Citrus Sinensis ID: 017369
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LHQ7 | 370 | mRNA cap guanine-N7 methy | yes | no | 0.994 | 1.0 | 0.843 | 0.0 | |
| Q6Z9U7 | 369 | mRNA cap guanine-N7 methy | yes | no | 0.986 | 0.994 | 0.728 | 1e-158 | |
| O74880 | 360 | mRNA cap guanine-N7 methy | yes | no | 0.771 | 0.797 | 0.418 | 7e-59 | |
| P0CO65 | 700 | mRNA cap guanine-N7 methy | N/A | no | 0.760 | 0.404 | 0.404 | 2e-53 | |
| P0CO64 | 700 | mRNA cap guanine-N7 methy | yes | no | 0.760 | 0.404 | 0.404 | 2e-53 | |
| Q1MTD3 | 400 | mRNA cap guanine-N7 methy | yes | no | 0.787 | 0.732 | 0.376 | 3e-53 | |
| Q4R7K1 | 476 | mRNA cap guanine-N7 methy | N/A | no | 0.776 | 0.607 | 0.356 | 5e-50 | |
| O43148 | 476 | mRNA cap guanine-N7 methy | yes | no | 0.776 | 0.607 | 0.356 | 3e-49 | |
| Q5U2U7 | 461 | mRNA cap guanine-N7 methy | yes | no | 0.776 | 0.626 | 0.353 | 2e-48 | |
| Q6CKI0 | 426 | mRNA cap guanine-N7 methy | yes | no | 0.771 | 0.673 | 0.386 | 4e-48 |
| >sp|Q9LHQ7|MCES1_ARATH mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana GN=At3g20650 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/370 (84%), Positives = 339/370 (91%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG SPSSS PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1 MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYAR D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR EE++ K
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYSQK 240
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KFKSS PFGI+Y FHLEDAVDCPEWIVPF++FKSLAEEYDLELVFVKNSHEFVHEY+KKP
Sbjct: 241 KFKSSSPFGIEYVFHLEDAVDCPEWIVPFNVFKSLAEEYDLELVFVKNSHEFVHEYMKKP 300
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E++ELMRRLGALGDG+ DQSTLSADEWE AYLYL+FVLRKRG+ DG R SG+R GKM +
Sbjct: 301 EFVELMRRLGALGDGSNDQSTLSADEWEAAYLYLSFVLRKRGESDGARRSGRRKNGKMNL 360
Query: 361 SKEDIMYVHS 370
SK+D++Y+ S
Sbjct: 361 SKDDVLYIDS 370
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mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 6 |
| >sp|Q6Z9U7|MCES1_ORYSJ mRNA cap guanine-N7 methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os08g0180000 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/368 (72%), Positives = 301/368 (81%), Gaps = 1/368 (0%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
M + R PSSS +R G + AR+VADHYS R+NQTLEERE
Sbjct: 1 MNKRPRDEPSSSFASAPKRQYGAGGGGYGGHGYSEERSSARRVADHYSARSNQTLEEREN 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYA GD VLDLACGKGGDLIKWDKAK+GYYVG+DIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
+DC TRYNGD D QRRKKFSFPARLIC DCYE LD+ L +DAPFDICSCQFA+HYSWS
Sbjct: 121 KDCMTRYNGDTDQ-QRRKKFSFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWS 179
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARAR+ALANVSALLRPGG FIGTMPDANVIIK+LRE +G+ GN VYWI EE+A+K
Sbjct: 180 TEARARQALANVSALLRPGGVFIGTMPDANVIIKRLRETDGMEFGNGVYWISFGEEYAEK 239
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KF +SRPFGI+YKFHLEDAVDCPEW+VPFH+FK LAEEYDLELV KN HEFVHEYL+KP
Sbjct: 240 KFPASRPFGIKYKFHLEDAVDCPEWVVPFHLFKLLAEEYDLELVLTKNFHEFVHEYLQKP 299
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E+ ELMRRLGALGDG QDQSTLS DEWEVAYLYLAFVLRKRGQP R + ++GKM++
Sbjct: 300 EFAELMRRLGALGDGRQDQSTLSQDEWEVAYLYLAFVLRKRGQPPSQRRANNANRGKMFL 359
Query: 361 SKEDIMYV 368
++ DI ++
Sbjct: 360 TENDIDFL 367
|
mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 EC: 6 |
| >sp|O74880|MCES_SCHPO mRNA cap guanine-N7 methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pcm1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 182/308 (59%), Gaps = 21/308 (6%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGD----VVLDLACGKGGD 98
V HY+ R + ++R+ SPII LK+ NNWIKSVL+Q +A +VLD+ CGKGGD
Sbjct: 65 VRSHYNARPDLGYKKRQFSPIIQLKRFNNWIKSVLIQKFAPHASDYPILVLDMGCGKGGD 124
Query: 99 LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158
LIKWDKA I Y+GIDIAE S+ + RY R SF A GDC+ +++
Sbjct: 125 LIKWDKAGIDGYIGIDIAEVSVNQAKKRY--------REMHASFDALFYAGDCFSSSINE 176
Query: 159 VLADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
+L D FD+ S QF MHY++ +E + R L NVS L GG IGT+P+++VI+K ++
Sbjct: 177 LLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGNVSKCLPRGGVMIGTIPNSDVIVKHIK 236
Query: 218 EVEG--LAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV-DCPEWIVPFHIFKS 274
++ GN +Y +R E + F+ P+GIQY F+LEDAV D PE++VPF F++
Sbjct: 237 MLKPGEKEWGNDIYKVRFPES-PPRSFRP--PYGIQYYFYLEDAVTDVPEYVVPFEAFRA 293
Query: 275 LAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYL 334
+AE Y+LEL++VK + ++E Y LM R+ + N+ + E E A YL
Sbjct: 294 VAEGYNLELIWVKPFLDILNEEKNSETYGPLMDRMKVV--DNEGHRGIGGQEKEAAGFYL 351
Query: 335 AFVLRKRG 342
AF KRG
Sbjct: 352 AFAFEKRG 359
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Responsible for methylating the 5'-cap structure of mRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 EC: 6 |
| >sp|P0CO65|MCES_CRYNB mRNA cap guanine-N7 methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ABD1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 175/304 (57%), Gaps = 21/304 (6%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRG-DVVLDLACGKGGDLIK 101
VA+HY+ R +E RE SPII LKK NNWIKSVL+ +A R VLD+ CGKGGDL K
Sbjct: 411 VAEHYNSRPEVGVERREFSPIIGLKKFNNWIKSVLIGKFAYRPRGKVLDVGCGKGGDLNK 470
Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
W +A+I YVG+D+A+ S++ AD ++R K F A DC+ L VL+
Sbjct: 471 WKQARIALYVGLDVADQSVQQA-------ADRYRRMPKPGFDAFFYAHDCFSNPLSDVLS 523
Query: 162 DDAP----FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
+ +D + QF MHY++ A+AR + NVS LR GG FIGT+P+A ++++
Sbjct: 524 PELQIKDLYDNVTMQFCMHYAFENAAKARMMIENVSRYLRRGGIFIGTIPNAELLLQLPD 583
Query: 218 EVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV-DCPEWIVPFHIFKSLA 276
E L GNS Y I +F +++ K +G Y+F+L DAV D PE++V + F SLA
Sbjct: 584 RDEELRFGNSCYSI----QFTERRHKGV--YGHDYRFYLTDAVEDVPEYLVDWENFVSLA 637
Query: 277 EEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAF 336
E L LV+ K HE + E ++ L+ ++G L + +S + AD+WE A LY+ F
Sbjct: 638 SESGLRLVYKKAFHEILQEEKDSRDFGPLLGKMGVLNE--YGESAMDADQWEAANLYMGF 695
Query: 337 VLRK 340
K
Sbjct: 696 AFEK 699
|
Responsible for methylating the 5'-cap structure of mRNAs. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 EC: 6 |
| >sp|P0CO64|MCES_CRYNJ mRNA cap guanine-N7 methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ABD1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 175/304 (57%), Gaps = 21/304 (6%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRG-DVVLDLACGKGGDLIK 101
VA+HY+ R +E RE SPII LKK NNWIKSVL+ +A R VLD+ CGKGGDL K
Sbjct: 411 VAEHYNSRPEVGVERREFSPIIGLKKFNNWIKSVLIGKFAYRPRGKVLDVGCGKGGDLNK 470
Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
W +A+I YVG+D+A+ S++ AD ++R K F A DC+ L VL+
Sbjct: 471 WKQARIALYVGLDVADQSVQQA-------ADRYRRMPKPGFDAFFYAHDCFSNPLSDVLS 523
Query: 162 DDAP----FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
+ +D + QF MHY++ A+AR + NVS LR GG FIGT+P+A ++++
Sbjct: 524 PELQIKDLYDNVTMQFCMHYAFENAAKARMMIENVSRYLRRGGIFIGTIPNAELLLQLPD 583
Query: 218 EVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV-DCPEWIVPFHIFKSLA 276
E L GNS Y I +F +++ K +G Y+F+L DAV D PE++V + F SLA
Sbjct: 584 RDEELRFGNSCYSI----QFTERRHKGV--YGHDYRFYLTDAVEDVPEYLVDWENFVSLA 637
Query: 277 EEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAF 336
E L LV+ K HE + E ++ L+ ++G L + +S + AD+WE A LY+ F
Sbjct: 638 SESGLRLVYKKAFHEILQEEKDSRDFGPLLGKMGVLNE--YGESAMDADQWEAANLYMGF 695
Query: 337 VLRK 340
K
Sbjct: 696 AFEK 699
|
Responsible for methylating the 5'-cap structure of mRNAs. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 EC: 6 |
| >sp|Q1MTD3|MCES_DANRE mRNA cap guanine-N7 methyltransferase OS=Danio rerio GN=rnmt PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 174/337 (51%), Gaps = 44/337 (13%)
Query: 40 ARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQ------LYARRGDVVLDLAC 93
++KVA HY++ L ER S I++++ NNW+KSVL+ RR VLDL C
Sbjct: 70 SQKVATHYNKIKECGLAERNKSRIVYMRNFNNWLKSVLIAEILDKVRQKRREVTVLDLGC 129
Query: 94 GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153
GKGGDL+KW K +I V DIA SIE C+ RYN D +F A I DC
Sbjct: 130 GKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYN-DVRRRGHPNDRTFSAEFITADCSR 188
Query: 154 VHLDKVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212
L + L D + FD+CSCQF HYS+ +E++A L N LRPGG FIGT PDA +
Sbjct: 189 ELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLRPGGFFIGTTPDAYEL 248
Query: 213 IKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHI 271
+K+L E + + GN V+ + + K P FG QY F LE V+ PE++V F +
Sbjct: 249 VKRLEESDSNSFGNEVFSVTFQK-------KGEYPLFGCQYDFSLEGVVNVPEFLVYFPL 301
Query: 272 FKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGAL--------------GDGNQ 317
F +A++Y++ LV+ K EF E +K + +LM+ + AL G G
Sbjct: 302 FVEMAKKYNMRLVYKKTFKEFFEEKVKDGKNKDLMQWMQALEQYPPDERGQLSSSGPGEY 361
Query: 318 DQS--------------TLSADEWEVAYLYLAFVLRK 340
D + TLS EWE +YL +V K
Sbjct: 362 DHAKRKAADPAVRRPLGTLSKSEWEATSIYLVYVFEK 398
|
mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 EC: 6 |
| >sp|Q4R7K1|MCES_MACFA mRNA cap guanine-N7 methyltransferase OS=Macaca fascicularis GN=RNMT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 171/337 (50%), Gaps = 48/337 (14%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY-------ARRGDVVLDLACGK 95
VA HY+ LE+R S I +L+ NNW+KSVL+ + +R VLDL CGK
Sbjct: 149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 208
Query: 96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
GGDL+KW K +I V DIA+ SI+ C+ RY D RR ++ F A I DC E
Sbjct: 209 GGDLLKWKKGRINKLVCTDIADVSIKQCQQRYE---DMKNRRDSEYIFSAEFITADCSKE 265
Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
+ ++K FDICSCQF HYS+ + +A L N L PGG FIGT P++ +I
Sbjct: 266 LLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI 325
Query: 214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIF 272
++L E + GN +Y ++ + K P FG +Y F+LE VD PE++V F +
Sbjct: 326 RRLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLEGVVDVPEFLVYFPLL 378
Query: 273 KSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQS------------ 320
+A++Y+++LV+ K EF E +K E L++R+ AL ++S
Sbjct: 379 NEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSERVDDYE 438
Query: 321 ----------------TLSADEWEVAYLYLAFVLRKR 341
TLS EWE +YL F K+
Sbjct: 439 HAAKYMKNSQVKLPLGTLSKSEWEATSIYLVFAFEKQ 475
|
mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 EC: 6 |
| >sp|O43148|MCES_HUMAN mRNA cap guanine-N7 methyltransferase OS=Homo sapiens GN=RNMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 170/337 (50%), Gaps = 48/337 (14%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVL-------VQLYARRGDVVLDLACGK 95
VA HY+ LE+R S I +L+ NNW+KSVL V+ +R VLDL CGK
Sbjct: 149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 208
Query: 96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
GGDL+KW K +I V DIA+ S++ C+ RY D RR ++ F A I D E
Sbjct: 209 GGDLLKWKKGRINKLVCTDIADVSVKQCQQRYE---DMKNRRDSEYIFSAEFITADSSKE 265
Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
+ +DK FDICSCQF HYS+ + +A L N L PGG FIGT P++ +I
Sbjct: 266 LLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI 325
Query: 214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIF 272
++L E + GN +Y ++ + K P FG +Y F+LE VD PE++V F +
Sbjct: 326 RRLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLEGVVDVPEFLVYFPLL 378
Query: 273 KSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQS------------ 320
+A++Y+++LV+ K EF E +K E L++R+ AL ++S
Sbjct: 379 NEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYE 438
Query: 321 ----------------TLSADEWEVAYLYLAFVLRKR 341
TLS EWE +YL F K+
Sbjct: 439 HAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQ 475
|
mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 EC: 6 |
| >sp|Q5U2U7|MCES_RAT mRNA cap guanine-N7 methyltransferase OS=Rattus norvegicus GN=Rnmt PE=2 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 172/337 (51%), Gaps = 48/337 (14%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVL-------VQLYARRGDVVLDLACGK 95
VA HY+ L +R S I +L+ NNWIKS+L V+ R VLDL CGK
Sbjct: 134 VAAHYNELQEVGLVKRSQSRIFYLRNFNNWIKSILIGEILEKVRQRKNRDITVLDLGCGK 193
Query: 96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
GGDL+KW K +I V DIA+ S++ C+ RY D RR ++ F A I DC E
Sbjct: 194 GGDLLKWRKGRISRLVCADIADISMKQCQQRYE---DMKCRRDNEYIFSAEFITADCSKE 250
Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
+ ++K + FDICSCQFA HYS+ + +A L N L PGG FIGT P++ +I
Sbjct: 251 LLVEKFHDPEMYFDICSCQFACHYSFESLEQADMMLRNACGRLNPGGYFIGTTPNSFELI 310
Query: 214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIF 272
++L E + GN +Y ++ + K + P FG +Y F+LE VD PE++V F +
Sbjct: 311 RRLEASETESFGNEIYTVKFQK-------KGNYPLFGCKYDFNLEGVVDVPEFLVYFPLL 363
Query: 273 KSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGD--GNQDQ----------- 319
+A++Y+++L++ K EF E +K E L++R+ AL N++
Sbjct: 364 TEMAKKYNMKLIYKKTFLEFYEEKIKNNENKMLLKRMQALESYPANENSKLASEKAGDYA 423
Query: 320 ---------------STLSADEWEVAYLYLAFVLRKR 341
TLS EWE +YL F K+
Sbjct: 424 HAAEYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQ 460
|
mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 EC: 6 |
| >sp|Q6CKI0|MCES_KLULA mRNA cap guanine-N7 methyltransferase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ABD1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (488), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 167/313 (53%), Gaps = 26/313 (8%)
Query: 43 VADHYSRRTNQTLE-EREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
V HY+ RT + + R SPII L+ NN IK +L+ + R GDVVL+LACGKGGDL K
Sbjct: 119 VRQHYNERTFLSKKHNRNYSPIIKLRNFNNAIKYILIDKFTRAGDVVLELACGKGGDLRK 178
Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY----EVHLD 157
+ A I ++GIDI+ SI + RY+ K + LI GDC+ V ++
Sbjct: 179 YGAAGISQFIGIDISNASITEALKRYHS-------MKNLEYQVILITGDCFGESLGVAVE 231
Query: 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
P DI SCQFA+HY++ TE +ARR L NV L+ GG F GT+PD+ I K+
Sbjct: 232 SFPECRFPCDIVSCQFALHYAFETEEKARRMLLNVVKSLKIGGYFFGTIPDSEFIRYKMN 291
Query: 218 E----VEGLAIGNSVYWIRL-DEEFADKKFKSSRPFGIQYKFHLEDAVD-CPEWIVPFHI 271
+ VE + GNS+Y + + E+ + PFG Y F LEDA+D PE+++PF
Sbjct: 292 KIPESVEKPSWGNSIYKVTFSNNEYQKNGNEFPSPFGQMYTFWLEDAIDNVPEYVIPFES 351
Query: 272 FKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIEL----MRRLGALGDGNQDQSTLSADEW 327
F+SLA+EY +EL K +EF E + P ++ MR DG + +
Sbjct: 352 FRSLADEYGMELELQKGFNEFFVEEI--PNWVNRFSPKMREGLKRSDGRYGVEGVEKE-- 407
Query: 328 EVAYLYLAFVLRK 340
AY Y F RK
Sbjct: 408 PAAYFYTTFAFRK 420
|
Responsible for methylating the 5'-cap structure of mRNAs. Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | ||||||
| 225461191 | 372 | PREDICTED: mRNA cap guanine-N7 methyltra | 0.989 | 0.989 | 0.885 | 0.0 | |
| 356526183 | 371 | PREDICTED: mRNA cap guanine-N7 methyltra | 0.997 | 1.0 | 0.843 | 0.0 | |
| 356517255 | 372 | PREDICTED: mRNA cap guanine-N7 methyltra | 0.997 | 0.997 | 0.846 | 0.0 | |
| 255574992 | 367 | mRNA (guanine-7-)methyltransferase, puta | 0.981 | 0.994 | 0.846 | 0.0 | |
| 449468524 | 370 | PREDICTED: mRNA cap guanine-N7 methyltra | 0.994 | 1.0 | 0.840 | 0.0 | |
| 297835020 | 370 | mRNA capping enzyme family protein [Arab | 0.994 | 1.0 | 0.848 | 0.0 | |
| 42565060 | 370 | mRNA cap guanine-N7 methyltransferase 1 | 0.994 | 1.0 | 0.843 | 0.0 | |
| 357511455 | 372 | mRNA cap guanine-N7 methyltransferase [M | 0.997 | 0.997 | 0.816 | 0.0 | |
| 42572501 | 369 | mRNA cap guanine-N7 methyltransferase 1 | 0.991 | 1.0 | 0.840 | 0.0 | |
| 224117368 | 369 | predicted protein [Populus trichocarpa] | 0.986 | 0.994 | 0.794 | 1e-178 |
| >gi|225461191|ref|XP_002283163.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1 [Vitis vinifera] gi|302143175|emb|CBI20470.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/368 (88%), Positives = 346/368 (94%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG+ SPS+S GPP RF+ NPEGDS FLEDESTK FARKVADHYS RTNQTLEEREA
Sbjct: 1 MKRGYTESPSTSLGPPHSRFRHNPEGDSQFLEDESTKNFARKVADHYSARTNQTLEEREA 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
EDCRTRYNGDADHHQRRKKF+FPARLICGDC+EV LD+VL DDAPFDICSCQFAMHYSWS
Sbjct: 121 EDCRTRYNGDADHHQRRKKFTFPARLICGDCFEVPLDRVLEDDAPFDICSCQFAMHYSWS 180
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGLAIGNSVYWIR DE+F+ K
Sbjct: 181 TEARARRALANVSALLRPGGIFIGTMPDANVIIKKLREAEGLAIGNSVYWIRFDEDFSKK 240
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KFK+S PFGI+YKFHLEDAVDCPEWIVPFH+FKSLAEEYDL+LV VKNSHEFV EYLKKP
Sbjct: 241 KFKTSSPFGIKYKFHLEDAVDCPEWIVPFHVFKSLAEEYDLDLVLVKNSHEFVDEYLKKP 300
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E++ELMRRLGALGDGNQDQ+TLS DEWEVAYLYLAFVLRKRGQPD T+V+G+RDKG+M I
Sbjct: 301 EFVELMRRLGALGDGNQDQTTLSQDEWEVAYLYLAFVLRKRGQPDRTQVNGRRDKGQMQI 360
Query: 361 SKEDIMYV 368
SKEDIMYV
Sbjct: 361 SKEDIMYV 368
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526183|ref|XP_003531699.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/371 (84%), Positives = 344/371 (92%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG++ S S+S GPP R + +P+G +HFLEDESTK+FARKVADHYS R+NQTLEEREA
Sbjct: 1 MKRGYQESHSTSLGPPQSRARHDPQGSAHFLEDESTKIFARKVADHYSARSNQTLEEREA 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
+DCRTRYNGDADHHQRRKKF+FPARLICGDCYEV LDKVLADDAPFD+CSCQFA+HYSWS
Sbjct: 121 KDCRTRYNGDADHHQRRKKFTFPARLICGDCYEVRLDKVLADDAPFDLCSCQFALHYSWS 180
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TE RAR+ALANVSALLRPGG FIGTMPDANVIIKKLRE EGL GNSVYW+R DEEF+DK
Sbjct: 181 TEVRARQALANVSALLRPGGIFIGTMPDANVIIKKLREAEGLTFGNSVYWVRFDEEFSDK 240
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KFKSS PFGI+Y FHLEDAVDCPEWIVPFHIFKSLAEEYD ELVF KNSHEFVHEY+KKP
Sbjct: 241 KFKSSSPFGIKYTFHLEDAVDCPEWIVPFHIFKSLAEEYDFELVFAKNSHEFVHEYMKKP 300
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E++ELMRRLGALGDGNQDQSTLSADEWE AYLY++FVLRKRGQPD T+ S ++D+G M+I
Sbjct: 301 EFVELMRRLGALGDGNQDQSTLSADEWEAAYLYMSFVLRKRGQPDKTQSSSRKDRGSMHI 360
Query: 361 SKEDIMYVHSD 371
S+EDIMY+ +D
Sbjct: 361 SEEDIMYISTD 371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517255|ref|XP_003527304.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/371 (84%), Positives = 345/371 (92%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG++ SPSSS GPP R + +P+G +HF+EDESTK+FARKVADHYS R+NQTLEEREA
Sbjct: 1 MKRGYQESPSSSLGPPHSRARHDPQGGAHFVEDESTKIFARKVADHYSARSNQTLEEREA 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
+DCRTRYNGDADHHQRRKKF+FPARLICGDCYEV LDKVLADDAPFDICSCQFA+HYSWS
Sbjct: 121 KDCRTRYNGDADHHQRRKKFTFPARLICGDCYEVRLDKVLADDAPFDICSCQFALHYSWS 180
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARAR+ALANVSALLRPGG FIGTMPDANVIIKKLRE EGL GN VYW+R DEEF+DK
Sbjct: 181 TEARARQALANVSALLRPGGIFIGTMPDANVIIKKLREAEGLTFGNRVYWVRFDEEFSDK 240
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KFKSS PFGI+Y FHLEDAVDCPEWIVPFH+FKSLAEE D ELVF KNSHEFVHEY+KKP
Sbjct: 241 KFKSSSPFGIKYTFHLEDAVDCPEWIVPFHVFKSLAEENDFELVFAKNSHEFVHEYMKKP 300
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E++ELMRRLGALGDGNQDQSTLSADEWE AYLY++FVLRKRGQPD T+ SG+R++G M+I
Sbjct: 301 EFVELMRRLGALGDGNQDQSTLSADEWEAAYLYMSFVLRKRGQPDKTQQSGRRNRGSMHI 360
Query: 361 SKEDIMYVHSD 371
S+EDIMY+ +D
Sbjct: 361 SEEDIMYISTD 371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574992|ref|XP_002528402.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis] gi|223532190|gb|EEF33995.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/371 (84%), Positives = 342/371 (92%), Gaps = 6/371 (1%)
Query: 1 MKRGHRGSPSSS-EGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEERE 59
MKRG+ SPS+S +GPP R + P+G++HF ED F +KVADHYS RTNQTLEERE
Sbjct: 1 MKRGYSESPSTSGDGPPKSRIRYTPQGEAHFSED-----FVQKVADHYSARTNQTLEERE 55
Query: 60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS 119
ASPIIHLKKLNNWIKSVLVQLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS
Sbjct: 56 ASPIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS 115
Query: 120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW 179
IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV LDKVLADDAPFDICSCQFA+HYSW
Sbjct: 116 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVRLDKVLADDAPFDICSCQFALHYSW 175
Query: 180 STEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFAD 239
STEARARRALANVSALLRPGGTFIGTMPDANVI+KKLRE +G GNSVYWIR DEE+++
Sbjct: 176 STEARARRALANVSALLRPGGTFIGTMPDANVIVKKLREAKGPVFGNSVYWIRFDEEYSE 235
Query: 240 KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKK 299
KKFK S P+GI+YKFHLEDAVDCPEWIVPF+IFKSLAEEYDLELVFVKN+HEFVHEY+KK
Sbjct: 236 KKFKYSAPYGIKYKFHLEDAVDCPEWIVPFNIFKSLAEEYDLELVFVKNAHEFVHEYMKK 295
Query: 300 PEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMY 359
PE+I+LMRRLGALGDGNQDQSTLS DEWEVAYLYLAFVL+KRGQPD T+ + KRDKGKM+
Sbjct: 296 PEFIDLMRRLGALGDGNQDQSTLSPDEWEVAYLYLAFVLKKRGQPDRTQTNSKRDKGKMH 355
Query: 360 ISKEDIMYVHS 370
ISKEDIMY+++
Sbjct: 356 ISKEDIMYINN 366
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468524|ref|XP_004151971.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Cucumis sativus] gi|449496924|ref|XP_004160264.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/371 (84%), Positives = 338/371 (91%), Gaps = 1/371 (0%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG+ SPS+S GPP R K NPEGD+ F EDESTK+FARKVA+HYS RTNQTLEEREA
Sbjct: 1 MKRGYSESPSASLGPPQSRPKYNPEGDAEF-EDESTKIFARKVAEHYSARTNQTLEEREA 59
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
S IIHLKKLNNWIKSVLVQLYARRGD VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 60 SVIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 119
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
EDCRTRYNGDADHHQRRKKFSFPARLICGDCYE LD VLADDAPFDICSCQFA+HYSWS
Sbjct: 120 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEARLDHVLADDAPFDICSCQFALHYSWS 179
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARARRALAN+SALLRPGG IGTMPDANVI+KKLRE +GL GNSVYWIR DEE+A+K
Sbjct: 180 TEARARRALANISALLRPGGVLIGTMPDANVIVKKLREAQGLMFGNSVYWIRFDEEYAEK 239
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KF +S PFGI+Y FHLEDAVDCPEWIVPFH+FKSLAEEYDLELVFVKNSHEFVHEYLKKP
Sbjct: 240 KFNASSPFGIKYLFHLEDAVDCPEWIVPFHVFKSLAEEYDLELVFVKNSHEFVHEYLKKP 299
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E+++LMRRLGALGDGNQDQSTLS DEWEVAYLYL+FVLRKRGQPD T+ +R +G+M I
Sbjct: 300 EFVDLMRRLGALGDGNQDQSTLSPDEWEVAYLYLSFVLRKRGQPDRTQAPNRRYRGQMQI 359
Query: 361 SKEDIMYVHSD 371
KE+IMY+ +D
Sbjct: 360 GKENIMYISTD 370
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835020|ref|XP_002885392.1| mRNA capping enzyme family protein [Arabidopsis lyrata subsp. lyrata] gi|297331232|gb|EFH61651.1| mRNA capping enzyme family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/370 (84%), Positives = 340/370 (91%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG SPSSS PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1 MKRGFSESPSSSGPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYAR D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR EE++ K
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYSQK 240
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KFKSS PFGI+Y FHLEDAVDCPEWIVPF++FKSLAEEYDLELVFVKNSHEFVHEY+KKP
Sbjct: 241 KFKSSSPFGIEYVFHLEDAVDCPEWIVPFNVFKSLAEEYDLELVFVKNSHEFVHEYMKKP 300
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E++ELMRRLGALGDGN DQSTLSADEWE AYLYL+FVLRKRG+PDG R SG+R GKM +
Sbjct: 301 EFVELMRRLGALGDGNNDQSTLSADEWEAAYLYLSFVLRKRGEPDGARRSGRRKNGKMNL 360
Query: 361 SKEDIMYVHS 370
SK+D++Y+ S
Sbjct: 361 SKDDVLYIDS 370
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42565060|ref|NP_188701.2| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana] gi|75273308|sp|Q9LHQ7.1|MCES1_ARATH RecName: Full=mRNA cap guanine-N7 methyltransferase 1; AltName: Full=mRNA (guanine-N(7)-)-methyltransferase 1; AltName: Full=mRNA cap methyltransferase 1 gi|9294344|dbj|BAB02241.1| mRNA cap methyltransferase-like protein [Arabidopsis thaliana] gi|28973781|gb|AAO64206.1| unknown protein [Arabidopsis thaliana] gi|29824183|gb|AAP04052.1| unknown protein [Arabidopsis thaliana] gi|110736712|dbj|BAF00319.1| hypothetical protein [Arabidopsis thaliana] gi|332642886|gb|AEE76407.1| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/370 (84%), Positives = 339/370 (91%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG SPSSS PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1 MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYAR D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR EE++ K
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYSQK 240
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KFKSS PFGI+Y FHLEDAVDCPEWIVPF++FKSLAEEYDLELVFVKNSHEFVHEY+KKP
Sbjct: 241 KFKSSSPFGIEYVFHLEDAVDCPEWIVPFNVFKSLAEEYDLELVFVKNSHEFVHEYMKKP 300
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E++ELMRRLGALGDG+ DQSTLSADEWE AYLYL+FVLRKRG+ DG R SG+R GKM +
Sbjct: 301 EFVELMRRLGALGDGSNDQSTLSADEWEAAYLYLSFVLRKRGESDGARRSGRRKNGKMNL 360
Query: 361 SKEDIMYVHS 370
SK+D++Y+ S
Sbjct: 361 SKDDVLYIDS 370
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511455|ref|XP_003626016.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula] gi|355501031|gb|AES82234.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/371 (81%), Positives = 337/371 (90%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG+R SPSSS G P + + N +GD +FLEDESTK +ARKVADHYS R+NQTLEEREA
Sbjct: 1 MKRGYRESPSSSFGQPHSKPRHNSQGDENFLEDESTKNYARKVADHYSARSNQTLEEREA 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYA RGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYACRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
+DCRTRYNGDADHHQRRKKF+FPARL+CGDCYEV LDKVLA+DAPFDICSCQFA+HYSWS
Sbjct: 121 KDCRTRYNGDADHHQRRKKFTFPARLLCGDCYEVRLDKVLAEDAPFDICSCQFALHYSWS 180
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARAR+ALANVSALLRPGG FIGTMPDANVI KKLRE EGL GNSVY + DEEF+DK
Sbjct: 181 TEARARQALANVSALLRPGGVFIGTMPDANVITKKLREAEGLTFGNSVYSVWFDEEFSDK 240
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KFKSS PFGI+Y FHLEDAVDCPEWIVPFH+FKSLAEEYD ELVF KNSHEFVHEY+K+
Sbjct: 241 KFKSSHPFGIKYTFHLEDAVDCPEWIVPFHVFKSLAEEYDFELVFAKNSHEFVHEYMKRT 300
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E+++LM+RLGALGDGNQDQ TLSADEWE AYLY++FVLRKRGQPD RVSG++D+G M+I
Sbjct: 301 EFVDLMQRLGALGDGNQDQGTLSADEWEAAYLYMSFVLRKRGQPDKNRVSGRKDRGLMHI 360
Query: 361 SKEDIMYVHSD 371
++EDI Y+ +D
Sbjct: 361 TEEDITYIGND 371
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42572501|ref|NP_974346.1| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana] gi|332642887|gb|AEE76408.1| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/370 (84%), Positives = 339/370 (91%), Gaps = 1/370 (0%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG SPSSS PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1 MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYAR D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR EE++ +
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYS-Q 239
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KFKSS PFGI+Y FHLEDAVDCPEWIVPF++FKSLAEEYDLELVFVKNSHEFVHEY+KKP
Sbjct: 240 KFKSSSPFGIEYVFHLEDAVDCPEWIVPFNVFKSLAEEYDLELVFVKNSHEFVHEYMKKP 299
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E++ELMRRLGALGDG+ DQSTLSADEWE AYLYL+FVLRKRG+ DG R SG+R GKM +
Sbjct: 300 EFVELMRRLGALGDGSNDQSTLSADEWEAAYLYLSFVLRKRGESDGARRSGRRKNGKMNL 359
Query: 361 SKEDIMYVHS 370
SK+D++Y+ S
Sbjct: 360 SKDDVLYIDS 369
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117368|ref|XP_002317555.1| predicted protein [Populus trichocarpa] gi|222860620|gb|EEE98167.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust.
