  +  W     K G  G+ P  Y+  + 
Sbjct: 9   YDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW-AEGECKGKAGWFPFGYIERRDRV 364
           V+  Y +          G+ + V       W A     G+  + P   + R    
Sbjct: 22  VLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVSGP 76

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 313 HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIER 360
           + YQ     EL L   +   +   +   W   + + G  G+ P  Y+  
Sbjct: 26  YDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVE 74

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 311 VVHPYQAES-DVELTLSVGDYVVV-----RKVTNNGWAEGECK-GKAGWFPFGYIE 359
            ++ +  E+ ++E+ L  GD + +         ++ W +   K G  G+ P+ YIE
Sbjct: 12  ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 67

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 8/49 (16%), Positives = 19/49 (38%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
             + + A +  EL++   D + +       W      G +G+ P   ++
Sbjct: 6   SKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILD 54

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFP 354
           ++ Y A++D EL  S G  + V    +  W +GE  G+ G FP
Sbjct: 8   MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFP 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	373
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	99.96
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	99.96
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	99.69
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.67
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.64
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.64
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.62
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.62
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	99.62
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.62
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.61
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.61
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.6
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.6
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.6
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.6
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.6
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.6
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.59
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.59
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.59
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.59
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.59
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.59
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.59
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.58
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.58
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.58
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.58
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.58
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.58
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.58
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.58
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.57
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.57
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.57
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.57
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.57
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.57
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.57
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.57
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.57
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.57
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.57
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.56
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.56
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.56
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.56
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.56
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.56
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.56
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.56
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.56
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.56
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.56
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.56
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.56
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.56
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.56
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.56
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	99.56
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.56
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.56
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.55
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.55
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.55
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.55
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.55
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.55
3u23_A	65	CD2-associated protein; structural genomics, struc	99.55
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.55
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.55
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.55
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.55
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.55
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.54
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.54
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.54
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.54
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.54
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.54
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.54
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.54
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.54
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.53
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.53
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.53
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.53
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.53
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.53
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.53
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.53
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.53
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.53
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.52
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.52
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.52
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.52
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.52
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.52
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.52
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.52
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.52
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.52
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.52
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.52
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.51
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.51
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.51
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.51
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.51
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.51
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.51
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.51
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.51
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.51
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.51
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.51
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.5
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.5
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.5
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.5
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.5
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.5
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.5
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.5
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.5
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.5
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.5
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.5
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.5
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.5
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.5
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.5
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.49
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.49
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.49
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.49
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.49
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.49
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.49
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.49
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.49
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.49
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.48
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.48
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.48
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.48
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.48
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.48
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.47
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.47
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.47
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.47
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.46
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.46
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.45
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.45
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.45
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.45
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.45
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.44
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.43
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.43
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	99.43
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.42
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.41
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.41
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.41
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.4
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.4
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.37
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.36
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.33
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.31
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.3
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.29
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.28
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.28
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.27
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.26
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.26
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.25
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.22
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.22
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.22
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.21
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.2
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.18
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.17
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	99.17
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.13
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.71
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.08
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	99.07
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.06
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.06
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.06
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.03
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.57
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.0
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.99
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.97
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.9
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.85
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.79
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.77
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.71
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	98.57
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.53
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	98.51
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.5
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.5
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.45
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.43
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.42
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.3
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.27
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	98.26
2ykt_A	253	Brain-specific angiogenesis inhibitor 1-associate	98.2
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.19
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.11
2d1l_A	253	Metastasis suppressor protein 1; IRSP53, actin bin	98.01
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.88
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.85
3ok8_A	222	Brain-specific angiogenesis inhibitor 1-associate	97.34
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	97.16
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	96.83
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	96.67
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	96.65
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	96.58
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	96.53
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	96.35
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	96.34
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	95.9
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	95.58
3g9g_A	287	Suppressor of yeast profilin deletion; SYP1, BAR d	95.23
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	94.76
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	93.86
2kt8_A	76	Probable surface protein; SH3 family, structural g	93.83
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	92.85
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	89.03
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	88.62
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	87.81
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	85.49

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=99.96  E-value=3.6e-28  Score=229.51  Aligned_cols=229  Identities=20%  Similarity=0.265  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCC-CCCccccchHHhh-hhHHHHHHHHHhhhhhh----------HHHHHhhhhccc-cc
Q 017347           10 KLREQVARQQQAVFKQFGGGGYG-GSDNVVTDEAELH-QHQRLERLYISTRAGKH----------FQRDIVRGVEGY-IV   76 (373)
Q Consensus        10 ~~~~~~a~~~q~~~~~~~~~~~~-~~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~----------~~~~i~r~~e~~-~~   76 (373)
                      -|+.+|.|++|.|..++|++.-. .+++++..|..+. .+...++|+..+...-+          ++..|. .+.|. ..
T Consensus         5 g~kK~~~ra~q~~~ek~G~~E~Tel~~d~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~-k~~g~~k~   83 (256)
T 1zww_A            5 GLKKQFHKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMS-KIRGQEKG   83 (256)
T ss_dssp             ----------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC-------------------
T ss_pred             hHHHHHHHHHHHHHhHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHH-Hhhccccc
Confidence            47899999999999999965421 1333443344443 34444444444432100          001121 11111 11


Q ss_pred             CCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HH
Q 017347           77 TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HL  155 (373)
Q Consensus        77 ~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~  155 (373)
                      +++|+.+.  .||++|+.+|.++|  ++++||.||.+||+|+.+|+.++..|+..+.++||+||++|+++ ++++|+ + 
T Consensus        84 ~~~p~~~~--~L~~~m~~~~~~l~--~~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~-~~k~i~k~-  157 (256)
T 1zww_A           84 PGYPQAEA--LLAEAMLKFGRELG--DDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDK-DLREIQHH-  157 (256)
T ss_dssp             ---CCHHH--HHHHHHHHHHHHHC--SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-HHHHHHHH-
T ss_pred             CCCCCcHH--HHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-
Confidence            23555544  69999999999999  99999999999999999999999999999999999999999997 999988 5 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHH
Q 017347          156 AQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQR  232 (373)
Q Consensus       156 k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~  232 (373)
                             |++++++||||-..+.|.+.     ..+.+|+.|+++|+++.+.       +...|..+   +.++    +.+
T Consensus       158 -------rkkl~~~rLdyD~~k~k~~k-----~~eeEle~A~~~fe~~~e~-------~~~~m~~l~~~e~e~----~~~  214 (256)
T 1zww_A          158 -------LKKLEGRRLDFGYKKKRQGK-----IPDEELRQALEKFDESKEI-------AESSMFNLLEMDIEQ----VSQ  214 (256)
T ss_dssp             -------HHHHHHHHHHHHHHHHTTTT-----SCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTHHH----HHH
T ss_pred             -------HHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHH-------HHHHHHHHHhCcHHH----HHH
Confidence                   55599999999222222211     1367999999999999999       88888663   4555    899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhcCCCC
Q 017347          233 LIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTA  271 (373)
Q Consensus       233 L~~~veAql~Yh~q~~~iL~~L~~eL~se~~~~~s~~~~  271 (373)
                      |.+||+||++||.+|+++|.++...|..   ++..++++
T Consensus       215 L~~~v~aQl~y~~~~~e~L~~l~~~l~~---~~~~~~~~  250 (256)
T 1zww_A          215 LSALVQAQLEYHKQAVQILQQVTVRLEE---RIRQASSQ  250 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcC
Confidence            9999999999999999999999999987   46555554

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=99.96  E-value=7.2e-28  Score=225.39  Aligned_cols=206  Identities=20%  Similarity=0.307  Sum_probs=154.3

Q ss_pred             cCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccC------------------------CCCCC
Q 017347           27 GGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVT------------------------GSKQV   82 (373)
Q Consensus        27 ~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~------------------------~~~~~   82 (373)
                      ||+.+|+.+.+-.+       ..|..|=.+.+.++.|..+|.+.+.+|++|                        ++|+.
T Consensus         1 ~~Ek~G~~ekTel~-------~d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~~   73 (240)
T 2z0v_A            1 GSSGSSGAEGTKLD-------DEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQT   73 (240)
T ss_dssp             -------------C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCCH
T ss_pred             CCCCCCCCccCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCCc
Confidence            45666655533211       223344455566666666666666666553                        34444


Q ss_pred             chhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHH
Q 017347           83 EIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDR  161 (373)
Q Consensus        83 e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~  161 (373)
                      +.  .||++|+.+|.+||  ++++||.||.+||+|+.+|+.++..|+..+..+|++||++|+++ +|++|. +       
T Consensus        74 ~~--~L~~~m~~~~~~l~--~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~-d~k~i~~~-------  141 (240)
T 2z0v_A           74 EG--LLGDCMLKYGKELG--EDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDK-DLKEIGHH-------  141 (240)
T ss_dssp             HH--HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-HHHHHHHH-------
T ss_pred             HH--HHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------
Confidence            44  69999999999999  99999999999999999999999999999999999999999987 999987 5       


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Q 017347          162 MRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVE  238 (373)
Q Consensus       162 ~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~ve  238 (373)
                       |++++++||||-..+.|.+.     ..+.+|+.|+++|+++++.       +...|.++   +.++    +++|.+||+
T Consensus       142 -rKkle~~rLd~D~ak~k~~k-----~~eeEl~~A~~~fe~~~e~-------~~~~m~~~~~~~~e~----l~~l~~~v~  204 (240)
T 2z0v_A          142 -LKKLEGRRLDYDYKKKRVGK-----IPDEEVRQAVEKFEESKEL-------AERSMFNFLENDVEQ----VSQLAVFIE  204 (240)
T ss_dssp             -HHHHHHHHHHHHHHHTTTTS-----SCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHSTHHH----HHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHH-------HHHHHHHHHhCcHHH----HHHHHHHHH
Confidence             55599999999222222111     1278999999999999999       88888764   4555    999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhhhhcCCCC
Q 017347          239 AERTYHQRVLQILDQLEGEMLSERQRIEAAPTA  271 (373)
Q Consensus       239 Aql~Yh~q~~~iL~~L~~eL~se~~~~~s~~~~  271 (373)
                      ||++||++|+++|.+|...|..   ++..++++
T Consensus       205 aQl~y~~~~~e~L~~l~~~l~~---~~~~~~~~  234 (240)
T 2z0v_A          205 AALDYHRQSTEILQELQSKLQM---RISAASSV  234 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHhcC
Confidence            9999999999999999999987   45555555

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=99.69  E-value=1.1e-15  Score=142.96  Aligned_cols=216  Identities=13%  Similarity=0.171  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCccc-cchHHhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhh
Q 017347            9 TKLREQVARQQQAVFKQFGGGGYGGSDNVV-TDEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGT   86 (373)
Q Consensus         9 ~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~-~~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~   86 (373)
                      .-|+++|.|..|.|..++|++.. +.|... ..|..+. .+..+++|+..+..   |...+....           ....
T Consensus        26 ~~~~K~~~Ra~q~~~~k~G~~e~-T~D~~Fe~~~~~f~~~e~~~~~l~k~~k~---y~~~~~~~~-----------~~~~   90 (251)
T 2fic_A           26 SNVQKKLTRAQEKVLQKLGKADE-TKDEQFEQCVQNFNKQLTEGTRLQKDLRT---YLASVKAMH-----------EASK   90 (251)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----------HHHH
T ss_pred             HHHHHHHHHhhHHHHHHcCCccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----------HHHH
Confidence            34689999999999999995542 223322 1111222 23344444443332   444333222           2233


Q ss_pred             HHHHHHHH-hhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHH
Q 017347           87 KLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQ  164 (373)
Q Consensus        87 ~Lg~~m~~-~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~  164 (373)
                      .||++|.. ||.+.|      .+.++..+|++..   ....+|...+..+|++||..++.  .+++++ .+++       
T Consensus        91 ~l~~~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~d~~~~l~~~vi~Pl~~~~~--~~~~i~~~ikK-------  152 (251)
T 2fic_A           91 KLNECLQEVYEPDWP------GRDEANKIAENND---LLWMDYHQKLVDQALLTMDTYLG--QFPDIKSRIAK-------  152 (251)
T ss_dssp             HHHHHHHHHCCTTST------THHHHHHHHHHHH---HHHHHHHHHHHHHTHHHHHHHHH--THHHHHHHHHH-------
T ss_pred             HHHHHHHHHhCCCcC------CchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHH-------
Confidence            68999987 444433      4567777876654   55667777888999999999994  899988 4444       


Q ss_pred             HHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017347          165 EAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAER  241 (373)
Q Consensus       165 ~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql  241 (373)
                       .+.+||||   +.+..|.++....  .+.++..|+.+++++++.+..+++.+...|.........+...+|.+|+.+|+
T Consensus       153 -R~~k~lDyD~~~~~l~kl~~k~~k--d~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~  229 (251)
T 2fic_A          153 -RGRKLVDYDSARHHYESLQTAKKK--DEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEE  229 (251)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHhhHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             77888888   2333333222111  24578889999999999999999999999988766655555679999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHH
Q 017347          242 TYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       242 ~Yh~q~~~iL~~L~~eL~s  260 (373)
                      +||.++.+++.+|...|..
T Consensus       230 ~f~~~~~~~~~~L~~~l~~  248 (251)
T 2fic_A          230 NFHKEMSKLNQNLNDVLVG  248 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998854

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.67  E-value=4.7e-17  Score=119.83  Aligned_cols=55  Identities=29%  Similarity=0.667  Sum_probs=51.5

Q ss_pred             eEEEEeccCCCCCCCC-ccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVE-LTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~E-Lsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l  361 (373)
                      .+|+|+|||+++.++| |+|.+||+|.|+++.++|||.|++ +|+.||||+|||+.+
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            4799999999998887 999999999999999999999998 789999999999875

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.64  E-value=4.3e-16  Score=116.55  Aligned_cols=57  Identities=30%  Similarity=0.476  Sum_probs=53.2

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      ....++|+|||.+..++||+|.+||+|.|++..++|||.|++  +|+.||||+|||+.+
T Consensus         5 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            5 DLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             cCEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            345799999999999999999999999999999999999998  699999999999976

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.64  E-value=4.7e-16  Score=118.82  Aligned_cols=63  Identities=21%  Similarity=0.154  Sum_probs=57.8

Q ss_pred             CceEEEEeccCCCC--CCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          305 GYFLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       305 ~~~~~~alydf~a~--~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ....|+|+|||.+.  +++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+.+.|++
T Consensus         8 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~s   72 (73)
T 2ebp_A            8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPSS   72 (73)
T ss_dssp             CSEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCCSCC
T ss_pred             cceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCCCCC
Confidence            35679999999976  9999999999999999999999999999999999999999999877654

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.62  E-value=1.4e-15  Score=118.29  Aligned_cols=63  Identities=25%  Similarity=0.378  Sum_probs=58.0

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee--cCCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~--~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ....|+|+|||++..++||+|.+||+|.|+..  .++|||.|+++|+.||||++||+.+...|.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~s   80 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGPSS   80 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCCCCC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCCCCC
Confidence            45689999999999999999999999999998  4689999999999999999999999877765

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.8e-15  Score=117.20  Aligned_cols=62  Identities=31%  Similarity=0.561  Sum_probs=58.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+...|++
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~p~~   78 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS   78 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCCCSC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCCCCC
Confidence            35699999999999999999999999999999999999999999999999999999887764

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=99.62  E-value=9.2e-15  Score=135.73  Aligned_cols=223  Identities=14%  Similarity=0.211  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchh
Q 017347            6 KQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIG   85 (373)
Q Consensus         6 ~~~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~   85 (373)
                      +-+.-|+++|.|..|.|..++|++.     .++ |+       .||.+..+.+.+..+.++|.+.++.+++.-.......
T Consensus         8 ~~~~~~~k~~~R~~q~~~~k~G~~e-----~t~-D~-------~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~   74 (244)
T 1uru_A            8 MLAKSVQKHAGRAKEKILQNLGKVD-----RTA-DE-------IFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAAS   74 (244)
T ss_dssp             ------------------CCSSCTT-----CCH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCc-----ccC-CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456688999999999999998433     343 33       2334444444444456666666665543211112222


Q ss_pred             hHHHHHHHH-hhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHH
Q 017347           86 TKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMR  163 (373)
Q Consensus        86 ~~Lg~~m~~-~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r  163 (373)
                      ..||++|.. |+.+.+      .+.++..+   ...++.++.+|...+..+|++||+.++.  .+++++ .+++      
T Consensus        75 ~~l~~~~~~l~~~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~vi~Pl~~~~~--~~~~i~~~ikK------  137 (244)
T 1uru_A           75 KTLMDSVCEIYEPQWS------GYDALQAQ---TGASESLWADFAHKLGDQVLIPLNTYTG--QFPEMKKKVEK------  137 (244)
T ss_dssp             HHHHHHHHHHSCTTST------THHHHHHH---HHHHHHHHHHHHHHHHTTTHHHHHHHHH--HHHHHHHHHHH------
T ss_pred             HHHHHHHHHHhCCCCC------CchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH------
Confidence            368899988 443332      22344444   4458889999999999999999999994  899988 5444      


Q ss_pred             HHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017347          164 QEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE  240 (373)
Q Consensus       164 ~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAq  240 (373)
                        .+.+||||   +.+..|.++.+.....+.++..|+.+++++++.+..+++.+...|.........+...+|.+|+.+|
T Consensus       138 --R~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q  215 (244)
T 1uru_A          138 --RNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATE  215 (244)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence              66677777   2222222211100011236777778888888888888888888888776655555677999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHH
Q 017347          241 RTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       241 l~Yh~q~~~iL~~L~~eL~s  260 (373)
                      ..||.++..++..|...+..
T Consensus       216 ~~~~~~~~~~~~~l~~~~~~  235 (244)
T 1uru_A          216 QVFHNETAKIYSELEAIVDK  235 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888777655

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.62  E-value=3.9e-16  Score=121.27  Aligned_cols=62  Identities=23%  Similarity=0.491  Sum_probs=58.1

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.++|.
T Consensus        17 ~~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~~p~   78 (79)
T 1z9q_A           17 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPE   78 (79)
T ss_dssp             SCCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSCCCC
T ss_pred             CceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCCCCC
Confidence            34569999999999999999999999999999999999999999999999999999988775

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.9e-15  Score=118.43  Aligned_cols=59  Identities=32%  Similarity=0.510  Sum_probs=54.4

Q ss_pred             CceEEEEeccCCCC--CCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~--~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||.+.  +++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+
T Consensus        15 ~~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   75 (88)
T 2dbk_A           15 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP   75 (88)
T ss_dssp             CCEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCS
T ss_pred             CCEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCC
Confidence            45689999999954  999999999999999999999999999999999999999999854

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=4.1e-15  Score=114.89  Aligned_cols=60  Identities=27%  Similarity=0.429  Sum_probs=55.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           16 YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             CSEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSSS
T ss_pred             cCEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCCC
Confidence            346799999999999999999999999999999999999999999999999999988654

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.8e-15  Score=114.27  Aligned_cols=63  Identities=25%  Similarity=0.443  Sum_probs=57.6

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee---cCCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV---TNNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~---~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+..   .++|||.|+++|+.||||++||+.+.+.|.+
T Consensus         7 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   72 (73)
T 2dl7_A            7 GVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPSS   72 (73)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSSCCC
T ss_pred             CCEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCCCCC
Confidence            35679999999999999999999999999998   4789999999999999999999999877654

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.60  E-value=1.7e-15  Score=113.58  Aligned_cols=60  Identities=30%  Similarity=0.459  Sum_probs=55.0

Q ss_pred             eEEEEeccCCCC--CCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          307 FLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       307 ~~~~alydf~a~--~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ..|+|+|+|.+.  ++++|+|.+||+|.|+...++|||.|.++|+.||||++||+.+.+..+
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~   63 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP   63 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCSCC-
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCCcCc
Confidence            469999999998  999999999999999999999999999999999999999999865443

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.60  E-value=2.1e-15  Score=114.06  Aligned_cols=60  Identities=33%  Similarity=0.577  Sum_probs=55.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ..|+|+|||++..++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+.+.|+
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~~~   64 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEH   64 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSCCC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCCcc
Confidence            5799999999999999999999999999985  88999999999999999999999876654

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.60  E-value=3.2e-15  Score=112.29  Aligned_cols=60  Identities=22%  Similarity=0.420  Sum_probs=56.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|||.+.+++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISGPS   66 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCSCC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCCCC
Confidence            457999999999999999999999999999999999999999999999999999887654

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.60  E-value=2e-15  Score=115.18  Aligned_cols=61  Identities=23%  Similarity=0.482  Sum_probs=57.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ....|+|+|||++..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.++|
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~p   72 (73)
T 3c0c_A           12 DQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPLP   72 (73)
T ss_dssp             CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             CCeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCCCC
Confidence            3467999999999999999999999999999999999999999999999999999998887

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=3.3e-15  Score=112.31  Aligned_cols=59  Identities=27%  Similarity=0.385  Sum_probs=55.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|.++|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCCS
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCCC
Confidence            45799999999999999999999999999999999999999999999999999988653

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.59  E-value=1.9e-15  Score=113.38  Aligned_cols=57  Identities=35%  Similarity=0.586  Sum_probs=53.5

Q ss_pred             ceEEEEeccCCCC--CCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~--~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+.  ++++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus         6 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   64 (67)
T 2eyx_A            6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLD   64 (67)
T ss_dssp             SCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBC
T ss_pred             CEEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcC
Confidence            4579999999999  89999999999999999999999999999999999999999874

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.59  E-value=2.3e-15  Score=113.41  Aligned_cols=59  Identities=24%  Similarity=0.472  Sum_probs=54.6

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      .+.|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC-
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCcc
Confidence            35799999999999999999999999999999999999999999999999999987654

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.59  E-value=2.4e-15  Score=114.67  Aligned_cols=62  Identities=24%  Similarity=0.455  Sum_probs=58.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.++|.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   68 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS   68 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSCCSCC
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccCCCCC
Confidence            45799999999999999999999999999998999999999999999999999999887765

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=4.4e-15  Score=112.88  Aligned_cols=60  Identities=22%  Similarity=0.380  Sum_probs=56.0

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A            8 EPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             SCEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSS
T ss_pred             CCEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCC
Confidence            456899999999999999999999999999998899999999999999999999988654

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.59  E-value=2e-15  Score=109.89  Aligned_cols=55  Identities=27%  Similarity=0.453  Sum_probs=52.0

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC--CeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~--g~~G~fP~~Yve~l  361 (373)
                      +.|+|+|||.+..++||+|.+||+|.|++..++|||.|++.  |+.||||++||+.+
T Consensus         1 p~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            35899999999999999999999999999999999999996  99999999999876

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.59  E-value=2.5e-15  Score=112.28  Aligned_cols=59  Identities=36%  Similarity=0.546  Sum_probs=54.3

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ..|+|+|||.+.++++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+...+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~   60 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLEH   60 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCCC-
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCCCC
Confidence            36899999999999999999999999999999999999999999999999999876443

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.59  E-value=3.3e-15  Score=109.47  Aligned_cols=56  Identities=27%  Similarity=0.506  Sum_probs=52.9

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ...|+|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            45799999999999999999999999999999999999999999999999999864

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.58  E-value=2.4e-15  Score=110.99  Aligned_cols=58  Identities=34%  Similarity=0.521  Sum_probs=52.7

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEee-cCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~-~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      .|+|+|||.+.++++|+|.+||+|.|+.. .++|||.|+++|+.||||++||+.+.+.|
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   61 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET   61 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC---
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCCC
Confidence            58999999999999999999999999999 78999999999999999999999886543

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4e-15  Score=111.87  Aligned_cols=60  Identities=17%  Similarity=0.385  Sum_probs=55.7

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGPS   66 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCCC
Confidence            357999999999999999999999999999989999999999999999999999986543

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.58  E-value=2.6e-15  Score=109.23  Aligned_cols=55  Identities=35%  Similarity=0.619  Sum_probs=52.5

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      .|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            5899999999999999999999999999999999999999999999999999764

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.58  E-value=3.3e-15  Score=109.52  Aligned_cols=55  Identities=25%  Similarity=0.608  Sum_probs=52.7

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            5699999999999999999999999999999999999999999999999999876

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.58  E-value=3.1e-15  Score=108.75  Aligned_cols=56  Identities=25%  Similarity=0.405  Sum_probs=52.9

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            36899999999999999999999999999999999999999999999999999764

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.58  E-value=4.5e-15  Score=110.06  Aligned_cols=57  Identities=26%  Similarity=0.485  Sum_probs=52.9

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ....|+|+|||++..++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SSEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            346799999999999999999999999999885  789999999999999999999876

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.58  E-value=4.5e-15  Score=115.28  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCC-eEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNG-WAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~g-W~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||++.+++||+|.+||+|.|+...++| ||.|+++|+.||||++||+.+.+.
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A            9 FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSC
T ss_pred             CCeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            456799999999999999999999999999998777 999999999999999999998653

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=7.6e-15  Score=115.99  Aligned_cols=60  Identities=22%  Similarity=0.371  Sum_probs=55.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||++..++||+|.+||+|.|+...++|||.|++.|+.||||.+||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNI   75 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSSC
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCc
Confidence            456899999999999999999999999999998999999999999999999999987554

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.57  E-value=1.8e-15  Score=113.07  Aligned_cols=58  Identities=26%  Similarity=0.505  Sum_probs=54.2

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ..|+|+|||.+.+++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCCC
Confidence            4689999999999999999999999999999999999999999999999999987543

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=2.7e-15  Score=113.38  Aligned_cols=63  Identities=29%  Similarity=0.465  Sum_probs=57.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ....|+|+|||++..++||+|.+||+|.|+...++|||.|++.|+.||||++||+.+...|++
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~s   69 (70)
T 2ega_A            7 GLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSS   69 (70)
T ss_dssp             CCBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCCCCC
T ss_pred             CCcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCCCCC
Confidence            345699999999999999999999999999999999999999999999999999998776654

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.57  E-value=3e-15  Score=110.35  Aligned_cols=57  Identities=33%  Similarity=0.546  Sum_probs=53.6

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            357999999999999999999999999999999999999999999999999998764

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.57  E-value=4.4e-15  Score=114.09  Aligned_cols=61  Identities=23%  Similarity=0.369  Sum_probs=55.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCC---eeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG---KAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g---~~G~fP~~Yve~l~~~p  365 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|++.|   +.||||++||+.+....
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~~   72 (76)
T 2ed1_A            9 KVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSG   72 (76)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCCC
T ss_pred             CCeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCCC
Confidence            35689999999999999999999999999999899999999966   99999999999986643

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.57  E-value=4.9e-15  Score=109.85  Aligned_cols=58  Identities=31%  Similarity=0.672  Sum_probs=54.5

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            3579999999999999999999999999999899999999999999999999998754

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=4.6e-15  Score=115.05  Aligned_cols=59  Identities=22%  Similarity=0.439  Sum_probs=54.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecC--CCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~--~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...+  +|||.|+++|+.||||.+||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCC
Confidence            4567999999999999999999999999999875  8999999999999999999998754

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.57  E-value=5.6e-15  Score=109.73  Aligned_cols=56  Identities=32%  Similarity=0.655  Sum_probs=52.9

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|++..++|||.|+++|+.||||++||+.++
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   65 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ   65 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEECC
Confidence            46999999999999999999999999999999999999999999999999998763

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.57  E-value=7.5e-15  Score=110.17  Aligned_cols=61  Identities=31%  Similarity=0.443  Sum_probs=56.0

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ....|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...+
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2dl3_A            6 SGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSGPS   66 (68)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCSCC
T ss_pred             CCcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCCCC
Confidence            3467999999999999999999999999999989999999999999999999999886543

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.57  E-value=5.7e-15  Score=114.31  Aligned_cols=61  Identities=21%  Similarity=0.363  Sum_probs=55.7

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecC----CCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN----NGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~----~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...+    +|||.|+++|+.||||++||+.+...|.
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   77 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPS   77 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSCC
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCCCCC
Confidence            346999999999999999999999999999876    8999999999999999999999876554

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.57  E-value=2.7e-15  Score=113.04  Aligned_cols=60  Identities=23%  Similarity=0.288  Sum_probs=55.6

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec---CCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT---NNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~---~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ..|+|+|||.+..++||+|.+||+|.|+...   ++|||.|+++|+.||||++||+.+.+.+.
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   66 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYD   66 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCCCCC
Confidence            5699999999999999999999999999987   79999999999999999999999876554

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.57  E-value=5.5e-15  Score=107.37  Aligned_cols=55  Identities=20%  Similarity=0.436  Sum_probs=52.5

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            4699999999999999999999999999999999999999999999999999875

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.56  E-value=5.9e-15  Score=107.69  Aligned_cols=55  Identities=33%  Similarity=0.692  Sum_probs=52.2

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            4799999999999999999999999999999999999999999999999999864

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.56  E-value=4.5e-15  Score=108.79  Aligned_cols=56  Identities=23%  Similarity=0.369  Sum_probs=52.1

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      ....|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   60 (60)
T 2gnc_A            5 SPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV   60 (60)
T ss_dssp             -CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEC
T ss_pred             CCEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEEC
Confidence            34679999999999999999999999999999889999999999999999999973

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.56  E-value=5.7e-15  Score=107.40  Aligned_cols=55  Identities=27%  Similarity=0.557  Sum_probs=52.2

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            4699999999999999999999999999999999999999999999999999864

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.1e-14  Score=113.08  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=56.3

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ...|+|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+...++
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~   68 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQP   68 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCCCC
Confidence            4579999999999999999999999999999999999999999999999999999865543

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=8.2e-15  Score=110.04  Aligned_cols=59  Identities=19%  Similarity=0.317  Sum_probs=54.7

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCCS
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCCC
Confidence            35799999999999999999999999999999999999999999999999999987543

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.56  E-value=5.5e-15  Score=107.34  Aligned_cols=55  Identities=25%  Similarity=0.599  Sum_probs=52.6

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            5799999999999999999999999999998999999999999999999999876

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.56  E-value=4.7e-15  Score=111.51  Aligned_cols=61  Identities=18%  Similarity=0.289  Sum_probs=51.5

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCCCch
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+.. ++|||.|+. +|+.||||+|||+.+.+.|.+
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~~~~~~~   65 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERKLEHHHH   65 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC------
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEcCCCCCC
Confidence            3579999999999999999999999999998 579999996 899999999999999888865

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=9.1e-15  Score=113.21  Aligned_cols=59  Identities=29%  Similarity=0.491  Sum_probs=54.7

Q ss_pred             CCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccC
Q 017347          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~  363 (373)
                      .....|+|+|||.+..++||+|.+||+|.|+.. ++|||.|++  +|+.||||++||+.+..
T Consensus        15 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           15 GDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             SSCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CCCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            345689999999999999999999999999999 999999999  99999999999998754

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=8.5e-15  Score=113.11  Aligned_cols=62  Identities=23%  Similarity=0.331  Sum_probs=56.2

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecC-CCeEEEEeC-CeeeEecCCCeeeccCCCc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN-NGWAEGECK-GKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~-~gW~~G~~~-g~~G~fP~~Yve~l~~~p~  366 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...+ +|||.|++. |+.||||++||+.+...++
T Consensus        12 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   75 (78)
T 2dl5_A           12 YPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSSGP   75 (78)
T ss_dssp             SSEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCCCS
T ss_pred             CCcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCCCC
Confidence            4568999999999999999999999999999975 899999995 9999999999999876544

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=6.8e-15  Score=111.26  Aligned_cols=61  Identities=18%  Similarity=0.269  Sum_probs=56.0

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeec---CCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT---NNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~---~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...   ++|||.|+++|+.||||++||+.+.+.+
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (71)
T 2cre_A            6 SGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGPS   69 (71)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCST
T ss_pred             CcEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCCC
Confidence            346799999999999999999999999999987   8999999999999999999999886644

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=6.7e-15  Score=113.13  Aligned_cols=61  Identities=23%  Similarity=0.418  Sum_probs=56.1

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ....|+|+|||++..+++|+|.+||+|.|+...++|||.|+++|+.||||.+||+.+.+..
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (76)
T 2epd_A            9 GVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTE   69 (76)
T ss_dssp             CCEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSCS
T ss_pred             CCEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCCC
Confidence            3467999999999999999999999999999989999999999999999999999886543

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.56  E-value=7.1e-15  Score=110.44  Aligned_cols=57  Identities=21%  Similarity=0.421  Sum_probs=52.5

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCC-----eeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-----KAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g-----~~G~fP~~Yve~l  361 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|++.|     +.||||++||+.+
T Consensus         6 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            6 VPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SSEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CCEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            34689999999999999999999999999999999999999955     9999999999865

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=111.82  Aligned_cols=62  Identities=21%  Similarity=0.317  Sum_probs=56.4

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe----CCeeeEecCCCeeeccCCCch
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC----KGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~----~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ....|+|+|||.+. ++||+|.+||+|.|++..++|||.|++    +|+.||||++||+.+.+.|.+
T Consensus         9 ~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~~~~s   74 (75)
T 2egc_A            9 LKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPSS   74 (75)
T ss_dssp             CCEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCSCSSC
T ss_pred             CCeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCCCCCC
Confidence            45679999999999 999999999999999999999999999    479999999999999877754

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.56  E-value=8.5e-15  Score=110.74  Aligned_cols=62  Identities=29%  Similarity=0.344  Sum_probs=56.8

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEe--CCeeeEecCCCeeeccCCCch
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGEC--KGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~--~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+... ++|||.|++  +|+.||||.+||+.+.+.+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~~   70 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHT   70 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTSSCC
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCcCCC
Confidence            46799999999999999999999999999987 899999999  999999999999998765543

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=110.89  Aligned_cols=57  Identities=23%  Similarity=0.413  Sum_probs=53.1

Q ss_pred             CCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      .....|+|+|||.+..++||+|.+||+|.|+...++|||.|++.|+.||||++||+.
T Consensus        15 ~~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           15 HEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CCCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            345789999999999999999999999999999899999999999999999999974

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.56  E-value=3.2e-15  Score=112.30  Aligned_cols=61  Identities=33%  Similarity=0.494  Sum_probs=56.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~s   67 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGPSS   67 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSSCC
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCCCC
Confidence            3569999999999999999999999999999899999999999999999999999876543

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=99.56  E-value=2.3e-13  Score=139.06  Aligned_cols=56  Identities=23%  Similarity=0.499  Sum_probs=0.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeC-CeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECK-GKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~-g~~G~fP~~Yve~l  361 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+... ++|||.|++. |+.||||+|||+.+
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            34689999999999999999999999999887 4599999996 99999999999875

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.56  E-value=3.9e-15  Score=112.29  Aligned_cols=60  Identities=22%  Similarity=0.392  Sum_probs=55.4

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+.. ++|||.|+++|+.||||++||+.+.+.++
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   67 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPS   67 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCCC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCCCCC
Confidence            4579999999999999999999999999998 78999999999999999999999876654

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.56  E-value=8e-15  Score=110.95  Aligned_cols=62  Identities=18%  Similarity=0.346  Sum_probs=56.6

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEee--cCCCeEEEE-eCCeeeEecCCCeeeccCCCch
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGE-CKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~--~~~gW~~G~-~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+..  .++|||.|+ .+|+.||||++||+.+.+.|++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   70 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL   70 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCCC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCCCCC
Confidence            4579999999999999999999999999998  688999998 5999999999999999876653

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=110.58  Aligned_cols=59  Identities=34%  Similarity=0.587  Sum_probs=54.6

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||.+..+++|+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+.+
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A            8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             SCEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             CccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCc
Confidence            346899999999999999999999999999985  89999999999999999999998754

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=113.24  Aligned_cols=60  Identities=23%  Similarity=0.443  Sum_probs=55.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||++..+++|+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSCC
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCCc
Confidence            456899999999999999999999999999999999999999999999999999998543

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.55  E-value=9.7e-15  Score=106.03  Aligned_cols=55  Identities=35%  Similarity=0.681  Sum_probs=52.3

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||++..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            5699999999999999999999999999999999999999999999999999864

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.55  E-value=7.9e-15  Score=111.05  Aligned_cols=58  Identities=29%  Similarity=0.579  Sum_probs=54.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|++..++|||.|+++|+.||||++||+.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECCC
Confidence            4579999999999999999999999999999999999999999999999999998743

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.55  E-value=9.5e-15  Score=110.31  Aligned_cols=61  Identities=33%  Similarity=0.542  Sum_probs=55.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+...+
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~   68 (70)
T 2da9_A            6 SGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSGPS   68 (70)
T ss_dssp             SSEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCCCC
T ss_pred             CCcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCCCC
Confidence            346799999999999999999999999999985  8899999999999999999999886543

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.55  E-value=8.4e-15  Score=107.19  Aligned_cols=55  Identities=25%  Similarity=0.506  Sum_probs=51.6

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..++||+|.+||+|.|++..  ++|||.|+++|+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            5799999999999999999999999999986  789999999999999999999864

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.55  E-value=7.3e-15  Score=108.92  Aligned_cols=57  Identities=26%  Similarity=0.526  Sum_probs=53.3

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|++..++|||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            457999999999999999999999999999999999999999999999999999864

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=109.73  Aligned_cols=59  Identities=29%  Similarity=0.393  Sum_probs=54.9

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|||++..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSGP   66 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCCS
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            45799999999999999999999999999999999999999999999999999987543

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.55  E-value=1.2e-14  Score=112.14  Aligned_cols=60  Identities=22%  Similarity=0.366  Sum_probs=55.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...+++||.|+++|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            6 SGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCC
T ss_pred             CceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCc
Confidence            346799999999999999999999999999999999999999999999999999988643

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.55  E-value=9.7e-15  Score=107.31  Aligned_cols=56  Identities=32%  Similarity=0.500  Sum_probs=53.2

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|++..++|||.|+++|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            45799999999999999999999999999999999999999999999999999876

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=108.71  Aligned_cols=59  Identities=19%  Similarity=0.450  Sum_probs=54.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             CSEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECCC
T ss_pred             CcEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            34679999999999999999999999999999899999999999999999999998743

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.55  E-value=1.3e-14  Score=115.16  Aligned_cols=62  Identities=18%  Similarity=0.340  Sum_probs=55.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee--cCCCeEEEE-eCCeeeEecCCCeeeccCCCc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGE-CKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~--~~~gW~~G~-~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ....|+|+|||++..++||+|.+||+|.|+..  .++|||.|+ ++|+.||||.+||+.+...++
T Consensus        16 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   80 (91)
T 1wx6_A           16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   80 (91)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEESSS
T ss_pred             ccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCcCC
Confidence            45689999999999999999999999999998  688999999 599999999999999865443

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.54  E-value=8.8e-15  Score=117.62  Aligned_cols=61  Identities=25%  Similarity=0.428  Sum_probs=55.3

Q ss_pred             CCceEEEEeccCCCCC------CCCccCCCCCEEEEE-eecCCCeEEEEe-CCeeeEecCCCeeeccCC
Q 017347          304 MGYFLGEVVHPYQAES------DVELTLSVGDYVVVR-KVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       304 ~~~~~~~alydf~a~~------~~ELsl~~gd~I~V~-~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~  364 (373)
                      .....|+|+|||++..      ++||+|.+||+|.|+ ...++|||.|++ +|+.||||+|||+.+...
T Consensus        15 ~~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~   83 (96)
T 1wie_A           15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             SCEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CCCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCC
Confidence            3457899999999988      999999999999999 778999999999 999999999999987543

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.54  E-value=1.2e-14  Score=105.37  Aligned_cols=55  Identities=35%  Similarity=0.677  Sum_probs=52.1

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|++..++|||.|..+|+.||||++||+..
T Consensus         2 ~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEE   56 (58)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEEC
Confidence            3689999999999999999999999999999999999999999999999999865

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.54  E-value=1.1e-14  Score=110.68  Aligned_cols=57  Identities=21%  Similarity=0.445  Sum_probs=53.4

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|++  +|+.||||.+||+.+
T Consensus        14 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TTCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            346799999999999999999999999999999999999999  899999999999876

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.4e-14  Score=110.60  Aligned_cols=60  Identities=25%  Similarity=0.394  Sum_probs=55.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC--CeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~--g~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|||.+.+++||+|.+||+|.|+...++|||.|++.  |+.||||++||+.+.+.+
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~~   66 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPEL   66 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSSC
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCCC
Confidence            367999999999999999999999999999999999999994  899999999999986543

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.54  E-value=8.6e-15  Score=110.93  Aligned_cols=60  Identities=22%  Similarity=0.275  Sum_probs=53.4

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE--eCCeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~--~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+...+
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~~   67 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEP   67 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC---
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCCC
Confidence            3569999999999999999999999999999999999999  58999999999999886543

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.54  E-value=1.2e-14  Score=108.17  Aligned_cols=57  Identities=18%  Similarity=0.272  Sum_probs=52.9

Q ss_pred             ceEEEEeccCCC-CCCCCccCCCCCEEEEEeecCCCeEEEE--eCCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQA-ESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a-~~~~ELsl~~gd~I~V~~~~~~gW~~G~--~~g~~G~fP~~Yve~l~  362 (373)
                      ...++|+|||.+ ..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+.
T Consensus         5 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             TCEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CcEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            357999999999 9999999999999999999999999999  48999999999999764

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.54  E-value=6.4e-15  Score=112.07  Aligned_cols=59  Identities=27%  Similarity=0.448  Sum_probs=53.8

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEee-cCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~-~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+.. .++|||.|+++|+.||||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            3579999999999999999999999998884 6889999999999999999999988654

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=113.73  Aligned_cols=59  Identities=22%  Similarity=0.407  Sum_probs=54.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee--cCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~--~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+..  .++|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   67 (85)
T 2dlp_A            7 GSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA   67 (85)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCC
T ss_pred             CCEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCC
Confidence            45679999999999999999999999999987  889999999999999999999998754

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.54  E-value=1.3e-14  Score=113.76  Aligned_cols=60  Identities=27%  Similarity=0.447  Sum_probs=55.0

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|.++|+.||||++||+.+.+.
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           16 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             -CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCTT
T ss_pred             CceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCCC
Confidence            346799999999999999999999999999998999999999999999999999988543

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.53  E-value=1.3e-14  Score=110.30  Aligned_cols=60  Identities=27%  Similarity=0.427  Sum_probs=55.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   64 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ   64 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC--
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCCC
Confidence            457999999999999999999999999999999999999999999999999999987644

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=109.87  Aligned_cols=59  Identities=27%  Similarity=0.410  Sum_probs=55.2

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ...++|+|||.+..++||+|.+||+|.|+...++|||.|++.|+.||||.+||+.+.+.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDS   66 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCCC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccCC
Confidence            46799999999999999999999999999998999999999999999999999998653

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.53  E-value=1.2e-14  Score=107.14  Aligned_cols=56  Identities=23%  Similarity=0.319  Sum_probs=52.1

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE--eCCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~--~~g~~G~fP~~Yve~l~  362 (373)
                      ..|+|+|+|.+..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            468999999999999999999999999999999999999  48999999999998763

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=115.16  Aligned_cols=59  Identities=24%  Similarity=0.518  Sum_probs=54.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC--CeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~--g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||++..++||+|.+||+|.|+...++|||.|++.  |+.||||.+||+.+..
T Consensus        16 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~   76 (90)
T 2yup_A           16 EYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSRE   76 (90)
T ss_dssp             GSEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEEC
T ss_pred             cceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            4568999999999999999999999999999989999999996  9999999999998754

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=2.6e-14  Score=112.97  Aligned_cols=60  Identities=32%  Similarity=0.596  Sum_probs=56.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+.+.|
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~   76 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSP   76 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCCC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCcc
Confidence            467999999999999999999999999999999999999999999999999999986554

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.53  E-value=1.2e-14  Score=109.99  Aligned_cols=57  Identities=16%  Similarity=0.388  Sum_probs=51.4

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEe-ecCCCeEEEE-eCCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRK-VTNNGWAEGE-CKGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~-~~~~gW~~G~-~~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+. ..++|||.|+ .+|+.||||++||+.+.
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC--
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEcc
Confidence            357999999999999999999999999999 6789999999 59999999999998764

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.53  E-value=1.1e-14  Score=108.58  Aligned_cols=57  Identities=21%  Similarity=0.487  Sum_probs=52.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE-eCCeeeEecCCCeeeccC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~-~~g~~G~fP~~Yve~l~~  363 (373)
                      ..|+|+|||.+..++||+|.+||+|.|++..++|||.|+ .+|+.||||++||+...+
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC-
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCC
Confidence            579999999999999999999999999999999999999 599999999999988654

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.53  E-value=1.7e-14  Score=108.06  Aligned_cols=55  Identities=18%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|+|.+..+++|+|.+||+|.|+...++|||.|++ +|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            4689999999999999999999999999999999999995 999999999999987

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.53  E-value=2.5e-14  Score=113.83  Aligned_cols=65  Identities=20%  Similarity=0.385  Sum_probs=56.1

Q ss_pred             CCceEEEEeccCCCCCCC-CccCCCCCEEEEEeecCC-----CeEEEEe-CCeeeEecCCCeeeccCCCchh
Q 017347          304 MGYFLGEVVHPYQAESDV-ELTLSVGDYVVVRKVTNN-----GWAEGEC-KGKAGWFPFGYIERRDRVLASK  368 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~-ELsl~~gd~I~V~~~~~~-----gW~~G~~-~g~~G~fP~~Yve~l~~~p~~~  368 (373)
                      .....|+|+|||.+.+++ +|+|.+||+|.|+...++     |||.|++ +|+.||||++||+.+...++..
T Consensus        12 ~~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~~~~~   83 (92)
T 1jqq_A           12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRKKIE   83 (92)
T ss_dssp             TTCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC----
T ss_pred             CcCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCCCCCc
Confidence            345789999999999999 999999999999999876     9999999 8999999999999987655443

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.53  E-value=1.8e-14  Score=105.79  Aligned_cols=56  Identities=27%  Similarity=0.526  Sum_probs=52.3

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeee-EecCCCeeecc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAG-WFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G-~fP~~Yve~l~  362 (373)
                      ..|+|+|||.+..++||+|.+||+|.|+...++|||.|++.|..| |||++||+.+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            459999999999999999999999999999999999999998887 99999999764

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.9e-14  Score=110.29  Aligned_cols=57  Identities=23%  Similarity=0.330  Sum_probs=52.7

Q ss_pred             CceEEEEeccCCCCC-------CCCccCCCCCEEEEEe-ecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAES-------DVELTLSVGDYVVVRK-VTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~-------~~ELsl~~gd~I~V~~-~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ....|+|+|||++..       +++|+|.+||+|.|+. ..++|||.|+++|+.||||++||+.+
T Consensus         6 ~~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~   70 (75)
T 2ege_A            6 SGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHM   70 (75)
T ss_dssp             CSEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEEC
T ss_pred             CCcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEc
Confidence            346799999999999       9999999999999997 57899999999999999999999986

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.52  E-value=2.1e-14  Score=104.37  Aligned_cols=54  Identities=20%  Similarity=0.507  Sum_probs=51.5

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            579999999999999999999999999999999999999999999999999974

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.52  E-value=1.3e-14  Score=105.04  Aligned_cols=55  Identities=22%  Similarity=0.498  Sum_probs=50.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE-eCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~-~~g~~G~fP~~Yve~l  361 (373)
                      ..++|+|||.+..+++|+|.+||+|.|++..++|||.|+ .+|+.||||++||+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            368999999999999999999999999999999999999 5999999999999853

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.52  E-value=1.6e-14  Score=109.72  Aligned_cols=60  Identities=23%  Similarity=0.426  Sum_probs=54.2

Q ss_pred             CceEEEEeccCCC-CCCCCccCCCCCEEEEEee-cCCCeEEEEeC--CeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQA-ESDVELTLSVGDYVVVRKV-TNNGWAEGECK--GKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a-~~~~ELsl~~gd~I~V~~~-~~~gW~~G~~~--g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+ ..++||+|.+||+|.|+.. .++|||.|++.  |+.||||++||+.+...
T Consensus         6 ~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             CceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCCC
Confidence            3467999999996 8999999999999999987 78999999996  99999999999988643

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.5e-14  Score=103.66  Aligned_cols=52  Identities=35%  Similarity=0.732  Sum_probs=49.3