Identities = 297/374 (79%), Positives = 327/374 (87%), Gaps = 7/374 (1%)
Query: 1 MKRGHRGSPS--SSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEER 58
MKRG+ SPS S+ GPP R K PEG++ F D F ++VADHYS RTNQTLEER
Sbjct: 1 MKRGYPTSPSNSSASGPPKSRLKYTPEGEADFSND-----FVQRVADHYSARTNQTLEER 55
Query: 59 EASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118
EASPIIHLKKLNNWIKSVLVQ Y +GD VLDLACGKGGDLIKWDKAK GYYVGIDIAEG
Sbjct: 56 EASPIIHLKKLNNWIKSVLVQQYTGKGDAVLDLACGKGGDLIKWDKAKAGYYVGIDIAEG 115
Query: 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS 178
S+EDCRTRYNGDADHHQRRKKF+FPARLICGDC+E+ LD+VL DDAPFDI SCQFA+HYS
Sbjct: 116 SMEDCRTRYNGDADHHQRRKKFTFPARLICGDCFELQLDEVLVDDAPFDIVSCQFALHYS 175
Query: 179 WSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFA 238
WSTEARARRALAN+SALLRPGGTFIGTMPDANVIIKKLRE EGLA GNSVYW+R DEEF+
Sbjct: 176 WSTEARARRALANISALLRPGGTFIGTMPDANVIIKKLREAEGLAFGNSVYWVRFDEEFS 235
Query: 239 DKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLK 298
KKF+SS PFGI+Y FHLEDAVDCPEWIVPFH+FK+LAEEYD EL+F KN+HEFVHE +K
Sbjct: 236 QKKFRSSSPFGIKYYFHLEDAVDCPEWIVPFHVFKALAEEYDFELIFAKNNHEFVHENMK 295
Query: 299 KPEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKM 358
KPE +ELMRRLGALGDGNQD STLS DEWEVAYLYLAFVL+KRGQPD T V KRDKGKM
Sbjct: 296 KPENVELMRRLGALGDGNQDLSTLSPDEWEVAYLYLAFVLKKRGQPDRTPVKSKRDKGKM 355
Query: 359 YISKEDIMYVHSDT 372
++ KEDI+Y+ S+
Sbjct: 356 HLEKEDILYISSEV 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | ||||||
| TAIR|locus:2083420 | 370 | AT3G20650 "AT3G20650" [Arabido | 0.994 | 1.0 | 0.843 | 6.7e-175 | |
| POMBASE|SPCC330.10 | 360 | pcm1 "P-TEFb-cap methyltransfe | 0.771 | 0.797 | 0.422 | 5.3e-56 | |
| UNIPROTKB|Q4R7K1 | 476 | RNMT "mRNA cap guanine-N7 meth | 0.758 | 0.592 | 0.375 | 1.6e-52 | |
| UNIPROTKB|E1BYM1 | 415 | RNMT "mRNA cap guanine-N7 meth | 0.704 | 0.631 | 0.392 | 9.8e-50 | |
| ZFIN|ZDB-GENE-041008-25 | 400 | rnmt "RNA (guanine-7-) methylt | 0.940 | 0.875 | 0.354 | 1.5e-49 | |
| UNIPROTKB|E2R4R3 | 478 | RNMT "mRNA cap guanine-N7 meth | 0.763 | 0.594 | 0.367 | 1.6e-49 | |
| UNIPROTKB|O43148 | 476 | RNMT "mRNA cap guanine-N7 meth | 0.758 | 0.592 | 0.372 | 8.7e-49 | |
| UNIPROTKB|Q61E36 | 378 | tag-72 "mRNA cap guanine-N7 me | 0.739 | 0.727 | 0.376 | 3.7e-48 | |
| UNIPROTKB|E2RK56 | 457 | E2RK56 "mRNA cap guanine-N7 me | 0.846 | 0.689 | 0.341 | 4.7e-48 | |
| UNIPROTKB|Q28FT4 | 405 | rnmt "mRNA cap guanine-N7 meth | 0.790 | 0.725 | 0.354 | 7.7e-48 |
| TAIR|locus:2083420 AT3G20650 "AT3G20650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1699 (603.1 bits), Expect = 6.7e-175, P = 6.7e-175
Identities = 312/370 (84%), Positives = 339/370 (91%)
Query: 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
MKRG SPSSS PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1 MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
SPIIHLKKLNNWIKSVL+QLYAR D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR EE++ K
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYSQK 240
Query: 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKP 300
KFKSS PFGI+Y FHLEDAVDCPEWIVPF++FKSLAEEYDLELVFVKNSHEFVHEY+KKP
Sbjct: 241 KFKSSSPFGIEYVFHLEDAVDCPEWIVPFNVFKSLAEEYDLELVFVKNSHEFVHEYMKKP 300
Query: 301 EYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKGKMYI 360
E++ELMRRLGALGDG+ DQSTLSADEWE AYLYL+FVLRKRG+ DG R SG+R GKM +
Sbjct: 301 EFVELMRRLGALGDGSNDQSTLSADEWEAAYLYLSFVLRKRGESDGARRSGRRKNGKMNL 360
Query: 361 SKEDIMYVHS 370
SK+D++Y+ S
Sbjct: 361 SKDDVLYIDS 370
|
|
| POMBASE|SPCC330.10 pcm1 "P-TEFb-cap methyltransferase Pcm1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 130/308 (42%), Positives = 183/308 (59%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGD----VVLDLACGKGGD 98
V HY+ R + ++R+ SPII LK+ NNWIKSVL+Q +A +VLD+ CGKGGD
Sbjct: 65 VRSHYNARPDLGYKKRQFSPIIQLKRFNNWIKSVLIQKFAPHASDYPILVLDMGCGKGGD 124
Query: 99 LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158
LIKWDKA I Y+GIDIAE S+ + RY R SF A GDC+ +++
Sbjct: 125 LIKWDKAGIDGYIGIDIAEVSVNQAKKRY--------REMHASFDALFYAGDCFSSSINE 176
Query: 159 VLA-DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
+L D FD+ S QF MHY++ +E + R L NVS L GG IGT+P+++VI+K ++
Sbjct: 177 LLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGNVSKCLPRGGVMIGTIPNSDVIVKHIK 236
Query: 218 EVE-G-LAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV-DCPEWIVPFHIFKS 274
++ G GN +Y +R E + F+ P+GIQY F+LEDAV D PE++VPF F++
Sbjct: 237 MLKPGEKEWGNDIYKVRFPES-PPRSFRP--PYGIQYYFYLEDAVTDVPEYVVPFEAFRA 293
Query: 275 LAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYL 334
+AE Y+LEL++VK + ++E Y LM R+ + N+ + E E A YL
Sbjct: 294 VAEGYNLELIWVKPFLDILNEEKNSETYGPLMDRMKVVD--NEGHRGIGGQEKEAAGFYL 351
Query: 335 AFVLRKRG 342
AF KRG
Sbjct: 352 AFAFEKRG 359
|
|
| UNIPROTKB|Q4R7K1 RNMT "mRNA cap guanine-N7 methyltransferase" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 115/306 (37%), Positives = 169/306 (55%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA------RRGDV-VLDLACGK 95
VA HY+ LE+R S I +L+ NNW+KSVL+ + ++ D+ VLDL CGK
Sbjct: 149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 208
Query: 96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
GGDL+KW K +I V DIA+ SI+ C+ RY D RR ++ F A I DC E
Sbjct: 209 GGDLLKWKKGRINKLVCTDIADVSIKQCQQRYE---DMKNRRDSEYIFSAEFITADCSKE 265
Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
+ ++K FDICSCQF HYS+ + +A L N L PGG FIGT P++ +I
Sbjct: 266 LLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI 325
Query: 214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIF 272
++L E + GN +Y ++ + K P FG +Y F+LE VD PE++V F +
Sbjct: 326 RRLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLEGVVDVPEFLVYFPLL 378
Query: 273 KSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGD--GNQDQSTLS--ADEWE 328
+A++Y+++LV+ K EF E +K E L++R+ AL N+ +S D++E
Sbjct: 379 NEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSERVDDYE 438
Query: 329 VAYLYL 334
A Y+
Sbjct: 439 HAAKYM 444
|
|
| UNIPROTKB|E1BYM1 RNMT "mRNA cap guanine-N7 methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 109/278 (39%), Positives = 157/278 (56%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV-----QLYARRGDV-VLDLACGKG 96
VA HY+ LE+R S I +L+ NNW KSVL+ ++ ++ D+ VLDL CGKG
Sbjct: 88 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWTKSVLIGEFIDRVRQKKSDITVLDLGCGKG 147
Query: 97 GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156
GDL+KW K +I V DIA+ S++ C+ RY D R + F A I D + L
Sbjct: 148 GDLLKWRKGRIKKLVCTDIADISVQQCKQRYE-DMKARCRYNERIFDAEFIQADSTKDLL 206
Query: 157 DKVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215
+D D FDICSCQF HYS+ T +A L N L PGG FIGT P++ ++K+
Sbjct: 207 SSKYSDPDTRFDICSCQFVYHYSFETYEQADMMLKNACGNLSPGGYFIGTTPNSFELVKR 266
Query: 216 LREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIFKS 274
L E + GN VY ++ ++ K P FG +Y FHLE+ VD PE++V F + +
Sbjct: 267 LEASETNSFGNDVYNVKFEK-------KGEYPLFGCKYDFHLEEVVDVPEFLVYFPLLEE 319
Query: 275 LAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGAL 312
+A+++ ++LV+ EF E +K E+ L+RR+ AL
Sbjct: 320 MAKKHGMKLVYKMTFREFYEEKIKNEEHKMLLRRMQAL 357
|
|
| ZFIN|ZDB-GENE-041008-25 rnmt "RNA (guanine-7-) methyltransferase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 132/372 (35%), Positives = 191/372 (51%)
Query: 8 SPSSSEGPPAQRFKQNPEGDSHFLEDE---STKVFARKVADHYSRRTNQTLEEREASPII 64
S SSS +R + E D H + + ++KVA HY++ L ER S I+
Sbjct: 35 STSSSSSSVKRRRDGDEEDDDHSPSKKLVTEDSLHSQKVATHYNKIKECGLAERNKSRIV 94
Query: 65 HLKKLNNWIKSVLV-----QLYARRGDV-VLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118
+++ NNW+KSVL+ ++ +R +V VLDL CGKGGDL+KW K +I V DIA
Sbjct: 95 YMRNFNNWLKSVLIAEILDKVRQKRREVTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAV 154
Query: 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD-DAPFDICSCQFAMHY 177
SIE C+ RYN D +F A I DC L + L D + FD+CSCQF HY
Sbjct: 155 SIEQCQQRYN-DVRRRGHPNDRTFSAEFITADCSRELLSEKLQDPELQFDVCSCQFVYHY 213
Query: 178 SWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEF 237
S+ +E++A L N LRPGG FIGT PDA ++K+L E + + GN V+ + +
Sbjct: 214 SFESESQADTMLRNACERLRPGGFFIGTTPDAYELVKRLEESDSNSFGNEVFSVTFQK-- 271
Query: 238 ADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEY 296
K P FG QY F LE V+ PE++V F +F +A++Y++ LV+ K EF E
Sbjct: 272 -----KGEYPLFGCQYDFSLEGVVNVPEFLVYFPLFVEMAKKYNMRLVYKKTFKEFFEEK 326
Query: 297 LKKPEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRGQPDGTRVSGKRDKG 356
+K + +LM+ + AL D+ + Y + RK P R G K
Sbjct: 327 VKDGKNKDLMQWMQALEQYPPDERGQLSSSGPGEYDHAK---RKAADPAVRRPLGTLSKS 383
Query: 357 KMYISKEDIMYV 368
+ + ++YV
Sbjct: 384 EWEATSIYLVYV 395
|
|
| UNIPROTKB|E2R4R3 RNMT "mRNA cap guanine-N7 methyltransferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 112/305 (36%), Positives = 169/305 (55%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA------RRGDV-VLDLACGK 95
VA HY+ LE+R S I +L+ NNW+KSVL+ + ++ D+ VLDL CGK
Sbjct: 150 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 209
Query: 96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EV 154
GGDL+KW K +I V DIA+ S++ C+ RY D + R ++ F A + DC E+
Sbjct: 210 GGDLLKWKKGRINKLVCTDIADVSVKQCQQRYE-DMKNRCRDNEYIFNAEFVTADCSKEL 268
Query: 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214
+K + FDICSCQF HYS+ + +A L N L PGG FIGT P++ +I+
Sbjct: 269 LFNKFRDPETCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIR 328
Query: 215 KLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIFK 273
+L E + GN +Y ++ + K P FG +Y F+LE VD PE++V F +
Sbjct: 329 RLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLN 381
Query: 274 SLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGD--GNQDQSTLS--ADEWEV 329
+A++Y+++LV+ K EF E +K E L++R+ AL N++ S D++E
Sbjct: 382 EMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANENSKLASEKVDDYEH 441
Query: 330 AYLYL 334
A Y+
Sbjct: 442 AAEYM 446
|
|
| UNIPROTKB|O43148 RNMT "mRNA cap guanine-N7 methyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 470 (170.5 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 114/306 (37%), Positives = 168/306 (54%)
Query: 43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA------RRGDV-VLDLACGK 95
VA HY+ LE+R S I +L+ NNW+KSVL+ + ++ D+ VLDL CGK
Sbjct: 149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 208
Query: 96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
GGDL+KW K +I V DIA+ S++ C+ RY D RR ++ F A I D E
Sbjct: 209 GGDLLKWKKGRINKLVCTDIADVSVKQCQQRYE---DMKNRRDSEYIFSAEFITADSSKE 265
Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
+ +DK FDICSCQF HYS+ + +A L N L PGG FIGT P++ +I
Sbjct: 266 LLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI 325
Query: 214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIF 272
++L E + GN +Y ++ + K P FG +Y F+LE VD PE++V F +
Sbjct: 326 RRLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLEGVVDVPEFLVYFPLL 378
Query: 273 KSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGD--GNQDQSTLS--ADEWE 328
+A++Y+++LV+ K EF E +K E L++R+ AL N+ +S D++E
Sbjct: 379 NEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYE 438
Query: 329 VAYLYL 334
A Y+
Sbjct: 439 HAAKYM 444
|
|
| UNIPROTKB|Q61E36 tag-72 "mRNA cap guanine-N7 methyltransferase" [Caenorhabditis briggsae (taxid:6238)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 110/292 (37%), Positives = 159/292 (54%)
Query: 40 ARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV----QLYARRG---DVVLDLA 92
A +VADHY+ +++R+ S I ++ +NNWIKS L+ +L G VVLD+A
Sbjct: 3 AAEVADHYNNVRQAGIQDRKESRIFFMRNMNNWIKSQLINDAMKLVNENGVKSPVVLDIA 62
Query: 93 CGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152
CGKGGDL KWD + V D+A+ SI+ RY H+ F A+ I DC
Sbjct: 63 CGKGGDLRKWDITGAKHVVMADVADVSIQQAEERYK---TMHKYPHDI-FGAQFIVADCT 118
Query: 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212
+ +LD + PFD+ SCQFAMHYS+ E AR L N L+ GG FIGT+PDA+ I
Sbjct: 119 KENLDDKIEIKEPFDLVSCQFAMHYSFVDEDSARTFLKNAVGKLKLGGVFIGTLPDADRI 178
Query: 213 IKKLRE-VEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFH 270
+ +R EG N V ++ E D+ + + P FG ++ F L++ V+CPE++ F
Sbjct: 179 VWAVRNGTEG-KFANDV--CKITYEKVDELSEGNVPLFGAKFHFSLDEQVNCPEFLAYFS 235
Query: 271 IFKSLAEEYDLELVFVKNSHEFVHEYLKKPE-YIELMRRLGALGDGNQDQST 321
+ K L EE+D+EL+FV N E + +L +E M+ L + N T
Sbjct: 236 LVKHLLEEHDMELLFVHNFAEAITNWLVPGRRLLESMKGLETFPNRNLSGKT 287
|
|
| UNIPROTKB|E2RK56 E2RK56 "mRNA cap guanine-N7 methyltransferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 118/346 (34%), Positives = 186/346 (53%)
Query: 6 RGSPSSSEGPPAQR-FKQN-PEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPI 63
+ P + +G +R +++ PE + E S+ V A HY+ LE+R S I
Sbjct: 94 KDEPFTGDGTQKKRKIEEDVPEKQKNLEEGHSSAVAA-----HYNELQEVGLEKRSQSRI 148
Query: 64 IHLKKLNNWIKSVLVQLYA--------RRGDV-VLDLACGKGGDLIKWDKAKIGYYVGID 114
+L+ NNW+KSVL++ + ++ D+ VLDL GKGGDL+ W K +I V D
Sbjct: 149 FNLRNFNNWVKSVLIEEFLEKVRQKKKKQRDITVLDLGWGKGGDLLNWKKGRINKVVCTD 208
Query: 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDKVLADDAPFDICSCQF 173
I + S++ C+ RY D +H R ++ F A + DC E+ ++K + FDICSCQF
Sbjct: 209 ITDVSVKQCQQRYE-DMKNHCRDNEYIFSAEFVTADCSKELLINKFRDAETCFDICSCQF 267
Query: 174 AMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRL 233
HYS+ + +A L N L PGG FIGT P++ +I++L E + GN +Y ++
Sbjct: 268 VCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKF 327
Query: 234 DEEFADKKFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEF 292
+ K P F +Y F+LE VD PE++V F + +A++Y+++LV+ K EF
Sbjct: 328 QK-------KGDYPLFSCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEF 380
Query: 293 VHEYLKKPEYIELMRRLGALGD--GNQDQSTLS--ADEWEVAYLYL 334
E +K E L++R+ AL N++ S LS D++E A Y+
Sbjct: 381 YEEKIKHNENKMLLKRMQALEPYPANEN-SKLSEKVDDYEHAAEYM 425
|
|
| UNIPROTKB|Q28FT4 rnmt "mRNA cap guanine-N7 methyltransferase" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 111/313 (35%), Positives = 158/313 (50%)
Query: 8 SPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLK 67
SP ++ P +R PE S + V HY+ LE R S I HL+
Sbjct: 46 SPPKNKKSPLKRKAGEPESPSK--RPRLEEGHGSLVVTHYNELPETGLETRSQSRIFHLR 103
Query: 68 KLNNWIKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIE 121
NNW+KS L+ + R VLDL CGKGGDL+KW K I V DIA+ S++
Sbjct: 104 NFNNWMKSALIGEFVEKVRQRTRNIAVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVK 163
Query: 122 DCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD-DAPFDICSCQFAMHYSWS 180
C RY D R ++ F A + D + L + D + FDICSCQF HYS+
Sbjct: 164 QCEERYK-DLKRKSRNERV-FEAEFLTADSTKELLSEKYNDPEIKFDICSCQFVYHYSFE 221
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
T +A L N L PGG FIGT PD ++K+L + + GN VY ++ ++
Sbjct: 222 TYEQADMMLRNACERLCPGGFFIGTTPDGFELVKRLEASDTNSFGNDVYTVKFEK----- 276
Query: 241 KFKSSRP-FGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKK 299
K P FG +Y F LE+ V+ PE++V F + +A++Y ++L++ K EF E +K
Sbjct: 277 --KGKYPLFGCKYDFSLEEVVNVPEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEEKVKN 334
Query: 300 PEYIELMRRLGAL 312
E L++R+ AL
Sbjct: 335 DEQKMLLKRMKAL 347
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LHQ7 | MCES1_ARATH | 2, ., 1, ., 1, ., 5, 6 | 0.8432 | 0.9946 | 1.0 | yes | no |
| Q6Z9U7 | MCES1_ORYSJ | 2, ., 1, ., 1, ., 5, 6 | 0.7282 | 0.9865 | 0.9945 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.998 |
| 4th Layer | 2.1.1.56 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 372 | |||
| pfam03291 | 327 | pfam03291, Pox_MCEL, mRNA capping enzyme | 1e-131 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-10 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-10 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 3e-09 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 3e-09 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 3e-09 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 6e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-05 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-04 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 4e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 6e-04 |
| >gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme | Back alignment and domain information |
|---|
Score = 379 bits (976), Expect = e-131
Identities = 135/333 (40%), Positives = 175/333 (52%), Gaps = 27/333 (8%)
Query: 30 FLEDESTKVFARKVADHYSRRTNQT--LEEREASPIIHLKKLNNWIKSVLVQLYAR---- 83
E+ VA HY+ L++R+ S I L+ NNWIKS+L+ LYA
Sbjct: 1 EGPFETESNIVDIVAAHYNELPESGIDLKKRQDSTIDQLRNFNNWIKSLLISLYASKTFQ 60
Query: 84 --RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD-ADHHQRRKKF 140
VLDL CGKGGDL K+ K I +G DIAE SIE + RYN + + KF
Sbjct: 61 DKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKF 120
Query: 141 SFPARLICGDCYEVHLDKVLADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199
F A I GDC+ + +V FDI S QFA+HYS+ +E +AR L N++ LL G
Sbjct: 121 DFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASG 180
Query: 200 GTFIGTMPDANVIIKKLR--EVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLE 257
G FIGT PD + IIKKL VE + GNS+Y++ +++ PFGI+Y ++LE
Sbjct: 181 GKFIGTTPDGDFIIKKLTATFVEHKSFGNSIYYVSFEKD------PPRPPFGIKYVYNLE 234
Query: 258 DAV-DCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGN 316
D V D PE++VPF LAEEY LELV K H+ +E +KK L+ R+ L
Sbjct: 235 DMVTDVPEYLVPFETLVELAEEYGLELVDKKTFHDIYNEEIKKYRSKMLINRMSGLESRP 294
Query: 317 QDQS--------TLSADEWEVAYLYLAFVLRKR 341
TL DEWE LYL FV KR
Sbjct: 295 ATYFELNRLALGTLEGDEWEALLLYLVFVFEKR 327
|
This family of enzymes are related to pfam03919. Length = 327 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-10
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 24/115 (20%)
Query: 89 LDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC 148
LD+ CG G + G+D++ + R R + +
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP---------------RKFVV 45
Query: 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
GD ++ D FD+ +H+ RAL ++ +L+PGG +
Sbjct: 46 GDAEDLPF-----PDESFDVVVSSLVLHHL----PDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-10
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 16/116 (13%)
Query: 88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
VLDL CG G + G+DI+ ++E R + ++
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKA---------AAALLADNVEVL 52
Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
GD E+ + D FD+ +H+ R L LL+PGG +
Sbjct: 53 KGDAEELPPEA----DESFDVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLV 101
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 22/121 (18%)
Query: 84 RGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
G VLD+ CG G I+ + G G+D++ +E R
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-------- 52
Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
+ GD L FD L +++LL+PGG
Sbjct: 53 -ITFVQGD-----APDALDLLEGFDAVFIGGGGG-------DLLELLDALASLLKPGGRL 99
Query: 203 I 203
+
Sbjct: 100 V 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-09
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 89 LDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
LD+ CG G L +A G Y G+DI+ ++E R R +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLD------ 54
Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
LD + D FD+ +H+ A R L N+ LL+PGG
Sbjct: 55 -------VLDAIDLDPGSFDVVVASNVLHHL----ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-09
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
+LDL CG G L +A G+DI++ ++E + R + R +
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERL----------RDKGPKVRFV 50
Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFA-MHYSWSTEARARRALANVSALLRPGG 200
D ++ ++ FD+ C + Y + RA L + LLRPGG
Sbjct: 51 VADARDLP-----FEEGSFDLVICAGLSLDYLSPKQLRA--LLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-07
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 23/132 (17%)
Query: 80 LYARRGDVVLDLACGKGGDL--IKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR 137
L + GD VLD+ CG G D + G VGID +E + + R G
Sbjct: 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGP----- 69
Query: 138 KKFSFPARLICGDCYEVHLDKVLADDAPFDIC-SCQFAMHYSWSTEARARRALANVSALL 196
+ GD + D FD S + H RALA ++ +L
Sbjct: 70 -----NVEFVRGDADGLPF-----PDGSFDAVRSDRVLQHL-----EDPARALAEIARVL 114
Query: 197 RPGGTFIGTMPD 208
RPGG + D
Sbjct: 115 RPGGRVVVLDTD 126
|
Length = 241 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 83 RRGDVVLDLACGKGGDLIKWDKAKIGY----YVGIDIAEGSIEDCRTRYNGDADHHQRRK 138
+ G VLDL CG G A+ VGIDI+E +IE + +K
Sbjct: 2 KSGIKVLDLGCGTGYLTFIL--AEKLGPGAEVVGIDISEEAIEKAKEN---------AKK 50
Query: 139 KFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP 198
I GD E L ++ +D FD+ +++ + L + +L+P
Sbjct: 51 LGYENVEFIQGDIEE--LPQLQLEDNSFDVVISNEVLNHLPDPDK----VLEEIIRVLKP 104
Query: 199 GGTFI 203
GG I
Sbjct: 105 GGVLI 109
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 27/124 (21%), Positives = 38/124 (30%), Gaps = 17/124 (13%)
Query: 85 GDVVLDLACGKGGDLIK-WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
GD VLD G G L+ VG+++ + R R
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAP--------R 52
Query: 144 ARLICGDCYEVHLDKVLADDAPFD-ICSCQF---AMHYSWSTEARARRALANVSALLRPG 199
R++ GD E+ D FD + R LA LL+PG
Sbjct: 53 VRVVVGDARELLE----LPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPG 108
Query: 200 GTFI 203
G +
Sbjct: 109 GVLV 112
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 33/140 (23%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNGD 130
W ++++ L + GD VLD+ACG G + G VG+DI+E +E
Sbjct: 39 WRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLE--------- 89
Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLAD-------DAPFDICSCQFAMHYSWSTEA 183
AR +++ V+ D D FD + F +
Sbjct: 90 ------------VAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNV----T 133
Query: 184 RARRALANVSALLRPGGTFI 203
+AL + +L+PGG +
Sbjct: 134 DIDKALKEMYRVLKPGGRLL 153
|
Length = 238 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKG 96
++F +A Y N L S +H W + + L R GD VLDLACG
Sbjct: 15 EMFDS-IAPKYDL-MNDLL-----SFGLHRV----WRRKTIKWLGVRPGDKVLDLACGT- 62
Query: 97 GDL-IKWDKA--KIGYYVGIDIAEG 118
GDL I KA K G VG+D +EG
Sbjct: 63 GDLAIALAKAVGKTGEVVGLDFSEG 87
|
Length = 239 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (93), Expect = 6e-04
Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 17/220 (7%)
Query: 81 YARRGDVVLDLACGKGGD-LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139
G VLD+ CG G L+ + Y VG+D++ + R R G
Sbjct: 45 LLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL----- 99
Query: 140 FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199
+ D L D A FD+ +H +AL + +L+PG
Sbjct: 100 ----VDFVVADALGGVLP--FEDSASFDLVISLLVLHL-----LPPAKALRELLRVLKPG 148
Query: 200 GTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDA 259
G + + + +++ + + E E
Sbjct: 149 GRLVLSDLLRDGLLEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELE 208
Query: 260 VDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKK 299
++ + L E L L + + ++
Sbjct: 209 LERGGLARLLEELRLLLELLALGLEARGFRLLLLLKGARE 248
|
Length = 257 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 100.0 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.92 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.9 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.87 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.85 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.84 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.84 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.83 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.82 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.81 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.81 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.76 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.76 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.76 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.75 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.75 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.74 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.73 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.72 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.72 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.72 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.72 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.72 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.71 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.71 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.7 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.7 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.7 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.7 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.68 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.67 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.66 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.65 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.65 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.63 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.63 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.62 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.62 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.62 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.6 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.6 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.6 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.6 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.58 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.58 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.56 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.56 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.56 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.55 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.55 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.55 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.55 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.54 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.54 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.54 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.54 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.54 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.53 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.53 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.53 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.53 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.52 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.52 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.52 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.52 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.51 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.5 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.49 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.49 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.48 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.48 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.48 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.47 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.46 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.46 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.45 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.45 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.42 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.42 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.42 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.42 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.41 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.4 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.4 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.4 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.4 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.39 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.39 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.38 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.38 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.37 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.37 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.37 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.35 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.35 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.34 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.34 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.34 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.31 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.3 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.3 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.3 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.28 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.28 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.28 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.28 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.27 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.26 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.24 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.23 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.21 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.21 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.2 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.2 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.2 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.19 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.19 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.16 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.16 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.14 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.11 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.11 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.11 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.1 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.09 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.09 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.07 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.07 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.07 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.07 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.07 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.06 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.05 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.04 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.04 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.03 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.03 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.03 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.0 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.0 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.0 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.99 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.98 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.97 | |
| PLN02366 | 308 | spermidine synthase | 98.97 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.95 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.95 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.94 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.93 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.93 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.93 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.91 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.87 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.85 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.84 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.84 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.82 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.8 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.8 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.79 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.79 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.79 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.78 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.78 | |
| PLN02476 | 278 | O-methyltransferase | 98.78 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.77 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.77 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.74 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.74 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.74 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.73 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.73 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.72 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.71 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.71 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.71 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.69 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.69 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.68 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.68 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.66 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.64 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.62 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.6 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.57 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.55 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.51 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.49 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.49 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.48 | |
| PLN02823 | 336 | spermine synthase | 98.47 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.46 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.46 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.45 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.45 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.45 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.38 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.38 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.38 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.37 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.36 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.33 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.3 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.29 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.28 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.26 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.25 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.25 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.23 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.21 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.18 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.18 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.18 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.16 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.15 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.14 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.14 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.13 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.09 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.08 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.08 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.98 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.97 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.96 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.96 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.95 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.92 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.86 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.86 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.83 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.82 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.81 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.66 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.63 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.62 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.62 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.61 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.58 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.58 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.58 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.57 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.52 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.51 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.51 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.45 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.44 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.42 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.38 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.31 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.28 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.22 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.21 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.12 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.05 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.99 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.98 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.96 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.93 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.91 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.91 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.89 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.66 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.58 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.57 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.53 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.45 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.34 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.32 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.32 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.22 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.22 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.19 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.15 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.09 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 95.97 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.92 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.84 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.84 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.78 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.77 | |
| PHA01634 | 156 | hypothetical protein | 95.74 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.62 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.53 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.5 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.27 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.67 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.65 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.58 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.57 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 94.45 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 94.21 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 93.98 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.93 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.92 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.89 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 93.82 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.81 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.6 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.4 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 93.14 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 92.64 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 92.2 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.92 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 91.79 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 91.57 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 91.38 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 91.3 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 91.29 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 91.25 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.22 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.99 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 90.88 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 90.17 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.07 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.04 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 89.79 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 89.65 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 88.9 | |
| PRK13699 | 227 | putative methylase; Provisional | 88.69 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 87.95 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 87.86 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 87.49 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 87.43 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 87.41 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 87.28 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 87.18 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 86.98 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 86.95 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 86.93 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.69 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 86.62 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 86.3 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 86.27 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 85.8 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 85.51 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 85.24 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 85.04 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 85.0 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 84.92 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 83.86 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 83.3 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 82.61 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 82.27 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 81.05 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 80.91 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 80.78 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 80.7 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 80.54 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 80.5 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 80.49 |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-58 Score=405.51 Aligned_cols=333 Identities=51% Similarity=0.831 Sum_probs=290.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHH
Q 017369 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQL 80 (372)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~ 80 (372)
|+|..-+.|..|..+ .+.+... ++.++.+.+.+.+.-+.||+|||.+...+...|..|+|+.+|++|||+|++||+.
T Consensus 37 ~~re~~D~p~~~~~~-~~~~~~~--~d~~e~e~~~~~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~ 113 (389)
T KOG1975|consen 37 MKRERYDQPRRSSSP-AQGFRNE--GDRPEIEMEANESKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINL 113 (389)
T ss_pred cchhhhcCccccCcc-ccccccc--ccchhhHhhhccchhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHH
Confidence 445555555543333 4444433 6777777777888899999999999999999999999999999999999999999
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
+.+++..++|+|||.|+++++|..++.+.++|+||++..|++|++|+..+. ++..+..+.+.|+++|+....+.+.+
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~---~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMK---NRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHH---hhhhcccceeEEEEeccchhHHHHhc
Confidence 999999999999999999999999999999999999999999999998543 22345667899999999876655444
Q ss_pred CCCC-CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhh
Q 017369 161 ADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFAD 239 (372)
Q Consensus 161 ~~~~-~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~ 239 (372)
..+. +||+|.|+|++||.|++.+.++.+|+++++.|+|||+||+|+|+.+.|+.+++......|||.+|+|+|. ....
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~-~~~~ 269 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYE-IEFQ 269 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeee-eecc
Confidence 3333 4999999999999999999999999999999999999999999999999999999888999999999998 4445
Q ss_pred cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHHHHhccCCCCCCCC
Q 017369 240 KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQ 319 (372)
Q Consensus 240 ~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 319 (372)
+.+. .++||.+|+|+|+++|+||||+++++.++.|++++|+++|.+++|.+|+.+++..+.+..|+++|+.++... +.
T Consensus 270 k~~~-~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~-~~ 347 (389)
T KOG1975|consen 270 KEFD-VPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFADFYEEELKKNEERELLKRMEGLECYP-NE 347 (389)
T ss_pred cccC-CCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHHHHHHhccccchhhHHHHHhcccCCC-cc
Confidence 5555 578999999999999999999999999999999999999999999999999999999999999999887544 33
Q ss_pred CCCCHhHHHHHHhhcEEEEEecC
Q 017369 320 STLSADEWEVAYLYLAFVLRKRG 342 (372)
Q Consensus 320 ~~ls~~e~e~~~ly~~~vf~K~~ 342 (372)
...+.+|||++++|..|++.|.+
T Consensus 348 ~~~~~de~e~a~~~l~~~~~~~~ 370 (389)
T KOG1975|consen 348 EGESGDEYEAASFYLTFFPEKDR 370 (389)
T ss_pred ccccchHHHHHHHHHhhhhhccc
Confidence 46899999999999998888865
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=392.26 Aligned_cols=299 Identities=51% Similarity=0.865 Sum_probs=225.2
Q ss_pred hHHHHHHHHhhccccccc--hhhhhcCccccchhhhHHHHHHHHHHhCC------CCCEEEEecCCccccHHHHHHcCCC
Q 017369 37 KVFARKVADHYSRRTNQT--LEEREASPIIHLKKLNNWIKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKAKIG 108 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~--~~~r~~s~~~~~~~~~~~~k~~l~~~~~~------~~~~VLDlGcG~G~~~~~l~~~~~~ 108 (372)
....+.+++||++++... ...|..|+|.++|.++||+|++|+..+.. ++.+|||||||.|+++.+|...+..
T Consensus 7 ~~~~~~v~~hYn~~~~~~~~~~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~ 86 (331)
T PF03291_consen 7 SDVTDVVAEHYNQRPEVGIDLKERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIK 86 (331)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-S
T ss_pred ccHHHHHHHHHhccccccchhhhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCC
Confidence 345667999999988776 78899999999999999999999999988 8999999999999999999999999
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCccc-ccccCCCcCeEEEECcCcccccccccCCC-CCeeEEEecccccccCCCHHHHH
Q 017369 109 YYVGIDIAEGSIEDCRTRYNGDADHH-QRRKKFSFPARLICGDCYEVHLDKVLADD-APFDICSCQFAMHYSWSTEARAR 186 (372)
Q Consensus 109 ~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~ 186 (372)
.++|+|||...|++|++|+....... .+.....+...|+.+|+....+.+.+.+. ..||+|.|++++||+|++++.++
T Consensus 87 ~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar 166 (331)
T PF03291_consen 87 HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKAR 166 (331)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHH
Confidence 99999999999999999993211110 01122346788999999876655544333 59999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEeCChHHHHHHHhh----hcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccc-c
Q 017369 187 RALANVSALLRPGGTFIGTMPDANVIIKKLRE----VEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV-D 261 (372)
Q Consensus 187 ~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~----~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~-~ 261 (372)
.+|++++..|+|||+||+|+|+++.++..+++ ..+..+||.+|.|+|+.+ ...++||.+|.|+|.+.+ +
T Consensus 167 ~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~------~~~~~fG~~Y~F~L~~~v~~ 240 (331)
T PF03291_consen 167 QFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD------DFFPPFGAKYDFYLEDAVDD 240 (331)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC------SS--CTTEEEEEEETTCSSC
T ss_pred HHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc------CCCCCCCcEEEEEecCcCCC
Confidence 99999999999999999999999999888887 567789999999999987 224579999999999999 8
Q ss_pred CceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHHHHhccCCCCCCC----------CCCCCHhHHHHHH
Q 017369 262 CPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQD----------QSTLSADEWEVAY 331 (372)
Q Consensus 262 ~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~ls~~e~e~~~ 331 (372)
+||||++++.|++||+++||++|+..+|++|+.++...+....++++|..+...... .+.||.+|||+++
T Consensus 241 ~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~e~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~ewea~~ 320 (331)
T PF03291_consen 241 CPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYEEEKNKYEKRSLLERMKALEKRPGSYNDNEQKRISLGTLSKDEWEAAS 320 (331)
T ss_dssp EEEE---HHHHHHHHHHTTEEEEEEEEHHHHHHHHCCCCHCHHHHHCHGGG--SHHHHHHHHHHHHHCCSS-CCCHHHHC
T ss_pred CceEEeeHHHHHHHHHHcCCEEEEeCChHHHHHHhccCchhhHHHHHHHhhcCCCCcccchhhccccccCCCHHHHHHHH
Confidence 999999999999999999999999999999999888877778888888887543221 2469999999999
Q ss_pred -hhcEEEEEec
Q 017369 332 -LYLAFVLRKR 341 (372)
Q Consensus 332 -ly~~~vf~K~ 341 (372)
||.+|||+|+
T Consensus 321 ~lY~~F~F~K~ 331 (331)
T PF03291_consen 321 SLYLVFAFKKK 331 (331)
T ss_dssp TTEEEEEEEE-
T ss_pred hheEEEEEEeC
Confidence 9999999995
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=188.90 Aligned_cols=144 Identities=26% Similarity=0.477 Sum_probs=124.8
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVG 112 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~g 112 (372)
+...+.|+++|..||. .+. +.+++....|.+.++......+|.+|||+|||||.++..+++. +.++|+|
T Consensus 11 ~~v~~vF~~ia~~YD~-~n~---------~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~ 80 (238)
T COG2226 11 EKVQKVFDKVAKKYDL-MND---------LMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVG 80 (238)
T ss_pred HHHHHHHHhhHHHHHh-hcc---------cccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEE
Confidence 4456799999999984 332 3568888999999998888889999999999999999999874 4568999
Q ss_pred EeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHH
Q 017369 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (372)
Q Consensus 113 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i 192 (372)
+|+|+.|++.|+++..+. +.. +++|+++|++++|+ ++++||+|.+.++|+++ .+..++|+++
T Consensus 81 ~D~s~~ML~~a~~k~~~~--------~~~-~i~fv~~dAe~LPf-----~D~sFD~vt~~fglrnv----~d~~~aL~E~ 142 (238)
T COG2226 81 LDISESMLEVAREKLKKK--------GVQ-NVEFVVGDAENLPF-----PDNSFDAVTISFGLRNV----TDIDKALKEM 142 (238)
T ss_pred EECCHHHHHHHHHHhhcc--------Ccc-ceEEEEechhhCCC-----CCCccCEEEeeehhhcC----CCHHHHHHHH
Confidence 999999999999998742 223 39999999999999 89999999999999998 6899999999
Q ss_pred HHhcCCCcEEEEE
Q 017369 193 SALLRPGGTFIGT 205 (372)
Q Consensus 193 ~~~LkpgG~li~~ 205 (372)
+|+|||||++++.
T Consensus 143 ~RVlKpgG~~~vl 155 (238)
T COG2226 143 YRVLKPGGRLLVL 155 (238)
T ss_pred HHhhcCCeEEEEE
Confidence 9999999987653
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-24 Score=191.01 Aligned_cols=207 Identities=24% Similarity=0.410 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEE
Q 017369 35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVG 112 (372)
Q Consensus 35 ~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~g 112 (372)
...++|++++..||. .+.. .+++....|.+.++......++.+|||+|||||..+..+++. ..+.|+|
T Consensus 8 ~v~~~Fd~ia~~YD~-~n~~---------ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~ 77 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDR-MNDL---------LSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVG 77 (233)
T ss_dssp ---------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEE
T ss_pred HHHHHHHHHHHHhCC-Cccc---------cCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEE
Confidence 345699999999984 4332 346777788888877777888999999999999988888764 3468999
Q ss_pred EeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHH
Q 017369 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (372)
Q Consensus 113 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i 192 (372)
+|+|++|++.|+++.... + ..+++++++|+.++|+ ++++||+|+|.++++++ .+..++++++
T Consensus 78 vD~s~~ML~~a~~k~~~~--------~-~~~i~~v~~da~~lp~-----~d~sfD~v~~~fglrn~----~d~~~~l~E~ 139 (233)
T PF01209_consen 78 VDISPGMLEVARKKLKRE--------G-LQNIEFVQGDAEDLPF-----PDNSFDAVTCSFGLRNF----PDRERALREM 139 (233)
T ss_dssp EES-HHHHHHHHHHHHHT--------T---SEEEEE-BTTB--S------TT-EEEEEEES-GGG-----SSHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHhh--------C-CCCeeEEEcCHHHhcC-----CCCceeEEEHHhhHHhh----CCHHHHHHHH
Confidence 999999999999998732 1 2279999999999998 78999999999999987 5678899999
Q ss_pred HHhcCCCcEEEE---EeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeeh
Q 017369 193 SALLRPGGTFIG---TMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPF 269 (372)
Q Consensus 193 ~~~LkpgG~li~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~ 269 (372)
+|+|||||.+++ +.|... ++..+-..+-..+ +..+ ... +.. -...|.+ |.+++. .+.+.
T Consensus 140 ~RVLkPGG~l~ile~~~p~~~-~~~~~~~~y~~~i---lP~~---g~l----~~~---~~~~Y~y-L~~Si~---~f~~~ 201 (233)
T PF01209_consen 140 YRVLKPGGRLVILEFSKPRNP-LLRALYKFYFKYI---LPLI---GRL----LSG---DREAYRY-LPESIR---RFPSP 201 (233)
T ss_dssp HHHEEEEEEEEEEEEEB-SSH-HHHHHHHH--------------------------------------------------
T ss_pred HHHcCCCeEEEEeeccCCCCc-hhhceeeeeeccc---cccc---ccc----ccc---ccccccc-cccccc---ccccc
Confidence 999999999764 335432 3333222111000 0000 000 000 0012332 333332 36778
Q ss_pred HHHHHHHHHcCcEEEEec
Q 017369 270 HIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 270 ~~l~~l~~~~Gf~~v~~~ 287 (372)
+++.++++++||+.|+..
T Consensus 202 ~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 202 EELKELLEEAGFKNVEYR 219 (233)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 899999999999887654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=172.71 Aligned_cols=149 Identities=21% Similarity=0.313 Sum_probs=113.8
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-C-CCEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYV 111 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~ 111 (372)
+...++|+.+|..||..... .++.....|.+.++......++.+|||+|||+|..+..++.. + .++|+
T Consensus 33 ~~v~~~f~~~A~~YD~~~~~----------~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~ 102 (261)
T PLN02233 33 NERQALFNRIAPVYDNLNDL----------LSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM 102 (261)
T ss_pred HHHHHHHHHhhhHHHHhhhh----------hcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence 34567999999999853211 112233456655555556678899999999999988877664 2 35899
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHH
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (372)
|+|+|++|++.|+++..... .....++.++++|+.++++ ++++||+|++.+++|++ .++..++++
T Consensus 103 gvD~S~~ml~~A~~r~~~~~------~~~~~~i~~~~~d~~~lp~-----~~~sfD~V~~~~~l~~~----~d~~~~l~e 167 (261)
T PLN02233 103 GLDFSSEQLAVAASRQELKA------KSCYKNIEWIEGDATDLPF-----DDCYFDAITMGYGLRNV----VDRLKAMQE 167 (261)
T ss_pred EEECCHHHHHHHHHHhhhhh------hccCCCeEEEEcccccCCC-----CCCCEeEEEEecccccC----CCHHHHHHH
Confidence 99999999999988753100 1123468999999999887 67899999999999987 567899999
Q ss_pred HHHhcCCCcEEEEEeC
Q 017369 192 VSALLRPGGTFIGTMP 207 (372)
Q Consensus 192 i~~~LkpgG~li~~~~ 207 (372)
+.++|||||.+++...
T Consensus 168 i~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 168 MYRVLKPGSRVSILDF 183 (261)
T ss_pred HHHHcCcCcEEEEEEC
Confidence 9999999999887653
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=170.47 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=125.7
Q ss_pred HHHHHHHHHhC-----CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE
Q 017369 72 WIKSVLVQLYA-----RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (372)
Q Consensus 72 ~~k~~l~~~~~-----~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (372)
.+..++....+ .++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++... .++..++.+
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~--------~g~~~~v~~ 172 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAA--------QGLSDKVSF 172 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh--------cCCCCceEE
Confidence 34445544444 57789999999999999888876556899999999999999988763 234457999
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCC
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGN 226 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~ 226 (372)
+++|+.++++ ++++||+|++..+++|+ .+...+++++.++|||||.|++.......... +.
T Consensus 173 ~~~D~~~~~~-----~~~~FD~V~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~----------~~ 233 (340)
T PLN02244 173 QVADALNQPF-----EDGQFDLVWSMESGEHM----PDKRKFVQELARVAAPGGRIIIVTWCHRDLEP----------GE 233 (340)
T ss_pred EEcCcccCCC-----CCCCccEEEECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEEeccccccc----------cc
Confidence 9999998887 67899999999999997 45779999999999999999887643211000 00
Q ss_pred eEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHH
Q 017369 227 SVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHE 295 (372)
Q Consensus 227 ~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~ 295 (372)
. .+...... . +.. +......| .+.+.+.+.++++++||+.|+..++.+.+..
T Consensus 234 ~----~l~~~~~~-~------~~~-----i~~~~~~p-~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~ 285 (340)
T PLN02244 234 T----SLKPDEQK-L------LDK-----ICAAYYLP-AWCSTSDYVKLAESLGLQDIKTEDWSEHVAP 285 (340)
T ss_pred c----cCCHHHHH-H------HHH-----HHhhccCC-CCCCHHHHHHHHHHCCCCeeEeeeCcHHHHH
Confidence 0 00000000 0 000 00000011 1456789999999999999999888776443
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=166.02 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=115.6
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||||||+|.++..++.. ..+|+|+|+|+.|++.|+.+... .....++.++++|+.++++ .+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~--------~~~~~~i~~~~~dae~l~~-----~~ 196 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADM--------DPVTSTIEYLCTTAEKLAD-----EG 196 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHh--------cCcccceeEEecCHHHhhh-----cc
Confidence 5679999999999998887754 45899999999999999987642 1123468999999988775 56
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH--HHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI--IKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~--~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
++||+|+|..+++|+ .++..+++++.++|||||.+++++++.... ...+.. .++...-
T Consensus 197 ~~FD~Vi~~~vLeHv----~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~----------------~eyi~~~ 256 (322)
T PLN02396 197 RKFDAVLSLEVIEHV----ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVG----------------AEYILRW 256 (322)
T ss_pred CCCCEEEEhhHHHhc----CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhh----------------HHHHHhc
Confidence 799999999999998 567899999999999999999999876421 111000 0000000
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecCh
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNS 289 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~ 289 (372)
.+ .|.. ....+++.+++.++++++||++++...+
T Consensus 257 lp----~gth----------~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 257 LP----KGTH----------QWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred CC----CCCc----------CccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 01 0100 0012678899999999999999988643
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-20 Score=158.71 Aligned_cols=203 Identities=21% Similarity=0.295 Sum_probs=143.8
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-C------CCE
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K------IGY 109 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~------~~~ 109 (372)
...|+.+|..||. .++.. +++..+-|-...+..+.+.++.+|||+|||||..+..+++. . .++
T Consensus 63 ~~vF~~vA~~YD~-mND~m---------SlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~ 132 (296)
T KOG1540|consen 63 HHVFESVAKKYDI-MNDAM---------SLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK 132 (296)
T ss_pred HHHHHHHHHHHHH-HHHHh---------hcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCce
Confidence 3579999999983 44432 36777788444555667788999999999999999888874 2 257
Q ss_pred EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHH
Q 017369 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL 189 (372)
Q Consensus 110 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l 189 (372)
|+++|++++||+.+++|..+... .-...+.|+++|++++|+ ++.+||...+.+.+.+. .++.+.|
T Consensus 133 V~v~Dinp~mL~vgkqRa~~~~l------~~~~~~~w~~~dAE~LpF-----dd~s~D~yTiafGIRN~----th~~k~l 197 (296)
T KOG1540|consen 133 VTVLDINPHMLAVGKQRAKKRPL------KASSRVEWVEGDAEDLPF-----DDDSFDAYTIAFGIRNV----THIQKAL 197 (296)
T ss_pred EEEEeCCHHHHHHHHHHHhhcCC------CcCCceEEEeCCcccCCC-----CCCcceeEEEecceecC----CCHHHHH
Confidence 99999999999999999864211 112348999999999999 88999999999999987 7899999
Q ss_pred HHHHHhcCCCcEEEE-EeCChH-HHHHHHhhhcCCc----cCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCc
Q 017369 190 ANVSALLRPGGTFIG-TMPDAN-VIIKKLREVEGLA----IGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCP 263 (372)
Q Consensus 190 ~~i~~~LkpgG~li~-~~~~~~-~~~~~l~~~~~~~----~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~ 263 (372)
++++|+|||||+|.+ .++..+ ..+..+...+... .| .++. . .-..|.+ |-++|.
T Consensus 198 ~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG-~~ia----g------------d~~sYqY-LveSI~-- 257 (296)
T KOG1540|consen 198 REAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLG-EIIA----G------------DRKSYQY-LVESIR-- 257 (296)
T ss_pred HHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhh-Hhhh----h------------hHhhhhh-HHhhhh--
Confidence 999999999999764 444443 3444443322110 01 0000 0 0011222 222332
Q ss_pred eeeeehHHHHHHHHHcCcEEEE
Q 017369 264 EWIVPFHIFKSLAEEYDLELVF 285 (372)
Q Consensus 264 e~l~~~~~l~~l~~~~Gf~~v~ 285 (372)
.+.+.++|..+.+++||..+.
T Consensus 258 -rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 258 -RFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred -cCCCHHHHHHHHHHcCCcccc
Confidence 467888999999999998775
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-20 Score=167.02 Aligned_cols=243 Identities=17% Similarity=0.243 Sum_probs=152.1
Q ss_pred HHHHHHHHhhccccccchhhhhcCccccchhhhHH--HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeC
Q 017369 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNW--IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI 115 (372)
Q Consensus 38 ~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~--~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~ 115 (372)
..||.+|.+|.+....+...+ ++....| +..++..+. .++.+|||+|||+|..+..++..+ .+|+|+|+
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~-------~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~ 74 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQ-------IRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDL 74 (255)
T ss_pred CChhhHHHHHHHhccCCCccH-------HHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEEC
Confidence 468889999986443332222 1211111 223333332 456899999999999999888764 58999999
Q ss_pred ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 116 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
|+.|++.|+++... .++..++.++++|+.+++ + .+++||+|+|..+++|+ .++..+++++.+
T Consensus 75 s~~~l~~a~~~~~~--------~g~~~~v~~~~~d~~~l~~~-----~~~~fD~V~~~~vl~~~----~~~~~~l~~~~~ 137 (255)
T PRK11036 75 SAEMIQRAKQAAEA--------KGVSDNMQFIHCAAQDIAQH-----LETPVDLILFHAVLEWV----ADPKSVLQTLWS 137 (255)
T ss_pred CHHHHHHHHHHHHh--------cCCccceEEEEcCHHHHhhh-----cCCCCCEEEehhHHHhh----CCHHHHHHHHHH
Confidence 99999999998764 334457899999997753 2 45789999999999997 456789999999
Q ss_pred hcCCCcEEEEEeCChHHHH-HHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHH
Q 017369 195 LLRPGGTFIGTMPDANVII-KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFK 273 (372)
Q Consensus 195 ~LkpgG~li~~~~~~~~~~-~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~ 273 (372)
+|||||.+++..++..... ..+.. ++ ++. ....++.. .. +. ..|.+.++.+.+.
T Consensus 138 ~LkpgG~l~i~~~n~~~~~~~~~~~------~~------~~~--~~~~~~~~----~~--~~-----~~p~~~~~~~~l~ 192 (255)
T PRK11036 138 VLRPGGALSLMFYNANGLLMHNMVA------GN------FDY--VQAGMPKR----KK--RT-----LSPDYPLDPEQVY 192 (255)
T ss_pred HcCCCeEEEEEEECccHHHHHHHHc------cC------hHH--HHhcCccc----cc--cC-----CCCCCCCCHHHHH
Confidence 9999999998887765432 11110 00 000 00000000 00 00 0122356778999
Q ss_pred HHHHHcCcEEEEecC---hhHHHHHHh-CChhhHHHHHHhccCCCCCCCCCCCCH-hHHHHHHhhcEEEEEec
Q 017369 274 SLAEEYDLELVFVKN---SHEFVHEYL-KKPEYIELMRRLGALGDGNQDQSTLSA-DEWEVAYLYLAFVLRKR 341 (372)
Q Consensus 274 ~l~~~~Gf~~v~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ls~-~e~e~~~ly~~~vf~K~ 341 (372)
++++++||+++.... |.++..... ....+..+++--.. .+. +.+.-++.|.-++++|.
T Consensus 193 ~~l~~aGf~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~e~~----------~~~~~~~~~~~~~~h~~~~~~ 255 (255)
T PRK11036 193 QWLEEAGWQIMGKTGVRVFHDYLRNKHQQRDCFEALLELEQR----------YCRQEPYISLGRYIHVTARKP 255 (255)
T ss_pred HHHHHCCCeEeeeeeEEEEeeccCccccccchHHHHHHHHHH----------HhcCCchhhhhhHheEEEeCC
Confidence 999999999987665 455543221 12234444431111 111 22334567888888873
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=159.23 Aligned_cols=145 Identities=21% Similarity=0.416 Sum_probs=117.0
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYV 111 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~ 111 (372)
+....+|++++.+|+..... .++.....|...++..+.+.++.+|||+|||+|.++..++.. ..++|+
T Consensus 5 ~~~~~~f~~~a~~yd~~~~~----------~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~ 74 (231)
T TIGR02752 5 ERVHKVFEKIYKKYDRMNSV----------ISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVI 74 (231)
T ss_pred HHHHHHHHHhhhHHhHHHHH----------hcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEE
Confidence 34567999999999864221 234566778888887777788999999999999999888764 345899
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHH
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (372)
|+|+|+.+++.|+++... .+ ..++.++++|+.+.++ ++++||+|++.++++++ .+..+++++
T Consensus 75 gvD~s~~~~~~a~~~~~~--------~~-~~~v~~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~----~~~~~~l~~ 136 (231)
T TIGR02752 75 GLDFSENMLSVGRQKVKD--------AG-LHNVELVHGNAMELPF-----DDNSFDYVTIGFGLRNV----PDYMQVLRE 136 (231)
T ss_pred EEECCHHHHHHHHHHHHh--------cC-CCceEEEEechhcCCC-----CCCCccEEEEecccccC----CCHHHHHHH
Confidence 999999999999998753 12 2368999999988776 56899999999999887 456789999
Q ss_pred HHHhcCCCcEEEEEe
Q 017369 192 VSALLRPGGTFIGTM 206 (372)
Q Consensus 192 i~~~LkpgG~li~~~ 206 (372)
+.++|+|||++++..