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecC-CCeEEEEeCCeeeEecCCCee
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTN-NGWAEGECKGKAGWFPFGYIE  359 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~-~gW~~G~~~g~~G~fP~~Yve  359 (373)
                      .|+|+|||++..+++|+|.+||+|.|+...+ +|||.|+++|+.||||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            5899999999999999999999999999985 799999999999999999985

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.52  E-value=2e-14  Score=105.97  Aligned_cols=55  Identities=24%  Similarity=0.422  Sum_probs=52.2

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|++.|+.||||++||+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEE
Confidence            3579999999999999999999999999999999999999999999999999985

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.52  E-value=2.1e-14  Score=104.89  Aligned_cols=55  Identities=33%  Similarity=0.419  Sum_probs=51.5

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEee-cCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~-~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|++. .++|||.|++  +|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            579999999999999999999999999998 4899999999  999999999999864

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.52  E-value=1.8e-14  Score=110.61  Aligned_cols=58  Identities=28%  Similarity=0.663  Sum_probs=54.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ....|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||.+||+.+.
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (76)
T 1ujy_A            9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIK   66 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECC
T ss_pred             CCEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECC
Confidence            4467999999999999999999999999999989999999999999999999999875

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.52  E-value=1.4e-14  Score=112.14  Aligned_cols=60  Identities=22%  Similarity=0.442  Sum_probs=53.5

Q ss_pred             CceEEEEeccCCCCCCC-CccCCCCCEEEEEeecCC-----CeEEEEe-CCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDV-ELTLSVGDYVVVRKVTNN-----GWAEGEC-KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~-ELsl~~gd~I~V~~~~~~-----gW~~G~~-~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..++ +|+|.+||+|.|+...++     |||.|++ +|+.||||++||+.+.+.
T Consensus        13 ~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   79 (80)
T 2v1r_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (80)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC---
T ss_pred             cCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCCC
Confidence            45689999999999999 999999999999999876     9999999 899999999999987643

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=110.17  Aligned_cols=59  Identities=34%  Similarity=0.557  Sum_probs=55.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSN   65 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSC
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCC
Confidence            46799999999999999999999999999998999999999999999999999987543

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.52  E-value=1.9e-14  Score=108.34  Aligned_cols=59  Identities=22%  Similarity=0.349  Sum_probs=53.8

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCee-eEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-GWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~-G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|||++..++||+|.+||+|.|+...++|||.|++.+.. ||||++||+.+.+.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECccC
Confidence            457999999999999999999999999999989999999997766 99999999988654

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.51  E-value=1.4e-14  Score=113.41  Aligned_cols=59  Identities=20%  Similarity=0.395  Sum_probs=53.5

Q ss_pred             CCceEEEEeccC-CCCCCCCccCCCCCEEEEEeecCCCeEEEEeC------CeeeEecCCCeeecc
Q 017347          304 MGYFLGEVVHPY-QAESDVELTLSVGDYVVVRKVTNNGWAEGECK------GKAGWFPFGYIERRD  362 (373)
Q Consensus       304 ~~~~~~~alydf-~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~------g~~G~fP~~Yve~l~  362 (373)
                      .....|+|+||| .+.+++||+|.+||+|.|+...++|||.|++.      |+.||||++||+.+.
T Consensus        16 ~~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           16 RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             -CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CCCeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            345789999999 79999999999999999999999999999984      799999999999764

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.6e-14  Score=108.93  Aligned_cols=58  Identities=31%  Similarity=0.532  Sum_probs=53.3

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...  ++|||.|+++|+.||||.+||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCC
Confidence            45799999999999999999999999999987  45999999999999999999998754

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.3e-14  Score=113.73  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             CceEEEEeccCCCC--------CCCCccCCCCCEEEEEee-cCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAE--------SDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~--------~~~ELsl~~gd~I~V~~~-~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||++.        .+++|+|.+||+|.|+.. .++|||.|+++|+.||||++||+.+..
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   83 (97)
T 2csq_A           16 PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQA   83 (97)
T ss_dssp             CCEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCC
T ss_pred             CceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCC
Confidence            35679999999998        799999999999999965 467899999999999999999998753

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.3e-14  Score=110.04  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=53.2

Q ss_pred             eEEEEeccCCC-CCCCCccCCCCCEEEEEeecCCCeEEEE--eCCeeeEecCCCeeeccC
Q 017347          307 FLGEVVHPYQA-ESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       307 ~~~~alydf~a-~~~~ELsl~~gd~I~V~~~~~~gW~~G~--~~g~~G~fP~~Yve~l~~  363 (373)
                      ..|+|+|||.+ ..++||+|.+||+|.|+...++|||.|+  .+|+.||||+|||+.+.+
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            46999999999 9999999999999999999999999999  589999999999998854

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.51  E-value=3.1e-14  Score=108.78  Aligned_cols=59  Identities=25%  Similarity=0.491  Sum_probs=53.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..+++|+|.+||+|.|+.. ++|||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (74)
T 1j3t_A            9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CCeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECCCC
Confidence            34679999999999999999999999999998 579999999999999999999988543

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.51  E-value=1.2e-14  Score=116.16  Aligned_cols=63  Identities=32%  Similarity=0.478  Sum_probs=57.5

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ....|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.+..
T Consensus        17 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~~~   79 (92)
T 2o2o_A           17 RRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDE   79 (92)
T ss_dssp             SSCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCSST
T ss_pred             CCeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCCcc
Confidence            346799999999999999999999999999998999999999999999999999998765443

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=3.2e-14  Score=106.90  Aligned_cols=59  Identities=20%  Similarity=0.279  Sum_probs=53.7

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE-eCCeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~-~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+.. ++|||.|+ .+|+.||||++||+.+...+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKNEAGRSGYIPSNILEPLSGPS   66 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEEGGGEECCCCSC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEhHHcEECCCCC
Confidence            4679999999999999999999999999999 58999999 69999999999999886543

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.51  E-value=2e-14  Score=106.65  Aligned_cols=55  Identities=29%  Similarity=0.474  Sum_probs=51.7

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC--------CeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--------GKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~--------g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|+...++|||.|++.        |+.||||++||+.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            46899999999999999999999999999999999999986        89999999999876

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.51  E-value=9.7e-14  Score=108.88  Aligned_cols=59  Identities=24%  Similarity=0.443  Sum_probs=54.2

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+... +|||.|++  +|+.||||++||+.+..+
T Consensus        24 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   84 (86)
T 2oi3_A           24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSL   84 (86)
T ss_dssp             TSEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGGC
T ss_pred             CCcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEcccC
Confidence            456899999999999999999999999999998 69999999  999999999999987544

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.51  E-value=3e-14  Score=105.00  Aligned_cols=56  Identities=20%  Similarity=0.501  Sum_probs=50.6

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE--eCCeeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~--~~g~~G~fP~~Yve~l  361 (373)
                      ....|+|+|||.+..++||+|.+||+|.|++.. +|||.|+  .+|+.||||++||+.+
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TTCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            345799999999999999999999999999985 5999999  4899999999999853

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=3.2e-14  Score=107.28  Aligned_cols=58  Identities=19%  Similarity=0.467  Sum_probs=53.3

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCC--eeeEecCCCeeeccCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIERRDRV  364 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g--~~G~fP~~Yve~l~~~  364 (373)
                      ..|+|+|||++..++||+|.+||+|.|+...++|||.|++.+  +.||||++||+.+...
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             BCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            469999999999999999999999999999889999999955  9999999999988643

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=2.3e-14  Score=108.04  Aligned_cols=59  Identities=27%  Similarity=0.426  Sum_probs=54.5

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE--eCCeeeEecCCCeeeccCCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~--~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ..|+|+|+|.+..++||+|.+||+|.|++..++|||.|+  .+|+.||||++||+.+...+
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   68 (70)
T 2cuc_A            8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGPS   68 (70)
T ss_dssp             CCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCTT
T ss_pred             cEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcCCC
Confidence            469999999999999999999999999999889999999  59999999999999886544

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.50  E-value=2.6e-14  Score=106.98  Aligned_cols=57  Identities=25%  Similarity=0.490  Sum_probs=52.3

Q ss_pred             ceEEEEeccCCC-CCCCCccCCCCCEEEEEee-cCCCeEEEEeC--CeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQA-ESDVELTLSVGDYVVVRKV-TNNGWAEGECK--GKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a-~~~~ELsl~~gd~I~V~~~-~~~gW~~G~~~--g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+ ..+++|+|.+||+|.|+.. .++|||.|++.  |+.||||++||+.+.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            467999999996 8999999999999999996 78999999996  999999999998764

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.50  E-value=2.5e-14  Score=107.05  Aligned_cols=57  Identities=26%  Similarity=0.548  Sum_probs=50.7

Q ss_pred             CceEEEEeccCCCCCCCC-ccCCCCCEEEEEee-cCCCeEEEE--eCCeeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAESDVE-LTLSVGDYVVVRKV-TNNGWAEGE--CKGKAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~E-Lsl~~gd~I~V~~~-~~~gW~~G~--~~g~~G~fP~~Yve~l  361 (373)
                      ....|+|+|||.+..+++ |+|.+||+|.|+.. .++|||.|+  ++|+.||||+|||+.+
T Consensus         6 ~~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            6 GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            345799999999988777 99999999999964 688999999  5899999999999876

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.50  E-value=3.1e-14  Score=113.65  Aligned_cols=59  Identities=29%  Similarity=0.609  Sum_probs=54.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|||++..++||+|.+||+|.|+...  ++|||.|+++|+.||||.+||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            35699999999999999999999999999986  789999999999999999999987643

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.50  E-value=2.8e-14  Score=103.87  Aligned_cols=55  Identities=25%  Similarity=0.425  Sum_probs=51.6

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC--CeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~--g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|+...++|||.|++.  |+.||||++||+.+
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            46999999999999999999999999999999999999994  89999999999876

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.50  E-value=3.2e-14  Score=103.22  Aligned_cols=54  Identities=28%  Similarity=0.555  Sum_probs=50.7

Q ss_pred             eEEEEeccC-CCCCCCCccCCCCCEEEEEeecCCCeEEEEeC--CeeeEecCCCeee
Q 017347          307 FLGEVVHPY-QAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIER  360 (373)
Q Consensus       307 ~~~~alydf-~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~--g~~G~fP~~Yve~  360 (373)
                      +.|+|+||| .+..+++|+|.+||+|.|+...++|||.|++.  |+.||||++||+.
T Consensus         1 p~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            1 PMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             CEEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            468999999 89999999999999999999999999999996  9999999999974

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.50  E-value=3e-14  Score=105.26  Aligned_cols=55  Identities=29%  Similarity=0.553  Sum_probs=51.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|+...++|||.|++  +|+.||||++||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            4699999999999999999999999999999999999999  899999999999875

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=6.6e-14  Score=108.44  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=51.8

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||++..++||+|.+||+|.|+. .+++||.|++  +|+.||||++||+.+..
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            357999999999999999999999999998 4789999998  59999999999998754

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.50  E-value=3.8e-14  Score=106.04  Aligned_cols=57  Identities=19%  Similarity=0.480  Sum_probs=53.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCC--eeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG--KAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g--~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||++.++++|+|.+||+|.|+...++|||.|++.+  +.||||++||+.+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   64 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK   64 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEE
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECC
Confidence            4579999999999999999999999999999899999999955  99999999999874

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.50  E-value=1.9e-14  Score=109.72  Aligned_cols=57  Identities=26%  Similarity=0.487  Sum_probs=53.1

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      .|+|+|||.+ +++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+.+..
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   58 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT   58 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCSSC
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCCCC
Confidence            4789999998 89999999999999999999999999999999999999999987653

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.50  E-value=3.8e-14  Score=106.63  Aligned_cols=58  Identities=26%  Similarity=0.454  Sum_probs=53.5

Q ss_pred             eEEEEeccCC-CCCCCCccCCCCCEEEEEeecCCCeEEEEeC--CeeeEecCCCeeeccCC
Q 017347          307 FLGEVVHPYQ-AESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERRDRV  364 (373)
Q Consensus       307 ~~~~alydf~-a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~--g~~G~fP~~Yve~l~~~  364 (373)
                      +.|+|+|||+ +..+++|+|.+||+|.|+...++|||.|++.  |+.||||++||+.+.+.
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   63 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT   63 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCSC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCCc
Confidence            4699999996 9999999999999999999999999999996  99999999999987643

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.50  E-value=4.3e-14  Score=104.17  Aligned_cols=57  Identities=26%  Similarity=0.447  Sum_probs=51.8

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeCCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+... +.+||.|+++|+.||||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            45799999999999999999999999999954 6679999999999999999998764

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.50  E-value=4.7e-14  Score=107.23  Aligned_cols=60  Identities=20%  Similarity=0.339  Sum_probs=54.7

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCCCc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.+.++++
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   67 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNSARA   67 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCCCCS
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCCCcc
Confidence            4579999999999999999999999999997 679999997 99999999999999876654

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.50  E-value=2.3e-14  Score=104.08  Aligned_cols=53  Identities=26%  Similarity=0.498  Sum_probs=49.9

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecC-CCeEEEEe--CCeeeEecCCCeee
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTN-NGWAEGEC--KGKAGWFPFGYIER  360 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~-~gW~~G~~--~g~~G~fP~~Yve~  360 (373)
                      .|+|+|||.+..++||+|.+||+|.|+...+ +|||.|++  +|+.||||++||+.
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   58 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   58 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEEC
Confidence            4899999999999999999999999999886 79999999  99999999999973

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.50  E-value=5.3e-14  Score=108.00  Aligned_cols=60  Identities=22%  Similarity=0.376  Sum_probs=55.5

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC---Cee------eEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK---GKA------GWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~---g~~------G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|||++..++||+|.+||+|.|+...++|||.|++.   |+.      ||||++||+.+.++.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~~~   75 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSGPS   75 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCCCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCCcC
Confidence            357999999999999999999999999999999999999996   998      999999999987654

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.50  E-value=5e-14  Score=105.87  Aligned_cols=58  Identities=17%  Similarity=0.249  Sum_probs=52.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||.+..++||+|.+||+|.|++.. +|||.|+. +|+.||||++||+.+..
T Consensus         7 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            7 ALKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CCEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            345799999999999999999999999999985 89999986 89999999999998754

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.8e-14  Score=108.86  Aligned_cols=59  Identities=24%  Similarity=0.380  Sum_probs=53.4

Q ss_pred             CceEEEEeccCCCCC-------CCCccCCCCCEEEEEeecC-CCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAES-------DVELTLSVGDYVVVRKVTN-NGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~-------~~ELsl~~gd~I~V~~~~~-~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||++..       +++|+|.+||+|.|+...+ +|||.|+++|+.||||++||+.+..
T Consensus         6 ~~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             CSEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCC
Confidence            346799999999998       9999999999999999876 4899999999999999999998754

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=6.8e-14  Score=105.40  Aligned_cols=59  Identities=27%  Similarity=0.379  Sum_probs=54.2

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC--CeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~--g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|++.  |+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            467999999999999999999999999999999999999994  99999999999987543

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.49  E-value=4.4e-14  Score=106.22  Aligned_cols=57  Identities=28%  Similarity=0.392  Sum_probs=53.4

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|++..++|||.|++ +|+.||||++||+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            45799999999999999999999999999999999999999 9999999999998753

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=7.4e-14  Score=107.33  Aligned_cols=60  Identities=30%  Similarity=0.491  Sum_probs=54.6

Q ss_pred             ceEEEEeccCCCC-CCCCccCCCCCEEEEEeec-CCCeEEEE-eCCeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAE-SDVELTLSVGDYVVVRKVT-NNGWAEGE-CKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~-~~~ELsl~~gd~I~V~~~~-~~gW~~G~-~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|||.+. .+++|+|.+||+|.|+... ++|||.|+ .+|+.||||.+||+.+...+
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~~   71 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDG   71 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCCC
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCCC
Confidence            4689999999999 9999999999999999985 79999999 69999999999999986543

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.1e-13  Score=107.68  Aligned_cols=59  Identities=19%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCC-CeEEEEe--CCeeeEecCCCeeeccCCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC--KGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~-gW~~G~~--~g~~G~fP~~Yve~l~~~p  365 (373)
                      ..|+|+|||++..++||+|.+||+|.|+...++ |||.|++  +|+.||||++||+....++
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   79 (81)
T 1x6g_A           18 TQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSGPS   79 (81)
T ss_dssp             CEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECCCSC
T ss_pred             CEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEccccc
Confidence            469999999999999999999999999998766 9999986  7999999999999876554

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.49  E-value=1.1e-13  Score=107.24  Aligned_cols=58  Identities=26%  Similarity=0.548  Sum_probs=53.6

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC-----CeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-----GKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~-----g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|++.     |+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~   69 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP   69 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCS
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCC
Confidence            457999999999999999999999999999989999999995     4999999999999854

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.49  E-value=3.1e-14  Score=107.64  Aligned_cols=55  Identities=22%  Similarity=0.503  Sum_probs=50.3

Q ss_pred             eEEEEeccCCCCCCC-CccCCCCCEEEEEeecC-----CCeEEEEe-CCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDV-ELTLSVGDYVVVRKVTN-----NGWAEGEC-KGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~-ELsl~~gd~I~V~~~~~-----~gW~~G~~-~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|+|.+++++ ||+|.+||+|.|++..+     +|||.|++ +|+.||||+|||+.+
T Consensus         8 ~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             -CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            469999999999999 99999999999999875     49999999 899999999999864

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.49  E-value=9.7e-14  Score=109.21  Aligned_cols=55  Identities=20%  Similarity=0.350  Sum_probs=50.6

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeee
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  360 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~  360 (373)
                      ....|+|+|||.+..++||+|.+||+|.|++. ++|||.|+. +|+.||||++||+.
T Consensus        30 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           30 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CCEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             CceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            34689999999999999999999999999998 689999995 89999999999974

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.49  E-value=4.7e-14  Score=110.59  Aligned_cols=61  Identities=20%  Similarity=0.372  Sum_probs=55.9

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccCCCc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+...++|||.|++  +|+.||||++||+.+.++..
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   68 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQG   68 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTCC-
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCccc
Confidence            45799999999999999999999999999999999999999  99999999999999876544

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=106.30  Aligned_cols=57  Identities=25%  Similarity=0.349  Sum_probs=53.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE-eCCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~-~~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            4679999999999999999999999999999999999999 59999999999998764

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.48  E-value=2.4e-13  Score=113.55  Aligned_cols=57  Identities=25%  Similarity=0.444  Sum_probs=52.5

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecCCCeeecc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRD  362 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~~Yve~l~  362 (373)
                      ....|+|+|+|++..++||+|.+||+|.|+... +|||.|++   +|+.||||++||+.+.
T Consensus        58 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           58 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CCEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             CceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            456899999999999999999999999999986 69999999   8999999999998764

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.48  E-value=4.1e-14  Score=109.68  Aligned_cols=58  Identities=24%  Similarity=0.490  Sum_probs=52.7

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~~  364 (373)
                      ..|+|+|||++..++||+|.+||+|.|+...++|||.|++  +|+.||||++||+.+..+
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            6 TLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             cEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            4699999999999999999999999999999999999999  999999999999998654

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1e-13  Score=108.77  Aligned_cols=57  Identities=18%  Similarity=0.290  Sum_probs=53.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+. +|+.||||++||+.+.
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~   76 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS   76 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEcc
Confidence            35799999999999999999999999999999999999975 9999999999999863

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.48  E-value=3.8e-14  Score=103.70  Aligned_cols=56  Identities=14%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~  363 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            368999999999999999999999999999 899999986 89999999999998754

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.48  E-value=5.8e-14  Score=112.01  Aligned_cols=64  Identities=20%  Similarity=0.373  Sum_probs=56.2

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecC----CCeEEEEeCCe-eeEecCCCeeeccCCCchh
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN----NGWAEGECKGK-AGWFPFGYIERRDRVLASK  368 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~----~gW~~G~~~g~-~G~fP~~Yve~l~~~p~~~  368 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...+    +|||.|++.|. .||||.+||+.+...+..+
T Consensus        16 ~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~~~~~   84 (93)
T 1wxu_A           16 DHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGRK   84 (93)
T ss_dssp             CBBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCBCCST
T ss_pred             CCEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCccccC
Confidence            4567999999999999999999999999999876    69999999777 9999999999986554433

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.48  E-value=4.1e-14  Score=103.43  Aligned_cols=55  Identities=24%  Similarity=0.499  Sum_probs=49.7

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeC-CeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECK-GKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~-g~~G~fP~~Yve~l  361 (373)
                      ..++|+|||.+..++||+|.+||+|.|+... ++|||.|++. |+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            4699999999999999999999999999885 4599999996 99999999999864

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.47  E-value=1.8e-14  Score=107.79  Aligned_cols=58  Identities=19%  Similarity=0.327  Sum_probs=53.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE-eCCeeeEecCCCeeecc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRD  362 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~-~~g~~G~fP~~Yve~l~  362 (373)
                      ....|+|+|||.+..+++|+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+.
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CCeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            34579999999999999999999999999999999999999 59999999999998754

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.47  E-value=5.6e-14  Score=111.50  Aligned_cols=56  Identities=36%  Similarity=0.560  Sum_probs=51.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeec-----CCCeEEEEe-CCeeeEecCCCeee
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-----NNGWAEGEC-KGKAGWFPFGYIER  360 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-----~~gW~~G~~-~g~~G~fP~~Yve~  360 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...     ++|||.|++ +|+.||||++||+.
T Consensus        28 ~~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           28 AGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CCcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            345799999999999999999999999999984     899999999 99999999999973

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.47  E-value=4.7e-14  Score=107.79  Aligned_cols=57  Identities=28%  Similarity=0.486  Sum_probs=52.3

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeCCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||++..++||+|.+||+|.|+... +.|||.|+++|+.||||++||+.+.
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            35699999999999999999999999999987 6799999999999999999999764

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=9.2e-14  Score=104.37  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=51.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~  363 (373)
                      ..|+|+|||.+..++||+|.+||+|.|++. ++|||.|+. +|+.||||++||+.+.+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLED-GRQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEHHHeEECCC
Confidence            469999999999999999999999999998 489999996 99999999999998764

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=6.6e-14  Score=112.76  Aligned_cols=61  Identities=25%  Similarity=0.406  Sum_probs=56.0

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ....++|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...+
T Consensus        33 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   93 (98)
T 1udl_A           33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             CSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             CceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCCC
Confidence            3567999999999999999999999999999988999999999999999999999886543

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.46  E-value=9.1e-14  Score=105.39  Aligned_cols=56  Identities=23%  Similarity=0.386  Sum_probs=51.9

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe---CCee---eEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKA---GWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~---~g~~---G~fP~~Yve~l~  362 (373)
                      ...|+|+|||.+..++||+|.+||+|.| ...++|||.|++   +|+.   ||||++||+.+.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            3579999999999999999999999999 888999999999   7999   999999998764

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.6e-13  Score=109.67  Aligned_cols=59  Identities=32%  Similarity=0.616  Sum_probs=53.5

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee--cC--CCeEEEE--eCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TN--NGWAEGE--CKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~--~~--~gW~~G~--~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|+|.+..++||+|.+||+|.|+..  .+  +|||.|+  ++|+.||||++||+.+..
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   79 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE   79 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCS
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEccc
Confidence            44689999999999999999999999999988  34  8999999  699999999999998753

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.45  E-value=4.7e-14  Score=112.05  Aligned_cols=61  Identities=30%  Similarity=0.437  Sum_probs=52.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee---------------cCCCeEEEEe--CCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV---------------TNNGWAEGEC--KGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~---------------~~~gW~~G~~--~g~~G~fP~~Yve~l~~~p  365 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+..               .+.|||.|++  +|+.||||.|||+.+.+..
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~~~   87 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGPVA   87 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEEEC
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecccc
Confidence            45689999999999999999999999999842               2339999988  6999999999999886543

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.45  E-value=4.4e-14  Score=116.07  Aligned_cols=58  Identities=26%  Similarity=0.399  Sum_probs=53.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCee---eEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA---GWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~---G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||.++.++||+|.+||+|.|+...++|||.|++.|+.   ||||+|||+.+.+
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A            5 SLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             CCCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCS
T ss_pred             CeEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecC
Confidence            356999999999999999999999999999999999999997766   9999999998754

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.9e-13  Score=103.14  Aligned_cols=58  Identities=16%  Similarity=0.345  Sum_probs=52.4

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeC-CeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECK-GKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~-g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+... ++|||.|++. |+.||||++||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            34799999999999999999999999999986 4679999996 9999999999998754

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.45  E-value=8.1e-14  Score=114.49  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=53.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee-cCCC--eEEEEeC--------CeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNG--WAEGECK--------GKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~-~~~g--W~~G~~~--------g~~G~fP~~Yve~l~~~p  365 (373)
                      ....|+|+|||.+.+++||+|++||+|.|+.+ .+.|  ||.|++.        |+.||||+|||+.+....
T Consensus        21 ~~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~~   92 (108)
T 1i1j_A           21 PISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLK   92 (108)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECS
T ss_pred             eeeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccccC
Confidence            34679999999999999999999999999998 3444  9999996        999999999999876543

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.44  E-value=1.3e-14  Score=109.88  Aligned_cols=60  Identities=25%  Similarity=0.461  Sum_probs=54.5

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeee-EecCCCeeeccCCCc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAG-WFPFGYIERRDRVLA  366 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G-~fP~~Yve~l~~~p~  366 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|+...++|||.|+++|+.| |||++||+.+...++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~~~   67 (71)
T 1hsq_A            7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEG   67 (71)
T ss_dssp             SCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCCCC
T ss_pred             eEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCccc
Confidence            468999999999999999999999999999999999999988887 999999998865443

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.1e-13  Score=104.54  Aligned_cols=58  Identities=21%  Similarity=0.497  Sum_probs=51.2

Q ss_pred             ceEEEEeccCCCCCCC--CccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDV--ELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~--ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|+|.+..++  +|+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.+...
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDGP   65 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEEE
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCCC
Confidence            4679999999998655  999999999999986 789999985 999999999999987543

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.43  E-value=7.9e-13  Score=108.21  Aligned_cols=60  Identities=23%  Similarity=0.479  Sum_probs=55.4

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|++  +|+.||||++||+.+..+
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   87 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI   87 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSSC
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCcc
Confidence            456799999999999999999999999999999999999996  899999999999988654

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=99.43  E-value=1e-11  Score=117.09  Aligned_cols=200  Identities=11%  Similarity=0.092  Sum_probs=138.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccC-C-CCCCChHHHHHHHHHHHHHHHHHHHH
Q 017347           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN-T-CTSGNTLSKAALSYGRARAQMEKERG  126 (373)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~-~-~~~~s~~g~al~~~g~a~~~l~~~~~  126 (373)
                      .+..+=...+.++.|.++++|.+..+...+.--......+++.+..++... | +.++..++.+|.+||++.+.|+..+.
T Consensus        22 ~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~  101 (265)
T 2q12_A           22 LLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHA  101 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455556667777877776665433222333447899999998752 2 34777899999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCCCCcchHHHHHHHHHHHHHHHH
Q 017347          127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVS-KRQAKVRETPGNPDLALKLDAAEVKLHDLKS  205 (373)
Q Consensus       127 ~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k-~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e  205 (373)
                      .+...+...|+.||++|+.+ |++.+++.+++|++.+.++++-.--|. .++.|  ..      +..++.+..++...+.
T Consensus       102 ~l~~~~~~~~~~PL~~f~~~-dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k--~~------e~~l~Ea~~~l~~~Rk  172 (265)
T 2q12_A          102 VLSTQLADAMMFPITQFKER-DLKEILTLKEVFQIASNDHDAAINRYSRLSKKR--EN------DKVKYEVTEDVYTSRK  172 (265)
T ss_dssp             HHHHHHHHHTHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--CC------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cc------hhhHHHHHHHHHHHHH
Confidence            99999999999999999998 999999888888888888876555552 22222  11      2245555566666655


Q ss_pred             HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHH
Q 017347          206 NMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD-QLEGE  257 (373)
Q Consensus       206 ~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~-~L~~e  257 (373)
                      .+....-+....|..+......-.|+.|..|+.|+.+|++++++.+. ++..-
T Consensus       173 ~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~  225 (265)
T 2q12_A          173 KQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEF  225 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54443334555565544422222399999999999999999999874 55443

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.42  E-value=1.6e-13  Score=114.05  Aligned_cols=58  Identities=33%  Similarity=0.443  Sum_probs=52.7

Q ss_pred             CCceEEEEeccCCCCCCCCccCCCCCEEEEEe-----ecCCCeEEEEeC----------CeeeEecCCCeeec
Q 017347          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRK-----VTNNGWAEGECK----------GKAGWFPFGYIERR  361 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~-----~~~~gW~~G~~~----------g~~G~fP~~Yve~l  361 (373)
                      .....|+|+|||.+..++||+|.+||+|.|+.     ..++|||.|++.          |+.||||++||+.+
T Consensus        42 ~~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           42 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             TCCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             CcceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            34578999999999999999999999999999     678999999873          89999999999876

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.41  E-value=3.7e-13  Score=115.81  Aligned_cols=59  Identities=29%  Similarity=0.575  Sum_probs=54.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||.+.+++||+|.+||+|.|+... ++|||.|+++|+.||||++||+.+.+
T Consensus         4 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            4 TFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             cCeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            346799999999999999999999999999984 89999999999999999999998753

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.41  E-value=3.3e-13  Score=106.87  Aligned_cols=57  Identities=25%  Similarity=0.413  Sum_probs=52.1

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~~  364 (373)
                      ..|+|+|||.+..+++|+|.+||+|.|+.. ++|||.|++  +|+.||||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            468999999999999999999999999998 579999998  899999999999987654

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.41  E-value=2.4e-13  Score=103.52  Aligned_cols=57  Identities=33%  Similarity=0.550  Sum_probs=52.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||.+..+++|+|.+||+|.|++.. +|||.|++   +|+.||||++||+.+..
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            35699999999999999999999999999985 89999998   79999999999998654

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.40  E-value=1.1e-13  Score=108.05  Aligned_cols=58  Identities=29%  Similarity=0.505  Sum_probs=51.3

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEee---------------cCCCeEEEEe--CCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV---------------TNNGWAEGEC--KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~---------------~~~gW~~G~~--~g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+..               .++|||.|+.  +|+.||||.+||+.+.+
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            4679999999999999999999999999964               2449999976  69999999999998755

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.40  E-value=3e-13  Score=113.08  Aligned_cols=59  Identities=22%  Similarity=0.363  Sum_probs=54.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|++   .|+.||||++||+.+.+.
T Consensus         3 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~   64 (120)
T 2kym_A            3 PLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLM   64 (120)
T ss_dssp             CCEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSS
T ss_pred             CEEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCC
Confidence            45799999999999999999999999999999999999985   688999999999998654

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.37  E-value=1.6e-12  Score=118.76  Aligned_cols=58  Identities=33%  Similarity=0.443  Sum_probs=52.9

Q ss_pred             CCceEEEEeccCCCCCCCCccCCCCCEEEEEe-----ecCCCeEEEEe----------CCeeeEecCCCeeec
Q 017347          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRK-----VTNNGWAEGEC----------KGKAGWFPFGYIERR  361 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~-----~~~~gW~~G~~----------~g~~G~fP~~Yve~l  361 (373)
                      .....|+|||+|.+...+||+|.+||+|.|+.     ..++|||.|++          +|+.||||.|||+.+
T Consensus       140 ~~~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          140 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             TCCEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             CcceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            34568999999999999999999999999999     67899999997          499999999999875

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.36  E-value=8.7e-14  Score=107.05  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=51.4

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeee
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  360 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~  360 (373)
                      ...|+|+|||.+.+.+||+|.+||+|.|++..++|||.|++ +|+.||||++||+.
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            35689999999999999999999999999998899999996 99999999999975

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.33  E-value=3.3e-12  Score=98.35  Aligned_cols=54  Identities=24%  Similarity=0.355  Sum_probs=44.4

Q ss_pred             EEEeccCCCC---CCCCccCCCCCEEEEEeec-CCCeEEEEe--CCeeeEecCCCeeecc
Q 017347          309 GEVVHPYQAE---SDVELTLSVGDYVVVRKVT-NNGWAEGEC--KGKAGWFPFGYIERRD  362 (373)
Q Consensus       309 ~~alydf~a~---~~~ELsl~~gd~I~V~~~~-~~gW~~G~~--~g~~G~fP~~Yve~l~  362 (373)
                      ++++|+|.+.   +++||+|.+||+|.|+... ++|||.|++  +|+.||||+|||+.+.
T Consensus        18 ~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           18 FQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             CSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            3445555553   2599999999999999994 899999994  8999999999998753

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.31  E-value=2.1e-12  Score=97.20  Aligned_cols=54  Identities=30%  Similarity=0.508  Sum_probs=43.6

Q ss_pred             EEEEeccCCCC------CCCCccCCCCCEEEEEee-cCCCeEEEE--eCCeeeEecCCCeeec
Q 017347          308 LGEVVHPYQAE------SDVELTLSVGDYVVVRKV-TNNGWAEGE--CKGKAGWFPFGYIERR  361 (373)
Q Consensus       308 ~~~alydf~a~------~~~ELsl~~gd~I~V~~~-~~~gW~~G~--~~g~~G~fP~~Yve~l  361 (373)
                      .++|++.|.+.      +++||+|.+||+|.|++. .++|||.|+  ++|+.||||+|||+.+
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C            6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cceEEEEEEecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            44555544443      445999999999999999 688999996  4899999999999875

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.30  E-value=2.9e-12  Score=121.13  Aligned_cols=59  Identities=27%  Similarity=0.436  Sum_probs=55.2

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ..|+|+|||.+.+++||+|.+||+|.|++..++|||.|+.+|+.||||++||+.+...+
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   61 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMD   61 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGSC
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCccc
Confidence            57999999999999999999999999999999999999999999999999999876543

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.29  E-value=2.1e-12  Score=116.46  Aligned_cols=61  Identities=30%  Similarity=0.485  Sum_probs=55.9

Q ss_pred             CCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      .....|+|+|||.+..++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+...
T Consensus         9 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   69 (193)
T 1ng2_A            9 IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSP   69 (193)
T ss_dssp             -CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCS
T ss_pred             CcCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccc
Confidence            3457899999999999999999999999999999999999999999999999999987543

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.28  E-value=2e-12  Score=131.07  Aligned_cols=59  Identities=27%  Similarity=0.471  Sum_probs=55.5

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   87 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVN   87 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccC
Confidence            45789999999999999999999999999999999999999999999999999998754

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.28  E-value=4.7e-12  Score=121.91  Aligned_cols=60  Identities=37%  Similarity=0.586  Sum_probs=55.1

Q ss_pred             CceEEEEeccCC--CCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQ--AESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~--a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.  +.+++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+...
T Consensus       236 ~~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (304)
T 2eyz_A          236 GPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ  297 (304)
T ss_dssp             CCCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSC
T ss_pred             CCEEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCCC
Confidence            445789999999  779999999999999999999999999999999999999999998654

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.27  E-value=5.2e-12  Score=115.21  Aligned_cols=58  Identities=24%  Similarity=0.555  Sum_probs=54.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus       157 ~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~  214 (217)
T 1gri_A          157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN  214 (217)
T ss_dssp             CCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEEC
T ss_pred             CceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECC
Confidence            4568999999999999999999999999999999999999999999999999999875

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.26  E-value=5.6e-12  Score=111.59  Aligned_cols=56  Identities=20%  Similarity=0.340  Sum_probs=52.5

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeee
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  360 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~  360 (373)
                      ....++|+|||.+.+++||+|.+||+|.|++..++|||.|+. +|+.||||+|||+.
T Consensus       117 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          117 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             cccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            456799999999999999999999999999999999999995 99999999999975

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.26  E-value=6.6e-12  Score=122.76  Aligned_cols=63  Identities=22%  Similarity=0.485  Sum_probs=57.6

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ....|+|+|||++..++||+|.+||+|.|+...++|||.|+++|+.||||+|||+.+.+.|..
T Consensus       173 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~  235 (341)
T 2dyb_A          173 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEE  235 (341)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCCT
T ss_pred             CCcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCcc
Confidence            346799999999999999999999999999999999999999999999999999998766543

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.25  E-value=1.5e-11  Score=110.87  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=55.0

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus        80 ~~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           80 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             TCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             cceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence            34678999999999999999999999999999999999999999999999999998754

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.22  E-value=1.3e-11  Score=109.25  Aligned_cols=56  Identities=20%  Similarity=0.520  Sum_probs=51.6

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeecc
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRD  362 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~  362 (373)
                      ...|+|+|||++..++||+|.+||+|.|++. +++||.|+.  +|+.||||++||+...
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~   69 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKAN   69 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeeccccccccc
Confidence            3579999999999999999999999999998 789999999  8999999999999754

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=111.03  Aligned_cols=57  Identities=25%  Similarity=0.439  Sum_probs=52.2

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|+|.+..+++|+|.+||+|.|++..+ |||.|++   +|+.||||++||+.+..
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            457999999999999999999999999999876 6999998   78999999999998754

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.22  E-value=3.4e-10  Score=112.12  Aligned_cols=193  Identities=11%  Similarity=0.130  Sum_probs=130.2

Q ss_pred             HHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccC-C-CCCCChHHHHHHHHHHHHHHHHHHHHH
Q 017347           50 LERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN-T-CTSGNTLSKAALSYGRARAQMEKERGN  127 (373)
Q Consensus        50 ~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~-~-~~~~s~~g~al~~~g~a~~~l~~~~~~  127 (373)
                      +..+=...+.++.|.++|+|.+..+...+.-.......+++.+..|+.+. | +..+..++.+|.+||++.+.|+..+..
T Consensus        23 l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~  102 (385)
T 2q13_A           23 LGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV  102 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333455556668888888777665422111222346899999999863 2 135667899999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCcchHHHHHHHHHHHHHHHHH
Q 017347          128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSN  206 (373)
Q Consensus       128 ~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~-~~~~~~~eL~~ae~K~~e~~e~  206 (373)
                      |..++...++.||++|+.+ |++.+++.+++|++.+.++++-.--|..-. |.+... ...+++.+|..+...|..+.-+
T Consensus       103 l~~~~~~~~~~PL~~f~~~-di~~~ke~kk~fek~~~~yd~al~k~~~~~-k~k~~e~~~~ea~~~l~~~rk~f~~~~ld  180 (385)
T 2q13_A          103 LSTQLADAMMFPITQFKER-DLKEILTLKEVFQIASNDHDAAINRYSRLS-KKRENDKVKYEVTEDVYTSRKKQHQTMMH  180 (385)
T ss_dssp             HHHHHHHHTHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-SSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998 999999777778887777765444441111 111110 0012334555555555555544


Q ss_pred             HHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          207 MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  251 (373)
Q Consensus       207 ~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL  251 (373)
                             ....|..+......-.|..|..|+.++.+|+.++.+.+
T Consensus       181 -------y~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~  218 (385)
T 2q13_A          181 -------YFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL  218 (385)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   45555555443333349999999999999999999875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.21  E-value=1e-11  Score=127.84  Aligned_cols=60  Identities=18%  Similarity=0.451  Sum_probs=53.5

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||++.+++||+|.+||+|.|++..++|||.|++  +|+.||||+|||+....+
T Consensus        84 ~~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l  145 (535)
T 2h8h_A           84 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI  145 (535)
T ss_dssp             ---CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             CCcEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccccc
Confidence            345799999999999999999999999999999999999999  899999999999976543

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.20  E-value=4e-12  Score=117.67  Aligned_cols=62  Identities=21%  Similarity=0.422  Sum_probs=56.2

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE-eCCeeeEecCCCeeeccCCCc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~-~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ....|+|+|||.+.+++||+|.+||+|.|++..++|||.|+ .+|+.||||+|||+.+.+.++
T Consensus       135 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~  197 (230)
T 2dvj_A          135 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA  197 (230)
T ss_dssp             CCCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSCC
T ss_pred             cceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCCc
Confidence            34579999999999999999999999999999999999999 699999999999999865543

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.18  E-value=3.1e-11  Score=89.14  Aligned_cols=46  Identities=26%  Similarity=0.517  Sum_probs=42.9

Q ss_pred             CCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          319 SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       319 ~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      +++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   47 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   47 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCS
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCCC
Confidence            5789999999999999999999999999999999999999998664

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=99.17  E-value=1.1e-08  Score=95.01  Aligned_cols=223  Identities=12%  Similarity=0.138  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhH
Q 017347            8 ATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTK   87 (373)
Q Consensus         8 ~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~   87 (373)
                      |.-+++.+.|..|.|.-++|.+.. ..|....+  +.+++..+|+      .++.+++++....+.+...    +.....
T Consensus         6 ~k~~~K~~~R~~q~lkqk~G~~e~-T~D~~Fe~--~e~rF~~le~------~~~kL~k~~k~y~~ai~~~----~~~q~~   72 (237)
T 4avm_A            6 AKQVQKKFSRAQEKVLQKLGKAVE-TKDERFEQ--SASNFYQQQA------EGHKLYKDLKNFLSAVKVM----HESSKR   72 (237)
T ss_dssp             -CHHHHHHHHHHHHHHHHTTSSCC-CCCHHHHH--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHcCCCcc-cccHHHHH--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            456778899999999999994432 34443311  1123333333      2233555554444443211    111224


Q ss_pred             HHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHH
Q 017347           88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEA  166 (373)
Q Consensus        88 Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~l  166 (373)
                      +++++...-....  ++.      -.+..+...+...+.+|...+.+.++.||..++.  .+++++ .++||.++ +.++
T Consensus        73 ~~~~l~~~y~~~~--~~~------~~~~~~~~~~~~l~~~~~~~l~~~vi~Pl~~~~~--~~~~i~k~I~KR~~k-llDy  141 (237)
T 4avm_A           73 VSETLQEIYSSEW--DGH------EELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVA--QFSEIKERIAKRGRK-LVDY  141 (237)
T ss_dssp             HHHHHHHHSCTTS--TTH------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--THHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhCCcc--CcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHH-HHHH
Confidence            6777765433222  211      1233334455678899999999999999999996  899998 44442222 3333


Q ss_pred             HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR  246 (373)
Q Consensus       167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q  246 (373)
                      +..|-.+.+-+.|...      -+.+|..||.+++++++.+..|+..+...+.....-...+...+|.+|+..|.+||..
T Consensus       142 d~~~~~~~kl~~k~~k------d~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~f~~~  215 (237)
T 4avm_A          142 DSARHHLEAVQNAKKK------DEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYRE  215 (237)
T ss_dssp             HHHHHHHHHHHTCSSC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333222222111      1569999999999999999999999999998765555566677999999999999999


Q ss_pred             HHHHHHHhHHHHHH
Q 017347          247 VLQILDQLEGEMLS  260 (373)
Q Consensus       247 ~~~iL~~L~~eL~s  260 (373)
                      ...++..|...|..
T Consensus       216 ~~~~~~~l~~~~~~  229 (237)
T 4avm_A          216 MSKLNHNLYEVMSK  229 (237)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHH
Confidence            99999999887765

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.13  E-value=9.7e-11  Score=112.71  Aligned_cols=60  Identities=20%  Similarity=0.434  Sum_probs=55.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE-eCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~-~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+...
T Consensus       133 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~  193 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA  193 (304)
T ss_dssp             CCCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCS
T ss_pred             cceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCC
Confidence            45679999999999999999999999999999999999999 5999999999999987654

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.71  E-value=7.2e-12  Score=120.55  Aligned_cols=60  Identities=32%  Similarity=0.493  Sum_probs=53.8

Q ss_pred             CceEEEEeccCCCC--CCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAE--SDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~--~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.++  +++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus       236 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (303)
T 2lqn_A          236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ  297 (303)
Confidence            34679999999754  4779999999999999999999999999999999999999998653

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.08  E-value=5e-11  Score=91.57  Aligned_cols=48  Identities=27%  Similarity=0.498  Sum_probs=44.5

Q ss_pred             CCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          317 AESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       317 a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      +.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   49 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   49 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCS
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCC
Confidence            567899999999999999999999999999999999999999988654

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.06  E-value=1.6e-10  Score=111.34  Aligned_cols=57  Identities=19%  Similarity=0.343  Sum_probs=53.1

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l  361 (373)
                      ....|+|+|||.+..++||+|.+||+|.|++..++|||.|++ +|+.||||++||+.+
T Consensus       146 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~  203 (308)
T 3qwy_A          146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ  203 (308)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC
T ss_pred             cceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccc
Confidence            346799999999999999999999999999999999999997 999999999999943

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.06  E-value=1.5e-11  Score=118.48  Aligned_cols=58  Identities=22%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             ceEEEEeccC--CCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf--~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||  .+.+++||+|.+||+|.|+...++|||.|+++|+.||||.|||+.+++
T Consensus       247 ~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          247 PAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEecC
Confidence            4578999999  455669999999999999999899999999999999999999998864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.06  E-value=2.2e-10  Score=115.19  Aligned_cols=59  Identities=20%  Similarity=0.452  Sum_probs=53.7

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEee-cCCCeEEEEeC-CeeeEecCCCeeeccCCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECK-GKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~-~~~gW~~G~~~-g~~G~fP~~Yve~l~~~p  365 (373)
                      ..|+|+|||++..++||+|.+||+|.|++. .++|||.|+.. |+.||||+|||+....+|
T Consensus        12 ~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~~~   72 (450)
T 1k9a_A           12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK   72 (450)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCC
T ss_pred             CEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccccc
Confidence            469999999999999999999999999998 67899999995 999999999999876543

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.03  E-value=1.7e-10  Score=105.12  Aligned_cols=55  Identities=29%  Similarity=0.505  Sum_probs=47.2

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeCCeeeEecCCCeeecc
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      .|+|+|||.+..++||+|.+||+|.|+... ++|||.|+++|+.||||.+||+...
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   57 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   57 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCC
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCccccccc
Confidence            589999999999999999999999999876 6799999999999999999998754

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.57  E-value=3.3e-11  Score=115.88  Aligned_cols=60  Identities=17%  Similarity=0.376  Sum_probs=55.4

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|++ +|+.||||++||+.+.+.
T Consensus       124 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~  184 (303)
T 2lqn_A          124 NLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRS  184 (303)
Confidence            456799999999999999999999999999999999999996 899999999999988654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.00  E-value=3e-10  Score=114.21  Aligned_cols=58  Identities=17%  Similarity=0.435  Sum_probs=53.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~~  364 (373)
                      ..|+|+|||++..++||+|.+||+|.|++..++|||.|++  +|+.||||+|||+...++
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l   62 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccccc
Confidence            4689999999999999999999999999999999999999  899999999999986543

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.00  E-value=3.4e-10  Score=116.46  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=53.6

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE--eCCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~--~~g~~G~fP~~Yve~l~~  363 (373)
                      ...++|+|||.+++++||+|.+||+|.|++..++|||.|+  ++|+.|+||+|||+.+..
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~  501 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIE  501 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEccc
Confidence            3579999999999999999999999999999999999999  599999999999998643

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.99  E-value=4.2e-10  Score=114.61  Aligned_cols=60  Identities=25%  Similarity=0.433  Sum_probs=53.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....|+|+|||++..++||+|.+||+|.|++.. ++|||.|+..|..|+||+|||+.+.++
T Consensus        42 ~~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~l  102 (495)
T 1opk_A           42 DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSL  102 (495)
T ss_dssp             --CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSSG
T ss_pred             CCcEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccccc
Confidence            345799999999999999999999999999987 789999999999999999999976543

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.97  E-value=7e-10  Score=85.78  Aligned_cols=53  Identities=23%  Similarity=0.358  Sum_probs=47.6

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEe----CCeeeEecCCCe
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGEC----KGKAGWFPFGYI  358 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~----~g~~G~fP~~Yv  358 (373)
                      ...+.|+|||.+..+.||+|.+||++.|++..  +++||.++.    .+++|+||+|||
T Consensus        17 ~e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           17 CELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             CEEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             ceEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            45689999999999999999999999999986  489999997    337899999999

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.90  E-value=1.5e-09  Score=109.14  Aligned_cols=57  Identities=25%  Similarity=0.458  Sum_probs=51.6

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEE--eCCeeeEecCCCeeeccC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~--~~g~~G~fP~~Yve~l~~  363 (373)
                      ...|+|+|||.+..++||+|.+||+|.|++. ++|||.|+  .+|+.||||+|||..+..
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccccc
Confidence            3579999999999999999999999999998 58899999  589999999999987643