T Consensus 137 ~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 137 MYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHcCcCeEEEEEE
Confidence 999999999988754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=158.60 Aligned_cols=218 Identities=18% Similarity=0.259 Sum_probs=142.8
Q ss_pred cchhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEE
Q 017369 32 EDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV 111 (372)
Q Consensus 32 ~~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~ 111 (372)
.++.....|++.+..|++.... .......++..+...++.+|||+|||+|..+..+... ..+|+
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~~---------------q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~ 68 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAEL---------------QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVT 68 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHHH---------------HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEE
Confidence 3445667899999999853211 1112233333333345789999999999988887654 45899
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHH
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (372)
|+|+|+.|++.|+++.. ...++++|+..+++ ++++||+|+++.+++|+ .++..++.+
T Consensus 69 ~~D~s~~~l~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~V~s~~~l~~~----~d~~~~l~~ 125 (251)
T PRK10258 69 ALDLSPPMLAQARQKDA--------------ADHYLAGDIESLPL-----ATATFDLAWSNLAVQWC----GNLSTALRE 125 (251)
T ss_pred EEECCHHHHHHHHhhCC--------------CCCEEEcCcccCcC-----CCCcEEEEEECchhhhc----CCHHHHHHH
Confidence 99999999999988754 24678999988776 67799999999999987 568899999
Q ss_pred HHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHH
Q 017369 192 VSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHI 271 (372)
Q Consensus 192 i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~ 271 (372)
+.++|+|||.++++++....+.+ +..... .+ +.. + . ...+.+.++
T Consensus 126 ~~~~Lk~gG~l~~~~~~~~~~~e-l~~~~~--------~~--~~~------~---------------~---~~~~~~~~~ 170 (251)
T PRK10258 126 LYRVVRPGGVVAFTTLVQGSLPE-LHQAWQ--------AV--DER------P---------------H---ANRFLPPDA 170 (251)
T ss_pred HHHHcCCCeEEEEEeCCCCchHH-HHHHHH--------Hh--ccC------C---------------c---cccCCCHHH
Confidence 99999999999998865432221 111100 00 000 0 0 001556788
Q ss_pred HHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHHHHhccCCCCCC----CCCCCCHhHHHHH
Q 017369 272 FKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQ----DQSTLSADEWEVA 330 (372)
Q Consensus 272 l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~ls~~e~e~~ 330 (372)
+..+++..|++..... +.. .-+...++++.++.+|.+.. ..+.++..+++.+
T Consensus 171 l~~~l~~~~~~~~~~~-~~~------~f~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~ 226 (251)
T PRK10258 171 IEQALNGWRYQHHIQP-ITL------WFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRL 226 (251)
T ss_pred HHHHHHhCCceeeeeE-EEE------ECCCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Confidence 8899988888653321 111 11334555555555544332 2466888887754
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=156.25 Aligned_cols=167 Identities=16% Similarity=0.238 Sum_probs=126.2
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++..+.+.++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|+++... ..++.+.++|+.
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----------~~~i~~~~~D~~ 109 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----------KNKIEFEANDIL 109 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----------CCceEEEECCcc
Confidence 455666677789999999999999988888665455899999999999999998652 246899999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH---HHHHHhhhcCCccCCeEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV---IIKKLREVEGLAIGNSVY 229 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~---~~~~l~~~~~~~~~~~~~ 229 (372)
+.++ ++++||+|++..+++|+ +..+...++++++++|||||+|+++.+.... ....+..
T Consensus 110 ~~~~-----~~~~FD~V~s~~~l~h~--~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~----------- 171 (263)
T PTZ00098 110 KKDF-----PENTFDMIYSRDAILHL--SYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKA----------- 171 (263)
T ss_pred cCCC-----CCCCeEEEEEhhhHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHH-----------
Confidence 7776 67899999999888886 4457889999999999999999987542210 0000000
Q ss_pred EEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHH
Q 017369 230 WIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEY 296 (372)
Q Consensus 230 ~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~ 296 (372)
+. .. ....+.+.+.+.++++++||+.+...+..+++...
T Consensus 172 -------~~------------------~~---~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~ 210 (263)
T PTZ00098 172 -------YI------------------KK---RKYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLEL 210 (263)
T ss_pred -------HH------------------Hh---cCCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHH
Confidence 00 00 00025678899999999999999988877776544
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=148.67 Aligned_cols=131 Identities=24% Similarity=0.338 Sum_probs=101.6
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHh--CCCCCEEEEecCCccccHHHHHHcCCCEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYV 111 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~--~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~ 111 (372)
+...++|+++|..||.. +.. .++.....|.+.++..+. ..++.+|||+|||+|..+..+......+|+
T Consensus 9 ~~v~~~f~~iA~~YD~~-n~~---------~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~ 78 (226)
T PRK05785 9 EELQEAYNKIPKAYDRA-NRF---------ISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVV 78 (226)
T ss_pred HHHHHHHHhhhHHHHHh-hhh---------ccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEE
Confidence 44567999999999853 221 123444567666655442 245789999999999988888765345899
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHH
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (372)
|+|+|++|++.|+++. .++++|+.++|+ ++++||+|++.+++||+ .++.+++++
T Consensus 79 gvD~S~~Ml~~a~~~~-----------------~~~~~d~~~lp~-----~d~sfD~v~~~~~l~~~----~d~~~~l~e 132 (226)
T PRK05785 79 ALDYAENMLKMNLVAD-----------------DKVVGSFEALPF-----RDKSFDVVMSSFALHAS----DNIEKVIAE 132 (226)
T ss_pred EECCCHHHHHHHHhcc-----------------ceEEechhhCCC-----CCCCEEEEEecChhhcc----CCHHHHHHH
Confidence 9999999999997642 246889988888 78999999999999987 568899999
Q ss_pred HHHhcCCCc
Q 017369 192 VSALLRPGG 200 (372)
Q Consensus 192 i~~~LkpgG 200 (372)
+.++|||.+
T Consensus 133 ~~RvLkp~~ 141 (226)
T PRK05785 133 FTRVSRKQV 141 (226)
T ss_pred HHHHhcCce
Confidence 999999953
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-18 Score=142.87 Aligned_cols=141 Identities=25% Similarity=0.376 Sum_probs=102.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..+...+. +++|+|+|+.+++. . .+.....+....+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~--------------~~~~~~~~~~~~~~----- 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----R--------------NVVFDNFDAQDPPF----- 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----T--------------TSEEEEEECHTHHC-----
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----h--------------hhhhhhhhhhhhhc-----
Confidence 46789999999999999988866655 99999999999988 1 12223332323333
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH-HHHHHhhhcCCccCCeEEEEEeCchhhhc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV-IIKKLREVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~-~~~~l~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
++++||+|+|..+++|+ .++..+|+++.++|||||++++++++... ........ .+...
T Consensus 75 ~~~~fD~i~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~------------~~~~~---- 134 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW------------RYDRP---- 134 (161)
T ss_dssp HSSSEEEEEEESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC------------CGTCH----
T ss_pred cccchhhHhhHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc------------CCcCc----
Confidence 56899999999999998 57999999999999999999999987531 11111110 00000
Q ss_pred ccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEe
Q 017369 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFV 286 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~ 286 (372)
.+ ... ++++.+.+.++++++||+++++
T Consensus 135 -------~~--------~~~----~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 135 -------YG--------GHV----HFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp -------HT--------TTT----EEBBHHHHHHHHHHTTEEEEE-
T ss_pred -------cC--------cee----ccCCHHHHHHHHHHCCCEEEEC
Confidence 00 011 4778999999999999999874
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-18 Score=133.62 Aligned_cols=109 Identities=29% Similarity=0.475 Sum_probs=89.3
Q ss_pred CCCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC-cccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~ 161 (372)
|+.+|||+|||+|..+..+++ ....+|+|+|+|+.|++.|+++... .+...++.++++|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~i~~~~~d~~~~~~------ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE--------EGLSDRITFVQGDAEFDPD------ 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH--------TTTTTTEEEEESCCHGGTT------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEECccccCcc------
Confidence 578999999999999999988 3666899999999999999999842 33467899999999 3332
Q ss_pred CCCCeeEEEecc-cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+.||+|++.. ++++++.. ++...+++.+.+.|+|||+++++.+
T Consensus 67 ~~~~~D~v~~~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp TSSCEEEEEECSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cCCCCCEEEECCCccccccch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 346799999999 66644332 6788999999999999999998763
|
... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-18 Score=147.82 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=92.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
-++.+|||+|||-|.++..+++.+ ..|+|+|+|+.+|+.|+.+.... ...+.+.+..++++.. .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~----------gv~i~y~~~~~edl~~-----~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALES----------GVNIDYRQATVEDLAS-----A 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhc----------cccccchhhhHHHHHh-----c
Confidence 488999999999998888888776 59999999999999999988742 2236677777776654 4
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
.++||+|+|..+++|+ +++..+++++.+++||||.+++++++..
T Consensus 122 ~~~FDvV~cmEVlEHv----~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 122 GGQFDVVTCMEVLEHV----PDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred CCCccEEEEhhHHHcc----CCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 4899999999999998 6788999999999999999999999864
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-18 Score=129.16 Aligned_cols=95 Identities=27% Similarity=0.437 Sum_probs=82.6
Q ss_pred EEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeE
Q 017369 89 LDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDI 168 (372)
Q Consensus 89 LDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~ 168 (372)
||+|||+|..+..+...+..+|+|+|+|+.+++.++++... ..+.+.++|+.++++ ++++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~------------~~~~~~~~d~~~l~~-----~~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN------------EGVSFRQGDAEDLPF-----PDNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT------------STEEEEESBTTSSSS------TT-EEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc------------cCchheeehHHhCcc-----ccccccc
Confidence 89999999999999887667899999999999999998863 346699999999998 7899999
Q ss_pred EEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 169 CSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 169 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
|++..+++|+ ++...+++++.|+|||||++++
T Consensus 64 v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 64 VFSNSVLHHL----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEESHGGGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccceeec----cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999997 7899999999999999999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=152.99 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=109.6
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|..+..++.. +..+|+|+|+|++|++.|+++.. ..++.++.+|+.++++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------------~~~i~~i~gD~e~lp~----- 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------LKECKIIEGDAEDLPF----- 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------------ccCCeEEeccHHhCCC-----
Confidence 46789999999999988887664 34589999999999999998754 2257889999988877
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC-hHHHHHHHhhhcCCccCCeEEEEEeCchhhhc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-ANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~-~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
++++||+|++..+++|+ .+...+|+++.++|||||.+++..+. ........
T Consensus 175 ~~~sFDvVIs~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~------------------------ 226 (340)
T PLN02490 175 PTDYADRYVSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF------------------------ 226 (340)
T ss_pred CCCceeEEEEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH------------------------
Confidence 57899999999999986 44568999999999999998775432 11111000
Q ss_pred ccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHH
Q 017369 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEF 292 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~ 292 (372)
+...|. .+.+.+++.++++++||+.++...+...
T Consensus 227 -------~~~~~~-----------~~~t~eEl~~lL~~aGF~~V~i~~i~~~ 260 (340)
T PLN02490 227 -------FADVWM-----------LFPKEEEYIEWFTKAGFKDVKLKRIGPK 260 (340)
T ss_pred -------hhhhhc-----------cCCCHHHHHHHHHHCCCeEEEEEEcChh
Confidence 000000 1335688999999999999988765543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-17 Score=143.75 Aligned_cols=165 Identities=20% Similarity=0.252 Sum_probs=122.2
Q ss_pred CEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++... .++..++.++.+|+...++ .+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~--------~gl~~~i~~~~~d~~~~~~------~~ 66 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRA--------LGLQGRIRIFYRDSAKDPF------PD 66 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh--------cCCCcceEEEecccccCCC------CC
Confidence 379999999999998887653 45899999999999999998864 3445678999999866554 35
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCC
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKS 244 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~ 244 (372)
+||+|++..+++|+ .+...+++++.++|+|||++++..+..... ..
T Consensus 67 ~fD~I~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---------------------~~--------- 112 (224)
T smart00828 67 TYDLVFGFEVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANLL---------------------SA--------- 112 (224)
T ss_pred CCCEeehHHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEcccccC---------------------cc---------
Confidence 89999999999987 457899999999999999998876422100 00
Q ss_pred CCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHHHHhc
Q 017369 245 SRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLG 310 (372)
Q Consensus 245 ~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (372)
.+. .....|+.+...+.++++++||++++..++..-+..+..++.|.+-..++.
T Consensus 113 ---~~~---------~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 166 (224)
T smart00828 113 ---IEH---------EETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFLYDPGFEDNLERLY 166 (224)
T ss_pred ---ccc---------cccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhccChhHHHHHHHhc
Confidence 000 000114667888999999999999998887776655554555555444443
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-16 Score=141.59 Aligned_cols=146 Identities=27% Similarity=0.419 Sum_probs=113.0
Q ss_pred chhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEE
Q 017369 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYY 110 (372)
Q Consensus 33 ~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v 110 (372)
.+...++|+.++.+|+...... . ......|...++......++.+|||+|||+|..+..++... ..++
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v 79 (239)
T PRK00216 10 QEKVAEMFDSIAPKYDLMNDLL-S---------FGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEV 79 (239)
T ss_pred hHHHHHHHHHhhhhHHHHHHHH-h---------cCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeE
Confidence 4556789999999997421111 0 12234566666666666678999999999999998887765 3689
Q ss_pred EEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHH
Q 017369 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190 (372)
Q Consensus 111 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~ 190 (372)
+|+|+++.+++.|+++... .+...++.++.+|+.+.++ +.++||+|++.+++++. .+...+++
T Consensus 80 ~~~D~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~-----~~~~~D~I~~~~~l~~~----~~~~~~l~ 142 (239)
T PRK00216 80 VGLDFSEGMLAVGREKLRD--------LGLSGNVEFVQGDAEALPF-----PDNSFDAVTIAFGLRNV----PDIDKALR 142 (239)
T ss_pred EEEeCCHHHHHHHHHhhcc--------cccccCeEEEecccccCCC-----CCCCccEEEEecccccC----CCHHHHHH
Confidence 9999999999999998753 2234468899999987665 56789999999999887 45778999
Q ss_pred HHHHhcCCCcEEEEE
Q 017369 191 NVSALLRPGGTFIGT 205 (372)
Q Consensus 191 ~i~~~LkpgG~li~~ 205 (372)
++.++|+|||.+++.
T Consensus 143 ~~~~~L~~gG~li~~ 157 (239)
T PRK00216 143 EMYRVLKPGGRLVIL 157 (239)
T ss_pred HHHHhccCCcEEEEE
Confidence 999999999998764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-16 Score=142.83 Aligned_cols=172 Identities=20% Similarity=0.213 Sum_probs=117.0
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..++..+.+++|.+|||||||.|..+..++.....+|+|+.+|++..+.|++++.. .++...+.+.+.|.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~--------~gl~~~v~v~~~D~ 121 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIRE--------AGLEDRVEVRLQDY 121 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHC--------STSSSTEEEEES-G
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEEeec
Confidence 3455566677889999999999999999999887455899999999999999999875 55667899999998
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC---ChHHHHHHHhhhcCCccCCeE
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREVEGLAIGNSV 228 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~---~~~~~~~~l~~~~~~~~~~~~ 228 (372)
.+++ .+||.|++..+++|+ ...+...+++++.++|||||.+++.+. +...... .. .
T Consensus 122 ~~~~--------~~fD~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~---~~----~---- 180 (273)
T PF02353_consen 122 RDLP--------GKFDRIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE---RR----S---- 180 (273)
T ss_dssp GG-----------S-SEEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC---TT----C----
T ss_pred cccC--------CCCCEEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhh---cC----C----
Confidence 7643 489999999999998 556788999999999999999986542 2211100 00 0
Q ss_pred EEEEeCchhhh-cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHH
Q 017369 229 YWIRLDEEFAD-KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEY 296 (372)
Q Consensus 229 ~~i~f~~~~~~-~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~ 296 (372)
...... ..||.. ++++.+.+...+++.||+++...++..-|...
T Consensus 181 -----~~~~i~kyiFPgg-------------------~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~T 225 (273)
T PF02353_consen 181 -----SSDFIRKYIFPGG-------------------YLPSLSEILRAAEDAGLEVEDVENLGRHYART 225 (273)
T ss_dssp -----CCHHHHHHTSTTS----------------------BHHHHHHHHHHTT-EEEEEEE-HHHHHHH
T ss_pred -----CceEEEEeeCCCC-------------------CCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHH
Confidence 000111 122321 37788889899999999999999888776544
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-16 Score=156.19 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=119.5
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++....+.++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|+++... ...++.|+++|+.+.+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~----------~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG----------RKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc----------CCCceEEEEcCcccCC
Confidence 334444567889999999999988888765555899999999999999887642 2346899999998877
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCc
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDE 235 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~ 235 (372)
+ ++++||+|+|..+++|+ .++..++++++++|||||.++++.+...... ..
T Consensus 328 ~-----~~~~fD~I~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--------------------~~ 378 (475)
T PLN02336 328 Y-----PDNSFDVIYSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDYCRSPGT--------------------PS 378 (475)
T ss_pred C-----CCCCEEEEEECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEeccCCCC--------------------Cc
Confidence 6 56789999999999998 5677999999999999999998764321000 00
Q ss_pred hhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHH
Q 017369 236 EFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHE 295 (372)
Q Consensus 236 ~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~ 295 (372)
..... + +... ...+.+...+.++++++||+++...++.+-+..
T Consensus 379 ~~~~~-------~-------~~~~---g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~ 421 (475)
T PLN02336 379 PEFAE-------Y-------IKQR---GYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQ 421 (475)
T ss_pred HHHHH-------H-------HHhc---CCCCCCHHHHHHHHHHCCCeeeeeecchHHHHH
Confidence 00000 0 0000 002557788999999999999988776665433
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=146.02 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=89.9
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
..++..+...++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.|+++ ++.++++|+.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~ 82 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------------GVDARTGDVR 82 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------------CCcEEEcChh
Confidence 345555556678999999999999998887653 45899999999999999653 3678899987
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+++ ++++||+|+|+.++||+ .+...++++++++|||||.+++.++.
T Consensus 83 ~~~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 83 DWK------PKPDTDVVVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCC------CCCCceEEEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 653 35789999999999997 45788999999999999999988764
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-17 Score=144.91 Aligned_cols=170 Identities=19% Similarity=0.204 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+-++.++..+.+.||.+|||||||.|..+..++.....+|+|+++|+++.+.+++++.. .++..+++++..|
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~--------~gl~~~v~v~l~d 130 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA--------RGLEDNVEVRLQD 130 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH--------cCCCcccEEEecc
Confidence 34556667778999999999999999999999887667999999999999999998875 4556689999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe-CChHHHHHHHhhhcCCccCCeEE
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-PDANVIIKKLREVEGLAIGNSVY 229 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~-~~~~~~~~~l~~~~~~~~~~~~~ 229 (372)
..++. +.||-|++..+++|+ ..+....+|+.+.++|+|||.+++.+ .....-.
T Consensus 131 ~rd~~--------e~fDrIvSvgmfEhv--g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~---------------- 184 (283)
T COG2230 131 YRDFE--------EPFDRIVSVGMFEHV--GKENYDDFFKKVYALLKPGGRMLLHSITGPDQEF---------------- 184 (283)
T ss_pred ccccc--------cccceeeehhhHHHh--CcccHHHHHHHHHhhcCCCceEEEEEecCCCccc----------------
Confidence 87654 459999999999998 66789999999999999999977543 2221000
Q ss_pred EEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHH
Q 017369 230 WIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVH 294 (372)
Q Consensus 230 ~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~ 294 (372)
. . ...|-.+|-|.-. ++++.+.+.+.+.++||.+....++..-|.
T Consensus 185 ~-~------------~~~~i~~yiFPgG-------~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa 229 (283)
T COG2230 185 R-R------------FPDFIDKYIFPGG-------ELPSISEILELASEAGFVVLDVESLRPHYA 229 (283)
T ss_pred c-c------------chHHHHHhCCCCC-------cCCCHHHHHHHHHhcCcEEehHhhhcHHHH
Confidence 0 0 0112222222111 477888999999999999999888776553
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=140.62 Aligned_cols=139 Identities=21% Similarity=0.378 Sum_probs=110.4
Q ss_pred HHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCC--CEEEEEeC
Q 017369 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDI 115 (372)
Q Consensus 38 ~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~ 115 (372)
++|+.++.+||...... .......|...++......++.+|||+|||+|..+..++.... .+++|+|+
T Consensus 3 ~~~~~~~~~y~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~ 72 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLL----------SFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDF 72 (223)
T ss_pred hHHHHHHhhhhHHHHHH----------hcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEEC
Confidence 58999999999653221 1123456666676666666889999999999999998887655 48999999
Q ss_pred ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHh
Q 017369 116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195 (372)
Q Consensus 116 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~ 195 (372)
++.+++.++++... ..++.+..+|+.+.++ +.++||+|++.+++++. .++..+++++.+.
T Consensus 73 ~~~~~~~~~~~~~~-----------~~~i~~~~~d~~~~~~-----~~~~~D~i~~~~~~~~~----~~~~~~l~~~~~~ 132 (223)
T TIGR01934 73 SSEMLEVAKKKSEL-----------PLNIEFIQADAEALPF-----EDNSFDAVTIAFGLRNV----TDIQKALREMYRV 132 (223)
T ss_pred CHHHHHHHHHHhcc-----------CCCceEEecchhcCCC-----CCCcEEEEEEeeeeCCc----ccHHHHHHHHHHH
Confidence 99999999887641 3368899999988765 45789999999999886 5678999999999
Q ss_pred cCCCcEEEEEe
Q 017369 196 LRPGGTFIGTM 206 (372)
Q Consensus 196 LkpgG~li~~~ 206 (372)
|+|||++++..
T Consensus 133 L~~gG~l~~~~ 143 (223)
T TIGR01934 133 LKPGGRLVILE 143 (223)
T ss_pred cCCCcEEEEEE
Confidence 99999988643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=149.38 Aligned_cols=109 Identities=20% Similarity=0.175 Sum_probs=88.1
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+...++.+|||||||+|.++..++..+...|+|+|+|+.|+..++..... .+...++.++.+|+.++++
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~--------~~~~~~i~~~~~d~e~lp~--- 186 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKL--------LGNDQRAHLLPLGIEQLPA--- 186 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHh--------cCCCCCeEEEeCCHHHCCC---
Confidence 33356789999999999999999887777899999999999765443221 0113368999999987764
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++.||+|+|..+++|. .++..+|++++++|+|||.+++++
T Consensus 187 ---~~~FD~V~s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 ---LKAFDTVFSMGVLYHR----RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ---cCCcCEEEECChhhcc----CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 4689999999999987 567889999999999999999875
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=143.69 Aligned_cols=109 Identities=21% Similarity=0.404 Sum_probs=90.3
Q ss_pred hCCCCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
...++.+|||+|||+|..+..++. .+..+++|+|+|+.|++.|++++.. .+...++.++++|+.+.++
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~--------~~~~~~v~~~~~d~~~~~~- 123 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA--------YKAPTPVDVIEGDIRDIAI- 123 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEeCChhhCCC-
Confidence 356789999999999998887765 2446899999999999999999863 2234479999999987664
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+|+|++.+++||+ +..+...++++++++|||||.|+++.
T Consensus 124 ------~~~D~vv~~~~l~~l--~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 124 ------ENASMVVLNFTLQFL--EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ------CCCCEEehhhHHHhC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 358999999999987 45667899999999999999998864
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=131.77 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=120.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+.|+++|||+|||.|.++..+........+|+|++++.+..|.++. +.++++|+.+- +. .
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG----------------v~Viq~Dld~g-L~--~ 70 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG----------------VSVIQGDLDEG-LA--D 70 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC----------------CCEEECCHHHh-Hh--h
Confidence 45799999999999999998888777778999999999999887753 66799998652 11 1
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhh-cCCccCCeEEEEEeCchhhh
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREV-EGLAIGNSVYWIRLDEEFAD 239 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~-~~~~~~~~~~~i~f~~~~~~ 239 (372)
.++++||.|+++.+++++ ..+..+|+++.|+ |...++++||...+..++.-. .|.
T Consensus 71 f~d~sFD~VIlsqtLQ~~----~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~Gr----------------- 126 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAV----RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGR----------------- 126 (193)
T ss_pred CCCCCccEEehHhHHHhH----hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCC-----------------
Confidence 178999999999999987 7788898888665 668899999998776665543 111
Q ss_pred cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 240 KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 240 ~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
.|-. -...|.|+-...+ ++.+..+|+++|++.|+++++...+.
T Consensus 127 --mPvt--~~lPy~WYdTPNi----h~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 127 --MPVT--KALPYEWYDTPNI----HLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred --CCCC--CCCCCcccCCCCc----ccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 1111 1122444444444 48899999999999999999887443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=132.54 Aligned_cols=109 Identities=30% Similarity=0.476 Sum_probs=91.0
Q ss_pred CCCCEEEEecCCccccHHHHHH-c-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDK-A-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
+.+.+|||+|||+|.++..++. . ...+++|+|+|+.|++.|+++++. .++. +++|+++|+.+++- .+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~--------~~~~-ni~~~~~d~~~l~~--~~ 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE--------LGLD-NIEFIQGDIEDLPQ--EL 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH--------TTST-TEEEEESBTTCGCG--CS
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc--------cccc-ccceEEeehhcccc--cc
Confidence 4578999999999999999984 2 456899999999999999998763 2333 79999999998651 01
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+ +.||+|++..+++|+ .+...+++++.+.|++||.+++..+.
T Consensus 71 -~-~~~D~I~~~~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 71 -E-EKFDIIISNGVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -S-TTEEEEEEESTGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -C-CCeeEEEEcCchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 3 789999999999887 67789999999999999999988877
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=146.47 Aligned_cols=111 Identities=17% Similarity=0.078 Sum_probs=87.1
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+...++.+|||+|||+|.++..++..+...|+|+|+|+.|+..++..... .....++.+..+++.+++.
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~--------~~~~~~v~~~~~~ie~lp~-- 185 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKL--------LDNDKRAILEPLGIEQLHE-- 185 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHH--------hccCCCeEEEECCHHHCCC--
Confidence 334567899999999999998888877766899999999999865432110 0012357788888877664
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
...||+|+|..+++|. .++..+|++++++|||||.|++++.
T Consensus 186 ----~~~FD~V~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 ----LYAFDTVFSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred ----CCCcCEEEEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 3589999999999997 5678899999999999999998753
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-16 Score=138.95 Aligned_cols=110 Identities=18% Similarity=0.374 Sum_probs=91.0
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc---CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
...++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|++++.. .+...++.++++|+.+.++
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~- 120 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA--------YHSEIPVEILCNDIRHVEI- 120 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEECChhhCCC-
Confidence 3467889999999999998888763 356899999999999999998763 1223468999999987765
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+|+|++.+++||+ ...+...+++++.++|+|||.++++.+
T Consensus 121 ------~~~d~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 121 ------KNASMVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ------CCCCEEeeecchhhC--CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 358999999999987 456788999999999999999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=133.93 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=86.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|++.... .++ .++.+.++|+.+.++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~----- 92 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAA--------ENL-DNLHTAVVDLNNLTF----- 92 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CcceEEecChhhCCc-----
Confidence 4467899999999999998888764 4899999999999999987763 122 257888899876654
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+++||+|+|..++||+ +..+...+++++.++|+|||++++
T Consensus 93 -~~~fD~I~~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 -DGEYDFILSTVVLMFL--EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -CCCcCEEEEecchhhC--CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3579999999999876 556789999999999999999654
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-16 Score=140.73 Aligned_cols=112 Identities=20% Similarity=0.355 Sum_probs=93.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+.++..+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|+++.. ++.++.+|+
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~--------------~~~~~~~d~ 85 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP--------------DCQFVEADI 85 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC--------------CCeEEECch
Confidence 444555556677899999999999999888765 34689999999999999998764 478899998
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.... +.++||+|+++.++||+ .+...+++++.++|||||.+++++|+
T Consensus 86 ~~~~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 86 ASWQ------PPQALDLIFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hccC------CCCCccEEEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 7543 34689999999999987 45778999999999999999998765
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-16 Score=121.76 Aligned_cols=96 Identities=27% Similarity=0.521 Sum_probs=79.0
Q ss_pred EEEecCCccccHHHHHHcC----CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 88 VLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 88 VLDlGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
|||+|||+|..+..+.... ..+++|+|+|++|++.|+++.... ..+++++++|+.+++. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----------~~~~~~~~~D~~~l~~-----~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----------GPKVRFVQADARDLPF-----SD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----------TTTSEEEESCTTCHHH-----HS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----------CCceEEEECCHhHCcc-----cC
Confidence 7999999999999988753 268999999999999999988631 2378999999998776 56
Q ss_pred CCeeEEEecc-cccccCCCHHHHHHHHHHHHHhcCCCc
Q 017369 164 APFDICSCQF-AMHYSWSTEARARRALANVSALLRPGG 200 (372)
Q Consensus 164 ~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG 200 (372)
++||+|+|.+ +++|+ +.++...+++++.++|+|||
T Consensus 66 ~~~D~v~~~~~~~~~~--~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHL--SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGS--SHHHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCC--CHHHHHHHHHHHHHHhCCCC
Confidence 7999999955 48886 67889999999999999998
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=144.22 Aligned_cols=166 Identities=19% Similarity=0.172 Sum_probs=120.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+.+.++.+|||+|||+|..+..++.....+|+|+|+|+++++.|+++... ..+++..+|..
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~------------l~v~~~~~D~~ 223 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG------------LPVEIRLQDYR 223 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------------CeEEEEECchh
Confidence 334455566788999999999999999888776555899999999999999998752 24777888875
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIR 232 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 232 (372)
++ +++||+|++..+++|+ ...+...+++++.++|||||++++.+...... .