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.85  E-value=5.1e-09  Score=76.74  Aligned_cols=43  Identities=30%  Similarity=0.387  Sum_probs=39.6

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK  347 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~  347 (373)
                      ....|+|+|||++..++||+|.+||+|.|+...++|||.|+++
T Consensus        20 ~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           20 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             SSCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC
T ss_pred             CceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEeC
Confidence            3467999999999999999999999999999999999999863

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.79  E-value=1.3e-09  Score=104.51  Aligned_cols=54  Identities=19%  Similarity=0.335  Sum_probs=48.8

Q ss_pred             eEEEEeccCCCCCCC-----CccCCCCCEEEEEeecCCCeEEEEeCC------eeeEecCCCeee
Q 017347          307 FLGEVVHPYQAESDV-----ELTLSVGDYVVVRKVTNNGWAEGECKG------KAGWFPFGYIER  360 (373)
Q Consensus       307 ~~~~alydf~a~~~~-----ELsl~~gd~I~V~~~~~~gW~~G~~~g------~~G~fP~~Yve~  360 (373)
                      .+|+|+|||++..++     +|+|.+||+|.|++..++|||.|++.|      +.||||+||++.
T Consensus         2 ~~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A            2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            468999999998877     999999999999999999999999843      789999999864

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.77  E-value=4.8e-09  Score=83.93  Aligned_cols=56  Identities=18%  Similarity=0.262  Sum_probs=49.5

Q ss_pred             eEEEEeccC--CCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf--~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~  362 (373)
                      ..++|+|+|  ...+..+|+|.+||+|.|+...+.+||.++. .|+.|+||.+||+.++
T Consensus        40 ~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d   98 (102)
T 1ri9_A           40 YSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADND   98 (102)
T ss_dssp             SCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC--
T ss_pred             EEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhcccc
Confidence            347788888  6778899999999999999999999999999 9999999999998765

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.71  E-value=7.6e-09  Score=109.19  Aligned_cols=58  Identities=22%  Similarity=0.323  Sum_probs=50.4

Q ss_pred             eEEEEeccCC---CCCCCCccCCCCCEEEEEee-----cCCCeEEEE--eCCeeeEecCCCeeeccCC
Q 017347          307 FLGEVVHPYQ---AESDVELTLSVGDYVVVRKV-----TNNGWAEGE--CKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       307 ~~~~alydf~---a~~~~ELsl~~gd~I~V~~~-----~~~gW~~G~--~~g~~G~fP~~Yve~l~~~  364 (373)
                      .+|+|+|||.   +.+++.|+|++||+|.|...     .++|||.|+  ++|+.|+||++||.++..+
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl  641 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTV  641 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCS
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCC
Confidence            5899999999   78899999999999999988     578999999  5899999999999998754

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=98.57  E-value=1.5e-06  Score=86.42  Aligned_cols=190  Identities=12%  Similarity=0.168  Sum_probs=120.3

Q ss_pred             HHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347           53 LYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLK  130 (373)
Q Consensus        53 l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~--~~~s~~g~al~~~g~a~~~l~~~~~~~~~  130 (373)
                      +-...+.++.|.+++++.+..+...+..-......+++.+..+..+..+  ..+..+..+|.+|+.+.+.+...+..+..
T Consensus        49 ~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~~~L~~  128 (407)
T 4h8s_A           49 FEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLHTELAK  128 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455666666666544332111111223567777777665421  23445688999999999999999999999


Q ss_pred             HHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCcchHHHHHHHHHHHHHHHHHHHH
Q 017347          131 ALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSNMAI  209 (373)
Q Consensus       131 ~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~-~~~~~~~eL~~ae~K~~e~~e~~~~  209 (373)
                      .+...+++||..|+.+ +++.+++.+++|++..+++++-.--|..-..+ ++.. ...+...+|..+...|..+.-+   
T Consensus       129 ~~~~~i~~pL~~f~k~-di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~-k~~~~~~~e~~~~l~~~Rk~f~~asld---  203 (407)
T 4h8s_A          129 QLADTMVLPIIQFREK-DLTEVSTLKDLFGLASNEHDLSMAKYSRLPKK-KENEKVKTEVGKEVAAARRKQHLSSLQ---  203 (407)
T ss_dssp             HHHHHTHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCST-TCCHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCchHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            9999999999999998 99999988888988888887766656222111 1110 0011233444455555554433   


Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          210 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  251 (373)
Q Consensus       210 L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL  251 (373)
                          ....|..+........+..|..|+.++..|+++..+.+
T Consensus       204 ----yv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~  241 (407)
T 4h8s_A          204 ----YYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMF  241 (407)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                44455444333333338889999999999998887764

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.53  E-value=7.9e-08  Score=93.14  Aligned_cols=53  Identities=21%  Similarity=0.357  Sum_probs=47.6

Q ss_pred             CceEEEEeccCCCCCCCC-------ccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecCCC
Q 017347          305 GYFLGEVVHPYQAESDVE-------LTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGY  357 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~E-------Lsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~~Y  357 (373)
                      ....++|+|||++..+++       |+|..||++.|++..+++||.|++   +|..|+||+++
T Consensus        37 ~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           37 VAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             ccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            346899999999987664       999999999999999999999999   57899999987

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*

Probab=98.51  E-value=2.2e-05  Score=71.78  Aligned_cols=167  Identities=14%  Similarity=0.193  Sum_probs=120.3

Q ss_pred             CCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH
Q 017347           81 QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD  160 (373)
Q Consensus        81 ~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~  160 (373)
                      |.+.  -||+.+...|..-+     ..|.+...+|++++.|++-...+...+. .|+.-|..|+.. -+.|...--++|+
T Consensus        42 qtq~--~lG~~f~~l~~~~p-----~l~~~f~~~~~~~r~~~k~g~~Ll~~L~-~f~s~l~T~~~k-aI~DT~lTIk~ye  112 (224)
T 1i4d_A           42 QTQH--ALGDAFADLSQKSP-----ELQEEFGYNAETQKLLCKNGETLLGAVN-FFVSSINTLVTK-TMEDTLMTVKQYE  112 (224)
T ss_dssp             HHHH--HHHHHHHHHHHTCG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHhhCc-----HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhH-hccHHHHHHHHHH
Confidence            3455  59999999999754     5899999999999999999999998776 689999999987 8888886566799


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017347          161 RMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE  240 (373)
Q Consensus       161 ~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAq  240 (373)
                      ..|-+..+-|+|++.-....++...    --.++.++..+.++++.+++|.+.+..-|--.+..+=++...+|..|..|.
T Consensus       113 ~aR~EY~ay~~~~ee~~~~~~~~~~----l~rve~~q~~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al  188 (224)
T 1i4d_A          113 AARLEYDAYRTDLEELSLGPRDAGT----RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAV  188 (224)
T ss_dssp             HHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHhHHHHHhhHHHhhcccccccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            9999999999998654432111111    113445666677777777777666877775555555444566999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHH
Q 017347          241 RTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       241 l~Yh~q~~~iL~~L~~eL~s  260 (373)
                      ..||..+.+.|+..-...+-
T Consensus       189 ~~y~~~~~~~l~~~~~~f~i  208 (224)
T 1i4d_A          189 SAYFAGNQKQLEQTLQQFNI  208 (224)
T ss_dssp             HHHHHHHHHHHCC-------
T ss_pred             HHHHHHhHHHHHHHHHhCCc
Confidence            99999999999776665543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.50  E-value=1.2e-07  Score=86.42  Aligned_cols=59  Identities=19%  Similarity=0.317  Sum_probs=51.5

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCC---eEEEEeCCeeeEecCCCeeeccCCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNG---WAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~g---W~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ..+.++|+|.+..+.+|.|..|++|.|+.+.+.+   ||.|..+|+.||||.+||+.+...+
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~~~  232 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIK  232 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC---
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCcCC
Confidence            4678999999999999999999999999887655   9999999999999999999875543

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.50  E-value=1.6e-05  Score=75.58  Aligned_cols=58  Identities=16%  Similarity=0.026  Sum_probs=47.4

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~p  365 (373)
                      .+..++++|||.+.   ++++.+||.+++++..+..||..+. +|..|+||++|+....|-|
T Consensus       197 ~~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~p~~  255 (283)
T 3pe0_A          197 GRLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPPPNQ  255 (283)
T ss_dssp             SCEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCSCCH
T ss_pred             CCceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCCCCH
Confidence            34679999999774   7999999999999998889999998 8899999999998765443

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.45  E-value=9.1e-08  Score=75.84  Aligned_cols=53  Identities=19%  Similarity=0.320  Sum_probs=47.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecC--CCeEEEEe-CCeeeEecCCCeee
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGEC-KGKAGWFPFGYIER  360 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~--~gW~~G~~-~g~~G~fP~~Yve~  360 (373)
                      ..++|+|+ ...+..+|+|..|++|.|+...+  +|||.++. .|..|+||.+||+.
T Consensus        29 ~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           29 HLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             EEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             EEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEE
Confidence            47899999 46688999999999999999864  78999999 99999999999986

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.43  E-value=5e-07  Score=70.71  Aligned_cols=60  Identities=17%  Similarity=0.142  Sum_probs=48.9

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec----CCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT----NNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~----~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ..+.+..+|.+...-+|+|.+||+|.|+++.    +.+||-...+|..||||++||+.+.+.+.
T Consensus        18 ~LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~~   81 (92)
T 1ug1_A           18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS   81 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSS
T ss_pred             heEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCCC
Confidence            3577778888888999999999999999985    33444455599999999999999987654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.42  E-value=2.1e-07  Score=83.40  Aligned_cols=57  Identities=19%  Similarity=0.482  Sum_probs=52.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ....++++|+|++....+|+|..||++.|....+.+||.+...|..|+||.+|+...
T Consensus        13 ~~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHH
T ss_pred             CceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccc
Confidence            456789999999999999999999999999999999999999999999999998754

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.30  E-value=5.6e-07  Score=96.03  Aligned_cols=56  Identities=18%  Similarity=0.297  Sum_probs=49.7

Q ss_pred             CceEEEEeccCCCCCCCC-----ccCCCCCEEEEEeecCCCeEEEEeC------CeeeEecCCCeee
Q 017347          305 GYFLGEVVHPYQAESDVE-----LTLSVGDYVVVRKVTNNGWAEGECK------GKAGWFPFGYIER  360 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~E-----Lsl~~gd~I~V~~~~~~gW~~G~~~------g~~G~fP~~Yve~  360 (373)
                      ...+++|+|||++..+++     |+|++||++.|++..+.+||.+++.      +..|+||++|+..
T Consensus       426 ~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e  492 (721)
T 2xkx_A          426 RGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE  492 (721)
T ss_pred             cceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHH
Confidence            457789999999998888     9999999999999999999999983      3569999999854

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.27  E-value=7.2e-07  Score=88.59  Aligned_cols=56  Identities=20%  Similarity=0.156  Sum_probs=49.2

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee---cCCCeEEEEeCC------eeeEecCCCeee
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV---TNNGWAEGECKG------KAGWFPFGYIER  360 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~---~~~gW~~G~~~g------~~G~fP~~Yve~  360 (373)
                      ...+++|+|||++.++.+|+|..||++.|++.   .+.+||.+.+.+      ..|+||++|+..
T Consensus       105 ~~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          105 DSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             cccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            45788999999999999999999999999998   678999999822      489999999863

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=98.26  E-value=0.00016  Score=72.86  Aligned_cols=56  Identities=9%  Similarity=-0.032  Sum_probs=48.9

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~  364 (373)
                      +..+++||||.   ..++++.+||.+++.+..+..||..+. +|..|+||+.|+-+..|-
T Consensus       283 ~~~V~alcdy~---~~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipppd  339 (450)
T 3r6n_A          283 PIILRALCDYK---QDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPN  339 (450)
T ss_dssp             CCEEEESSCEE---ETTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCSCC
T ss_pred             CceEEEecccc---CCeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCCCC
Confidence            45699999998   478999999999999999999999998 689999999998765443

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A

Probab=98.20  E-value=0.00071  Score=63.11  Aligned_cols=154  Identities=12%  Similarity=0.119  Sum_probs=97.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhh
Q 017347          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY----DRMRQEAEAQAIEVSKRQAKV  180 (373)
Q Consensus       105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y----~~~r~~le~rrld~k~r~~K~  180 (373)
                      -.+|.+|..+...++.|+.-.+.+...+...+|.||+.-++- +.|.+..+.++|    .+.+..++...-++++-+.|.
T Consensus        73 ~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie~-d~K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~  151 (253)
T 2ykt_A           73 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVEL-DSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKS  151 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Confidence            479999999999999999999999999999999999999986 888877554444    455666666666663333332


Q ss_pred             ccCCCCcc-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017347          181 RETPGNPD-LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML  259 (373)
Q Consensus       181 ~e~~~~~~-~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~  259 (373)
                      + .++++. ....+..+.+.+.+-...|...-+...+.-+--+-.+=-+.+.++..|+..+..||.+...+|+.--..|.
T Consensus       152 k-~gk~~~~~~~~~~~~~e~v~~~~~~le~~~~~~lr~aL~EERrRycflv~~~~~v~~~~~~~h~~~~~~L~~~l~~w~  230 (253)
T 2ykt_A          152 Q-GSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQ  230 (253)
T ss_dssp             ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            2 111111 11233333322222222222222212222222222222445889999999999999999888888777777


Q ss_pred             H
Q 017347          260 S  260 (373)
Q Consensus       260 s  260 (373)
                      .
T Consensus       231 ~  231 (253)
T 2ykt_A          231 Q  231 (253)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.19  E-value=1.1e-06  Score=84.43  Aligned_cols=55  Identities=15%  Similarity=0.069  Sum_probs=45.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCC---------eEEEEeC------CeeeEecCCCee
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNG---------WAEGECK------GKAGWFPFGYIE  359 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~g---------W~~G~~~------g~~G~fP~~Yve  359 (373)
                      +.++++|+|||++..+++|+|..||++.|++..++|         ||.+.+-      +..|++|++|+.
T Consensus         3 dsfyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~a   72 (308)
T 3kfv_A            3 DSFYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRA   72 (308)
T ss_dssp             CCEEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHH
T ss_pred             ccEEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHH
Confidence            457899999999999999999999999999987665         9999882      278999999874

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.11  E-value=2.7e-06  Score=86.23  Aligned_cols=56  Identities=18%  Similarity=0.125  Sum_probs=49.3

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEee---cCCCeEEEEe---CC---eeeEecCCCeee
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV---TNNGWAEGEC---KG---KAGWFPFGYIER  360 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~---~~~gW~~G~~---~g---~~G~fP~~Yve~  360 (373)
                      ...+++++|+|++..+.+|+|..||++.|++.   .+.+||.+.+   ++   ..|+||++|+..
T Consensus        97 ~s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           97 DSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             CCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             cccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            34678999999999999999999999999998   6789999998   33   689999999854

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}

Probab=98.01  E-value=0.0016  Score=60.55  Aligned_cols=202  Identities=17%  Similarity=0.166  Sum_probs=115.0

Q ss_pred             Hhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCC--CChHHHHHHHHHHHHH
Q 017347           43 ELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTS--GNTLSKAALSYGRARA  119 (373)
Q Consensus        43 e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~--~s~~g~al~~~g~a~~  119 (373)
                      +|. -+..+|+|.+....   |++.+--.+..           +..+-+.+.+-|.--.++.  .-.+|.+|..+...++
T Consensus        25 ~mk~~~P~~e~lv~~g~k---y~~al~~~~~a-----------~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr   90 (253)
T 2d1l_A           25 DMKGSYPVWEDFINKAGK---LQSQLRTTVVA-----------AAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHR   90 (253)
T ss_dssp             HHHTCHHHHHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHccCcchHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHH
Confidence            343 57777777766443   76655322221           2234455555554221112  2469999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhccC--CCCcchHHHH
Q 017347          120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLA----QRYDRMRQEAEAQAIEVSKRQAKVRET--PGNPDLALKL  193 (373)
Q Consensus       120 ~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k----~~y~~~r~~le~rrld~k~r~~K~~e~--~~~~~~~~eL  193 (373)
                      .|+.-.+.+...+...+|.||+.-++- +.|.+..+-    ++|.++|.++..+.-+..+-+.|.+..  .+....-..+
T Consensus        91 ~ie~~l~~~~k~~~~eli~pLe~k~e~-d~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l  169 (253)
T 2d1l_A           91 SIEAKLRQFSSALIDCLINPLQEQMEE-WKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQL  169 (253)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHH
Confidence            999999999999999999999999986 777776443    556788888887777773322222221  0111112223


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          194 DAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       194 ~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      ..+-..+..-...+...-+...+.-+--|--+=-+++.+|..+++.++.++... ..|+..-..|..
T Consensus       170 ~~a~q~v~~~~~~le~~~~~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~-~~l~~~l~~~~~  235 (253)
T 2d1l_A          170 DSALQDVNDKYLLLEETEKQAVRKALIEERGRFCTFISMLRPVIEEEISMLGEI-THLQTISEDLKS  235 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence            333221211111222222222222221222222445778888888888888755 344444444544

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.88  E-value=9.9e-06  Score=77.34  Aligned_cols=51  Identities=18%  Similarity=0.354  Sum_probs=38.7

Q ss_pred             ceEEEEeccCCCCCCC-----CccCCCCCEEEEEeecCCCeEEEEe---CC---eeeEecCC
Q 017347          306 YFLGEVVHPYQAESDV-----ELTLSVGDYVVVRKVTNNGWAEGEC---KG---KAGWFPFG  356 (373)
Q Consensus       306 ~~~~~alydf~a~~~~-----ELsl~~gd~I~V~~~~~~gW~~G~~---~g---~~G~fP~~  356 (373)
                      ..+++|+|||++..++     .|+|..||++.|.+..++|||.+++   ++   ..|++|+.
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~   66 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK   66 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeCh
Confidence            4689999999998665     5999999999999999999999986   22   48999985

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=97.85  E-value=1.4e-07  Score=91.87  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=44.7

Q ss_pred             EEEEeccCCC----CCCCCccC--CCCCEEEEEeecCCCeEEEEeCC---eeeEecCC-CeeeccCC
Q 017347          308 LGEVVHPYQA----ESDVELTL--SVGDYVVVRKVTNNGWAEGECKG---KAGWFPFG-YIERRDRV  364 (373)
Q Consensus       308 ~~~alydf~a----~~~~ELsl--~~gd~I~V~~~~~~gW~~G~~~g---~~G~fP~~-Yve~l~~~  364 (373)
                      .++++|+|.+    .++.+|+|  .+||+|.|+...++|||.|+++|   +.||||.+ ||+.+++.
T Consensus       268 ~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~~~~  334 (341)
T 2dyb_A          268 LLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDNY  334 (341)
T ss_dssp             CHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEECC--
T ss_pred             chhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEecCCc
Confidence            3457888887    55666666  89999999999999999999855   45599998 88877654

>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}

Probab=97.34  E-value=0.086  Score=47.85  Aligned_cols=186  Identities=12%  Similarity=0.117  Sum_probs=107.7

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHhhhh---cccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHH
Q 017347           46 QHQRLERLYISTRAGKHFQRDIVRGV---EGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQME  122 (373)
Q Consensus        46 ~~~~~e~l~~~~~~~k~~~~~i~r~~---e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~  122 (373)
                      -+.+||+|-...+.   |++.+--.+   .+|.+       ..-++|+.=    ...+  ..-.+|.+|+.+.+.++.|.
T Consensus        25 fnP~l~nlv~lg~~---Y~kAl~a~~~A~~~y~d-------A~~Kige~A----~~S~--~skeLG~vL~qis~~hR~i~   88 (222)
T 3ok8_A           25 FNPALENLVYLGNN---YLRAFHALSEAAEVYFS-------AIQKIGEQA----LQSS--TSQILGEILVQMSDTQRHLN   88 (222)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHSS--SCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHh----ccCC--chhHHHHHHHHHHHHHHHHH
Confidence            46788888876554   777664333   33332       222444432    2222  22369999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH-HH---HHHHHHHHHHHHHhhhhccCCCCcchHHH-HHHHH
Q 017347          123 KERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR-MR---QEAEAQAIEVSKRQAKVRETPGNPDLALK-LDAAE  197 (373)
Q Consensus       123 ~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~-~r---~~le~rrld~k~r~~K~~e~~~~~~~~~e-L~~ae  197 (373)
                      ...+.+...+...+|.||..-++- |.+-+....++|.. .|   ..++.-+-++++...|..   +++.   + ++.- 
T Consensus        89 ~~le~~~k~f~~elI~pLE~k~e~-D~k~i~~~~K~y~~e~k~~~~~leK~~~elkK~~rksq---k~~~---k~~e~v-  160 (222)
T 3ok8_A           89 SDLEVVVQTFHGDLLQHMEKNTKL-DMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRD---KNAR---EMKESV-  160 (222)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---TTHH---HHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc---cChH---HHHHHH-
Confidence            999999999999999999999886 88888755565632 12   224444555554443322   2321   2 1100 


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017347          198 VKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       198 ~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL  258 (373)
                        -.+..+....+......+|++ +--.=.+.+..-..|......||.+...+|++--..|
T Consensus       161 --~~~q~el~~f~~~s~r~Al~E-ErRRYcFL~ekhc~~~~~~~~~h~k~~~~L~~kl~~W  218 (222)
T 3ok8_A          161 --NRLHAQMQAFVSESKRAAELE-EKRRYRFLAEKHLLLSNTFLQFLGRARGMLQNRVLLW  218 (222)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhh
Confidence              111111111111122222222 1111144466677777788889999888876654444

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=97.16  E-value=0.037  Score=54.47  Aligned_cols=153  Identities=12%  Similarity=0.008  Sum_probs=96.8

Q ss_pred             HHHHHHHHhhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNT---CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~---~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r  163 (373)
                      .||..+...|.-+.   ....+.+++||.++|++...+++........--..|.+||+.|+.  .+.-++.+-.++.+..
T Consensus       228 ~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~--ll~s~Kdll~~R~~aL  305 (386)
T 4akv_A          228 KLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQG--LLSNFPDIIHLQKGAF  305 (386)
T ss_dssp             HHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            46666666665221   113457999999999999999999998888888899999999885  4443332211122221


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017347          164 QEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY  243 (373)
Q Consensus       164 ~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Y  243 (373)
                      .+++    +..+-..+    .+ ++ ..++..++.+|+.....       +...|...+.+.-.=.-..|..|++.|..|
T Consensus       306 ~k~~----ea~kl~~~----~K-~~-~~~~~e~~~r~e~IS~~-------~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~  368 (386)
T 4akv_A          306 AKVK----ESQRMSDE----GR-MV-QDEADGIRRRCRVVGFA-------LQAEMNHFHQRRELDFKHMMQNYLRQQILF  368 (386)
T ss_dssp             HHHH----HHHHHHHT----TS-SC-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHh----CC-cc-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111    00111111    11 11 24667777788887777       666665554444211244788999999999


Q ss_pred             HHHHHHHHHHhHHHH
Q 017347          244 HQRVLQILDQLEGEM  258 (373)
Q Consensus       244 h~q~~~iL~~L~~eL  258 (373)
                      |++..+.|..+...+
T Consensus       369 ~~~~~~~le~~l~~f  383 (386)
T 4akv_A          369 YQRVGQQLEKTLRMY  383 (386)
T ss_dssp             HHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999988876654

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=96.83  E-value=0.18  Score=46.96  Aligned_cols=94  Identities=17%  Similarity=0.116  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhh----cccccCCCCCCchhhHHHHHHHHhhc------cCCCCCCChHHHHHHHHHHH
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGV----EGYIVTGSKQVEIGTKLSEDSRKYGS------DNTCTSGNTLSKAALSYGRA  117 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~----e~~~~~~~~~~e~~~~Lg~~m~~~g~------e~~~~~~s~~g~al~~~g~a  117 (373)
                      .+++.|+.+++....|.++|..-.    +..       -|.+..|..-+.+|..      +-+  +...+..++..+-..
T Consensus         7 ~g~~~l~~~~~~g~~~~~el~~f~keRa~iE-------~eYak~L~kLakk~~~~~~~~~~~~--~~~t~~~~w~~~l~~   77 (301)
T 2efk_A            7 GQFEVLERHTQWGLDLLDRYVKFVKERTEVE-------QAYAKQLRSLVKKYLPKRPAKDDPE--SKFSQQQSFVQILQE   77 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHSCC-------C--TTSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccccccccc--ccchHHHHHHHHHHH
Confidence            477788888877766666664322    211       1233344444555532      223  345788999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHH
Q 017347          118 RAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA  152 (373)
Q Consensus       118 ~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~  152 (373)
                      ..+++..+..|...+...+++||..+..  +++..
T Consensus        78 ~e~~a~~h~~~a~~L~~~v~~~l~~~~~--~~~~~  110 (301)
T 2efk_A           78 VNDFAGQRELVAENLSVRVCLELTKYSQ--EMKQE  110 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            9999999999999999999999999986  44443