T Consensus 224 ~l--------~~~fD~Ivs~~~~ehv--g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~-----------~-------- 274 (383)
T PRK11705 224 DL--------NGQFDRIVSVGMFEHV--GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKT-----------D-------- 274 (383)
T ss_pred hc--------CCCCCEEEEeCchhhC--ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCC-----------C--------
Confidence 42 3689999999999887 44667899999999999999998876432110 0
Q ss_pred eCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 233 LDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 233 f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
.....|-.+|.|.-. ++.+.+.+.+.++ .||++.+..++...|...+
T Consensus 275 ----------~~~~~~i~~yifp~g-------~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL 321 (383)
T PRK11705 275 ----------TNVDPWINKYIFPNG-------CLPSVRQIAQASE-GLFVMEDWHNFGADYDRTL 321 (383)
T ss_pred ----------CCCCCCceeeecCCC-------cCCCHHHHHHHHH-CCcEEEEEecChhhHHHHH
Confidence 001113233333111 3667777777655 6999999888888775443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=130.15 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=84.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++..+ ..|+|+|+|+.|++.++++... .++ ++.+.++|+...++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~--------~~~--~v~~~~~d~~~~~~----- 91 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKAR--------ENL--PLRTDAYDINAAAL----- 91 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHH--------hCC--CceeEeccchhccc-----
Confidence 3456799999999999999888754 4899999999999999887653 222 36777778765443
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+++||+|++..++|++ +..+...+++++.++|+|||++++.
T Consensus 92 -~~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -NEDYDFIFSTVVFMFL--QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -cCCCCEEEEecccccC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3579999999999886 4567889999999999999986543
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=127.59 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=113.5
Q ss_pred HHHHHHHHHh--CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 72 WIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 72 ~~k~~l~~~~--~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
++..++..+. ..++.+|||+|||+|.++..++... ..|+|+|+|++|++.|++++.. .....++.+.++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~--------~~~~~~i~~~~~ 111 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQG--------RDVAGNVEFEVN 111 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEEC
Confidence 3333443333 3568899999999999999887654 4899999999999999998763 222346899999
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH-HHHHHHhhhcCCccCCeE
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN-VIIKKLREVEGLAIGNSV 228 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~-~~~~~l~~~~~~~~~~~~ 228 (372)
|+.+.+ ++||+|++..+++|+ +..+...+++++.+++++++++.+...... .....+...
T Consensus 112 d~~~~~--------~~fD~ii~~~~l~~~--~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------- 172 (219)
T TIGR02021 112 DLLSLC--------GEFDIVVCMDVLIHY--PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGEL--------- 172 (219)
T ss_pred ChhhCC--------CCcCEEEEhhHHHhC--CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhh---------
Confidence 987532 689999999998876 456788899999999987765554322211 111111110
Q ss_pred EEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhH
Q 017369 229 YWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHE 291 (372)
Q Consensus 229 ~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~ 291 (372)
++.. ....+.+.++.+++.++++++||+++....+..
T Consensus 173 -------------~~~~-------------~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 173 -------------FPGS-------------SRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred -------------CcCc-------------ccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 0000 000112467888999999999999998864443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=130.44 Aligned_cols=102 Identities=21% Similarity=0.195 Sum_probs=78.2
Q ss_pred CCCCEEEEecCCccccHHHHHHc----C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA----K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.++.+|||+|||+|..+..++.. + ..+|+|+|+|+.|++.|+++... .++.+.+.++..++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------------~~~~~~~~~~~~l~~- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------------PGVTFRQAVSDELVA- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------------CCCeEEEEecccccc-
Confidence 46789999999999987776542 2 24799999999999999887542 235666666665554
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
++++||+|+|++++||+ +.++...+++++.++++ |+.++.
T Consensus 126 ----~~~~fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~-~~~~i~ 165 (232)
T PRK06202 126 ----EGERFDVVTSNHFLHHL--DDAEVVRLLADSAALAR-RLVLHN 165 (232)
T ss_pred ----cCCCccEEEECCeeecC--ChHHHHHHHHHHHHhcC-eeEEEe
Confidence 46799999999999998 33456789999999998 444443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=134.15 Aligned_cols=106 Identities=25% Similarity=0.459 Sum_probs=89.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+.+|||+|||+|.++..++... ..+++|+|+|+.+++.++++.. .++.++.+|+.+.++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------------~~~~~~~~d~~~~~~----- 94 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------------ENVQFICGDAEKLPL----- 94 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------------CCCeEEecchhhCCC-----
Confidence 345799999999999998887754 3469999999999999988764 157889999988776
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
++++||+|++..++||+ .+...++.++.++|+|||.+++.++...
T Consensus 95 ~~~~fD~vi~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred CCCceeEEEEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 56889999999999987 5678999999999999999999887554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-15 Score=134.33 Aligned_cols=110 Identities=20% Similarity=0.262 Sum_probs=88.5
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
|.+|||+|||+|.++..+++.+ +.|+|+|+++.|++.|++... +.+- ....+..++++.+.|++... +
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~-~dP~--~~~~~~y~l~~~~~~~E~~~--------~ 157 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKK-MDPV--LEGAIAYRLEYEDTDVEGLT--------G 157 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhh-cCch--hccccceeeehhhcchhhcc--------c
Confidence 4789999999999999998766 499999999999999999843 2110 01122335677777776543 5
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
.||.|+|+.+++|+ .++..++..+.+.|||||.+++++.+..
T Consensus 158 ~fDaVvcsevleHV----~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHV----KDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred ccceeeeHHHHHHH----hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 69999999999998 8899999999999999999999987764
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=131.83 Aligned_cols=108 Identities=20% Similarity=0.350 Sum_probs=87.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+|||+|||+|..+..++.. + .++|+|+|+|+.|++.|+++.... ++ .++.+.++|+.++++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--------g~-~~v~~~~~d~~~l~~-- 142 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--------GY-TNVEFRLGEIEALPV-- 142 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--------CC-CCEEEEEcchhhCCC--
Confidence 3568899999999999877665543 2 347999999999999999987531 22 368899999988776
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++||+|+++.++++. .+...+++++.++|||||++++..
T Consensus 143 ---~~~~fD~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 143 ---ADNSVDVIISNCVINLS----PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ---CCCceeEEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 56799999999999876 456789999999999999998754
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-14 Score=131.51 Aligned_cols=155 Identities=14% Similarity=0.182 Sum_probs=101.1
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+|||+|.++..++..+ ..|+|+|+|+.|++.|+++....... .....++.|.++|+.++ +
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~----~~~~~~~~f~~~Dl~~l--------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAA----LPPEVLPKFEANDLESL--------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccc----cccccceEEEEcchhhc--------C
Confidence 57899999999999999888754 48999999999999999987531000 00023578888887532 4
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFK 243 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~ 243 (372)
++||+|+|..+++|+ ..+....+++.+.+ +.+||.++...|... ....+... + ..|+
T Consensus 211 ~~fD~Vv~~~vL~H~--p~~~~~~ll~~l~~-l~~g~liIs~~p~~~-~~~~l~~~-----g--------------~~~~ 267 (315)
T PLN02585 211 GKYDTVTCLDVLIHY--PQDKADGMIAHLAS-LAEKRLIISFAPKTL-YYDILKRI-----G--------------ELFP 267 (315)
T ss_pred CCcCEEEEcCEEEec--CHHHHHHHHHHHHh-hcCCEEEEEeCCcch-HHHHHHHH-----H--------------hhcC
Confidence 689999999999886 33445667777775 456666554444431 11111110 0 0011
Q ss_pred CCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 244 SSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 244 ~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.+. .....|+.+.++++++++++||+++...
T Consensus 268 g~~-------------~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 268 GPS-------------KATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred CCC-------------cCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 000 0001146688999999999999988665
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=129.24 Aligned_cols=154 Identities=17% Similarity=0.189 Sum_probs=101.6
Q ss_pred CccccchhhhHHHHHHHH--hhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc
Q 017369 28 SHFLEDESTKVFARKVAD--HYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA 105 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~va~--~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~ 105 (372)
..+.-++.-...|++|.. .|- +. |.+ ...+..+...+.... .++.+|||+|||+|..+..++..
T Consensus 19 ~~~~yd~~G~~lf~~i~~~peYy--~t-----r~E-----~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~ 84 (301)
T TIGR03438 19 PKYFYDARGSELFEQICELPEYY--PT-----RTE-----AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDA 84 (301)
T ss_pred chhcccchHHHHHHHHHCCCccc--cH-----HHH-----HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHh
Confidence 344445566678888854 221 11 111 123344444443332 46789999999999999988876
Q ss_pred C--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-cccccccCCCCCeeEEEecccccccCCCH
Q 017369 106 K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVLADDAPFDICSCQFAMHYSWSTE 182 (372)
Q Consensus 106 ~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~~~ 182 (372)
. ..+|+|+|+|++|++.|++++... ....++.++++|+.+ .++.... ......++++..+++++ +.
T Consensus 85 l~~~~~~~~iDiS~~mL~~a~~~l~~~--------~p~~~v~~i~gD~~~~~~~~~~~-~~~~~~~~~~gs~~~~~--~~ 153 (301)
T TIGR03438 85 LRQPARYVPIDISADALKESAAALAAD--------YPQLEVHGICADFTQPLALPPEP-AAGRRLGFFPGSTIGNF--TP 153 (301)
T ss_pred hccCCeEEEEECCHHHHHHHHHHHHhh--------CCCceEEEEEEcccchhhhhccc-ccCCeEEEEecccccCC--CH
Confidence 4 457999999999999999887521 112357788999976 3331110 01133445545567765 56
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 183 ARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 183 ~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++...+|++++++|+|||.|++.+
T Consensus 154 ~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 154 EEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEec
Confidence 788999999999999999998765
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=127.44 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=103.0
Q ss_pred hhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHH-hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEe
Q 017369 36 TKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID 114 (372)
Q Consensus 36 ~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~-~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD 114 (372)
..+.++.+|+.|......... +..+++..-..+... ...++.+|||+|||+|..+..+...+ ..++|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD 77 (233)
T PRK05134 8 EIAKFSALAARWWDPNGEFKP---------LHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGID 77 (233)
T ss_pred HHHHHHHHHHHHhccCCCcHH---------HHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEc
Confidence 456778888866532221111 223333322333322 34578899999999999888887654 4799999
Q ss_pred CChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 115 ~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
+++.+++.|+++.... ...+.+...|+.+.+.. ..++||+|++..+++|. .+...+++++.+
T Consensus 78 ~s~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~fD~Ii~~~~l~~~----~~~~~~l~~~~~ 139 (233)
T PRK05134 78 ASEENIEVARLHALES----------GLKIDYRQTTAEELAAE----HPGQFDVVTCMEMLEHV----PDPASFVRACAK 139 (233)
T ss_pred CCHHHHHHHHHHHHHc----------CCceEEEecCHHHhhhh----cCCCccEEEEhhHhhcc----CCHHHHHHHHHH
Confidence 9999999999886521 22467777777655421 34789999999999887 457789999999
Q ss_pred hcCCCcEEEEEeCCh
Q 017369 195 LLRPGGTFIGTMPDA 209 (372)
Q Consensus 195 ~LkpgG~li~~~~~~ 209 (372)
.|+|||.++++.++.
T Consensus 140 ~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 140 LVKPGGLVFFSTLNR 154 (233)
T ss_pred HcCCCcEEEEEecCC
Confidence 999999999887654
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=125.78 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=83.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||+|||+|..+..+... +...++|+|+|+.|++.|+++.. ++.+.++|+.+ ++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------------~~~~~~~d~~~-~~---- 101 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------------NINIIQGSLFD-PF---- 101 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------------CCcEEEeeccC-CC----
Confidence 356789999999999999888765 45689999999999999988654 36778889877 55
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++||+|++..+++|+ +.++..++++++.+++ ++++++..
T Consensus 102 -~~~sfD~V~~~~vL~hl--~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 102 -KDNFFDLVLTKGVLIHI--NPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -CCCCEEEEEECChhhhC--CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 67899999999999997 5678899999999998 45665544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=143.07 Aligned_cols=109 Identities=22% Similarity=0.359 Sum_probs=88.9
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--cccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~ 159 (372)
.++.+|||+|||+|..+..++.. +...|+|+|+|+.|++.|+++.... ..++.++++|+.+++ +
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----------g~~ie~I~gDa~dLp~~f--- 483 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----------GRSWNVIKGDAINLSSSF--- 483 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----------CCCeEEEEcchHhCcccc---
Confidence 46889999999999988877664 4568999999999999999876421 235788999988765 4
Q ss_pred cCCCCCeeEEEecccccccCC---------CHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWS---------TEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~---------~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++||+|+++.++|+++. +..+...+|+++.++|||||.+++..
T Consensus 484 --edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 484 --EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred --CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5689999999999987632 24578899999999999999998864
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=127.11 Aligned_cols=116 Identities=28% Similarity=0.450 Sum_probs=95.6
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
..++....+.++.+|||+|||+|.++..++... .++++|+|+|+.+++.|+++... ...++.+..+|+
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----------~~~~~~~~~~d~ 78 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----------LGPNVEFVRGDA 78 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----------CCCceEEEeccc
Confidence 334555567788999999999999998887653 45899999999999999887321 134688999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
...++ ++++||+|++..+++|+ .++..+++++.++|+|||.+++..++
T Consensus 79 ~~~~~-----~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 79 DGLPF-----PDGSFDAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccCCC-----CCCCceEEEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 87776 56799999999999987 56788999999999999999987764
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=131.42 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=85.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.++++... .++ ++.+.+.|+....+ +
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~--------~~l--~v~~~~~D~~~~~~------~ 182 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEK--------ENL--NIRTGLYDINSASI------Q 182 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHH--------cCC--ceEEEEechhcccc------c
Confidence 44599999999999999887754 4899999999999999988763 222 57888888866443 4
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++||+|++..++||+ +.++...+++++.++|+|||++++..
T Consensus 183 ~~fD~I~~~~vl~~l--~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 183 EEYDFILSTVVLMFL--NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCccEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999999999987 55688899999999999999976543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.2e-16 Score=119.45 Aligned_cols=98 Identities=24% Similarity=0.342 Sum_probs=61.4
Q ss_pred EEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCee
Q 017369 89 LDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD 167 (372)
Q Consensus 89 LDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD 167 (372)
||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++..... .........+..+.... . ..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~--~-~~~~fD 68 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---------NDNFERLRFDVLDLFDY--D-PPESFD 68 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------EEEEE--SSS---C--C-C----S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---------CcceeEEEeecCChhhc--c-cccccc
Confidence 79999999999998876 45579999999999988888776321 11233333333322110 0 225999
Q ss_pred EEEecccccccCCCHHHHHHHHHHHHHhcCCCcEE
Q 017369 168 ICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202 (372)
Q Consensus 168 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~l 202 (372)
+|++..++||+ +++..++++++++|||||+|
T Consensus 69 ~V~~~~vl~~l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 69 LVVASNVLHHL----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEE-TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred eehhhhhHhhh----hhHHHHHHHHHHHcCCCCCC
Confidence 99999999998 67889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=121.76 Aligned_cols=106 Identities=16% Similarity=0.281 Sum_probs=84.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.++||+|||.|+.+..++..+. .|+++|+|+.+++.+.+..... ...++..+.|+.+..+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~----------~l~i~~~~~Dl~~~~~----- 91 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEE----------GLDIRTRVADLNDFDF----- 91 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHT----------T-TEEEEE-BGCCBS------
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhc----------CceeEEEEecchhccc-----
Confidence 34568999999999999999988776 7999999999999988776532 3358889999987665
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++.||+|++..+++|+ ..+....+++++...++|||++++.+
T Consensus 92 -~~~yD~I~st~v~~fL--~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 92 -PEEYDFIVSTVVFMFL--QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -TTTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -cCCcCEEEEEEEeccC--CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 3689999999899987 55677889999999999999977643
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-14 Score=119.10 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=85.1
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+....-.++||+|||.|.++..++.. ...++++|+|+.+++.|++|... ..++.|+++|+.+..
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~-----------~~~V~~~~~dvp~~~---- 102 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG-----------LPHVEWIQADVPEFW---- 102 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT------------SSEEEEES-TTT------
T ss_pred cCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC-----------CCCeEEEECcCCCCC----
Confidence 44445689999999999999998765 56899999999999999999874 347999999996643
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.+.||+|+++.+++|+ .+.+++..++.++...|+|||.+|+...
T Consensus 103 --P~~~FDLIV~SEVlYYL-~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 103 --PEGRFDLIVLSEVLYYL-DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ---SS-EEEEEEES-GGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --CCCCeeEEEEehHhHcC-CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 67899999999999886 4457899999999999999999887654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=123.27 Aligned_cols=110 Identities=22% Similarity=0.331 Sum_probs=94.3
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++......+..+|.|+|||+|..+..+..+ +...++|+|.|++||+.|+++.. +++|..+|+.+.
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp--------------~~~f~~aDl~~w 87 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP--------------DATFEEADLRTW 87 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC--------------CCceecccHhhc
Confidence 455556667889999999999888777765 55679999999999999998876 589999999764
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
. +..++|+++++.++||+ ++--.+|..+...|.|||.+.+.+|+.
T Consensus 88 ~------p~~~~dllfaNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 88 K------PEQPTDLLFANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred C------CCCccchhhhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 4 67899999999999999 556689999999999999999999864
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=122.03 Aligned_cols=130 Identities=22% Similarity=0.218 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc-c--cccCCCcCeEE
Q 017369 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH-Q--RRKKFSFPARL 146 (372)
Q Consensus 70 ~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~--~~~~~~~~~~~ 146 (372)
+..+...+..+...++.+|||+|||.|.++..++..+. .|+|+|+|+.+++.+........... . ....-..++++
T Consensus 20 ~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 98 (213)
T TIGR03840 20 NPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI 98 (213)
T ss_pred CHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence 34444444443345778999999999999999987655 79999999999998644321100000 0 00001346899
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++|+.+++.. ..+.||.|+...+++|+ +.+....+++.+.++|||||++++.+
T Consensus 99 ~~~D~~~~~~~----~~~~fD~i~D~~~~~~l--~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 99 FCGDFFALTAA----DLGPVDAVYDRAALIAL--PEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred EEccCCCCCcc----cCCCcCEEEechhhccC--CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 99999876531 13579999998888887 66778899999999999999865443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=121.27 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=87.2
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeE-EEECcCcccc-cccccCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVH-LDKVLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~-~~~~~~~ 162 (372)
...|||+|||||.....+-..+...|+++|+++.|-+.|.+++.+ +...++. |++++.++++ + +
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E---------~k~~~~~~fvva~ge~l~~l-----~ 142 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAE---------KKPLQVERFVVADGENLPQL-----A 142 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhh---------ccCcceEEEEeechhcCccc-----c
Confidence 346799999999887766555677899999999999999998874 2244565 9999999887 4 6
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++|.|+|.+++.-. +++.+.|+++.++|||||++++-.
T Consensus 143 d~s~DtVV~TlvLCSv----e~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 143 DGSYDTVVCTLVLCSV----EDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred cCCeeeEEEEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 8999999999998744 889999999999999999987643
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=129.95 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCcccc----HHHHHHcC------CCEEEEEeCChHHHHHHHHHhcCCCc-c-----------------c
Q 017369 83 RRGDVVLDLACGKGGD----LIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNGDAD-H-----------------H 134 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~----~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~-~-----------------~ 134 (372)
.++.+|||+|||+|.- +..+.... ..+|+|+|+|+.||+.|++..-.... + .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999973 33333321 24799999999999999975321000 0 0
Q ss_pred ccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 135 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.-...+..++.|.++|+.+.+. +.++||+|+|.++++|+ +.++...++++++++|+|||++++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~-----~~~~fD~I~crnvl~yf--~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP-----PLGDFDLIFCRNVLIYF--DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC-----ccCCCCEEEechhHHhC--CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0000122468999999988665 56899999999999997 56778899999999999999998753
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-13 Score=119.98 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=105.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++..+. .|+|+|+|+.|++.|+++... .+...++.+.++|+. .
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~--------~~~~~~i~~~~~d~~---~----- 123 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPE--------AGLAGNITFEVGDLE---S----- 123 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHh--------cCCccCcEEEEcCch---h-----
Confidence 35678999999999999988877654 699999999999999998763 222246888988843 2
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
.+++||+|++..+++|+ +.++...+++++.+.+++++ ++...+.. .....+..... .
T Consensus 124 ~~~~fD~v~~~~~l~~~--~~~~~~~~l~~l~~~~~~~~-~i~~~~~~-~~~~~~~~l~~-------------------~ 180 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHY--PQEDAARMLAHLASLTRGSL-IFTFAPYT-PLLALLHWIGG-------------------L 180 (230)
T ss_pred ccCCcCEEEEcchhhcC--CHHHHHHHHHHHHhhcCCeE-EEEECCcc-HHHHHHHHhcc-------------------c
Confidence 34789999999999875 44678889999998775444 33333322 11111111000 0
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhH
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHE 291 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~ 291 (372)
++.. .. ..+.+.++...+.++++++||++++...+..
T Consensus 181 ~~~~-----------~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 217 (230)
T PRK07580 181 FPGP-----------SR--TTRIYPHREKGIRRALAAAGFKVVRTERISS 217 (230)
T ss_pred cCCc-----------cC--CCCccccCHHHHHHHHHHCCCceEeeeeccc
Confidence 0000 00 0011356778899999999999999875553
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=118.23 Aligned_cols=120 Identities=21% Similarity=0.227 Sum_probs=89.7
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
+.....++++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++... .++. +++++++|+.+.
T Consensus 37 l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~--------~~l~-~i~~~~~d~~~~ 107 (187)
T PRK00107 37 LAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE--------LGLK-NVTVVHGRAEEF 107 (187)
T ss_pred HHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------cCCC-CEEEEeccHhhC
Confidence 333334556899999999999988887753 456899999999999999998874 2333 499999999775
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC-hHHHHHHHhh
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-ANVIIKKLRE 218 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~-~~~~~~~l~~ 218 (372)
+. .++||+|++... .++..+++.++++|||||.+++..+. ....+..+..
T Consensus 108 ~~------~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~ 158 (187)
T PRK00107 108 GQ------EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPK 158 (187)
T ss_pred CC------CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHH
Confidence 42 468999998642 24568999999999999998876543 3333443333
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-15 Score=125.47 Aligned_cols=187 Identities=17% Similarity=0.221 Sum_probs=128.1
Q ss_pred CCCCCCCccccchhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHH
Q 017369 22 QNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101 (372)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~ 101 (372)
.+......|++. .||..|+.++........ -..-..+..++......+-.++||+|||||.....
T Consensus 78 ~p~~pP~aYVe~-----LFD~~Ae~Fd~~LVdkL~----------Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~ 142 (287)
T COG4976 78 TPEKPPSAYVET-----LFDQYAERFDHILVDKLG----------YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEA 142 (287)
T ss_pred CCCCCchHHHHH-----HHHHHHHHHHHHHHHHhc----------CccHHHHHHHHHhccCCccceeeecccCcCcccHh
Confidence 334444566666 999999999865443322 01223455566665555668999999999987776
Q ss_pred HHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCC
Q 017369 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST 181 (372)
Q Consensus 102 l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~ 181 (372)
+.. ...+++|+|||++|++.|.++--- -.+.++|+..+. ... .+.+||+|++.-++.|+
T Consensus 143 lR~-~a~~ltGvDiS~nMl~kA~eKg~Y--------------D~L~~Aea~~Fl--~~~-~~er~DLi~AaDVl~Yl--- 201 (287)
T COG4976 143 LRD-MADRLTGVDISENMLAKAHEKGLY--------------DTLYVAEAVLFL--EDL-TQERFDLIVAADVLPYL--- 201 (287)
T ss_pred HHH-HHhhccCCchhHHHHHHHHhccch--------------HHHHHHHHHHHh--hhc-cCCcccchhhhhHHHhh---
Confidence 643 455899999999999999876421 123445543211 111 45789999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEeccccc
Q 017369 182 EARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVD 261 (372)
Q Consensus 182 ~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~ 261 (372)
..+..++--+...|+|||.|.+++-+... +| .|.+..+.
T Consensus 202 -G~Le~~~~~aa~~L~~gGlfaFSvE~l~~------------------------------------~~---~f~l~ps~- 240 (287)
T COG4976 202 -GALEGLFAGAAGLLAPGGLFAFSVETLPD------------------------------------DG---GFVLGPSQ- 240 (287)
T ss_pred -cchhhHHHHHHHhcCCCceEEEEecccCC------------------------------------CC---Ceecchhh-
Confidence 77899999999999999999988743311 00 01111111
Q ss_pred CceeeeehHHHHHHHHHcCcEEEEec
Q 017369 262 CPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 262 ~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.|-.+.+.++.+++..||++|...
T Consensus 241 --RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 241 --RYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred --hhccchHHHHHHHHhcCceEEEee
Confidence 156677788999999999999875
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-14 Score=128.06 Aligned_cols=102 Identities=20% Similarity=0.355 Sum_probs=82.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC----CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..+..+|||+|||+|.++..++... ...++|+|+|+.|++.|+++.. ++.+.++|+.++++
T Consensus 83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~--------------~~~~~~~d~~~lp~- 147 (272)
T PRK11088 83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP--------------QVTFCVASSHRLPF- 147 (272)
T ss_pred CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC--------------CCeEEEeecccCCC-
Confidence 3456789999999999888876542 2369999999999999987654 47889999998887
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHH
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 213 (372)
++++||+|++.++- ..++++.++|||||+|++.+|....+.
T Consensus 148 ----~~~sfD~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~ 188 (272)
T PRK11088 148 ----ADQSLDAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLF 188 (272)
T ss_pred ----cCCceeEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchH
Confidence 67899999986542 235789999999999999998876543
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=120.36 Aligned_cols=130 Identities=19% Similarity=0.211 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc---ccccCCCcCe
Q 017369 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH---QRRKKFSFPA 144 (372)
Q Consensus 68 ~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~~~~~~~~ 144 (372)
..+..+...+..+...++.+|||+|||.|.++..++..+. .|+|+|+|+.+++.+........... ....-...++
T Consensus 21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v 99 (218)
T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI 99 (218)
T ss_pred CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence 3445555555544556778999999999999999987655 89999999999998754221000000 0000013468
Q ss_pred EEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 145 ~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
++.++|+.+++.. ..+.||.|+-..+++++ +.+....++..+.++|+|||.+++
T Consensus 100 ~~~~~D~~~l~~~----~~~~fd~v~D~~~~~~l--~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 100 TIYCGDFFALTAA----DLADVDAVYDRAALIAL--PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEECcccCCCcc----cCCCeeEEEehHhHhhC--CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999887531 12589999999888887 677889999999999999997443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=119.42 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=104.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-c-cccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-V-HLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~-~~~~~~ 160 (372)
+++.+|||+|||+|.++..+.......++|+|+|+++++.|+++ ++.++++|+.+ + ++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----------------~~~~~~~d~~~~l~~~---- 71 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----------------GVNVIQGDLDEGLEAF---- 71 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----------------CCeEEEEEhhhccccc----
Confidence 57789999999999998887665555789999999999988642 25678888764 2 23
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhc
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
++++||+|+++.++||+ .++..+++++.+.+ |.+++++|+.........-..+ ..... ..
T Consensus 72 -~~~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~~~~~----~~~~~---~~----- 131 (194)
T TIGR02081 72 -PDKSFDYVILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYWRVRWSILTK----GRMPV---TG----- 131 (194)
T ss_pred -CCCCcCEEEEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHHHHHHHHHhC----Ccccc---CC-----
Confidence 46789999999999998 56778888887765 4567788876443221111000 00000 00
Q ss_pred ccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
.++ |.+.... +..+.+.+++.++++++||++++...+.
T Consensus 132 ~~~--------~~~~~~~----~~~~~s~~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 132 ELP--------YDWYNTP----NIHFCTIADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred CCC--------ccccCCC----CcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence 000 1110000 1136788999999999999999887443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-14 Score=122.20 Aligned_cols=118 Identities=20% Similarity=0.273 Sum_probs=90.1
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC-cccc--ccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH--LDK 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~--~~~ 158 (372)
.++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++... .++ .++.++++|+ ..++ +
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~--------~~~-~~v~~~~~d~~~~l~~~~-- 107 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE--------EGL-TNLRLLCGDAVEVLLDMF-- 107 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH--------cCC-CCEEEEecCHHHHHHHHc--
Confidence 46789999999999999988765 345799999999999999988763 222 4689999998 5544 3
Q ss_pred ccCCCCCeeEEEecccccccCC----CHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 159 VLADDAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~----~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
++++||+|++.+...+... .......+++++.++|||||.|++.+++......
T Consensus 108 ---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~ 164 (202)
T PRK00121 108 ---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEY 164 (202)
T ss_pred ---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence 5678999999876543210 0011467899999999999999999887765433
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=119.95 Aligned_cols=121 Identities=20% Similarity=0.319 Sum_probs=92.2
Q ss_pred HHHHHHHHHHh-CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 71 NWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 71 ~~~k~~l~~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
.|+...+.... ...+.+|||+|||+|..+..++... ..++|+|+++.+++.++++.... + ..++.+.++
T Consensus 31 ~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~--------~-~~~~~~~~~ 100 (224)
T TIGR01983 31 DYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKD--------P-LLKIEYRCT 100 (224)
T ss_pred HHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHc--------C-CCceEEEeC
Confidence 45554443321 2347899999999999888877654 46999999999999999887531 1 115788888
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
|+.+.+.. ..++||+|++..+++|. .++..+++++.++|+|||.+++++++.
T Consensus 101 d~~~~~~~----~~~~~D~i~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 101 SVEDLAEK----GAKSFDVVTCMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred CHHHhhcC----CCCCccEEEehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 88765531 23789999999999987 567789999999999999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=108.59 Aligned_cols=110 Identities=20% Similarity=0.153 Sum_probs=85.2
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++..+...++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++.... + ..++.++.+|+...
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~-~~~~~~~~~~~~~~ 81 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF--------G-VSNIVIVEGDAPEA 81 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh--------C-CCceEEEecccccc
Confidence 4444556678899999999999999998753 468999999999999999887632 1 12578888887642
Q ss_pred -ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 -HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 -~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+. ..++||+|++..... ....+++.+.+.|+|||.+++++
T Consensus 82 ~~~-----~~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 82 LED-----SLPEPDRVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Chh-----hcCCCCEEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 21 236899999876543 34589999999999999999876
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=120.54 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=82.1
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.+.+.++.+|||+|||+|.++..++..- .+.|+|+|+++.|++.+.++... ..++.++.+|+.+....
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----------~~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----------RKNIIPILADARKPERY 135 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----------cCCcEEEECCCCCcchh
Confidence 3566789999999999999998887653 45899999999999988776542 23688899998652100
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.. ..++||+|++.... ......+++++.++|||||.++++++.
T Consensus 136 ~~--l~~~~D~i~~d~~~------p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 136 AH--VVEKVDVIYQDVAQ------PNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred hh--ccccCCEEEECCCC------hhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 01 13569999864321 223456789999999999999998653
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-13 Score=113.99 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=79.5
Q ss_pred CCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|..+..++... .++|+|+|+|+.|++.++++.+. .++ .+++++++|+.+.. .
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~--------~~~-~~i~~i~~d~~~~~------~ 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE--------LGL-NNVEIVNGRAEDFQ------H 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------hCC-CCeEEEecchhhcc------c
Confidence 47899999999999888876543 45799999999999999888763 222 25899999998753 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++||+|++.. +++ ...+++.+.++|+|||.+++..
T Consensus 107 ~~~fD~I~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 EEQFDVITSRA-LAS-------LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred cCCccEEEehh-hhC-------HHHHHHHHHHhcCCCCEEEEEc
Confidence 57899999865 432 4567888999999999988764
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=121.07 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=105.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHH--HHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR--TRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.-.|.+|||||||+|.++..++..+...|+|+|.++...-+.+ +++.+ ....+.++..-+++++
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg----------~~~~~~~lplgvE~Lp---- 178 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG----------QDPPVFELPLGVEDLP---- 178 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC----------CCccEEEcCcchhhcc----
Confidence 3478999999999999999999999989999999997766532 23321 0112333323444444
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFAD 239 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~ 239 (372)
..+.||+|+|..+|.|. .++...|.+++..|+|||.+++.+.-.+ |..-..+ +
T Consensus 179 --~~~~FDtVF~MGVLYHr----r~Pl~~L~~Lk~~L~~gGeLvLETlvi~--------------g~~~~~L-~------ 231 (315)
T PF08003_consen 179 --NLGAFDTVFSMGVLYHR----RSPLDHLKQLKDSLRPGGELVLETLVID--------------GDENTVL-V------ 231 (315)
T ss_pred --ccCCcCEEEEeeehhcc----CCHHHHHHHHHHhhCCCCEEEEEEeeec--------------CCCceEE-c------
Confidence 24789999999999997 7788999999999999999998762110 0000000 0
Q ss_pred cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 240 KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 240 ~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
|. ..+. .+. --.++.+...+...++++||+-|+..+..
T Consensus 232 ---P~-~rYa-----~m~----nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 232 ---PE-DRYA-----KMR----NVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred ---cC-Cccc-----CCC----ceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 11 0010 000 11257888999999999999888876544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=127.26 Aligned_cols=113 Identities=15% Similarity=0.040 Sum_probs=90.2
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++......++.+|||+|||+|.++..+++.. ..+++++|. +.+++.|+++... .++..+++++.+|+.+.
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~gl~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE--------KGVADRMRGIAVDIYKE 211 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh--------CCccceEEEEecCccCC
Confidence 3334445677899999999999999988764 457999997 7899999988764 34456799999999865
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++ + .+|+|++..++|+. +.+....+|++++++|+|||++++..
T Consensus 212 ~~-----~--~~D~v~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 212 SY-----P--EADAVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CC-----C--CCCEEEeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54 2 36999999988875 44567889999999999999987653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=123.01 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=89.3
Q ss_pred CCCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.++.+|+|||||.|..+..++. ...++++|+|+++++++.|++.+.. ..++..+++|.++|+.+...
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-------~~gL~~rV~F~~~Da~~~~~--- 191 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-------DPDLSKRMFFHTADVMDVTE--- 191 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-------ccCccCCcEEEECchhhccc---
Confidence 3778999999998866555443 2456899999999999999998852 13456689999999987532
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..+.||+|++. +++|+ +.++..++++++.+.|+|||++++....+
T Consensus 192 --~l~~FDlVF~~-ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 192 --SLKEYDVVFLA-ALVGM--DKEEKVKVIEHLGKHMAPGALLMLRSAHG 236 (296)
T ss_pred --ccCCcCEEEEe-ccccc--ccccHHHHHHHHHHhcCCCcEEEEecccc
Confidence 24689999999 88886 45678999999999999999999876433
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-13 Score=117.74 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
...++..+.+.++.+|||+|||+|..+..++... .++|+|+|+++++++.|++++.. .++..+++++.+|
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~--------~~~~~~v~~~~~d 132 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER--------LGYWGVVEVYHGD 132 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCCcEEEEECC
Confidence 3444455556788999999999999887776542 46899999999999999988763 2333468999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.+... ...+||+|++..+++++ ..++.++|+|||++++.+.
T Consensus 133 ~~~~~~-----~~~~fD~Ii~~~~~~~~----------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 133 GKRGLE-----KHAPFDAIIVTAAASTI----------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cccCCc-----cCCCccEEEEccCcchh----------hHHHHHhcCcCcEEEEEEc
Confidence 876432 34689999999887754 1467899999999988653
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=111.21 Aligned_cols=130 Identities=24% Similarity=0.304 Sum_probs=93.5
Q ss_pred hhhhHHHHHHHHHHhCCCCC-EEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 67 KKLNNWIKSVLVQLYARRGD-VVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 67 ~~~~~~~k~~l~~~~~~~~~-~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
..+..|++.......+.+.+ +|||+|||+|.++..++..+.. .++|+|.|+.+++.|+..++. .++...+
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~--------~~~~n~I 120 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER--------DGFSNEI 120 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh--------cCCCcce
Confidence 34456665554433344444 9999999999999999886554 499999999999999887763 4556679
Q ss_pred EEEECcCcccccccccCCCCCeeEEEeccccccc---C-CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS---W-STEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 145 ~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~-~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.|.+.|+.+..+ ..+.||+|+--.++--+ . .....+...+..+.+.|+|||+|+++.-|.
T Consensus 121 ~f~q~DI~~~~~-----~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 121 RFQQLDITDPDF-----LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eEEEeeccCCcc-----cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 999999988655 45677777665433221 0 011233567888999999999999987654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=132.35 Aligned_cols=106 Identities=18% Similarity=0.306 Sum_probs=86.7
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--ccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--VHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~ 158 (372)
...++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.+++... ...++.++++|+.. +++
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~-----------~~~~i~~~~~d~~~~~~~~-- 99 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING-----------HYKNVKFMCADVTSPDLNI-- 99 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc-----------cCCceEEEEecccccccCC--
Confidence 3446789999999999999998765 4589999999999998765432 13468899999864 344
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
++++||+|+|.++++|+ +.++...+++++.++|||||++++.
T Consensus 100 ---~~~~fD~I~~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 100 ---SDGSVDLIFSNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ---CCCCEEEEehhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 56799999999999998 4456789999999999999999875
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=113.45 Aligned_cols=177 Identities=16% Similarity=0.245 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhCCC-C--CEEEEecCCccccHHHHHHcCCC---EEEEEeCChHHHHHHHHHhcCCCcccccccCCCc
Q 017369 69 LNNWIKSVLVQLYARR-G--DVVLDLACGKGGDLIKWDKAKIG---YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~-~--~~VLDlGcG~G~~~~~l~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 142 (372)
-++|+..-...+.... . .+|||+|||.|.....+++.... .++++|.|+.+++..+++.... ..
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----------e~ 122 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----------ES 122 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----------hh
Confidence 4567666555554332 2 27999999999999998875333 6999999999999988865421 23
Q ss_pred CeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCC
Q 017369 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGL 222 (372)
Q Consensus 143 ~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~ 222 (372)
++...+.|+....+.... ..+++|+|++.|+|.-+ .++....++.+++++|||||.+++.-.....+. .
T Consensus 123 ~~~afv~Dlt~~~~~~~~-~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla-q------- 191 (264)
T KOG2361|consen 123 RVEAFVWDLTSPSLKEPP-EEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-Q------- 191 (264)
T ss_pred hhcccceeccchhccCCC-CcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-H-------
Confidence 456666677654433222 56899999999999876 668899999999999999999988754332211 1
Q ss_pred ccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEe
Q 017369 223 AIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFV 286 (372)
Q Consensus 223 ~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~ 286 (372)
++|..+ --....|+.+.. +.+-|+++.+++.+++.++||..++.
T Consensus 192 --------lRF~~~-----------~~i~~nfYVRgD-GT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 192 --------LRFKKG-----------QCISENFYVRGD-GTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred --------HhccCC-----------ceeecceEEccC-CceeeeccHHHHHHHHHhcccchhcc
Confidence 111110 001122333322 23447899999999999999977654
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=111.86 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=82.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++.... ..++.++++|+.+..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~------- 79 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN----------NVGLDVVMTDLFKGV------- 79 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc----------CCceEEEEccccccc-------
Confidence 4567999999999999998887655 8999999999999999987631 225788899986532
Q ss_pred CCCeeEEEecccccccCCC-----------------HHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWST-----------------EARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~-----------------~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++||+|+++..+++.-.. ..-...+++++.++|+|||.+++..
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 3589999998776544111 1125678999999999999987765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-13 Score=108.24 Aligned_cols=113 Identities=26% Similarity=0.369 Sum_probs=86.4
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
|.+|||+|||+|.++..+++....+++|+|+++..++.|+.++.. .++..+++++++|+.+.. ... +++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~--------~~~~~~~~~~~~D~~~~~--~~~-~~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR--------NGLDDRVEVIVGDARDLP--EPL-PDG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH--------CTTTTTEEEEESHHHHHH--HTC-TTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH--------ccCCceEEEEECchhhch--hhc-cCc
Confidence 468999999999999998887756899999999999999998874 334567999999998765 011 568
Q ss_pred CeeEEEecccccccCCCH----HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 165 PFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~----~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+||+|+++--........ .....+++.+.++|+|||.+++.+|+
T Consensus 70 ~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 70 KFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999987554321111 13578899999999999999988763
|
... |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=111.91 Aligned_cols=106 Identities=16% Similarity=0.078 Sum_probs=82.2
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
..+.+.++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++... .++ .+++++++|+.. .+
T Consensus 25 ~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~--------~~~-~~i~~~~~d~~~-~~ 94 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR--------FGC-GNIDIIPGEAPI-EL 94 (187)
T ss_pred HhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------hCC-CCeEEEecCchh-hc
Confidence 34455688999999999999998887753 45899999999999999988753 122 358888888742 22
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++||+|++.....+ ...+++.+.+.|+|||++++..
T Consensus 95 ------~~~~D~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 95 ------PGKADAIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ------CcCCCEEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEE
Confidence 357999998765543 3568899999999999998764
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=111.77 Aligned_cols=109 Identities=21% Similarity=0.325 Sum_probs=84.0
Q ss_pred CCCEEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|..+..++..... +|+++|+++.+++.|++++.. .++.. ++++..|+.+.. +
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~--------n~~~~-v~~~~~d~~~~~------~ 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER--------NGLEN-VEVVQSDLFEAL------P 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH--------TTCTT-EEEEESSTTTTC------C
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh--------cCccc-cccccccccccc------c
Confidence 7789999999999999988876554 699999999999999998874 23333 899999987532 4
Q ss_pred CCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+++||+|+++--++.... ...-...+++.+.+.|+|||.+++...
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 589999999977654311 113468899999999999999876553
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-13 Score=115.30 Aligned_cols=119 Identities=18% Similarity=0.299 Sum_probs=88.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+...+|||||||+|.++..++... ...|+|+|+++.+++.|+++... .++ .++.++++|+.+++. ...
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~--------~~l-~ni~~i~~d~~~~~~--~~~ 83 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK--------LGL-KNLHVLCGDANELLD--KFF 83 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--------hCC-CCEEEEccCHHHHHH--hhC
Confidence 456799999999999999888754 45799999999999999988763 223 279999999976431 111
Q ss_pred CCCCeeEEEecccccccCCC----HHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 162 DDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
+++.+|.|++++...|.-.. .-....++++++++|||||.|++.+.+....
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~ 138 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLF 138 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 45689999988765542000 0001478999999999999999988776543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=120.50 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=108.5
Q ss_pred hhHHHHHHHHhhccccccch-hhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEE
Q 017369 36 TKVFARKVADHYSRRTNQTL-EEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGI 113 (372)
Q Consensus 36 ~~~~~~~va~~Y~~~~~~~~-~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gv 113 (372)
....|+..+++|........ .......... ..+..-...++.......+..+||||||+|.++..++... ...++|+
T Consensus 74 ~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGI 152 (390)
T PRK14121 74 LKKALKIFSELFCADIISHNLAENSKKLSLK-KPYILDIDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGI 152 (390)
T ss_pred HHHHHHHHHHHhhcccccccccccccccccc-ccccCCHHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEE
Confidence 34688899999963222211 1111111100 0010111223344445567799999999999999998764 3479999
Q ss_pred eCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHH----HHHHH
Q 017369 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR----ARRAL 189 (372)
Q Consensus 114 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~----~~~~l 189 (372)
|+++.+++.|.+++.. .++ .++.++++|+..+. ..+ +++++|.|++.+...|. ...+ ...++
T Consensus 153 EI~~~~i~~a~~ka~~--------~gL-~NV~~i~~DA~~ll--~~~-~~~s~D~I~lnFPdPW~--KkrHRRlv~~~fL 218 (390)
T PRK14121 153 EIHTPSIEQVLKQIEL--------LNL-KNLLIINYDARLLL--ELL-PSNSVEKIFVHFPVPWD--KKPHRRVISEDFL 218 (390)
T ss_pred ECCHHHHHHHHHHHHH--------cCC-CcEEEEECCHHHhh--hhC-CCCceeEEEEeCCCCcc--ccchhhccHHHHH
Confidence 9999999999988764 222 36999999986542 111 67899999988766542 1111 25799
Q ss_pred HHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 190 ANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 190 ~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
+.++++|+|||.+.+.+-+.+.....
T Consensus 219 ~e~~RvLkpGG~l~l~TD~~~y~~~~ 244 (390)
T PRK14121 219 NEALRVLKPGGTLELRTDSELYFEFS 244 (390)
T ss_pred HHHHHHcCCCcEEEEEEECHHHHHHH
Confidence 99999999999999988776654433
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=113.67 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=84.8
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
...++..+.+.++.+|||+|||+|..+..++.. ..++|+++|+++++++.|++++... + ..++.++++|
T Consensus 65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~--------g-~~~v~~~~gd 135 (212)
T PRK13942 65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL--------G-YDNVEVIVGD 135 (212)
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------C-CCCeEEEECC
Confidence 334555556788999999999999988777664 2358999999999999999988642 1 2368999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+..... +.++||+|++..+...+ ...+.+.|||||.+++..
T Consensus 136 ~~~~~~-----~~~~fD~I~~~~~~~~~----------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 136 GTLGYE-----ENAPYDRIYVTAAGPDI----------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccCCC-----cCCCcCEEEECCCcccc----------hHHHHHhhCCCcEEEEEE
Confidence 876443 45789999998776543 245677899999998865
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.4e-12 Score=110.26 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=88.8
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
..+.+.++.+|||+|||+|.++..++.. ..++|+++|+++.+++.|+++... .++..++.++++|+.+..
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~--------~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK--------FGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------hCCCCCeEEEEechhhhH
Confidence 4456678999999999999998887653 345899999999999999988763 232346888999886532
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
.. ..+.||+|++.... .....+++.+.++|+|||++++..+..+.+
T Consensus 106 ~~----~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 151 (198)
T PRK00377 106 FT----INEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETV 151 (198)
T ss_pred hh----cCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence 10 23689999985432 346689999999999999999877766443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=118.30 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=79.4
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH- 155 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~- 155 (372)
.+.+.++.+|||+|||+|.++..++..- .+.|+++|+|+.|++........ ..++.++.+|+....
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----------r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----------RPNIVPIIEDARYPQK 195 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----------cCCCEEEECCccChhh
Confidence 3457899999999999999999988752 46899999999766554444321 136888999986421
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+. . ..+.||+|++..+. .++...++.++.+.|||||.|++.+
T Consensus 196 y~-~--~~~~vDvV~~Dva~------pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 196 YR-M--LVPMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred hh-c--ccCCCCEEEEeCCC------cchHHHHHHHHHHhccCCCEEEEEE
Confidence 11 0 23579999988752 2456677789999999999999864
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=113.56 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=85.3
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..++..+.+.++.+|||+|||+|..+..++... .++|+++|+++.+++.|++++... ++ .+++++++|
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--------g~-~~v~~~~~d 136 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--------GL-DNVIVIVGD 136 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC--------CC-CCeEEEECC
Confidence 3445555567889999999999999998877653 346999999999999999998742 22 368999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.+... ...+||+|++..+..++ ...+.+.|+|||++++.+.
T Consensus 137 ~~~~~~-----~~~~fD~Ii~~~~~~~~----------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 137 GTQGWE-----PLAPYDRIYVTAAGPKI----------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cccCCc-----ccCCCCEEEEcCCcccc----------cHHHHHhcCcCcEEEEEEc
Confidence 876432 34689999988766543 3457889999999988653
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=117.57 Aligned_cols=106 Identities=21% Similarity=0.170 Sum_probs=82.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++... +++...+.+..++.. ..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~--------n~~~~~~~~~~~~~~--~~----- 221 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL--------NQVSDRLQVKLIYLE--QP----- 221 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH--------cCCCcceEEEecccc--cc-----
Confidence 457899999999999988888776667899999999999999998763 333445666666532 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..++||+|+++... .....++.++.++|||||+++++....
T Consensus 222 ~~~~fDlVvan~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 222 IEGKADVIVANILA-------EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred cCCCceEEEEecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 34689999997643 345678999999999999999876543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.2e-12 Score=113.59 Aligned_cols=97 Identities=23% Similarity=0.286 Sum_probs=72.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..+...+...|+|+|+|+.+++.|+++... .++...+.+..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~--------~~~~~~~~~~~------------- 175 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL--------NGVELNVYLPQ------------- 175 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH--------cCCCceEEEcc-------------
Confidence 457899999999999888877766666799999999999999998763 12211122111
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.+||+|+++... .....++.++.++|||||+++++.
T Consensus 176 ~~~~fD~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 176 GDLKADVIVANILA-------NPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred CCCCcCEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 12279999987543 335678999999999999999874
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-12 Score=108.14 Aligned_cols=124 Identities=20% Similarity=0.291 Sum_probs=91.7
Q ss_pred HHHHHHHHhCCC--CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARR--GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~--~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
..+.+..+.++. ..-|||||||+|.....+...+ ...+|+|||+.|++.|.++-- .-.++.+|
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~--------------egdlil~D 101 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVEREL--------------EGDLILCD 101 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhh--------------hcCeeeee
Confidence 444555555555 6789999999997766665444 468999999999999997432 13467778
Q ss_pred Ccc-cccccccCCCCCeeEEEecccccccCC-------CHHHHHHHHHHHHHhcCCCcEEEEEe-CChHHHHHHH
Q 017369 151 CYE-VHLDKVLADDAPFDICSCQFAMHYSWS-------TEARARRALANVSALLRPGGTFIGTM-PDANVIIKKL 216 (372)
Q Consensus 151 ~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~i~~~LkpgG~li~~~-~~~~~~~~~l 216 (372)
+.+ +|+ .+++||-|++..+++|++. +...+..|+..++.+|++|+..++.. |..+.-++.+
T Consensus 102 MG~Glpf-----rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i 171 (270)
T KOG1541|consen 102 MGEGLPF-----RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI 171 (270)
T ss_pred cCCCCCC-----CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence 753 666 7899999999998888743 33456778999999999999999887 4444444443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.2e-13 Score=114.55 Aligned_cols=232 Identities=16% Similarity=0.256 Sum_probs=154.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
....++|||||-|.....+...+..+++-+|.|-.|++.++..-.. ...+...++|-+.+++ .+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp-----------~i~~~~~v~DEE~Ldf-----~e 135 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP-----------SIETSYFVGDEEFLDF-----KE 135 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC-----------ceEEEEEecchhcccc-----cc
Confidence 4568999999999999999888888999999999999998764321 2346678889888888 78
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHH---hhhcCCccCCeEEEEEeCchhhhc
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL---REVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l---~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
+++|+|+++.++||. .++...+..+...|||+|.|+.++...+.+.+.- +-+.-...|...
T Consensus 136 ns~DLiisSlslHW~----NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiS------------ 199 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWT----NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGIS------------ 199 (325)
T ss_pred cchhhhhhhhhhhhh----ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCC------------
Confidence 999999999999998 7788999999999999999998887766543321 111000111000
Q ss_pred ccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHH---HHhccCCCCCC
Q 017369 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELM---RRLGALGDGNQ 317 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~ 317 (372)
|.-.| +.....+-.|+..+||..+... -.++.-. .|...+|+ +-||..++.+.
T Consensus 200 --phiSP------------------f~qvrDiG~LL~rAGF~m~tvD-tDEi~v~---Yp~mfeLm~dLq~MgEsn~~~~ 255 (325)
T KOG2940|consen 200 --PHISP------------------FTQVRDIGNLLTRAGFSMLTVD-TDEIVVG---YPRMFELMEDLQGMGESNAALN 255 (325)
T ss_pred --CCcCh------------------hhhhhhhhhHHhhcCcccceec-ccceeec---CchHHHHHHHHHhhcccchhhc
Confidence 10001 3334556788999999877654 2333222 24444554 44555444444
Q ss_pred CCCCCCHhHHH-HHHhhcEEE----------EE---ecCCCCCCccCCCCCCCceeecccceeecccC
Q 017369 318 DQSTLSADEWE-VAYLYLAFV----------LR---KRGQPDGTRVSGKRDKGKMYISKEDIMYVHSD 371 (372)
Q Consensus 318 ~~~~ls~~e~e-~~~ly~~~v----------f~---K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (372)
....|+.+-.- +.++|.-.. || -.+-...++.+...-+|+..+|..|+=+|.++
T Consensus 256 Rn~~l~Ret~vAaaAiY~smya~e~~~iPATfqiiy~iGWk~~~s~pq~~~RGs~tVS~~dlgki~~~ 323 (325)
T KOG2940|consen 256 RNAILNRETMVAAAAIYQSMYATEDGTIPATFQIIYMIGWKPHPSQPQAAERGSATVSFKDLGKIFEG 323 (325)
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCCCcceeEEEEEEEccCcCCCCCChhhcCCceEeHHHHHHhhcC
Confidence 44556655433 333332211 11 12333457888889999999999999887664
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=118.25 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=86.8
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
..+....+.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++...+. ....+++++..|+....
T Consensus 222 ~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~------~~~~~v~~~~~D~l~~~- 294 (378)
T PRK15001 222 QHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP------EALDRCEFMINNALSGV- 294 (378)
T ss_pred HhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc------ccCceEEEEEccccccC-
Confidence 33333345699999999999999887754 45899999999999999998763210 00136888888885421
Q ss_pred ccccCCCCCeeEEEecccccccC-CCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 157 DKVLADDAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+..+||+|+|+-.+|... .+.....++++.+.++|+|||.+++...
T Consensus 295 -----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 -----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred -----CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 346899999987766431 1334567899999999999999888753
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=106.03 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=100.2
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
...+.||.|+|-|+.+..++.....+|..+|+.+..++.|++.... .......+++..+.+... +.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~---------~~~~v~~~~~~gLQ~f~P-----~~ 120 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK---------DNPRVGEFYCVGLQDFTP-----EE 120 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC---------GGCCEEEEEES-GGG---------T
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc---------cCCCcceEEecCHhhccC-----CC
Confidence 3578999999999999988777777899999999999999987652 112235677777765442 35
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFK 243 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~ 243 (372)
++||+|++++++.|+ +.+++..+|+++...|+|+|.+++-..... .+ . ..|+.+
T Consensus 121 ~~YDlIW~QW~lghL--TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~-------------~~--~--~~~D~~------- 174 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHL--TDEDLVAFLKRCKQALKPNGVIVVKENVSS-------------SG--F--DEFDEE------- 174 (218)
T ss_dssp T-EEEEEEES-GGGS---HHHHHHHHHHHHHHEEEEEEEEEEEEEES-------------SS--E--EEEETT-------
T ss_pred CcEeEEEehHhhccC--CHHHHHHHHHHHHHhCcCCcEEEEEecCCC-------------CC--C--cccCCc-------
Confidence 799999999999999 889999999999999999999887531110 00 0 011111
Q ss_pred CCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 244 SSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 244 ~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
..++ -.+.+.++++++++|+++|...
T Consensus 175 -------------DsSv-----TRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 175 -------------DSSV-----TRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp -------------TTEE-----EEEHHHHHHHHHHCT-EEEEEE
T ss_pred -------------cCee-----ecCHHHHHHHHHHcCCEEEEec
Confidence 0122 5567889999999999999865
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=110.86 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=89.4
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
.+......++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|+++.... ..++.++++|+.+.
T Consensus 28 ~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~----------~~~~~~~~~d~~~~- 96 (223)
T PRK14967 28 ALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA----------GVDVDVRRGDWARA- 96 (223)
T ss_pred HHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh----------CCeeEEEECchhhh-
Confidence 3444445678899999999999988887765558999999999999999887531 22578888888652
Q ss_pred cccccCCCCCeeEEEecccccccC-----------------CCHHHHHHHHHHHHHhcCCCcEEEEEeCC---hHHHHHH
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSW-----------------STEARARRALANVSALLRPGGTFIGTMPD---ANVIIKK 215 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~-----------------~~~~~~~~~l~~i~~~LkpgG~li~~~~~---~~~~~~~ 215 (372)
+ ++++||+|+++....... +.......+++++.++|||||.+++.... ...++..
T Consensus 97 ~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~ 171 (223)
T PRK14967 97 V-----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTR 171 (223)
T ss_pred c-----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHH
Confidence 2 457899999974322110 01123567889999999999998875443 3444444
Q ss_pred Hh
Q 017369 216 LR 217 (372)
Q Consensus 216 l~ 217 (372)
++
T Consensus 172 l~ 173 (223)
T PRK14967 172 LS 173 (223)
T ss_pred HH
Confidence 43
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-11 Score=105.88 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=81.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCc-CeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|..+..++.. ..+++|+|+|+.+++.++++.... ++.. .+.++++|+.+. +
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~d~~~~-~----- 86 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLN--------NIRNNGVEVIRSDLFEP-F----- 86 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHc--------CCCCcceEEEecccccc-c-----
Confidence 57789999999999999988876 568999999999999998887531 1121 278888887653 2
Q ss_pred CCCCeeEEEecccccc-----------------cCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHY-----------------SWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~-----------------~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....||+|+++..+.. ..........+++++.++|||||.+++.++
T Consensus 87 ~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 87 RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 3458999998654321 011123457789999999999999887654
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=109.61 Aligned_cols=135 Identities=11% Similarity=0.069 Sum_probs=98.1
Q ss_pred hhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccc---cccCCCcC
Q 017369 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ---RRKKFSFP 143 (372)
Q Consensus 67 ~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~---~~~~~~~~ 143 (372)
...+.++...+......++.+||+.|||.|.++..++..+. .|+|+|+|+.+++.+.+.....-.... ....-...
T Consensus 26 ~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 26 ESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred CCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 44455565555555556778999999999999999987766 699999999999998764321000000 00001346
Q ss_pred eEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 144 ~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++.++|+.+++.... ..+.||+|+-..+++.+ +.+...+..+.+.++|+|||.+++.+
T Consensus 105 i~~~~gD~f~l~~~~~--~~~~fD~VyDra~~~Al--pp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 105 IEIYVADIFNLPKIAN--NLPVFDIWYDRGAYIAL--PNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred eEEEEccCcCCCcccc--ccCCcCeeeeehhHhcC--CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 8999999998753100 23689999999999988 66788999999999999999977554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=109.61 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=78.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc--
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-- 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-- 157 (372)
++++.+|||+|||+|.++..+++.. .+.|+|+|+++ | .. ..++.++++|+.+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~-----------~~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DP-----------IVGVDFLQGDFRDELVLKA 108 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cC-----------CCCcEEEecCCCChHHHHH
Confidence 5788999999999999998887753 35899999988 2 10 12488999999875310
Q ss_pred --cccCCCCCeeEEEecccccccCCCHHH-------HHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 158 --KVLADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
... ..++||+|++..+.++.-....+ ...+|+++.++|||||.|++.+...+.
T Consensus 109 i~~~~-~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 109 LLERV-GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred HHHHh-CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 001 45789999998877653111011 256899999999999999997765443
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.3e-12 Score=118.93 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=94.2
Q ss_pred HHHHHHHHH-HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 71 NWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 71 ~~~k~~l~~-~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
.-+...+.. ...+++.+|||+|||+|.++...+.. ...++|+|+++.|++.|+.++... ++. ++.+.++
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~--------g~~-~i~~~~~ 237 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHY--------GIE-DFFVKRG 237 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHh--------CCC-CCeEEec
Confidence 333333333 35678899999999999998887654 458999999999999999987642 223 3788999
Q ss_pred cCcccccccccCCCCCeeEEEecccccc-----cCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
|+.++++ .+++||+|+++.-..- ......-...+++++.++|+|||++++.+|+...+..