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=96.67  E-value=0.24  Score=46.14  Aligned_cols=99  Identities=17%  Similarity=0.175  Sum_probs=63.0

Q ss_pred             HHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccC-----CCCCCChHHHHHHHHHHHHHHHHH
Q 017347           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN-----TCTSGNTLSKAALSYGRARAQMEK  123 (373)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~-----~~~~~s~~g~al~~~g~a~~~l~~  123 (373)
                      +++.|+.+++....+.++|..-..---   .---+.+..|..-..++..-.     + +....+..++..+-....+++.
T Consensus        15 g~~~l~~r~~~g~~~~~el~~f~~eRa---~iE~eYak~L~kLa~~~~~~~~~~~~~-~~~~t~~~aw~~~~~~~e~~a~   90 (305)
T 2efl_A           15 QFDNLEKHTQWGIDILEKYIKFVKERT---EIELSYAKQLRNLSKKYQPKKNSKEEE-EYKYTSCKAFISNLNEMNDYAG   90 (305)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTSCC--------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccccccCccc-cccccHHHHHHHHHHHHHHHHH
Confidence            677888887777777666643322000   000122333444444443211     1 0134677888888888999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHhcCCCchHHH
Q 017347          124 ERGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (373)
Q Consensus       124 ~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~  153 (373)
                      .+..+...+...+++||..+..  +++..+
T Consensus        91 ~h~~~a~~l~~~v~~~l~~~~~--~~~~~r  118 (305)
T 2efl_A           91 QHEVISENMASQIIVDLARYVQ--ELKQER  118 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            9999999999999999999986  455443

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=96.65  E-value=0.13  Score=47.32  Aligned_cols=92  Identities=8%  Similarity=0.117  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 017347           47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERG  126 (373)
Q Consensus        47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~  126 (373)
                      +.+++.|+.+++....+.++|..-..-=-   .---+.+..|..-..++....   ..+.+..++..+-....+++..+.
T Consensus        17 ~~g~~~l~~~~~~g~~~~~el~~f~~eRa---~iE~eYak~L~kLa~~~~~~~---~~gs~~~~w~~~~~~~e~~a~~h~   90 (276)
T 2v0o_A           17 NSGFDVLYHNMKHGQISTKELADFVRERA---TIEEAYSRSMTKLAKSASNYS---QLGTFAPVWDVFKTSTEKLANCHL   90 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTSC---CCSSSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCC---CcchHHHHHHHHHHHHHHHHHHHH
Confidence            46788899888887777777754332000   000122333444444443211   222466677777777889999999


Q ss_pred             HHHHHHhhhhhHHHHHHhc
Q 017347          127 NLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       127 ~~~~~~~~~fl~PL~~~~~  145 (373)
                      .+...+. .++.||..+..
T Consensus        91 ~~a~~l~-~~~~~l~~~~~  108 (276)
T 2v0o_A           91 DLVRKLQ-ELIKEVQKYGE  108 (276)
T ss_dssp             HHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHH
Confidence            9999994 89999999986

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=96.58  E-value=0.48  Score=44.54  Aligned_cols=185  Identities=12%  Similarity=0.078  Sum_probs=108.4

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhh----cccccCCCCCCchhhHHHHHHHHhh------ccCCCCCCChHHHHHHHHHHH
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGV----EGYIVTGSKQVEIGTKLSEDSRKYG------SDNTCTSGNTLSKAALSYGRA  117 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~----e~~~~~~~~~~e~~~~Lg~~m~~~g------~e~~~~~~s~~g~al~~~g~a  117 (373)
                      .+++.|+.+++....+.+.|..-.    +...       +.+..|..-+.++.      .|.|     .+..++..+-..
T Consensus        29 ~g~~~l~~r~~~g~~~~~el~~f~keRa~iE~-------eYak~L~kLakk~~~~~~~~~e~g-----tl~~aw~~i~~e   96 (312)
T 3abh_A           29 GNYKRTVKRIDDGHRLCSDLMNCLHERARIEK-------AYAQQLTEWARRWRQLVEKGPQYG-----TVEKAWMAFMSE   96 (312)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHSSCCH-----HHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCCCC-----hHHHHHHHHHHH
Confidence            488899998888777777774433    1111       12333444444443      3333     688899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHhcCC-------CchHHH---------------------HHHHHHHHHHHHHHHH
Q 017347          118 RAQMEKERGNLLKALGTQVAEPLRAMVLGA-------PLDDAR---------------------HLAQRYDRMRQEAEAQ  169 (373)
Q Consensus       118 ~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~-------~lk~~~---------------------~~k~~y~~~r~~le~r  169 (373)
                      ..+++..+..+...+.+..++||+.+....       .+++.+                     ..|+.|+...++++..
T Consensus        97 ~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a  176 (312)
T 3abh_A           97 AERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLA  176 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999886410       133211                     1233444444444433


Q ss_pred             HHHHHHH----------hhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 017347          170 AIEVSKR----------QAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEA  239 (373)
Q Consensus       170 rld~k~r----------~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veA  239 (373)
                      +..+.+.          ..|...  +......++..|..+|..+-..+......-...|..+-..-|.+-..++..|-+.
T Consensus       177 ~~~~~~~~~d~~~~~k~~eK~~~--k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~  254 (312)
T 3abh_A          177 ISREANSKADPSLNPEQLKKLQD--KIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREV  254 (312)
T ss_dssp             TTHHHHHHTCTTCCSHHHHGGGT--TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccCCcCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322100          011111  1223345666777777777666666666666666654433333335566666666


Q ss_pred             HHHHHHH
Q 017347          240 ERTYHQR  246 (373)
Q Consensus       240 ql~Yh~q  246 (373)
                      ...|...
T Consensus       255 l~~~~~~  261 (312)
T 3abh_A          255 LLEVQKH  261 (312)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666665

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=96.53  E-value=0.058  Score=52.63  Aligned_cols=152  Identities=9%  Similarity=0.017  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhcc--CC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSD--NT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR  163 (373)
Q Consensus        87 ~Lg~~m~~~g~e--~~-~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r  163 (373)
                      .||..+...|.-  +. +...+.++++|.++|++...++.........--..|.+||+.++.  .+.-++.+-.+..+..
T Consensus       208 ~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~Y~~--~l~avKd~l~~r~~aL  285 (366)
T 3dyt_A          208 KIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKG--FLGCFPDIIGTHKGAI  285 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSGGGTHHHHHHHHHHHHH--HHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            567777666652  11 123457999999999999999999998888888899999998874  3333332111111111


Q ss_pred             HHHH-HHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 017347          164 QEAE-AQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT  242 (373)
Q Consensus       164 ~~le-~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~  242 (373)
                      .++. ..|+   .+.+|.       + ..++..++.+|+...+.       +...|...+.+.-.=.-..|..|++.|..
T Consensus       286 ~k~~e~~kl---~~~~K~-------~-~~~~~~~~~r~e~is~~-------~~~El~rF~~~r~~Dfk~~l~~yl~~qi~  347 (366)
T 3dyt_A          286 EKVKESDKL---VATSKI-------T-LQDKQNMVKRVSIMSYA-------LQAEMNHFHSNRIYDYNSVIRLYLEQQVQ  347 (366)
T ss_dssp             HHHHTHHHH---HHTTSS-------C-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HhccCc-------c-hhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 0000   011121       1 23677888888888777       66666554444311113478899999999


Q ss_pred             HHHHHHHHHHHhHHHH
Q 017347          243 YHQRVLQILDQLEGEM  258 (373)
Q Consensus       243 Yh~q~~~iL~~L~~eL  258 (373)
                      |+++..+.|..+...+
T Consensus       348 ~~k~~~~~w~~~l~~~  363 (366)
T 3dyt_A          348 FYETIAEKLRQALSRF  363 (366)
T ss_dssp             HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999888876644

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=96.35  E-value=0.29  Score=46.97  Aligned_cols=90  Identities=12%  Similarity=0.102  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhh----cccccCCCCCCchhhHHHHHHHHhhcc--CCCCCCChHHHHHHHHHHHHHHH
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGV----EGYIVTGSKQVEIGTKLSEDSRKYGSD--NTCTSGNTLSKAALSYGRARAQM  121 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~----e~~~~~~~~~~e~~~~Lg~~m~~~g~e--~~~~~~s~~g~al~~~g~a~~~l  121 (373)
                      .+++.|+.+++....|.++|..-.    +...       +.+..|..-+.++..-  .+ +....+..++..+-....++
T Consensus        29 ~g~~~L~~r~~~g~~~~~el~~f~keRa~IE~-------eYak~L~kLakk~~~~~~~~-~e~gtl~~aw~~l~~e~e~~  100 (350)
T 3aco_A           29 GNYKRTVKRIDDGHRLCSDLMNCLHERARIEK-------AYAQQLTEWARRWRQLVEKG-PQYGTVEKAWMAFMSEAERV  100 (350)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHHHHH
Confidence            488899998888877777775433    1111       2233344444444321  11 12226888999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          122 EKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       122 ~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      +..+..|...+.+..+.||+.+..
T Consensus       101 a~~H~~la~~L~~~v~~~l~~~~~  124 (350)
T 3aco_A          101 SELHLEVKASLMNDDFEKIKNWQK  124 (350)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998864

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=96.34  E-value=0.37  Score=45.88  Aligned_cols=90  Identities=10%  Similarity=0.059  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhh----cccccCCCCCCchhhHHHHHHHHhhccC--CCCCCChHHHHHHHHHHHHHHH
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGV----EGYIVTGSKQVEIGTKLSEDSRKYGSDN--TCTSGNTLSKAALSYGRARAQM  121 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~----e~~~~~~~~~~e~~~~Lg~~m~~~g~e~--~~~~~s~~g~al~~~g~a~~~l  121 (373)
                      .+++.|+.+++....|.++|..-.    +...       +.+..|..-+.++..-.  + +....+..++..+-....++
T Consensus        20 ~g~~~l~~r~~~g~~~~~el~~f~keRa~iE~-------eYak~L~kLakk~~~~~~~~-~~~gtl~~aw~~~~~e~e~~   91 (337)
T 2x3v_A           20 GNYKRTVKRIDDGHRLCNDLMSCVQERAKIEK-------AYAQQLTDWAKRWRQLIEKG-PQYGSLERAWGAMMTEADKV   91 (337)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCC-CCCchHHHHHHHHHHHHHHH
Confidence            577788888877777776664432    2111       12223333333333200  1 02226778999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          122 EKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       122 ~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      +..+..+...+.+.+++||+.+..
T Consensus        92 a~~H~~~a~~L~~~v~~~l~~~~~  115 (337)
T 2x3v_A           92 SELHQEVKNSLLNEDLEKVKNWQK  115 (337)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998764

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=95.90  E-value=1.1  Score=42.58  Aligned_cols=187  Identities=16%  Similarity=0.145  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhh----cccccCCCCCCchhhHHHHHHHHh------hccCCCCCCChHHHHHHHHHHH
Q 017347           48 QRLERLYISTRAGKHFQRDIVRGV----EGYIVTGSKQVEIGTKLSEDSRKY------GSDNTCTSGNTLSKAALSYGRA  117 (373)
Q Consensus        48 ~~~e~l~~~~~~~k~~~~~i~r~~----e~~~~~~~~~~e~~~~Lg~~m~~~------g~e~~~~~~s~~g~al~~~g~a  117 (373)
                      .+++.|+.+++....+.+.|..-.    +...       +.+..|..-..+|      +.+.|     .+..++..+-..
T Consensus        20 ~g~~~l~~~~~~g~~~~~el~~f~keRa~iE~-------~Yak~L~kLakk~~~~~~~~~e~g-----sl~~aw~~i~~e   87 (320)
T 3m3w_A           20 GNYRRTVQRVEDGHRLCGDLVSCFQERARIEK-------AYAQQLADWARKWRGAVEKGPQYG-----TLEKAWHAFFTA   87 (320)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHSSCCH-----HHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCCCCCC-----hHHHHHHHHHHH
Confidence            578888888888777777764432    2111       1122233222222      23333     688899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHhc--------CCCchHHHHHHHHHHHHHHH-------HHHHHHHH-------HH
Q 017347          118 RAQMEKERGNLLKALGTQVAEPLRAMVL--------GAPLDDARHLAQRYDRMRQE-------AEAQAIEV-------SK  175 (373)
Q Consensus       118 ~~~l~~~~~~~~~~~~~~fl~PL~~~~~--------~~~lk~~~~~k~~y~~~r~~-------le~rrld~-------k~  175 (373)
                      ...++..+..+...+...++.||+.+..        + .+++.+.+...+.++.+.       |+.-+-.|       +.
T Consensus        88 ~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~-~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~  166 (320)
T 3m3w_A           88 AERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLG-GFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKT  166 (320)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998762        2 344432222222222222       22122222       11


Q ss_pred             Hhhhhc-----------cCCC----CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017347          176 RQAKVR-----------ETPG----NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE  240 (373)
Q Consensus       176 r~~K~~-----------e~~~----~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAq  240 (373)
                      .+.+.+           +-.+    ......++..|+.+|..+-..+......-...|..+-..-|.+--.++..|-+..
T Consensus       167 a~~~~~~~~~d~~~s~ke~~K~~~k~~k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l  246 (320)
T 3m3w_A          167 AQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVL  246 (320)
T ss_dssp             HHHHTTSCCSSCCC---CCSSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110000           0000    1122345666777777777666666666666665544333333344566666666


Q ss_pred             HHHHHHH
Q 017347          241 RTYHQRV  247 (373)
Q Consensus       241 l~Yh~q~  247 (373)
                      ..|+...
T Consensus       247 ~~~~~~~  253 (320)
T 3m3w_A          247 LTLHQHL  253 (320)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666543

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=95.58  E-value=1.1  Score=44.13  Aligned_cols=100  Identities=11%  Similarity=0.024  Sum_probs=64.1

Q ss_pred             HhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhc--cCCCCCCChHHHHHHHHHHHHHH
Q 017347           43 ELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS--DNTCTSGNTLSKAALSYGRARAQ  120 (373)
Q Consensus        43 e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~--e~~~~~~s~~g~al~~~g~a~~~  120 (373)
                      ++..+.+++.|..+++....|-++|..-.--=   ..---+.+..|..-+.+|..  .-|..+++.+..+...+-....+
T Consensus         7 ~lw~~~gf~~L~kr~~~g~~lledl~~F~reR---A~IE~eYAk~L~kLakk~~~k~~~~~~~~~tl~~aW~~ll~ete~   83 (406)
T 4dyl_A            7 ELCSPQGHGVLQQMQEAELRLLEGMRKWMAQR---VKSDREYAGLLHHMSLQDSGGQSRAISPDSPISQSWAEITSQTEG   83 (406)
T ss_dssp             HSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHH
T ss_pred             hhcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHHHHH
Confidence            44456788889888888888877775433100   00001223344444444433  11111335788999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          121 MEKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       121 l~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      ++..+..+...+....+.||..++.
T Consensus        84 ~a~~H~~lae~L~~~v~~~l~~~~k  108 (406)
T 4dyl_A           84 LSRLLRQHAEDLNSGPLSKLSLLIR  108 (406)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998885

>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}

Probab=95.23  E-value=1.9  Score=40.56  Aligned_cols=140  Identities=9%  Similarity=0.065  Sum_probs=84.0

Q ss_pred             HHHHHhh-ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Q 017347           90 EDSRKYG-SDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA  168 (373)
Q Consensus        90 ~~m~~~g-~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~  168 (373)
                      +.|.+|+ .++|     .|..+...+-.....++.....+...+...++.||+.|.+. +- ..+.+++    +-+.|+.
T Consensus       107 ee~~~~~~~e~G-----~l~~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~e~-~~-~~~e~~~----l~~~L~~  175 (287)
T 3g9g_A          107 QEMSAFRFNSLG-----ELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVEN-NT-SWRESKD----LHSKLSK  175 (287)
T ss_dssp             HHHHHCCCCCST-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSSSS-CH-HHHHHHH----HHHHHHH
T ss_pred             hhhccccccccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cH-HHHHHHH----HHHHHHH
Confidence            4455555 7777     78899999999999999999999999999999999999974 21 1112111    1222322


Q ss_pred             HHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          169 QAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVL  248 (373)
Q Consensus       169 rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~  248 (373)
                      -.-++-..+.|  .     ++...|..+...++...-.       +...+++.|.+.-.+.-..|..|.....++..+..
T Consensus       176 ~ak~le~~~kk--~-----~a~~~le~a~~qWes~aP~-------~fe~fQ~lEEeRL~~Lkd~L~~y~~~~sd~~~~~~  241 (287)
T 3g9g_A          176 NAASIEHYSKN--N-----ENSSHLEEARRQWDQQSPY-------LFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTT  241 (287)
T ss_dssp             HHHHHHHCSSC--C-----SCTHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh--H-----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111111  1     1233677777777655544       56666667666633334455666666666666544


Q ss_pred             HHHHHh
Q 017347          249 QILDQL  254 (373)
Q Consensus       249 ~iL~~L  254 (373)
                      +.-+.+
T Consensus       242 ~~~E~~  247 (287)
T 3g9g_A          242 KECETV  247 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            443333

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=94.76  E-value=0.044  Score=40.91  Aligned_cols=42  Identities=31%  Similarity=0.398  Sum_probs=35.2

Q ss_pred             cCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347          324 TLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       324 sl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~  366 (373)
                      .+..|+.+.|+... ++|++.+.+|..||+...||....+.|-
T Consensus        26 ~l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~~~~~~~   67 (74)
T 2krs_A           26 TLRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITIVNEGSL   67 (74)
T ss_dssp             EEETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEESSSSCC
T ss_pred             EECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCCCCCccc
Confidence            46678999998874 6899999999999999999988766553

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=93.86  E-value=4  Score=37.66  Aligned_cols=40  Identities=10%  Similarity=0.018  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      .+..++..+-.....++..+..+...+...++.||+.+..
T Consensus        64 s~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~  103 (290)
T 3i2w_A           64 TTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQK  103 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999885

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=93.83  E-value=0.078  Score=39.85  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=34.1

Q ss_pred             cCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          324 TLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       324 sl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      .+..|+.+.|+.. ..||+..+.+|..||+...||....+.+
T Consensus        28 ~l~~G~~v~vl~~-~~~W~kV~~~g~~GwV~~~yl~~~~~~~   68 (76)
T 2kt8_A           28 SLSGNTKVTIVGE-EGAFYKIEYKGSHGYVAKEYIKDIKDEV   68 (76)
T ss_dssp             EECTTCEEEEEEE-ETTEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             EECCCCEEEEEEE-eCCEEEEEECCEEEEEEhHHhCcCCCcc
Confidence            4667999999886 4689999999999999999998765543

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=92.85  E-value=0.058  Score=39.75  Aligned_cols=39  Identities=26%  Similarity=0.554  Sum_probs=31.9

Q ss_pred             cCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347          324 TLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR  363 (373)
Q Consensus       324 sl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~  363 (373)
                      .+..|+.+.|+.. .++|+..+.+|..||++..|+.....
T Consensus        27 ~l~~G~~v~v~~~-~~~W~~V~~~G~~GwV~~~~l~~~~~   65 (70)
T 2kq8_A           27 ALPQGQKVQVISE-NSGWSKINYNGQTGYIGTRYLSKLEH   65 (70)
T ss_dssp             CCCSSSSCCCCEE-ETTEEEEEETTEEEEEETTSCSCCCS
T ss_pred             EECCCCEEEEEEe-cCCEEEEEECCEEEEEEhHHccchhh
Confidence            4667788887776 46899999999999999999987643

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=89.03  E-value=0.15  Score=36.30  Aligned_cols=18  Identities=22%  Similarity=0.578  Sum_probs=14.8

Q ss_pred             CeeeEecCCCeeeccCCC
Q 017347          348 GKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       348 g~~G~fP~~Yve~l~~~p  365 (373)
                      |+.||||.+||+.+.+.+
T Consensus         2 g~~G~~P~~yv~~~~~~~   19 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSGT   19 (62)
T ss_dssp             CEEEEEEGGGEEECCCCS
T ss_pred             CCccccccceEeecCCCC
Confidence            789999999999875543

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=88.62  E-value=1.5  Score=32.22  Aligned_cols=49  Identities=24%  Similarity=0.307  Sum_probs=40.4

Q ss_pred             EEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe------CCeeeEecCCC
Q 017347          309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC------KGKAGWFPFGY  357 (373)
Q Consensus       309 ~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~------~g~~G~fP~~Y  357 (373)
                      ..|..||.+..+.|++...|+++.++..+.-+-+...+      ....||+|-.-
T Consensus        10 m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~v   64 (74)
T 1wfw_A           10 MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSI   64 (74)
T ss_dssp             EECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGG
T ss_pred             EEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccE
Confidence            56789999999999999999999999998777666655      23579999643

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=87.81  E-value=15  Score=32.98  Aligned_cols=29  Identities=14%  Similarity=0.208  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017347          230 LQRLIAMVEAERTYHQRVLQILDQLEGEM  258 (373)
Q Consensus       230 l~~L~~~veAql~Yh~q~~~iL~~L~~eL  258 (373)
                      ...|..|.+....|...|...+-.++..+
T Consensus       203 ~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f  231 (251)
T 2fic_A          203 QEELPSLWNSRVGFYVNTFQSIAGLEENF  231 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666666666666665555555444444

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=85.49  E-value=0.48  Score=35.19  Aligned_cols=23  Identities=22%  Similarity=0.039  Sum_probs=20.5

Q ss_pred             ceEEEEeccCCCCCCCCccCCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVG  328 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~g  328 (373)
                      ...++|+|||+++.++||+|.+.
T Consensus        52 ~~~~~alydy~a~~~dElsf~~~   74 (77)
T 2jmc_A           52 KELVLALYDYQESGDNAPSYSPP   74 (77)
T ss_dssp             CCEEEESSCCCCSSCCCCCSCCC
T ss_pred             CceEEECCCcCCCCCCccccCCC
Confidence            46799999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	373
d1i4da_	200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	9e-16
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-13
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	3e-13
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	6e-13
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	8e-13
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	9e-13
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	2e-12
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-12
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	7e-12
d1urua_	217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	9e-12
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	1e-11
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-11
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	4e-11
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	5e-11
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	6e-11
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	8e-11
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-11
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	2e-10
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-10
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	2e-10
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-10
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-10
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	6e-10
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	7e-10
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	7e-10
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	8e-10
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	1e-09
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	1e-09
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-09
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	2e-09
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	3e-09
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	3e-09
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	4e-09
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-09
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	3e-08
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	4e-08
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	1e-07
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	1e-07
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	2e-07
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	5e-07
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	6e-07
d2d4ca1	237	a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sap	1e-06
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-06
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	1e-05
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	2e-05
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-04
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	0.002

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 9e-16
 Identities = 30/215 (13%), Positives = 72/215 (33%), Gaps = 17/215 (7%)

Query: 39  TDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSD 98
           T + EL     +E L    R  K     +++            ++    L +        
Sbjct: 3   TVDLELELQ--IELL----RETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQK 56

Query: 99  NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR 158
           +       L +        +  + K    LL A+   V+      ++   ++D     ++
Sbjct: 57  SP-----ELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINT--LVTKTMEDTLMTVKQ 109

Query: 159 YDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAM 218
           Y+  R E +A   ++ +     R+         +L++A+      +     L  + A  +
Sbjct: 110 YEAARLEYDAYRTDLEELSLGPRDAGTRG----RLESAQATFQAHRDKYEKLRGDVAIKL 165

Query: 219 AAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQ 253
             +E  + ++  ++L+    A   Y     + L+Q
Sbjct: 166 KFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQ 200

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 299 GSTDAMG--YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFG 356
           GS+ + G    + +    ++  ++ EL++  GD + V +V   GW EG   G+ GWFP  
Sbjct: 1   GSSGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSN 60

Query: 357 YIE 359
           Y+ 
Sbjct: 61  YVR 63

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (150), Expect = 3e-13
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + +  +  + D EL    GD++ V   ++  W +G C G+ G FP  Y+ 
Sbjct: 5   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 54

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 60.8 bits (148), Expect = 6e-13
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            +  +  +   EL    GD + +    +  W EG+   + G FP  Y+ 
Sbjct: 7   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (147), Expect = 8e-13
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 310 EVV---HPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
           E+V   + YQ +S  E+T+  GD + +   TN  W + E   + G+ P  Y+++
Sbjct: 1   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 54

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (147), Expect = 9e-13
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++ ++A  + EL    G+ V V   +N  W  G    K G FP  Y+ 
Sbjct: 6   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           E +  Y+A    +L    GD ++V    N  W EGE KGK G FP  ++E
Sbjct: 9   EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (143), Expect = 3e-12
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358
           GS+ + G      ++PY +    +LT + G+ ++V +  +  W  G    ++G FP  Y+
Sbjct: 1   GSSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYV 59

Query: 359 ERRD 362
           + +D
Sbjct: 60  KPKD 63

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (140), Expect = 7e-12
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++ ++A  D ELT   G+ + V   ++  W +GE     G FP  ++ 
Sbjct: 7   ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.7 bits (149), Expect = 9e-12
 Identities = 30/221 (13%), Positives = 61/221 (27%), Gaps = 21/221 (9%)

Query: 47  HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT 106
              L        +    Q++       YI            L +   +            
Sbjct: 15  DDHLNNFNRQQASANRLQKE----FNNYIRCVRAAQAASKTLMDSVCEIYEP-------- 62

Query: 107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166
                 +        E    +    LG QV  PL          + +   ++ +R   + 
Sbjct: 63  QWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNT--YTGQFPEMKKKVEKRNRKLIDY 120

Query: 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQ 226
           + Q          ++         +KL     +L + +    IL  E    + A+   + 
Sbjct: 121 DGQ----RHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRI 176

Query: 227 RLTLQRLIAMVEAERTYHQRVLQILDQLEGEM---LSERQR 264
              +  L  +   E+ +H    +I  +LE  +    +E QR
Sbjct: 177 LFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQR 217

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKMA 370
            +  Y A    E++L  G+ V V     +GW         G+FP  Y+++  + ++    
Sbjct: 19  AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQR 78

Query: 371 EV 372
           ++
Sbjct: 79  QI 80

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++ Y A ++ EL+ S G  + V    +  W +GE  G  G FP  Y++
Sbjct: 39  AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 87

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 299 GSTDAMG--YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN-NGWAEGECKGKAGWFPF 355
           GS+ + G  +   + ++  +AE D EL+ + G        +   GW EG   GK G  P 
Sbjct: 1   GSSGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPE 60

Query: 356 GYIE 359
            Y+E
Sbjct: 61  NYVE 64

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (133), Expect = 5e-11
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECKGKAGWFPFGYIERR 361
             + ++A +D EL+   GD + V+ +  +  W + E  GK G+ P  YIE +
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (133), Expect = 6e-11
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIER 360
            +  +    + +L    GD + +R      W   E  +GK G  P  Y+E+
Sbjct: 6   ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 8e-11
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 300 STDAMGYFLGEVVHPYQAESDVELTLSVGDYVVV----RKVTNNGWAEGECKGKAGWFPF 355
            ++A G  +   V+ ++A +  EL++S    + +        N  W   E  GK G+ P 
Sbjct: 7   GSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPS 66

Query: 356 GYIERRD 362
            YI + +
Sbjct: 67  NYIRKTE 73

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 8e-11
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
           + +  + A+ D  L  S  D + V +     W  GE  G  GWFP  Y++
Sbjct: 14  QALCSWTAKKDNHLNFSKHDIITVLE-QQENWWFGEVHGGRGWFPKSYVK 62

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 311 VVHPYQAESDVELTLSVGDYVVV-RKVTNNGWAEGECKGKAGWFPFGYIERRD 362
            ++ + A  D  L+++ G+ + V     N  W E + K   GW P  YI   +
Sbjct: 5   ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 57

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 2e-10
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYV--VVRKVTNNGWAEGECKGKAGWFPFG 356
           GS+ + GY     ++P++A +  E++ + GD +    + V   GW  G  +G  GWFP  
Sbjct: 1   GSSGSSGY---RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCN 57

Query: 357 YIERRD 362
           Y+E+  
Sbjct: 58  YVEKMP 63

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTN--NGWAEGECKGKAGWFPFGYIE 359
            ++ +  E   +L    GD + + K ++  N W  G   G+ G FP  Y+E
Sbjct: 6   ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
             + Y A  D ELT    D ++  +  ++ W  GE +  G  G FP  Y+ 
Sbjct: 5   AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKA-GWFPFGYIER 360
            +  Y+A+ + ELT      +   +    GW  G+  GK   WFP  Y+E 
Sbjct: 11  ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 309 GEVV--HPYQAESDVELTLSVGDYVVVRKVTN---NGWAEGECKGKAGWFPFGYIE 359
           G +     Y+ ++D EL +  GD + +    +     W       K G+ P   + 
Sbjct: 5   GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 60

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW-AEGECKGKAGWFPFGYIER 360
            +H Y+   D +L    G+ + + + +   W A+    G+ G+ PF ++ +
Sbjct: 11  ALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGW-AEGECKGKAGWFPFGYIERRDRV 364
           ++ Y+A    +L+   GD +VV + +   W A      K G+ P  Y+ R D +
Sbjct: 10  LYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSL 63

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 8e-10
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE--CKGKAGWFPFGYIERRD 362
            ++ Y++ ++ +L+   G+ + +   T   W        G+ G+ P  Y+   D
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 362
            +  Y+  S  E+ LS GD V V + + +GW   + K K GW P  ++E  D
Sbjct: 7   AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 58

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERRD 362
            ++ Y   +  +L L  GD   + + +N  W     K G+ G+ P  Y+   +
Sbjct: 13  ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
            ++ Y A    E++   GD ++  +  + GW  G  +  G+ G  P  Y+E
Sbjct: 8   AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVV-VRKVTNNGWAEGECK-GKAGWFPFGYIERRDRV 364
             + +   ++ +L    GD +  V    +  W + + K G+ G  P  Y+++R+ V
Sbjct: 11  AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV 66

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 312 VHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERRD 362
           ++ +QA    +L L  G   ++ +  +  W     K G  G+ P  Y+  + 
Sbjct: 8   MYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGW--AEGECKGKAGWFPFGYIER 360
            ++ Y+A ++ +L+   G+   +   +   W  A     G+ G+ P  Y+  
Sbjct: 5   ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 4e-09
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359
            +  Y A    E++L  G+ V V     +GW         G+FP  Y++
Sbjct: 5   AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 8e-09
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-----KGKAGWF 353
           GS+ + G    +V   Y A    +L+L+ G  +++ K   +GW +GE      K + GWF
Sbjct: 1   GSSGSSGEI-AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWF 59

Query: 354 PFGYIE 359
           P  +++
Sbjct: 60  PASHVK 65

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 3e-08
 Identities = 8/50 (16%), Positives = 19/50 (38%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360
             + + A +  EL++   D + +       W      G +G+ P   ++ 
Sbjct: 6   SKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 4e-08
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 314 PYQAESDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIE 359
           P        L L+ GD V + +    + W EG      + GWFP   + 
Sbjct: 18  PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTN---NGWAEGECKGKAGWFPFGYIE 359
            ++P+ + ++ EL    G+ + V +        W     +G+ G  P  Y+ 
Sbjct: 11  TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 62

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGE-CKGKAGWFPFGYIE 359
            ++ YQ     EL L   +   +   +   W   +   G  G+ P  Y+ 
Sbjct: 3   ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNN-----GWAEG----------ECKGKAGWFP 354
           +  H Y A    EL L  GD V+V    N      GW  G          E +   G FP
Sbjct: 16  QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 75

Query: 355 FGYIER 360
             + ER
Sbjct: 76  ENFTER 81

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 311 VVHPYQAESDVELTLSVGDYV-VVRKVTNNG--WAEGECKGKAGWFPFGYIE 359
           V++ Y  + D E+T++ GD + +V + T +G      +  G+ G  P  YI 
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (104), Expect = 6e-07
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 311 VVHPYQA-ESDVELTLSVGDYVVV------RKVTNNGWAEGECKGKAGWFPFGYIE 359
            ++ +     ++E+ L  GD + +          ++ W      G  G+ P+ YIE
Sbjct: 10  ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 65

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168
            A    G A  ++ + + +L   +     +PL+ +       D R +        ++ E 
Sbjct: 102 PALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK----DLREIQSALQHHLKKLEG 157

Query: 169 QAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL 228
           + ++   ++ +  +              + +L           + A ++M  +       
Sbjct: 158 RRLDFDYKKKRQGK------------IPDEELRQALEKFDESKEIAESSMFNLLEMDIEQ 205

Query: 229 TLQRLIAMVEAERTYHQRVLQILDQLEGEM 258
            + +L A+V+A+  YH++ +QIL Q+   +
Sbjct: 206 -VSQLSALVQAQLEYHKQAVQILQQVTVRL 234

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 310 EVVHPYQAE-SDVELTLSVGDYV-VVRKVTNNGWAEGECK--GKAGWFPFGYIERRD 362
           + + P+ A  +   L+ + GD + ++     +GW  GE       GWFP  Y +   
Sbjct: 11  KTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 17/71 (23%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVTN---------------NGWAEG--ECKGKAGWF 353
            ++ Y+ E + ++ L +GD + V K +                 GW  G  E  G+ G F
Sbjct: 8   ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 67

Query: 354 PFGYIERRDRV 364
           P  Y+E   R 
Sbjct: 68  PGTYVEYIGRK 78

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 299 GSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGW------AEGECKGKAGW 352
           GS+ + G  +  V+  Y A  + E+ +S G+ V V  V           A        GW
Sbjct: 1   GSSGSSGSTM-TVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGW 59

Query: 353 FPFGYIE 359
            P   + 
Sbjct: 60  VPGSILA 66

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 311 VVHPYQAESDVELTLSVGDYVVVRKVT----NNGWAEGECKGKAGWFPFGYIERRDRVLA 366
               + A  D++++L  GD V V K      +      +     G+    +++  +   +
Sbjct: 22  AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS 81

Query: 367 SKMA 370
              A
Sbjct: 82  HSDA 85

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 317 AESDVELTLSVGDYV-VVRKVTNNGWAEGE-CKGKAGWFPFGYIER 360
              + EL L+ G Y+ V   +  +G+ EGE   G+ G  P  +++ 
Sbjct: 34  ENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDF 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	373
d2d4ca1	237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.66
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.64
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.63
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.63
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.63
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.62
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.62
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.6
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.6
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.59
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.59
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.59
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.58
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.57
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.56
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.56
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.56
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.55
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.55
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.55
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.55
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	99.54
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.53
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.52
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.52
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.52
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.52
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.51
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.51
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.51
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.51
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	99.51
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.5
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.49
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.49
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.49
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.48
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.48
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.48
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.45
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.45
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.44
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.41
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.38
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.36
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.35
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	99.3
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.28
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.21
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.94
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	96.01
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	95.43
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.82
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	93.55
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	92.56

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-19  Score=165.30  Aligned_cols=213  Identities=17%  Similarity=0.240  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCC----------------
Q 017347           16 ARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGS----------------   79 (373)
Q Consensus        16 a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~----------------   79 (373)
                      .|++|.|..++|++     |.+-.|+    .+..+|   ...+.++.+.++|.|.+..++.+++                
T Consensus         1 nR~~q~~~ek~G~~-----e~T~ld~----~f~~lE---k~~~~~~~~~~kl~k~~~~y~~~~~~~~~~~~~~~~~~~~~   68 (237)
T d2d4ca1           1 HKATQKVSEKVGGA-----EGTKLDD----DFKEME---RKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIR   68 (237)
T ss_dssp             CHHHHHHHHHHTSH-----HHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHCCSGGGCSCC----------
T ss_pred             CchhHHHHhHcCCC-----CcCCCCH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhhc
Confidence            38899999999932     2221122    233333   3444444566677776666554321                


Q ss_pred             ------CCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH
Q 017347           80 ------KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR  153 (373)
Q Consensus        80 ------~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~  153 (373)
                            .-....+.||++|..+|.++|  +++.+|.+|.+||+++..|+..+..|+..+...|+.||+.|++. +++.+ 
T Consensus        69 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--~d~~~~~~L~~~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~-d~~~~-  144 (237)
T d2d4ca1          69 GQEKGPGYPQAEALLAEAMLKFGRELG--DDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK-DLREI-  144 (237)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHC--SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-HHHHH-
T ss_pred             ccccccchhhhhHHHHHHHHHhcccCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-
Confidence                  011123479999999999999  99999999999999999999999999999999999999999986 66654 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH-HHHHHHHHH
Q 017347          154 HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQR  232 (373)
Q Consensus       154 ~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~-~~~~~~l~~  232 (373)
                        ++.+.+.|+.++..|++|.+.+.+...     ..+.+|+.|+.+|+++.+.       +...|..+.. ..+.  +..
T Consensus       145 --~~~~~~~rk~~d~~~~~~~~~~~k~~~-----~~~e~l~~a~~~~e~~~~~-------~~~~l~~l~~~~~~~--~~~  208 (237)
T d2d4ca1         145 --QSALQHHLKKLEGRRLDFDYKKKRQGK-----IPDEELRQALEKFDESKEI-------AESSMFNLLEMDIEQ--VSQ  208 (237)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHSS-----CCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHccHHH--HHH
Confidence              455678899999999999433333221     2367999999999999999       7888876532 2222  889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347          233 LIAMVEAERTYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       233 L~~~veAql~Yh~q~~~iL~~L~~eL~s  260 (373)
                      |..|++||++||+.+.++|.+|...|.+
T Consensus       209 l~~~~~aq~~y~~~~~~~l~~l~~~l~~  236 (237)
T d2d4ca1         209 LSALVQAQLEYHKQAVQILQQVTVRLEE  236 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999998864

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=7.2e-17  Score=115.87  Aligned_cols=55  Identities=25%  Similarity=0.430  Sum_probs=52.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ..|+|+|||.+++++||+|.+||+|.|++..++|||.|+.+|+.||||++||+++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            4799999999999999999999999999999999999999999999999999976

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.64  E-value=1.4e-16  Score=114.67  Aligned_cols=56  Identities=20%  Similarity=0.417  Sum_probs=53.2

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ...|+|||||.++.+++|+|.+||+|.|++..++|||.|+++|+.||||++||+.+
T Consensus         2 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            35799999999999999999999999999999999999999999999999999965

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-16  Score=113.20  Aligned_cols=54  Identities=26%  Similarity=0.621  Sum_probs=51.7

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      .|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            689999999999999999999999999999999999999999999999999864

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.2e-16  Score=113.74  Aligned_cols=55  Identities=24%  Similarity=0.422  Sum_probs=52.2

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      .++|+|+|||.++.++||+|.+||+|.|++..++|||.|+++|+.||||++||+.
T Consensus         2 ~rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           2 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            3689999999999999999999999999999999999999999999999999973

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-16  Score=126.62  Aligned_cols=61  Identities=25%  Similarity=0.406  Sum_probs=56.4

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ...+|+|||||++++++||+|.+||+|.|++..++|||.|+++|+.||||+|||+.+.+.+
T Consensus        33 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~~   93 (98)
T d1udla_          33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             CSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             CccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCCCC
Confidence            3467999999999999999999999999999999999999999999999999999987543

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=3.3e-16  Score=111.54  Aligned_cols=54  Identities=28%  Similarity=0.497  Sum_probs=51.5

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      .++|+|||+++.++||+|.+||+|.|++..++|||.|+++|+.||||+|||+.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            478999999999999999999999999999999999999999999999999864

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=3.4e-16  Score=112.71  Aligned_cols=56  Identities=27%  Similarity=0.454  Sum_probs=52.4

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~  362 (373)
                      |.|+|+|||.+..++||+|.+||+|.|++..++|||.|++  +|+.||||+|||+.++
T Consensus         1 P~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~in   58 (58)
T d1jo8a_           1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEcC
Confidence            4699999999999999999999999999999999999998  7899999999999763

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3e-16  Score=119.19  Aligned_cols=60  Identities=27%  Similarity=0.635  Sum_probs=55.6

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ....++|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~~   68 (76)
T d1ujya_           9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCHH
T ss_pred             CCEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCCC
Confidence            346799999999999999999999999999999999999999999999999999988643

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.7e-16  Score=113.45  Aligned_cols=56  Identities=34%  Similarity=0.557  Sum_probs=52.9

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ...++|||+|.+..+++|+|.+||+|.|++..++|||.|+++|+.||||++||+..
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            35799999999999999999999999999999999999999999999999999864

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=7.2e-16  Score=110.97  Aligned_cols=55  Identities=25%  Similarity=0.506  Sum_probs=50.9

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      |+|+|+|||.+++++||+|.+||+|.|++..  +.|||.|.++|+.||||.+||+.+
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            5799999999999999999999999999886  458999999999999999999875

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.2e-16  Score=112.83  Aligned_cols=56  Identities=32%  Similarity=0.552  Sum_probs=53.0

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ..++|+|||.+.++++|+|++||+|.|++..++|||.|+++|+.||||++||+.++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~ld   58 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD   58 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEECc
Confidence            46899999999999999999999999999999999999999999999999998763

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-15  Score=115.53  Aligned_cols=59  Identities=25%  Similarity=0.491  Sum_probs=54.0

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ...+|+|||||.+..++||+|.+||+|.|++. +++||.|+++|+.||||.|||+.+...
T Consensus         9 ~~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_           9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CCeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCCC
Confidence            34689999999999999999999999999988 569999999999999999999998654

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-15  Score=108.05  Aligned_cols=51  Identities=25%  Similarity=0.370  Sum_probs=49.3

Q ss_pred             EEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCee
Q 017347          309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE  359 (373)
Q Consensus       309 ~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve  359 (373)
                      .+|+|+|.++.++||+|.+||+|.|+++.++|||.|+++|+.||||++||+
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            579999999999999999999999999999999999999999999999996

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.7e-15  Score=115.81  Aligned_cols=62  Identities=24%  Similarity=0.378  Sum_probs=56.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec----CCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT----NNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~----~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ...++|||||.+..++||+|.+||+|.|++..    ++|||.|+++|+.||||++||+.+.+.|.+
T Consensus        13 ~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~pss   78 (79)
T d1uhca_          13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS   78 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSCCC
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCCCCC
Confidence            34689999999999999999999999999864    468999999999999999999999887754

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-15  Score=113.26  Aligned_cols=62  Identities=24%  Similarity=0.426  Sum_probs=55.7

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCch
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLAS  367 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~~  367 (373)
                      ....++|+|||.+..++||+|.+||+|.|++. +++||.|+++|+.||||.+||+.+...|.+
T Consensus         7 ~~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~~pss   68 (69)
T d1uhfa_           7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS   68 (69)
T ss_dssp             CSEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCCCC
T ss_pred             CCcEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCCCCCC
Confidence            44678999999999999999999999999987 568999999999999999999998766653

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.2e-15  Score=122.62  Aligned_cols=56  Identities=23%  Similarity=0.316  Sum_probs=53.2

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      ..++|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+.
T Consensus        15 ~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~   70 (118)
T d1ng2a2          15 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSG   70 (118)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETT
T ss_pred             cEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECC
Confidence            46889999999999999999999999999999999999999999999999999864

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.5e-15  Score=113.05  Aligned_cols=60  Identities=25%  Similarity=0.513  Sum_probs=54.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC-----CeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-----GKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~-----g~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|||+|++..++||+|.+||+|.|++..++|||.|++.     |+.||||.+||+.+.+.+
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~   71 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSS   71 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCCC
Confidence            357999999999999999999999999999999999999874     468999999999986543

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.3e-15  Score=111.21  Aligned_cols=62  Identities=18%  Similarity=0.325  Sum_probs=54.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEe-CCeeeEecCCCeeeccCCCc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGEC-KGKAGWFPFGYIERRDRVLA  366 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~-~g~~G~fP~~Yve~l~~~p~  366 (373)
                      ....|+|+|||.++.++||+|.+||+|.|+...  ++|||.|+. +|+.||||.|||+.+...|+
T Consensus         5 ~l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~p~   69 (71)
T d1u5sa1           5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   69 (71)
T ss_dssp             SSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCC
T ss_pred             ccEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCCCC
Confidence            346799999999999999999999999999875  348999986 89999999999999977664

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-15  Score=108.68  Aligned_cols=53  Identities=30%  Similarity=0.509  Sum_probs=45.6

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEee-cCCCeEEEEeCCeeeEecCCCeee
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIER  360 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~-~~~gW~~G~~~g~~G~fP~~Yve~  360 (373)
                      .|+|+|||.+.+++||+|.+||+|.|++. .+++||.|.++|+.||||+|||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            58999999999999999999999998876 467899999999999999999975

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.6e-15  Score=109.84  Aligned_cols=55  Identities=24%  Similarity=0.486  Sum_probs=51.5

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      ..++|+|||.+++++||+|.+||+|.|+...++|||.|.+  +|+.||||+|||+.+
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            3589999999999999999999999999999999999998  789999999999874

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.9e-15  Score=107.38  Aligned_cols=53  Identities=23%  Similarity=0.532  Sum_probs=50.5

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeee
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  360 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~  360 (373)
                      .++|+|||.++.+++|+|.+||+|.|++..++|||.|+. +|+.||||++||+.
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            689999999999999999999999999999999999997 78999999999985

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.2e-15  Score=113.16  Aligned_cols=59  Identities=27%  Similarity=0.457  Sum_probs=53.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|||||.+..++||+|.+||+|.|++.. +++||.|+++|+.||||.+||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~p   69 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCCC
Confidence            35699999999999999999999999988876 457999999999999999999998653

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2.3e-15  Score=111.43  Aligned_cols=57  Identities=21%  Similarity=0.477  Sum_probs=50.1

Q ss_pred             CceEEEEeccCCCCCC-CCccCCCCCEEEEEeecC-----CCeEEEEe-CCeeeEecCCCeeec
Q 017347          305 GYFLGEVVHPYQAESD-VELTLSVGDYVVVRKVTN-----NGWAEGEC-KGKAGWFPFGYIERR  361 (373)
Q Consensus       305 ~~~~~~alydf~a~~~-~ELsl~~gd~I~V~~~~~-----~gW~~G~~-~g~~G~fP~~Yve~l  361 (373)
                      ....|+|+|||.+.++ .||+|.+||+|.|+++.+     +|||.|+. +|+.||||+|||+.+
T Consensus         4 ~~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           4 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             cCEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            3457999999999876 599999999999998764     58999997 899999999999875

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2e-12  Score=118.35  Aligned_cols=173  Identities=11%  Similarity=0.092  Sum_probs=114.9

Q ss_pred             HHHHHHHHhhccCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 017347           87 KLSEDSRKYGSDNT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE  165 (373)
Q Consensus        87 ~Lg~~m~~~g~e~~-~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~  165 (373)
                      .++++|.++|.... ..++..+|.+|++||.+++.|+..++.|...+..+|+.||+.++++ +++.+.+.+++|++.++.
T Consensus        51 ~f~dal~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i~~~~~~l~~~~~~~~i~PL~~~~~~-d~k~i~~~kK~~~k~~k~  129 (248)
T d1y2oa1          51 GYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVEL-DSRYLSAALKKYQTEQRS  129 (248)
T ss_dssp             HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            69999999986421 1245679999999999999999999999999999999999999998 999999777778765544