T Consensus 238 D~~~l~~-----~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~ 302 (329)
T TIGR01177 238 DATKLPL-----SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLES 302 (329)
T ss_pred chhcCCc-----ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHH
Confidence 9998876 5679999999632110 0001133578999999999999999988887644443
|
This family is found exclusively in the Archaea. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=111.81 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++... .++..++.++++|+.+. +
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~--------~~~~~~i~~~~~D~~~~-~----- 185 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER--------HGLEDRVTLIQSDLFAA-L----- 185 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECchhhc-c-----
Confidence 345799999999999999988753 45899999999999999998864 33345789999998642 2
Q ss_pred CCCCeeEEEeccc------cccc-----CC----------CHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 162 DDAPFDICSCQFA------MHYS-----WS----------TEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 162 ~~~~fD~V~~~~~------l~~~-----~~----------~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
+.++||+|+++-- +.++ .+ .......++..+.+.|+|||++++.+....
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM 255 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 3458999999621 1100 00 112347789999999999999999887543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=115.55 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++.. +++ ...++.+|+...
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~--------n~l--~~~~~~~D~~~~------- 257 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA--------NGL--EGEVFASNVFSD------- 257 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCC--CCEEEEcccccc-------
Confidence 345689999999999998888764 35799999999999999998764 222 346677777541
Q ss_pred CCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|+|+..+|+... +......+++++.+.|||||.+++....
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 2468999999998886432 2456789999999999999999876643
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-12 Score=109.17 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=66.8
Q ss_pred EEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHH
Q 017369 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190 (372)
Q Consensus 111 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~ 190 (372)
+|+|+|++|++.|+++..... .+...+++++++|+.++++ ++++||+|++.+++|++ .+...+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~------~~~~~~i~~~~~d~~~lp~-----~~~~fD~v~~~~~l~~~----~d~~~~l~ 65 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA------RSCYKCIEWIEGDAIDLPF-----DDCEFDAVTMGYGLRNV----VDRLRAMK 65 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc------ccCCCceEEEEechhhCCC-----CCCCeeEEEecchhhcC----CCHHHHHH
Confidence 489999999999987764210 1112468999999999887 67899999999999987 56889999
Q ss_pred HHHHhcCCCcEEEEEe
Q 017369 191 NVSALLRPGGTFIGTM 206 (372)
Q Consensus 191 ~i~~~LkpgG~li~~~ 206 (372)
+++++|||||.+++..
T Consensus 66 ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 66 EMYRVLKPGSRVSILD 81 (160)
T ss_pred HHHHHcCcCeEEEEEE
Confidence 9999999999987654
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=111.91 Aligned_cols=129 Identities=15% Similarity=0.260 Sum_probs=85.9
Q ss_pred HHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCC-EEEEecCCccccHHHHHHcCCCEEEEEeCCh
Q 017369 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGD-VVLDLACGKGGDLIKWDKAKIGYYVGIDIAE 117 (372)
Q Consensus 39 ~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~-~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~ 117 (372)
.++.-+++|........ ..|.+.+... .++. .++|+|||+|..+.-++. ...+|+|+|+|+
T Consensus 4 ~~~~~a~~Y~~ARP~YP--------------tdw~~~ia~~---~~~h~~a~DvG~G~Gqa~~~iae-~~k~VIatD~s~ 65 (261)
T KOG3010|consen 4 LFDKQAADYLNARPSYP--------------TDWFKKIASR---TEGHRLAWDVGTGNGQAARGIAE-HYKEVIATDVSE 65 (261)
T ss_pred cccccHHHHhhcCCCCc--------------HHHHHHHHhh---CCCcceEEEeccCCCcchHHHHH-hhhhheeecCCH
Confidence 45667788875433321 3565555432 2232 899999999966665554 466899999999
Q ss_pred HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcC
Q 017369 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR 197 (372)
Q Consensus 118 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk 197 (372)
.||+.|++..... -......+...++.++. ..+++.|+|+|..++||+ +...+++++.++||
T Consensus 66 ~mL~~a~k~~~~~--------y~~t~~~ms~~~~v~L~-----g~e~SVDlI~~Aqa~HWF-----dle~fy~~~~rvLR 127 (261)
T KOG3010|consen 66 AMLKVAKKHPPVT--------YCHTPSTMSSDEMVDLL-----GGEESVDLITAAQAVHWF-----DLERFYKEAYRVLR 127 (261)
T ss_pred HHHHHhhcCCCcc--------cccCCcccccccccccc-----CCCcceeeehhhhhHHhh-----chHHHHHHHHHHcC
Confidence 9999998765420 00111222222332222 147899999999999997 68899999999998
Q ss_pred CCc-EEE
Q 017369 198 PGG-TFI 203 (372)
Q Consensus 198 pgG-~li 203 (372)
+.| .+.
T Consensus 128 k~Gg~ia 134 (261)
T KOG3010|consen 128 KDGGLIA 134 (261)
T ss_pred CCCCEEE
Confidence 876 544
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-11 Score=108.59 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=81.0
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+.+|||+|||+|..+..++.. +...++|+|+++.+++.|+++... .++ .++.++++|+.+ ++
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~--------~~~-~~~~~~~~d~~~-~~----- 150 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR--------LGL-DNVTFLQSDWFE-PL----- 150 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCC-CeEEEEECchhc-cC-----
Confidence 34569999999999999988875 345899999999999999998763 222 258999999875 33
Q ss_pred CCCCeeEEEeccccc------ccCC----------------CHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMH------YSWS----------------TEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~------~~~~----------------~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.++||+|+++.... .+.. .......+++++.++|+|||.+++..
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 457899999964322 1100 01123578899999999999998765
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=112.43 Aligned_cols=104 Identities=25% Similarity=0.350 Sum_probs=79.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.+++..++.+...++|+|++|.+++.|+.+... +++...+.....+....+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~--------N~v~~~~~~~~~~~~~~~------ 225 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL--------NGVELLVQAKGFLLLEVP------ 225 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH--------cCCchhhhcccccchhhc------
Confidence 458899999999999999999888998999999999999999998874 233321222233332222
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..++||+|+++-.. +-...+...+.+.|||||+++++-
T Consensus 226 ~~~~~DvIVANILA-------~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 226 ENGPFDVIVANILA-------EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ccCcccEEEehhhH-------HHHHHHHHHHHHHcCCCceEEEEe
Confidence 34699999998632 336688899999999999999886
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-11 Score=106.19 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=81.5
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++..+...++.+|||+|||+|..+..++... .+++++|+++.+++.|++++... ++ .++.+.++|+.+..
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~--------~~-~~v~~~~~d~~~~~ 139 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQL--------GL-HNVSVRHGDGWKGW 139 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHC--------CC-CceEEEECCcccCC
Confidence 3344556788999999999999887665543 58999999999999999988642 22 25889999985432
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ..++||+|++..+++++ ...+.+.|+|||.+++.+.
T Consensus 140 ~-----~~~~fD~I~~~~~~~~~----------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 P-----AYAPFDRILVTAAAPEI----------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred C-----cCCCcCEEEEccCchhh----------hHHHHHhcCCCcEEEEEEc
Confidence 1 34789999998776543 3457889999999998775
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-11 Score=106.12 Aligned_cols=131 Identities=23% Similarity=0.288 Sum_probs=94.2
Q ss_pred chhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC-CCcccc--cccCCCc
Q 017369 66 LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG-DADHHQ--RRKKFSF 142 (372)
Q Consensus 66 ~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~--~~~~~~~ 142 (372)
....+.++...+..+...++.+||..|||.|.++..++..+. +|+|+|+|+.+++.|.+.... ...... ....-..
T Consensus 19 ~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 19 QGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp -TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred CCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 445566677777776777888999999999999999887654 899999999999998654321 000000 0001123
Q ss_pred CeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 143 ~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
++++.++|+.+++.. ..++||+|+-..+++-+ +++...+..+.+.++|+|||.++
T Consensus 98 ~i~~~~gDfF~l~~~----~~g~fD~iyDr~~l~Al--pp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 98 RITIYCGDFFELPPE----DVGKFDLIYDRTFLCAL--PPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SEEEEES-TTTGGGS----CHHSEEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEEE
T ss_pred ceEEEEcccccCChh----hcCCceEEEEecccccC--CHHHHHHHHHHHHHHhCCCCcEE
Confidence 689999999987642 22589999998888776 55778899999999999999944
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.7e-11 Score=109.68 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=83.4
Q ss_pred CEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++.. .++..++.++++|+.+. + +.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~--------~~l~~~i~~~~~D~~~~-l-----~~~ 200 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER--------HGLEDRVTLIESDLFAA-L-----PGR 200 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCCCcEEEEECchhhh-C-----CCC
Confidence 689999999999999887753 45899999999999999999864 23345699999998642 2 346
Q ss_pred CeeEEEeccc------c-------ccc-----C---CCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 165 PFDICSCQFA------M-------HYS-----W---STEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 165 ~fD~V~~~~~------l-------~~~-----~---~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
+||+|+++-- + +|- + +.......+++++.+.|+|||.+++.+....
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~ 267 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR 267 (307)
T ss_pred CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 8999999621 1 110 0 0113357889999999999999999886543
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-11 Score=91.62 Aligned_cols=103 Identities=26% Similarity=0.377 Sum_probs=82.4
Q ss_pred EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCe
Q 017369 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~f 166 (372)
+|+|+|||.|..+..++.....+++++|+++.+++.+++.... ....++.++..|+.+... ...++|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~----~~~~~~ 67 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA---------LLADNVEVLKGDAEELPP----EADESF 67 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc---------ccccceEEEEcChhhhcc----ccCCce
Confidence 4899999999998888765566899999999999998853321 123468889999876542 034789
Q ss_pred eEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 167 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
|+|++...+++. ......+++.+.+.|+|||.++++
T Consensus 68 d~i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 68 DVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999998873 367889999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=102.05 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=83.6
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
..+...++.+|||+|||+|.++..++.. +.++|+|+|+|+.+++.|++++... +. .+++++.+|+.+. +
T Consensus 34 ~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~--------~~-~~v~~~~~d~~~~-~ 103 (196)
T PRK07402 34 SQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF--------GV-KNVEVIEGSAPEC-L 103 (196)
T ss_pred HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------CC-CCeEEEECchHHH-H
Confidence 3345567899999999999998888754 3468999999999999999987631 22 3688999998542 1
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
.. ....+|.+++... .....+++++.++|+|||++++..++.+.+
T Consensus 104 ~~---~~~~~d~v~~~~~--------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~ 148 (196)
T PRK07402 104 AQ---LAPAPDRVCIEGG--------RPIKEILQAVWQYLKPGGRLVATASSLEGL 148 (196)
T ss_pred hh---CCCCCCEEEEECC--------cCHHHHHHHHHHhcCCCeEEEEEeecHHHH
Confidence 10 1234566654221 235689999999999999999998877544
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=112.28 Aligned_cols=102 Identities=25% Similarity=0.306 Sum_probs=77.7
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.+++..++.+..+|+|+|+++.+++.|+++... +++..++.+. ... ..
T Consensus 158 ~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~--------N~~~~~~~v~--~~~--~~---- 221 (295)
T PF06325_consen 158 YVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL--------NGVEDRIEVS--LSE--DL---- 221 (295)
T ss_dssp HSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH--------TT-TTCEEES--CTS--CT----
T ss_pred hccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH--------cCCCeeEEEE--Eec--cc----
Confidence 4567899999999999999988888888999999999999999999874 4445555442 111 11
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..++||+|+++-.. .-+..++..+.++|+|||+++++-
T Consensus 222 -~~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 222 -VEGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp -CCS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred -ccccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEcc
Confidence 34899999987554 345678888999999999999875
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.4e-11 Score=108.99 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=83.4
Q ss_pred CEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++... .++..++.++++|+.+ ++ +..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~--------~~~~~~v~~~~~d~~~-~~-----~~~ 181 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK--------NQLEHRVEFIQSNLFE-PL-----AGQ 181 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECchhc-cC-----cCC
Confidence 699999999999999888754 35899999999999999998763 2333458999999865 22 334
Q ss_pred CeeEEEecc-------------ccccc--------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 165 PFDICSCQF-------------AMHYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 165 ~fD~V~~~~-------------~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+||+|+++- +..|- .+.......++..+.+.|+|||++++.+...
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 899999962 11111 0012356789999999999999999988754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=100.35 Aligned_cols=122 Identities=20% Similarity=0.210 Sum_probs=82.5
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
+|.......+.+|||||||||.++..++...+. ...-.|+++..+...+......+. .++. .-+..|+...
T Consensus 17 vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~-----~Nv~---~P~~lDv~~~ 88 (204)
T PF06080_consen 17 VLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL-----PNVR---PPLALDVSAP 88 (204)
T ss_pred HHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC-----cccC---CCeEeecCCC
Confidence 444443334446999999999999999886442 466889988876555554432111 1112 2234555544
Q ss_pred ccccc---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 155 HLDKV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 155 ~~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.... ....++||.|+|.+++|.+ +......+++.+.++|++||.|++--|
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 22111 0024689999999999976 888999999999999999999987654
|
The function of this family is unknown. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=110.05 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=81.5
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++..++.. +..+++|+|+|+.|++.|+++.... ..++.++++|+.+..+.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----------g~rV~fi~gDl~e~~l~---- 315 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----------GARVEFAHGSWFDTDMP---- 315 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------CCcEEEEEcchhccccc----
Confidence 45679999999999999888764 4568999999999999999988631 23689999998654321
Q ss_pred CCCCeeEEEeccccc-----cc----------------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMH-----YS----------------WSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~-----~~----------------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|+|+--.. .. -+...-.+.+++.+.+.|+|||.+++.+..
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 235799999965210 00 011122457788888999999998877643
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=105.55 Aligned_cols=116 Identities=12% Similarity=0.010 Sum_probs=83.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||||||+|..+..+... +..+++++|+++++++.|++.+.. .....+++++++|+.+.--.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--------~~~~~rv~v~~~Da~~~l~~--- 132 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL--------PENGERFEVIEADGAEYIAV--- 132 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--------CCCCCceEEEECCHHHHHHh---
Confidence 345679999999999988887765 445799999999999999998752 22245799999998653211
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..++||+|++...-.......-....+++++.++|+|||++++...+.
T Consensus 133 -~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 133 -HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred -CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 236899999863111100000113689999999999999999876433
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-10 Score=95.08 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=95.4
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.+..+.+.++.+++|+|||+|..+.+|+.. +.++|+++|-++++++..+++..+. + ..++.++.+|+-+.
T Consensus 26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f--------g-~~n~~vv~g~Ap~~ 96 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF--------G-VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--------C-CCcEEEEeccchHh
Confidence 445667889999999999999999999854 4568999999999999999988753 2 45899999998653
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
-- ...++|.|+...+- ....+|+.+...|||||++++.....+.....+.
T Consensus 97 L~-----~~~~~daiFIGGg~--------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~ 146 (187)
T COG2242 97 LP-----DLPSPDAIFIGGGG--------NIEEILEAAWERLKPGGRLVANAITLETLAKALE 146 (187)
T ss_pred hc-----CCCCCCEEEECCCC--------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHH
Confidence 21 22379999988873 2568999999999999999998876665544443
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=104.70 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=73.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+|||+|||+|.++..++... ..+|+|+|+++.|++.|+++.. ++.++++|+.+..
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~--------------~v~~v~~D~~e~~------ 122 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP--------------EAEWITSDVFEFE------ 122 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc--------------CCEEEECchhhhc------
Confidence 345799999999999888776643 4589999999999999988653 4788999998654
Q ss_pred CCCCeeEEEecccccccCCCHHH------------------HHHHHHHHHHhcCCCcEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEAR------------------ARRALANVSALLRPGGTFI 203 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~------------------~~~~l~~i~~~LkpgG~li 203 (372)
...+||+|+++-.+++. ...+ ...++..+...|+|+|.++
T Consensus 123 ~~~kFDlIIsNPPF~~l--~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 123 SNEKFDVVISNPPFGKI--NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred ccCCCcEEEEcCCcccc--CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 24689999998877764 1121 2355566667777777544
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=101.04 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=78.5
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc-
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD- 157 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~- 157 (372)
.+.++.+|||+|||+|.++..++.. ..++|+|+|+|+.+ . ..++.++++|+.+....
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~------------~~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P------------IENVDFIRGDFTDEEVLN 88 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c------------CCCceEEEeeCCChhHHH
Confidence 4578899999999999998887764 34579999999854 1 12477888888654310
Q ss_pred ---cccCCCCCeeEEEeccccc----ccC---CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh---HHHHHHHh
Q 017369 158 ---KVLADDAPFDICSCQFAMH----YSW---STEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLR 217 (372)
Q Consensus 158 ---~~~~~~~~fD~V~~~~~l~----~~~---~~~~~~~~~l~~i~~~LkpgG~li~~~~~~---~~~~~~l~ 217 (372)
... +.++||+|++..+.+ +.. ........++.++.++|+|||++++.+... ..++..++
T Consensus 89 ~l~~~~-~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 89 KIRERV-GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR 160 (188)
T ss_pred HHHHHh-CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence 011 456899999865422 110 011235789999999999999999866543 34444443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.4e-11 Score=103.31 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
...++..+.++++.+|||||||+|..+.-++.. ..+.|+++|+.+..++.|++++...+ ..++.++++|
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---------~~nv~~~~gd 131 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---------IDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---------THSEEEEES-
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---------cCceeEEEcc
Confidence 455666777899999999999999988777663 34579999999999999999987421 2379999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.....- ...+||.|++..+...+ -..+.+.|++||++++-+.
T Consensus 132 g~~g~~-----~~apfD~I~v~~a~~~i----------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 132 GSEGWP-----EEAPFDRIIVTAAVPEI----------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGGTTG-----GG-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred hhhccc-----cCCCcCEEEEeeccchH----------HHHHHHhcCCCcEEEEEEc
Confidence 865332 45789999999887543 2457788999999998764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-10 Score=104.39 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=83.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...++.+|||+|||+|..+..++... ...++|+|+|+.+++.|+++.. .....++.++++|+.+. +
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~---------~~~~~~i~~~~~d~~~~-~--- 171 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK---------HGLGARVEFLQGDWFEP-L--- 171 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---------hCCCCcEEEEEccccCc-C---
Confidence 34567899999999999999887754 4689999999999999999875 11234689999998542 2
Q ss_pred cCCCCCeeEEEeccccc------cc----------------CCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 160 LADDAPFDICSCQFAMH------YS----------------WSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~------~~----------------~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.++||+|+++.... .+ .........+++++.++|+|||++++.+.
T Consensus 172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 247899999863211 00 01123457889999999999999998763
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=98.76 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=82.5
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.++......++.+|||+|||+|.++..++.. ..+++|+|+++.+++.+++++.. ..+++++++|+.+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-----------~~~v~ii~~D~~~~ 71 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-----------ADNLTVIHGDALKF 71 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-----------CCCEEEEECchhcC
Confidence 3445555677889999999999999999876 56899999999999999988752 23689999999887
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
++ ++..||.|+++.-.+. +.+....+++.. .+.++|.+++..-..+
T Consensus 72 ~~-----~~~~~d~vi~n~Py~~---~~~~i~~~l~~~--~~~~~~~l~~q~e~a~ 117 (169)
T smart00650 72 DL-----PKLQPYKVVGNLPYNI---STPILFKLLEEP--PAFRDAVLMVQKEVAR 117 (169)
T ss_pred Cc-----cccCCCEEEECCCccc---HHHHHHHHHhcC--CCcceEEEEEEHHHhH
Confidence 76 4457999998765542 223333333321 2457888877653333
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=106.66 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=80.9
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
++..+.++++.+|||+|||+|..+..+++.. .+.|+|+|+++++++.|++++... +. .++.++++|+..
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~--------g~-~nV~~i~gD~~~ 142 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL--------GI-ENVIFVCGDGYY 142 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc--------CC-CcEEEEeCChhh
Confidence 4444456788999999999999988887643 247999999999999999987642 22 368899999865
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
... ...+||+|++..++... ...+.+.|+|||.+++..
T Consensus 143 ~~~-----~~~~fD~Ii~~~g~~~i----------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVP-----EFAPYDVIFVTVGVDEV----------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccc-----ccCCccEEEECCchHHh----------HHHHHHhcCCCCEEEEEe
Confidence 443 34679999988666432 234678999999988765
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=106.31 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=85.0
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+...+||+||||+|..+..+++. +..+|+++|+++.+++.|++.+...... ..-..+++++.+|+...-..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~----~~~d~rv~v~~~Da~~~l~~---- 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG----AYDDPRVELVIGDGIKFVAE---- 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc----cccCCceEEEECchHHHHhh----
Confidence 45679999999999999998876 4568999999999999999987531100 00145799999998763211
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..++||+|++...-.+.....--...+++.+.+.|+|||.+++...
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 3578999999764443211111136789999999999999988654
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=102.97 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=94.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.....+|||+|||+|..++.++.+ ...+++|||+.+.|.+.|++..+. +++..+++++++|+.+.....
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l--------n~l~~ri~v~~~Di~~~~~~~-- 111 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL--------NPLEERIQVIEADIKEFLKAL-- 111 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh--------CcchhceeEehhhHHHhhhcc--
Confidence 345789999999999998888776 447899999999999999999874 567789999999998755321
Q ss_pred CCCCCeeEEEeccccccc--------------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh--HHHHHHHhh
Q 017369 161 ADDAPFDICSCQFAMHYS--------------WSTEARARRALANVSALLRPGGTFIGTMPDA--NVIIKKLRE 218 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~--------------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~--~~~~~~l~~ 218 (372)
...+||+|+|+--.+-. ++...+.+.+++.+.++|||||.+.+..+.. ..+++.++.
T Consensus 112 -~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~ 184 (248)
T COG4123 112 -VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKS 184 (248)
T ss_pred -cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHh
Confidence 23579999997422110 0112346889999999999999998877643 344555544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=98.01 Aligned_cols=110 Identities=22% Similarity=0.288 Sum_probs=87.4
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+.+.++.+|||||||+|..+.-+++. .++|+.+|..+...+.|++++...+ + .++.+.++|..
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg--------~-~nV~v~~gDG~ 130 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLG--------Y-ENVTVRHGDGS 130 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcC--------C-CceEEEECCcc
Confidence 455667778899999999999999888777654 3499999999999999999987532 2 25999999986
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.-.- +..+||.|++..+...+ -+.+.+.||+||++++-+.
T Consensus 131 ~G~~-----~~aPyD~I~Vtaaa~~v----------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 131 KGWP-----EEAPYDRIIVTAAAPEV----------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCCC-----CCCCcCEEEEeeccCCC----------CHHHHHhcccCCEEEEEEc
Confidence 5322 55899999998877644 2456788999999987764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=97.96 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=57.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++...|-|+|||.+.++..+. ..-.|..+|+-.. +-.++.+|+..+|+ +
T Consensus 71 ~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~------------------------n~~Vtacdia~vPL-----~ 119 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP------------------------NPRVTACDIANVPL-----E 119 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH----S---EEEEESS-S------------------------STTEEES-TTS-S-------
T ss_pred CCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC------------------------CCCEEEecCccCcC-----C
Confidence 446799999999998775542 2235999998541 12357899999998 7
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++|++++..+|.. .++..++.++.|+|||||.|.+..
T Consensus 120 ~~svDv~VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 120 DESVDVAVFCLSLMG-----TNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp TT-EEEEEEES---S-----S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEE
Confidence 899999999998875 578899999999999999997764
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=109.19 Aligned_cols=114 Identities=24% Similarity=0.322 Sum_probs=83.8
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
+.+.++.+|||+|||+|..+..++.... +.|+|+|+++.+++.+++++... +.++.++++|+.+.+.
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----------g~~~~~~~~D~~~~~~-- 307 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----------GLKATVIVGDARDPAQ-- 307 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----------CCCeEEEEcCcccchh--
Confidence 3456889999999999999988887543 58999999999999999998642 2246889999976431
Q ss_pred ccCCCCCeeEEEeccc------c------cccCCCHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFA------M------HYSWSTEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~------l------~~~~~~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+...++||.|++... + .|. .+.. ...++|..+.+.|||||+++.++.
T Consensus 308 -~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~-~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 308 -WWDGQPFDRILLDAPCSATGVIRRHPDIKWL-RRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred -hcccCCCCEEEECCCCCcccccccCcccccc-CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 013468999995331 1 111 1122 235789999999999999997763
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.7e-10 Score=102.82 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=83.5
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|..+..++.. ..+.|+++|+++.+++.++++++.. ++ .++.++++|+..++.
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--------g~-~~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--------GV-LNVAVTNFDGRVFGA- 136 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------CC-CcEEEecCCHHHhhh-
Confidence 35578899999999999999887664 2458999999999999999998742 22 358889999876543
Q ss_pred cccCCCCCeeEEEecc------cccccC-----CCHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQF------AMHYSW-----STEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~-----~~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+.||.|++.- ++..-. -+.+ ....+|+++.+.|||||+++.++-
T Consensus 137 ----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 137 ----AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred ----hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 345699999742 111100 0111 235699999999999999988763
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-10 Score=108.69 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=85.1
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|+.+..++.. +.+.|+++|+++.+++.+++++... ++. ++.++++|+.+.+..
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--------g~~-~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--------GLK-SIKILAADSRNLLEL 318 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--------CCC-eEEEEeCChhhcccc
Confidence 34567899999999999999888764 3468999999999999999988742 222 589999998765410
Q ss_pred cccCCCCCeeEEEec------ccccccCC-----CHHH-------HHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQ------FAMHYSWS-----TEAR-------ARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~------~~l~~~~~-----~~~~-------~~~~l~~i~~~LkpgG~li~~~ 206 (372)
... ..++||.|++. .++++..+ +..+ ..++|.++.+.|||||+++.++
T Consensus 319 ~~~-~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 319 KPQ-WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccc-ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 000 24689999974 23332211 1112 4688999999999999998765
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-10 Score=109.05 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=82.9
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+|||+|||+|..+..++.. ..+.|+|+|+|+.+++.+++++.. .++ .++.++++|+....
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~--------~g~-~~v~~~~~Da~~~~--- 314 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA--------LGI-TIIETIEGDARSFS--- 314 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------hCC-CeEEEEeCcccccc---
Confidence 4567899999999999988777653 345899999999999999999874 222 25899999987653
Q ss_pred ccCCCCCeeEEEec----c--cc------cccCCCHH-------HHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 159 VLADDAPFDICSCQ----F--AM------HYSWSTEA-------RARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 159 ~~~~~~~fD~V~~~----~--~l------~~~~~~~~-------~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++++||+|++. . ++ .|.+ +.+ ....+|.++.+.|||||+++.++..
T Consensus 315 ---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~-~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 315 ---PEEQPDAILLDAPCTGTGVLGRRAELRWKL-TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred ---cCCCCCEEEEcCCCCCcchhhcCcchhhcC-CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 34689999963 1 11 1111 112 2357899999999999999987743
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=95.88 Aligned_cols=120 Identities=21% Similarity=0.222 Sum_probs=98.2
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
.++....+.|+++|||.|.|+|.++..++.. +.++|+.+|+.++..+.|+++++. .++..++.+..+|+.
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~--------~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE--------FGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH--------hccccceEEEecccc
Confidence 3555668899999999999999999988853 557999999999999999999984 355666888999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
+.-. ...||.|+.. ..++-.+++.++++|+|||.+++-+|+.+.+.+.+.
T Consensus 157 ~~~~------~~~vDav~LD---------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~ 206 (256)
T COG2519 157 EGID------EEDVDAVFLD---------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE 206 (256)
T ss_pred cccc------ccccCEEEEc---------CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence 7654 3489999753 245668999999999999999999999877655433
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=107.34 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=85.0
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|+.+..++.. +.++|+++|+|+.+++.+++++... ++. ++.++++|+..++..
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--------g~~-~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--------KLS-SIEIKIADAERLTEY 303 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--------CCC-eEEEEECchhhhhhh
Confidence 35678899999999999988887764 3568999999999999999998742 222 588999998765410
Q ss_pred cccCCCCCeeEEEecc---cccccC--------CCH-------HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 158 KVLADDAPFDICSCQF---AMHYSW--------STE-------ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~---~l~~~~--------~~~-------~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||.|++.. ++..+- .+. ....++|.++.+.|||||.++.+|..
T Consensus 304 ----~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 304 ----VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred ----hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 246899999742 111110 011 12467799999999999999887743
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.7e-10 Score=110.17 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=81.2
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++... .++..++.++++|+.+. + +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~--------~~l~~~v~~~~~D~~~~-~-----~ 203 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK--------YEVTDRIQIIHSNWFEN-I-----E 203 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH--------cCCccceeeeecchhhh-C-----c
Confidence 3468999999999999888764 456899999999999999998763 23345688999997542 2 3
Q ss_pred CCCeeEEEeccc--------------ccc-----cCC---CHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFA--------------MHY-----SWS---TEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~--------------l~~-----~~~---~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++||+|+++-- ..| ++. .......+++.+.+.|+|||.+++.+.
T Consensus 204 ~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 204 KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 468999999531 111 111 112356688899999999999998774
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=106.92 Aligned_cols=117 Identities=18% Similarity=0.182 Sum_probs=82.8
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
+.+.++.+|||+|||+|+.+..++.. +.++|+|+|+++.+++.++++++.. ++...+.+..+|....+.
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~--------g~~~~v~~~~~d~~~~~~-- 303 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL--------GLTIKAETKDGDGRGPSQ-- 303 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc--------CCCeEEEEeccccccccc--
Confidence 45668899999999999999888764 3468999999999999999998742 223234446677654331
Q ss_pred ccCCCCCeeEEEec------ccccccCC-----CHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQ------FAMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~------~~l~~~~~-----~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+...++||.|++. .+++...+ +.. ....+|.++.++|||||.++.++.