Q ss_pred             HH----HHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017347          166 AE----AQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAER  241 (373)
Q Consensus       166 le----~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql  241 (373)
                      +.    ..+-++++.+.|.+..........+...+.+-+......+..+..++.....-.+...-.+.+.+|.+|+++++
T Consensus       130 ~~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~eerkr~~~lv~~l~~~~~a~~  209 (248)
T d1y2oa1         130 KGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSA  209 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33    22223322222212111111223344444444444443333222222222111122222233689999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHH
Q 017347          242 TYHQRVLQILDQLEGEMLS  260 (373)
Q Consensus       242 ~Yh~q~~~iL~~L~~eL~s  260 (373)
                      +||.+++++++++...|..
T Consensus       210 ~~~~q~~~~l~~~~~~~~~  228 (248)
T d1y2oa1         210 AYHSKGKELLAQKLPLWQQ  228 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999887

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.53  E-value=3.9e-15  Score=105.05  Aligned_cols=52  Identities=19%  Similarity=0.305  Sum_probs=48.7

Q ss_pred             EEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeee
Q 017347          309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIER  360 (373)
Q Consensus       309 ~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~  360 (373)
                      ++|+|||.+..++||+|.+||+|.|++..++|||.|+. +|+.||||+|||+.
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            57999999999999999999999999999999999985 88999999999973

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=6.7e-15  Score=110.43  Aligned_cols=57  Identities=25%  Similarity=0.468  Sum_probs=49.9

Q ss_pred             eEEEEeccCCCC-CCCCccCCCCCEEEEEee-cCCCeEEEEe--CCeeeEecCCCeeeccC
Q 017347          307 FLGEVVHPYQAE-SDVELTLSVGDYVVVRKV-TNNGWAEGEC--KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       307 ~~~~alydf~a~-~~~ELsl~~gd~I~V~~~-~~~gW~~G~~--~g~~G~fP~~Yve~l~~  363 (373)
                      .+|+|||||++. +++||+|.+||+|.|+.. .++|||.|++  .|+.||||+|||+.+..
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            579999999985 578999999999999865 4678999998  48999999999999865

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=8.2e-15  Score=104.95  Aligned_cols=55  Identities=27%  Similarity=0.505  Sum_probs=49.6

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCC-CeEEEEeCCeeeEecCCCeeecc
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGECKGKAGWFPFGYIERRD  362 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~-gW~~G~~~g~~G~fP~~Yve~l~  362 (373)
                      .++|||||.+..++||+|.+||+|.|++..++ +||.|+.+|+.||||++||+.++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~vd   57 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN   57 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESS
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEECC
Confidence            47899999999999999999999999988655 58889999999999999999763

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=8.5e-15  Score=108.30  Aligned_cols=58  Identities=17%  Similarity=0.326  Sum_probs=53.0

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCCC
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~p  365 (373)
                      .++|+|||.+.+++||+|.+||+|.|+...+.+||.|.. +|+.||||++||+.+.+..
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~~   62 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNN   62 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTTT
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCCC
Confidence            589999999999999999999999999999999999986 7899999999999875543

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.2e-15  Score=107.74  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=50.5

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecC---CCeEEEEeCCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTN---NGWAEGECKGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~---~gW~~G~~~g~~G~fP~~Yve~l  361 (373)
                      ...++|+|||.+++++||+|.+||+|.|++..+   .|||.|+++|+.||||++||+.+
T Consensus         4 ~g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           4 KGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             CCEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            346899999999999999999999999998753   47999999999999999999865

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=5.3e-15  Score=106.70  Aligned_cols=56  Identities=14%  Similarity=0.236  Sum_probs=50.8

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~  363 (373)
                      ..|+|+|||.+++++||+|.+||+|.|++.. ++||.+.. +|+.||||+|||+.+.+
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            4699999999999999999999999999875 58999986 89999999999998754

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.1e-15  Score=110.76  Aligned_cols=59  Identities=19%  Similarity=0.317  Sum_probs=53.8

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccC
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~  363 (373)
                      ....++|+|+|.+.+++||+|.+||+|.|++..+.+||.|.. +|+.||||++||+.+.+
T Consensus         7 ~~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CCEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            446799999999999999999999999999999999999986 88999999999987653

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.9e-15  Score=113.15  Aligned_cols=59  Identities=24%  Similarity=0.409  Sum_probs=52.4

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~  364 (373)
                      ...|+|||+|++.+++||+|.+||+|.|++..++|||.|++ ++..||||+|||+.+.+.
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            45699999999999999999999999999999999999988 445569999999987554

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-14  Score=114.20  Aligned_cols=59  Identities=29%  Similarity=0.609  Sum_probs=53.0

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~~~  364 (373)
                      ..+++|||||.+++++||+|.+||+|.|+.+.  +.+||.|.++|+.||||+|||+.+...
T Consensus         5 ~~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCC
Confidence            34689999999999999999999999999875  567999999999999999999987543

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-14  Score=108.18  Aligned_cols=59  Identities=20%  Similarity=0.438  Sum_probs=52.3

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEe-CCeeeEecCCCeeeccCCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~-~g~~G~fP~~Yve~l~~~p  365 (373)
                      ..|+|+|||.+.+++||+|.+||+|.|+... +++||.|+. .|+.||||.+||+.+....
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~~~   67 (71)
T d1k9aa1           7 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK   67 (71)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCC
T ss_pred             CEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEcccCC
Confidence            4699999999999999999999999999875 567999988 5899999999999876543

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.1e-13  Score=117.69  Aligned_cols=185  Identities=14%  Similarity=0.178  Sum_probs=132.5

Q ss_pred             hhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017347           58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA  137 (373)
Q Consensus        58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl  137 (373)
                      +.+..+.++|++.++.+......-......||.++...|...+     ..+.++..+|++...|+..+..+...+.. ++
T Consensus        16 ~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~   89 (200)
T d1i4da_          16 RETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP-----ELQEEFGYNAETQKLLCKNGETLLGAVNF-FV   89 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            3334455555555555443211112223368888888887655     67899999999999999999998877755 55


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017347          138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAA  217 (373)
Q Consensus       138 ~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~  217 (373)
                      .||..++.+ +++++++..++|++.+.+++..|..+.+.+.+.+..    ....++..|+.+++++++.+..++.++...
T Consensus        90 ~~l~~~~~~-~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~~----~~~~kl~~ae~~~~~a~~~fe~~~~~~~~~  164 (200)
T d1i4da_          90 SSINTLVTK-TMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDA----GTRGRLESAQATFQAHRDKYEKLRGDVAIK  164 (200)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccc----chhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777776 899999888889888888888888884332221111    112478888888888888888888889999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          218 MAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQ  253 (373)
Q Consensus       218 m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~  253 (373)
                      |..++..+....+.+|..|++++..||.+|+..|++
T Consensus       165 l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~~~~le~  200 (200)
T d1i4da_         165 LKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQ  200 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            998877776666889999999999999999998853

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.3e-14  Score=106.33  Aligned_cols=57  Identities=18%  Similarity=0.455  Sum_probs=52.5

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccCC
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~~  364 (373)
                      ..+|+|||++..++||+|.+||+|.|++..++|||.|+.  +|+.||||.+||+.+..+
T Consensus         4 ~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s~   62 (64)
T d1fmka1           4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (64)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             EEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECccC
Confidence            478999999999999999999999999999999999987  689999999999987644

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-14  Score=102.57  Aligned_cols=54  Identities=20%  Similarity=0.450  Sum_probs=50.1

Q ss_pred             EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      .++|+|||.+.+++||+|++||+|.|++..++|||.+.+  +|+.||||+|||+++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            367999999999999999999999999999999999987  789999999999864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.5e-14  Score=107.79  Aligned_cols=60  Identities=20%  Similarity=0.175  Sum_probs=53.8

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe------CCeeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC------KGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~------~g~~G~fP~~Yve~l~~~p  365 (373)
                      ...++|||||.+..++||+|.+||+|.|++..++|||.++.      +|+.||||.+||+.+....
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~ps   72 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGPS   72 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCSTT
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCCCC
Confidence            35799999999999999999999999999999999999986      3689999999999886543

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2e-14  Score=113.64  Aligned_cols=61  Identities=25%  Similarity=0.395  Sum_probs=51.4

Q ss_pred             CceEEEEeccCCCCC------CCCccCCCCCEEEEEeec-CCCeEEEEe-CCeeeEecCCCeeeccCCC
Q 017347          305 GYFLGEVVHPYQAES------DVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       305 ~~~~~~alydf~a~~------~~ELsl~~gd~I~V~~~~-~~gW~~G~~-~g~~G~fP~~Yve~l~~~p  365 (373)
                      ....|+|+|||++..      ++||+|++||+|.|+... +++||.+.. +|+.||||+|||+.+...+
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~~   84 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCcc
Confidence            457899999998754      589999999999999775 456999976 8999999999999886443

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.6e-15  Score=113.35  Aligned_cols=57  Identities=30%  Similarity=0.547  Sum_probs=51.6

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeec---------------CCCeEEEEe--CCeeeEecCCCeeeccC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT---------------NNGWAEGEC--KGKAGWFPFGYIERRDR  363 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~---------------~~gW~~G~~--~g~~G~fP~~Yve~l~~  363 (373)
                      ..++|||+|.+..++||+|.+||+|.|+...               ++|||.|++  +|+.||||.|||+.+.+
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   77 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCC
Confidence            5799999999999999999999999999752               468999987  89999999999999865

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.5e-14  Score=112.31  Aligned_cols=59  Identities=17%  Similarity=0.145  Sum_probs=53.6

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecC----CCeEEEEeCCeeeEecCCCeeeccCCC
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTN----NGWAEGECKGKAGWFPFGYIERRDRVL  365 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~----~gW~~G~~~g~~G~fP~~Yve~l~~~p  365 (373)
                      ..++|+|+|++..++||+|.+||+|.|+++.+    .|||.++++|+.||||+|||+.+.+..
T Consensus        18 ~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~~   80 (92)
T d1ug1a_          18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCS
T ss_pred             eEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCcc
Confidence            46899999999999999999999999999853    689999999999999999999886543

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=2.2e-14  Score=110.50  Aligned_cols=58  Identities=33%  Similarity=0.480  Sum_probs=50.9

Q ss_pred             CceEEEEeccCCCCCCCCccCCCCCEEEEEeec-----CCCeEEEEe----------CCeeeEecCCCeeecc
Q 017347          305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-----NNGWAEGEC----------KGKAGWFPFGYIERRD  362 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-----~~gW~~G~~----------~g~~G~fP~~Yve~l~  362 (373)
                      ....|+|+|+|++.+++||+|.+||+|.|++..     ++|||.|..          +|+.||||+|||+.++
T Consensus        11 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          11 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             CCEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            456899999999999999999999999999864     468999986          3679999999999863

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.3e-14  Score=102.52  Aligned_cols=58  Identities=24%  Similarity=0.458  Sum_probs=51.1

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDRV  364 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~~  364 (373)
                      ...++|+|||.++.++||+|.+||+|.|++. +++||.+.+  +|+.||||+|||+.++.+
T Consensus         4 ~~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~~   63 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSL   63 (65)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTCG
T ss_pred             cEEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECccC
Confidence            3568999999999999999999999999986 567988876  789999999999987654

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=4e-14  Score=100.90  Aligned_cols=52  Identities=27%  Similarity=0.522  Sum_probs=45.7

Q ss_pred             EEEeccCCCCCCCCccCCCCCEEEEEeecCC-CeEEEEe--CCeeeEecCCCeee
Q 017347          309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC--KGKAGWFPFGYIER  360 (373)
Q Consensus       309 ~~alydf~a~~~~ELsl~~gd~I~V~~~~~~-gW~~G~~--~g~~G~fP~~Yve~  360 (373)
                      ++|||||.+++++||+|.+||+|.|++..+. +||.+..  +|+.||||+|||++
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            7999999999999999999999999988655 4666655  79999999999974

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=9e-14  Score=103.22  Aligned_cols=56  Identities=29%  Similarity=0.469  Sum_probs=48.5

Q ss_pred             ceEEEEeccCCC------CCCCCccCCCCCEEEEEee-cCCCeEEEEe--CCeeeEecCCCeeec
Q 017347          306 YFLGEVVHPYQA------ESDVELTLSVGDYVVVRKV-TNNGWAEGEC--KGKAGWFPFGYIERR  361 (373)
Q Consensus       306 ~~~~~alydf~a------~~~~ELsl~~gd~I~V~~~-~~~gW~~G~~--~g~~G~fP~~Yve~l  361 (373)
                      .++++|+++|.+      .+++||+|.+||+|.|++. .++|||.|++  +|+.||||+|||+..
T Consensus         4 ~Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           4 MPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CCEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            456888888865      6789999999999999975 5679999997  799999999999875

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.2e-13  Score=98.99  Aligned_cols=53  Identities=21%  Similarity=0.560  Sum_probs=47.2

Q ss_pred             eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeee
Q 017347          307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIER  360 (373)
Q Consensus       307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~  360 (373)
                      ..++|+|||.+..++||+|.+||+|.|+...+ +||.+..  +|+.||||++||+.
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            46999999999999999999999999998864 6777665  78999999999974

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.38  E-value=1.8e-13  Score=107.69  Aligned_cols=54  Identities=20%  Similarity=0.332  Sum_probs=49.6

Q ss_pred             CceEEEEeccCCCCCCCC-------ccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecCCCe
Q 017347          305 GYFLGEVVHPYQAESDVE-------LTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYI  358 (373)
Q Consensus       305 ~~~~~~alydf~a~~~~E-------Lsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~~Yv  358 (373)
                      ....|+|+|||++..+++       |+|.+||+|.|++..++|||.|++   +|..||||++|+
T Consensus        20 ~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          20 VAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             ccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            346799999999999998       999999999999999999999998   688999999874

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.7e-13  Score=107.55  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=51.8

Q ss_pred             ceEEEEeccCCCCCCCCccCCCCCEEEEEee---cCCCeEEEEeCC--------eeeEecCCCeeeccCCC
Q 017347          306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKV---TNNGWAEGECKG--------KAGWFPFGYIERRDRVL  365 (373)
Q Consensus       306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~---~~~gW~~G~~~g--------~~G~fP~~Yve~l~~~p  365 (373)
                      ...|+|+|||.+.++++|+|++||+|.|+++   .+.+||.|...|        +.||||+|||+.+....
T Consensus        21 ~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~~   91 (106)
T d1i1ja_          21 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLK   91 (106)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECS
T ss_pred             eeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccccC
Confidence            3579999999999999999999999999987   467899998744        58999999999875443

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=7.9e-14  Score=110.12  Aligned_cols=55  Identities=18%  Similarity=0.343  Sum_probs=48.9

Q ss_pred             eEEEEeccCCCCC-----CCCccCCCCCEEEEEeecCCCeEEEEe------CCeeeEecCCCeeec
Q 017347          307 FLGEVVHPYQAES-----DVELTLSVGDYVVVRKVTNNGWAEGEC------KGKAGWFPFGYIERR  361 (373)
Q Consensus       307 ~~~~alydf~a~~-----~~ELsl~~gd~I~V~~~~~~gW~~G~~------~g~~G~fP~~Yve~l  361 (373)
                      +.++|+|||+++.     +.||+|++||+|.|+...++|||.|+.      +|+.||||+|||+..
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            5789999999975     458999999999999999999999985      678999999999753

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=1.2e-10  Score=102.92  Aligned_cols=162  Identities=16%  Similarity=0.198  Sum_probs=115.2

Q ss_pred             hhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017347           85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ  164 (373)
Q Consensus        85 ~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~  164 (373)
                      ...+|.++...+...+  +      +...+..+...++....++...+...|+.||+.++.  .++++++..++.++.+.
T Consensus        49 ~~~~~~~l~~l~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~pL~~~~~--~~~~~~~~~kkr~~~~~  118 (217)
T d1urua_          49 SKTLMDSVCEIYEPQW--S------GYDALQAQTGASESLWADFAHKLGDQVLIPLNTYTG--QFPEMKKKVEKRNRKLI  118 (217)
T ss_dssp             HHHHHHHHHHHSCTTS--T------THHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc--c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence            3368888888877766  2      233445566777788889999999999999999996  68888855554555566


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          165 EAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYH  244 (373)
Q Consensus       165 ~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh  244 (373)
                      .++..+-.+.+...|....    ....++..++.+++.+++.+..++.++...|..............|..|+.++..||
T Consensus       119 dyd~~~~~l~k~~~k~~~~----~~~~~l~~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~  194 (217)
T d1urua_         119 DYDGQRHSFQNLQANANKR----KDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFH  194 (217)
T ss_dssp             HHHHHHHHHHHHHTTTCBT----TBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccc----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665555552222121111    011245556666666666666666669999988777666666889999999999999


Q ss_pred             HHHHHHHHHhHHHHHH
Q 017347          245 QRVLQILDQLEGEMLS  260 (373)
Q Consensus       245 ~q~~~iL~~L~~eL~s  260 (373)
                      .++.+++.+|...+..
T Consensus       195 ~~~~~~~~~l~~~~~~  210 (217)
T d1urua_         195 NETAKIYSELEAIVDK  210 (217)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6e-11  Score=109.22  Aligned_cols=193  Identities=10%  Similarity=0.105  Sum_probs=130.2

Q ss_pred             HHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 017347           51 ERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNL  128 (373)
Q Consensus        51 e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~--~~~~s~~g~al~~~g~a~~~l~~~~~~~  128 (373)
                      ..+-...+..+.|.+++++.+..+.+-+.-.......+.+.+..++.+.+  +.++..+|.+|.+||.+.+.|...+..+
T Consensus        19 ~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~L~~~~~~~~~~~~dd~~~~~~l~~f~~~~~el~~~~~~l   98 (268)
T d2elba1          19 GVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVL   98 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555566666666655543211111112246677777776532  1245678999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 017347          129 LKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMA  208 (373)
Q Consensus       129 ~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~  208 (373)
                      ...+...++.||..|+.+ +++.+++.+++|++.+.++++-.-.|.+...+...+....+++.+|..+...|..+.-+  
T Consensus        99 ~~~~~~~~~~pL~~f~~~-di~~~ke~kk~fek~~~~yd~~l~k~~~~~k~k~~~~~~~Ea~~~l~~~r~~f~~~~~d--  175 (268)
T d2elba1          99 STQLADAMMFPITQFKER-DLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMH--  175 (268)
T ss_dssp             HHHHHHHTHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-----HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchhhhhHHHHHHHHHHHHHHHHHH--
Confidence            999999999999999998 99999988888999999888877766332222111111123345566666666666555  


Q ss_pred             HhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347          209 ILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL  251 (373)
Q Consensus       209 ~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL  251 (373)
                           ....|..+........+..|..|+.++.+|++++.+++
T Consensus       176 -----~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff~~~~~~l  213 (268)
T d2elba1         176 -----YFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL  213 (268)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 56666666554444458899999999999999998876

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=5.8e-12  Score=106.62  Aligned_cols=53  Identities=19%  Similarity=0.349  Sum_probs=49.1

Q ss_pred             ceEEEEeccCCCCCCCC-------ccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecCCCe
Q 017347          306 YFLGEVVHPYQAESDVE-------LTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYI  358 (373)
Q Consensus       306 ~~~~~alydf~a~~~~E-------Lsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~~Yv  358 (373)
                      .++|+|+|||++..+++       |+|.+||+|.|++..++|||.|++   +|..||||++|+
T Consensus        23 ~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          23 AFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             CEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            35799999999999987       999999999999999999999998   799999999874

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=2e-10  Score=95.80  Aligned_cols=53  Identities=19%  Similarity=0.312  Sum_probs=48.1

Q ss_pred             ceEEEEeccCCCCCCCC-------ccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecCCCe
Q 017347          306 YFLGEVVHPYQAESDVE-------LTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPFGYI  358 (373)
Q Consensus       306 ~~~~~alydf~a~~~~E-------Lsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~~Yv  358 (373)
                      .+.++++|||++..+++       |+|..||+|.|++..+++||.|++   +|..||||++|+
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            46799999999988877       899999999999999999999997   678999999884

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.4  Score=41.30  Aligned_cols=41  Identities=10%  Similarity=0.051  Sum_probs=36.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347          105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      ..+..++..+-+....++.....+...+...++.||..++.
T Consensus        58 ~s~~~~~~~~~~~~~~~a~~~~~~~~~l~~~i~~~l~~~~~   98 (279)
T d2efka1          58 FSQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQ   98 (279)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888888889999999999999999999999999986

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0078  Score=43.70  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=36.3

Q ss_pred             CCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCe
Q 017347          319 SDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYI  358 (373)
Q Consensus       319 ~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yv  358 (373)
                      ...+|++++||.|.|+...+.|=|.|+. .|+.|+||.++|
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            3568999999999999999999999998 999999998876

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=1  Score=38.58  Aligned_cols=94  Identities=16%  Similarity=0.139  Sum_probs=55.8

Q ss_pred             HHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC----CCCCChHHHHHHHHHHHHHHHHHH
Q 017347           49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT----CTSGNTLSKAALSYGRARAQMEKE  124 (373)
Q Consensus        49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~----~~~~s~~g~al~~~g~a~~~l~~~  124 (373)
                      ++|.|..+++....+.+.|..-..---..   --+.+..|..-+-+|.....    ......+..++..+-.....++..
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~eRa~i---E~eYak~L~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   86 (288)
T d2efla1          10 QFDNLEKHTQWGIDILEKYIKFVKERTEI---ELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQ   86 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhccccccccccCcHHHHHHHHHHHHHHHHHH
Confidence            56677777766666665554333211000   01112223333333332111    012235667888888888899999


Q ss_pred             HHHHHHHHhhhhhHHHHHHhc
Q 017347          125 RGNLLKALGTQVAEPLRAMVL  145 (373)
Q Consensus       125 ~~~~~~~~~~~fl~PL~~~~~  145 (373)
                      ...+...+...+++||..++.
T Consensus        87 h~~~a~~l~~~i~~~l~~~~~  107 (288)
T d2efla1          87 HEVISENMASQIIVDLARYVQ  107 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999875

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=1.3  Score=35.95  Aligned_cols=95  Identities=12%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 017347          106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG  185 (373)
Q Consensus       106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~  185 (373)
                      .+|.++..++.....+-..-..+...+..-+...+.....  -++.......+||+.+.+++..+..  .+..+  ...+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~kk~~~~~~dyd~~~~k~~~~~~~--~~~~~--~~~k  139 (200)
T d1i4da_          66 YNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLM--TVKQYEAARLEYDAYRTDLEELSLG--PRDAG--TRGR  139 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHhhc--ccccc--hhhh
Confidence            4677777777766666655555555555555555554442  1222226677888888777643322  12111  1223


Q ss_pred             CcchHHHHHHHHHHHHHHHHH
Q 017347          186 NPDLALKLDAAEVKLHDLKSN  206 (373)
Q Consensus       186 ~~~~~~eL~~ae~K~~e~~e~  206 (373)
                      ..+++.+++.|+.+|+.....
T Consensus       140 l~~ae~~~~~a~~~fe~~~~~  160 (200)
T d1i4da_         140 LESAQATFQAHRDKYEKLRGD  160 (200)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            445677889999998887544

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.56  E-value=2.2  Score=34.83  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=59.7

Q ss_pred             hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHH
Q 017347           84 IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM  162 (373)
Q Consensus        84 ~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~  162 (373)
                      .++-|.+.....|....     .+......++.....+.. ....++.-+.. |+.-+.....  .++.-......|++.
T Consensus        52 ~~~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~pL~~-~~~~~~~~~~--~~kkr~~~~~dyd~~  123 (217)
T d1urua_          52 LMDSVCEIYEPQWSGYD-----ALQAQTGASESLWADFAHKLGDQVLIPLNT-YTGQFPEMKK--KVEKRNRKLIDYDGQ  123 (217)
T ss_dssp             HHHHHHHHSCTTSTTHH-----HHHHHHHHHHHHHHHHHHHHHTTTHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHH--HHHHHHHHHHHHHHH
Confidence            34445555555555554     344444444444444333 33333333332 4444333332  222222667789998


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 017347          163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN  206 (373)
Q Consensus       163 r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~  206 (373)
                      +..++..+    .+..+.++......++.++..|..+|+...+.
T Consensus       124 ~~~l~k~~----~k~~~~~~~~~l~~~e~~~~~a~~~fe~~~~~  163 (217)
T d1urua_         124 RHSFQNLQ----ANANKRKDDVKLTKGREQLEEARRTYEILNTE  163 (217)
T ss_dssp             HHHHHHHH----TTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----hccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            88887533    33333344444556688999999999988655