T Consensus 304 -~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 304 -WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred -cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 0134689999863 23332211 111 246899999999999999998764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=97.36 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=77.8
Q ss_pred CCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
..+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++... .++++++|+.+.. ... ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------------~~~~~~~D~~~~l-~~~--~~ 151 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------------GGTVHEGDLYDAL-PTA--LR 151 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------------CCEEEEeechhhc-chh--cC
Confidence 458999999999999988764 3347999999999999999988631 2478888886521 111 12
Q ss_pred CCeeEEEecccc------ccc------C----------CCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 164 APFDICSCQFAM------HYS------W----------STEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 164 ~~fD~V~~~~~l------~~~------~----------~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++||+|+++--. ..+ + +..+-...++..+.+.|+|||.+++.+..
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 579999987421 110 0 01122468888899999999999987753
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-10 Score=106.03 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=82.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++.. +++. .+++++++|+.+..- ....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~--------Ngl~~~~v~~i~~D~~~~l~-~~~~ 289 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL--------NKLDLSKAEFVRDDVFKLLR-TYRD 289 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCCcEEEEEccHHHHHH-HHHh
Confidence 46789999999999998876666666899999999999999998864 3443 368999999976421 1000
Q ss_pred CCCCeeEEEecccccc-----cCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..++||+|++.--..- ++........++..+.++|+|||.++...
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 2458999998743210 00011245566677889999999988644
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.5e-10 Score=113.87 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=85.6
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++.. +++. .++.++++|+.+..- . .
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~--------ng~~~~~v~~i~~D~~~~l~-~---~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL--------NGLSGRQHRLIQADCLAWLK-E---A 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCCccceEEEEccHHHHHH-H---c
Confidence 5789999999999999999887666899999999999999999874 3333 478999999875321 0 1
Q ss_pred CCCeeEEEecccc-------cccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAM-------HYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l-------~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++||+|++.--. ...+....+...++..+.++|+|||.+++++
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4689999996321 1122234567788999999999999988765
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.1e-10 Score=97.28 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=72.0
Q ss_pred CCCEEEEecCCcccc----HHHHHH---cCC---CEEEEEeCChHHHHHHHHHhcC-CCcc------------------c
Q 017369 84 RGDVVLDLACGKGGD----LIKWDK---AKI---GYYVGIDIAEGSIEDCRTRYNG-DADH------------------H 134 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~----~~~l~~---~~~---~~v~gvD~s~~~l~~a~~~~~~-~~~~------------------~ 134 (372)
+..+|+..||++|.- ++.+.. ... -+++|+|+|+.+|+.|++-.-. ...+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 567999999999973 222222 112 3799999999999999873210 0000 0
Q ss_pred ccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 135 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.-...+...+.|.+.|+.+.+. +.+.||+|+|.+++.|+ +.+....+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~-----~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP-----PFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCc-----ccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0001123468999999987222 46899999999999998 77888999999999999999998753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-09 Score=97.08 Aligned_cols=130 Identities=21% Similarity=0.289 Sum_probs=92.1
Q ss_pred cccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC
Q 017369 63 IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141 (372)
Q Consensus 63 ~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 141 (372)
+++...+..=-+-++..+....+.+|||+|||.|-++..+++.. ..+++.+|++..+++.|++++... +..
T Consensus 137 VFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N--------~~~ 208 (300)
T COG2813 137 VFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN--------GVE 208 (300)
T ss_pred CCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc--------CCC
Confidence 44444443333445555555566799999999999999998865 457999999999999999998742 112
Q ss_pred cCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE-ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 142 ~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+..++..|..+.. .++||+|+|+--+|--.... .-..++++...+.|++||.|.+..-.
T Consensus 209 -~~~v~~s~~~~~v-------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 209 -NTEVWASNLYEPV-------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred -ccEEEEecccccc-------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence 2256677766432 24899999998877431111 12348999999999999998877643
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=98.20 Aligned_cols=105 Identities=22% Similarity=0.313 Sum_probs=78.7
Q ss_pred EEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC
Q 017369 87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 165 (372)
+|||+|||+|..+..++.... ..|+|+|+|+.+++.|++++.. .++ .++.++++|+.+.- .++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~--------~~l-~~~~~~~~dlf~~~-------~~~ 176 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER--------NGL-VRVLVVQSDLFEPL-------RGK 176 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH--------cCC-ccEEEEeeeccccc-------CCc
Confidence 799999999999999987655 4899999999999999999874 333 45666776765422 248
Q ss_pred eeEEEeccc-----cc--------c-----cC---CCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 166 FDICSCQFA-----MH--------Y-----SW---STEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 166 fD~V~~~~~-----l~--------~-----~~---~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
||+|+++-- .. | ++ +..+-...++.++.+.|+|||.+++.+.
T Consensus 177 fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 177 FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred eeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 999999731 00 0 00 1123467888999999999999988775
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=98.69 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=81.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.+.+||++|||+|..+..+++.. ..+++++|+++.+++.|++.+...+. .--..+++++.+|+.+.--.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~-----~~~~~~v~i~~~D~~~~l~~---- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG-----SYDDPRVDLQIDDGFKFLAD---- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc-----cccCCceEEEECchHHHHHh----
Confidence 344599999999999888887764 56799999999999999987643110 00124678888887652211
Q ss_pred CCCCeeEEEecccccccCCCHHH--HHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|++....... .... ...+++.+.+.|+|||.+++...+
T Consensus 142 ~~~~yDvIi~D~~~~~~--~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVG--PAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred CCCCccEEEEeCCCCCC--cccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 24689999987653221 1112 468899999999999999987544
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=96.82 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=82.2
Q ss_pred CCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+..+|||+|||+|..+..++.. ..++++++|+++++++.|++++.. .++..+++++.+|+.+.- ....
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~--------~gl~~~i~~~~gda~~~L-~~l~ 137 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK--------AGVDHKINFIQSDALSAL-DQLL 137 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEEccHHHHH-HHHH
Confidence 46789999999999877766653 356899999999999999999874 455667999999997631 1100
Q ss_pred --CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.++||+|++... ......++..+.+.|+|||.+++.-
T Consensus 138 ~~~~~~~fD~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 02468999987532 2455678999999999999988653
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-09 Score=92.44 Aligned_cols=130 Identities=16% Similarity=0.152 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHh---CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeE
Q 017369 70 NNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR 145 (372)
Q Consensus 70 ~~~~k~~l~~~~---~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 145 (372)
..|+..++.... ...+..|||+|||+|..+..++.. +.+.++++|.|+.++..|.+++.. .++...+.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr--------~~l~g~i~ 202 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR--------LKLSGRIE 202 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH--------HhhcCceE
Confidence 456665555432 335568999999999999998874 556799999999999999999874 44556777
Q ss_pred EEECcCcccccccccCCCCCeeEEEecc----------------------cccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 146 LICGDCYEVHLDKVLADDAPFDICSCQF----------------------AMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 146 ~~~~D~~~~~~~~~~~~~~~fD~V~~~~----------------------~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
.++.++....+.+.-...++.|+++++- ++---.+.-+....++.-+.|.|+|||.+.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 7766665444433322568999999973 111112223445677788899999999999
Q ss_pred EEeC
Q 017369 204 GTMP 207 (372)
Q Consensus 204 ~~~~ 207 (372)
+.+.
T Consensus 283 le~~ 286 (328)
T KOG2904|consen 283 LELV 286 (328)
T ss_pred EEec
Confidence 8774
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=99.85 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=82.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHH--hcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
....+||++|||+|..+..+++.. ..+|++||+++++++.|++. +.... +..--..+++++.+|+.+.-..
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~----~~~~~DpRV~vvi~Da~~fL~~-- 222 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLN----KSAFFDNRVNVHVCDAKEFLSS-- 222 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhc----cccCCCCceEEEECcHHHHHHh--
Confidence 445799999999999888888754 46899999999999999962 11000 0011146899999999863211
Q ss_pred cCCCCCeeEEEeccccccc-CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 160 LADDAPFDICSCQFAMHYS-WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~-~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..+.||+|++...-... .....--..+++.+.+.|+|||.+++...++
T Consensus 223 --~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 223 --PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred --cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 34689999997521100 0011123678999999999999998765433
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=105.94 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=83.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.+++++.. .++. ++.++++|+.+...
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~--------~g~~-~v~~~~~D~~~~~~-- 315 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR--------LGLT-NIETKALDARKVHE-- 315 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-eEEEEeCCcccccc--
Confidence 4567889999999999999988774 356899999999999999998874 2332 48999999876531
Q ss_pred ccCCCCCeeEEEeccc------cccc-----CCCHHH-------HHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFA------MHYS-----WSTEAR-------ARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~------l~~~-----~~~~~~-------~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ..++||+|++..- +.+. ..+..+ ...+|.++.++|||||.++.++.
T Consensus 316 ~--~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 316 K--FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred h--hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 0 1268999997531 1110 001122 25689999999999999987653
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9e-09 Score=92.43 Aligned_cols=127 Identities=20% Similarity=0.287 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..++..+.+.||.+|||.|.|+|.++..+++. +.++|+.+|+.++..+.|+++++. .++..++.+.+.|
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~--------~gl~~~v~~~~~D 100 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER--------HGLDDNVTVHHRD 100 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------TTCCTTEEEEES-
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH--------cCCCCCceeEecc
Confidence 455667778899999999999999999998863 567999999999999999999875 5566789999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhc-CCCcEEEEEeCChHHHHHHHhh
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGTMPDANVIIKKLRE 218 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L-kpgG~li~~~~~~~~~~~~l~~ 218 (372)
+.+..+... .+..+|.|+...- ++-.++..+.++| ||||++++-.|+.+.+...+..
T Consensus 101 v~~~g~~~~--~~~~~DavfLDlp---------~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~ 158 (247)
T PF08704_consen 101 VCEEGFDEE--LESDFDAVFLDLP---------DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEA 158 (247)
T ss_dssp GGCG--STT---TTSEEEEEEESS---------SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHH
T ss_pred eeccccccc--ccCcccEEEEeCC---------CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHH
Confidence 976444211 1368999986543 3446889999999 8999999999998776654443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=93.30 Aligned_cols=115 Identities=23% Similarity=0.373 Sum_probs=77.4
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCccccccc------------------------
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK------------------------ 138 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~------------------------ 138 (372)
.+..+|||||-.|.++..+++. +...++|+||++..|+.|++.........-.-.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999999998875 444699999999999999998763221100000
Q ss_pred --CCCcCeEEE-------ECcCcccccccccCCCCCeeEEEeccccccc---CCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 139 --KFSFPARLI-------CGDCYEVHLDKVLADDAPFDICSCQFAMHYS---WSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 139 --~~~~~~~~~-------~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+..++.|. ..|+. .+ ....||+|+|.....|+ |. .+.+..+|+.++++|.|||+|++.-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~-----~~~~fDiIlcLSiTkWIHLNwg-D~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DM-----IQPEFDIILCLSITKWIHLNWG-DDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hh-----ccccccEEEEEEeeeeEecccc-cHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 000111111 11111 11 34789999997644333 33 3678999999999999999998764
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=93.50 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=69.8
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+....|.|+|||.+.++. .....|+.+|+-+ .+-.++.+|+.++|+ +
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a------------------------~~~~V~~cDm~~vPl-----~ 225 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA------------------------VNERVIACDMRNVPL-----E 225 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeec------------------------CCCceeeccccCCcC-----c
Confidence 456789999999997664 3344699999843 134568899999998 8
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++.|++++..+|.- .++..++.++.|+|++||.+.+..
T Consensus 226 d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEe
Confidence 999999999888764 678999999999999999997664
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=98.31 Aligned_cols=131 Identities=23% Similarity=0.331 Sum_probs=96.0
Q ss_pred ccccchhhhHHHHHHHHHH-hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC
Q 017369 62 PIIHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF 140 (372)
Q Consensus 62 ~~~~~~~~~~~~k~~l~~~-~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 140 (372)
|.+....+..-+.+++.++ ...+|..|||.-||||+++.+....+. +++|.|++..|++-|+.+++.++.
T Consensus 174 Pf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i-------- 244 (347)
T COG1041 174 PFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI-------- 244 (347)
T ss_pred CccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc--------
Confidence 3444455555566666555 577899999999999999999865444 899999999999999999875321
Q ss_pred CcCeEEEEC-cCcccccccccCCCCCeeEEEeccccc----ccCCC-HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 141 SFPARLICG-DCYEVHLDKVLADDAPFDICSCQFAMH----YSWST-EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 141 ~~~~~~~~~-D~~~~~~~~~~~~~~~fD~V~~~~~l~----~~~~~-~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....+... |+..+++ ++.++|.|++.--.- .--.. .+-...+|+.++++|++||++++..|
T Consensus 245 -~~~~~~~~~Da~~lpl-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 245 -EDYPVLKVLDATNLPL-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -CceeEEEecccccCCC-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 13444444 9999998 566899999953110 00001 23468899999999999999999988
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.98 E-value=6e-08 Score=87.26 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=88.6
Q ss_pred CCCEEEEecCCccccHHHHHHcC---CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..-+||||+||.|+.....+... ...|.-.|+|+..++..++..+. .++..-++|.++|+.+..--..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~--------~gL~~i~~f~~~dAfd~~~l~~- 205 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE--------RGLEDIARFEQGDAFDRDSLAA- 205 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH--------cCCccceEEEecCCCCHhHhhc-
Confidence 56799999999999988877643 35799999999999999998875 4566667999999987432111
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
-....++++++..+.++ .+-+-+...|..+.+++.|||++|.|.
T Consensus 206 -l~p~P~l~iVsGL~ElF-~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 206 -LDPAPTLAIVSGLYELF-PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred -cCCCCCEEEEecchhhC-CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 23457999998888775 444457778999999999999999887
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-09 Score=93.10 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=72.9
Q ss_pred CCCEEEEecCCccccHHHHHHc----CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.+.+|||+|||+|.++..+++. ....|+|+|+++.+++.|+++.. ++.++++|+...++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------------~~~~~~~D~~~~~~--- 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------------EATWINADALTTEF--- 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------------CCEEEEcchhcccc---
Confidence 4679999999999998887753 24579999999999999997754 37889999876443
Q ss_pred cCCCCCeeEEEeccccccc--------CCCHHHHHHHHHHHHHhcCCCcE
Q 017369 160 LADDAPFDICSCQFAMHYS--------WSTEARARRALANVSALLRPGGT 201 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~ 201 (372)
+++||+|+++--..-. .....-...++..+.+++++|+.
T Consensus 112 ---~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 112 ---DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ---cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 4689999998533211 01113356688888887777775
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-09 Score=96.22 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=83.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
++..+||+||||.|..+..+++.. ..+|+.+|+++.+++.|++.+..... .--..+++++.+|+...--. .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-----~~~dpRv~vi~~Da~~~l~~--~- 161 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV-----GFDDPRVNLHIGDGVEFLKN--A- 161 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc-----ccCCCceEEEEChHHHHHhh--c-
Confidence 457899999999999999988764 45799999999999999998753110 01145799999998653210 0
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.++||+|++...-.+.....---..+++.+.++|+|||.++...
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 246899999875443321111123578999999999999997643
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=89.30 Aligned_cols=108 Identities=8% Similarity=-0.020 Sum_probs=79.2
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++.....+|+++|+++.+++.|+++++.. ++ .++.++++|+.+... . .
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~--------~~-~~v~~~~~D~~~~l~-~---~ 118 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL--------KA-GNARVVNTNALSFLA-Q---P 118 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh--------CC-CcEEEEEchHHHHHh-h---c
Confidence 457899999999999998766666678999999999999999987642 22 268999999865321 0 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHH--hcCCCcEEEEEeCC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD 208 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~li~~~~~ 208 (372)
..+||+|++.--... .-...++..+.. .|+|+|.+++..+.
T Consensus 119 ~~~fDlV~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 119 GTPHNVVFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCceEEEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 357999999866322 123345555554 48999999988754
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.4e-09 Score=93.72 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=79.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...+..+|||||+|.|.++..++.. +..+++.+|+ |..++.+++ .. +++++.+|+. .++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~--------------rv~~~~gd~f-~~~--- 156 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-AD--------------RVEFVPGDFF-DPL--- 156 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TT--------------TEEEEES-TT-TCC---
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-cc--------------ccccccccHH-hhh---
Confidence 4456679999999999999999875 4447999998 888888877 22 6999999998 454
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC--cEEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGT 205 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg--G~li~~ 205 (372)
|. +|++++..++|+. +.++...+|+++++.|+|| |++++.
T Consensus 157 --P~--~D~~~l~~vLh~~--~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 --PV--ADVYLLRHVLHDW--SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp --SS--ESEEEEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred --cc--ccceeeehhhhhc--chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 33 9999999999987 6789999999999999999 998764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-09 Score=90.60 Aligned_cols=121 Identities=20% Similarity=0.281 Sum_probs=84.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.....+||||||.|.++..++... ...++|+|++...+..|..+.... -..|+.++++|+...- .. +.
T Consensus 16 ~~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---------~l~Nv~~~~~da~~~l-~~-~~ 84 (195)
T PF02390_consen 16 NDNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---------GLKNVRFLRGDARELL-RR-LF 84 (195)
T ss_dssp SCCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---------TTSSEEEEES-CTTHH-HH-HS
T ss_pred CCCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---------cccceEEEEccHHHHH-hh-cc
Confidence 445599999999999999998864 446999999999999998887631 1458999999997621 11 22
Q ss_pred CCCCeeEEEecccccccCCCHH------HHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEA------RARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~------~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l 216 (372)
+++++|.|..++-=-|. ... --..++..++++|+|||.+.+.|-+.+.....+
T Consensus 85 ~~~~v~~i~i~FPDPWp--K~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~ 143 (195)
T PF02390_consen 85 PPGSVDRIYINFPDPWP--KKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWML 143 (195)
T ss_dssp TTTSEEEEEEES-------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHH
T ss_pred cCCchheEEEeCCCCCc--ccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 56899999887643321 000 125799999999999999999997776554433
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=96.75 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=87.4
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++.+..+-.+.+|||+|||+|.++...++++..+|+|||-|.-+ +.|++.... +++...++++.+.+.
T Consensus 49 r~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~--------N~~~~ii~vi~gkvE 119 (346)
T KOG1499|consen 49 RNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD--------NGLEDVITVIKGKVE 119 (346)
T ss_pred HHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh--------cCccceEEEeecceE
Confidence 33345555556889999999999999998888888889999988744 888888765 455667999999999
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
++.+ |.+++|+|++-+.=++++- +.-+..+|-.=-+.|+|||.++
T Consensus 120 di~L-----P~eKVDiIvSEWMGy~Ll~-EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 120 DIEL-----PVEKVDIIVSEWMGYFLLY-ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEec-----CccceeEEeehhhhHHHHH-hhhhhhhhhhhhhccCCCceEc
Confidence 8866 5689999999764444321 1224445555568999999986
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.6e-09 Score=97.14 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=82.1
Q ss_pred CCEEEEecCCcccc----HHHHHHc----C-CCEEEEEeCChHHHHHHHHHhcCCC------c---------------c-
Q 017369 85 GDVVLDLACGKGGD----LIKWDKA----K-IGYYVGIDIAEGSIEDCRTRYNGDA------D---------------H- 133 (372)
Q Consensus 85 ~~~VLDlGcG~G~~----~~~l~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~------~---------------~- 133 (372)
..+|+..||++|.= +..+.+. . .-+|+|+|+|+.+|+.|++-.-... . .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 47999999999972 2222221 1 2369999999999999987521100 0 0
Q ss_pred cccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+-...+...+.|.+.|+.+.+++ +.+.||+|+|.+++.|+ +.+...++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~----~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA----VPGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc----cCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 000112335688889998764431 35789999999999997 67889999999999999999987653
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=100.34 Aligned_cols=122 Identities=19% Similarity=0.207 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+...++.+|||+|||+|.++..++... ..|+|+|+|+.|++.|+++... .++ .++.++++|+.
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~--------~~~-~~v~~~~~d~~ 355 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARR--------NGL-DNVTFYHANLE 355 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CceEEEEeChH
Confidence 3444444455678899999999999999887654 5899999999999999998763 222 36899999986
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
+......+ .+++||+|++.---.- ....+..+.+ ++|++.++++. ++..+..
T Consensus 356 ~~l~~~~~-~~~~fD~Vi~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSC-np~tlaR 407 (443)
T PRK13168 356 EDFTDQPW-ALGGFDKVLLDPPRAG-------AAEVMQALAK-LGPKRIVYVSC-NPATLAR 407 (443)
T ss_pred Hhhhhhhh-hcCCCCEEEECcCCcC-------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhc
Confidence 53210001 3467999987543221 2244555544 68999888887 4444443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-09 Score=103.95 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=82.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHH--hcCCCcccccccCC-CcCeEEEECcCccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKF-SFPARLICGDCYEVHLDK 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~ 158 (372)
++..+|||+|||+|..+..+++.+. .+++++|+++++++.|+++ +.... ...+ .++++++.+|+.+.--.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~-----~~~~~dprv~vi~~Da~~~l~~- 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALN-----GGALDDPRVTVVNDDAFNWLRK- 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhh-----ccccCCCceEEEEChHHHHHHh-
Confidence 4567999999999999998887654 6899999999999999983 22100 0011 35789999998763211
Q ss_pred ccCCCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..++||+|++......... ..---..+++.+.+.|+|||.+++...
T Consensus 370 ---~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 370 ---LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred ---CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 2468999999864432100 001124689999999999999998653
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-08 Score=84.92 Aligned_cols=126 Identities=25% Similarity=0.284 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHH-hCCCCCEEEEecCCccccHHHHHHc--CCC--------EEEEEeCChHHHHHHHHHhcCCCcccccc
Q 017369 69 LNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKA--KIG--------YYVGIDIAEGSIEDCRTRYNGDADHHQRR 137 (372)
Q Consensus 69 ~~~~~k~~l~~~-~~~~~~~VLDlGcG~G~~~~~l~~~--~~~--------~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 137 (372)
++..+...+..+ ...++..|||..||+|.++.+.+.. ... .++|.|+++.+++.|++++..
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~-------- 83 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA-------- 83 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh--------
Confidence 344455555544 4668899999999999999887552 222 388999999999999999874
Q ss_pred cCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCH----HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 138 KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 138 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~----~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.++...+.+.+.|+.++++ .++.+|+|+++.-.---.... .-...+++++.++|++ ..++++..+
T Consensus 84 ag~~~~i~~~~~D~~~l~~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~ 152 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELPL-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN 152 (179)
T ss_dssp TT-CGGEEEEE--GGGGGG-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred cccCCceEEEecchhhccc-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence 4455678999999999885 578999999975322111111 2235678888999999 444444433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=86.21 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
-.+.+|+|+|||||.++.-.+..+...|+|+|+++++++.|+++..+ +..++.|+++|+.+..
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~----------l~g~v~f~~~dv~~~~------- 106 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE----------LLGDVEFVVADVSDFR------- 106 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----------hCCceEEEEcchhhcC-------
Confidence 36789999999999999888878888999999999999999999873 3557999999998643
Q ss_pred CCCeeEEEecc
Q 017369 163 DAPFDICSCQF 173 (372)
Q Consensus 163 ~~~fD~V~~~~ 173 (372)
..+|.|+++-
T Consensus 107 -~~~dtvimNP 116 (198)
T COG2263 107 -GKFDTVIMNP 116 (198)
T ss_pred -CccceEEECC
Confidence 6788888764
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=94.25 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=72.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++... .++ .+++|+++|+.+.... ..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~--------~~l-~~v~~~~~D~~~~~~~----~~ 238 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAE--------LGL-TNVQFQALDSTQFATA----QG 238 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CceEEEEcCHHHHHHh----cC
Confidence 56899999999999999988754 5899999999999999998864 233 3699999999765321 23
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.||+|++.---. .....+..+...++|++.++++.
T Consensus 239 ~~~D~Vv~dPPr~-------G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 239 EVPDLVLVNPPRR-------GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCCeEEEECCCCC-------CccHHHHHHHHHcCCCeEEEEEC
Confidence 5799999874311 11112222334467877776665
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=89.08 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=73.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
...++||||+|.|..+..++. ...+|+++|+|+.|....+++. .+ +.|..+..- .+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~kg----------------~~--vl~~~~w~~-----~~ 149 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKKG----------------FT--VLDIDDWQQ-----TD 149 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhCC----------------Ce--EEehhhhhc-----cC
Confidence 356899999999999999865 4558999999999987766532 12 223322211 34
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+||+|.|.+++-.. .++..+|+.+++.|+|+|++++.+
T Consensus 150 ~~fDvIscLNvLDRc----~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 150 FKFDVISCLNVLDRC----DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CceEEEeehhhhhcc----CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 689999999999765 678899999999999999998776
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-06 Score=82.27 Aligned_cols=235 Identities=13% Similarity=0.118 Sum_probs=130.9
Q ss_pred CccccchhhhHHHHHHHHh--hccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc
Q 017369 28 SHFLEDESTKVFARKVADH--YSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA 105 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~va~~--Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~ 105 (372)
..+.-++.-...|++|... |- +.+ .+ ...+......+... +.++..|+|+|||+|.-+..++..
T Consensus 32 ~k~~YD~~Gs~LFe~It~lpEYY--ptr-----~E-----~~iL~~~~~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~a 97 (319)
T TIGR03439 32 TLLLYDDEGLKLFEEITYSPEYY--LTN-----DE-----IEILKKHSSDIAAS--IPSGSMLVELGSGNLRKVGILLEA 97 (319)
T ss_pred hHhhhcchHHHHHHHHHcCCccC--ChH-----HH-----HHHHHHHHHHHHHh--cCCCCEEEEECCCchHHHHHHHHH
Confidence 4455556667788887542 21 111 11 12333333334332 356779999999999866555442
Q ss_pred -----CCCEEEEEeCChHHHHHHHHHhc-CCCcccccccCCCcCeEEEECcCcccc--cccccCCCCCeeEEEecc-ccc
Q 017369 106 -----KIGYYVGIDIAEGSIEDCRTRYN-GDADHHQRRKKFSFPARLICGDCYEVH--LDKVLADDAPFDICSCQF-AMH 176 (372)
Q Consensus 106 -----~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~~~fD~V~~~~-~l~ 176 (372)
....|+++|+|.++++.+..++. ..- -...+.-+++|..+.- +.... ......+++... ++.
T Consensus 98 L~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~--------p~l~v~~l~gdy~~~l~~l~~~~-~~~~~r~~~flGSsiG 168 (319)
T TIGR03439 98 LERQKKSVDYYALDVSRSELQRTLAELPLGNF--------SHVRCAGLLGTYDDGLAWLKRPE-NRSRPTTILWLGSSIG 168 (319)
T ss_pred HHhcCCCceEEEEECCHHHHHHHHHhhhhccC--------CCeEEEEEEecHHHHHhhccccc-ccCCccEEEEeCcccc
Confidence 23469999999999999999886 210 0123444788876531 11000 123356666654 777
Q ss_pred ccCCCHHHHHHHHHHHHH-hcCCCcEEEEEeC---ChHHHHHHHhhhc--------------CCccCCeE-------EEE
Q 017369 177 YSWSTEARARRALANVSA-LLRPGGTFIGTMP---DANVIIKKLREVE--------------GLAIGNSV-------YWI 231 (372)
Q Consensus 177 ~~~~~~~~~~~~l~~i~~-~LkpgG~li~~~~---~~~~~~~~l~~~~--------------~~~~~~~~-------~~i 231 (372)
++ +......+|+++++ .|+|||.|++.+- +.+.+........ +...|... +..
T Consensus 169 Nf--~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~a 246 (319)
T TIGR03439 169 NF--SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILGSEAFREEDWEFLG 246 (319)
T ss_pred CC--CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHHhCccccCHHHcEEEE
Confidence 76 56788999999999 9999999887652 2333332222110 11112111 111
Q ss_pred EeCchhhhccc--CC--C-CCceeeEEEEecccccCc-eeeeehHHHHHHHHHcCcEEEEec
Q 017369 232 RLDEEFADKKF--KS--S-RPFGIQYKFHLEDAVDCP-EWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 232 ~f~~~~~~~~f--~~--~-~~~g~~y~~~l~~~~~~~-e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.++.......+ .. . ..-+..+.|.-.+.+... -|=++.+.+..+++.+||+++..+
T Consensus 247 ~~n~~~~rie~~l~s~~~~~v~~~~~~f~~GE~I~te~S~Kyt~~~~~~l~~~aG~~~~~~W 308 (319)
T TIGR03439 247 EWDEELGRHEAFYIPKKDVSIGLEGVVIRKGEKIRFECSGKYDKDEREKLCQSAGLKVVDVW 308 (319)
T ss_pred EEcCCCCeEEEEEEeCCcEEEcCceEEEcCCCEEEEEeeeCCCHHHHHHHHHHCCCeeeEEE
Confidence 22222111100 00 0 001223444444444422 377889999999999999998775
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-08 Score=90.57 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+++..++......++.+|||+|||+|..+..++.. ..+|+|+|+++.|++.+++++.. ..++.++++|
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-----------~~~v~ii~~D 83 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-----------AGNVEIIEGD 83 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-----------CCCEEEEEec
Confidence 45555666666678899999999999999999876 45899999999999999988752 2369999999
Q ss_pred CcccccccccCCCCCeeEEEeccccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (372)
+.+.++ ..||.|+++...+
T Consensus 84 ~~~~~~-------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 84 ALKVDL-------PEFNKVVSNLPYQ 102 (258)
T ss_pred cccCCc-------hhceEEEEcCCcc
Confidence 987765 3489999876643
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.3e-08 Score=87.00 Aligned_cols=116 Identities=22% Similarity=0.333 Sum_probs=89.6
Q ss_pred CEEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
..+||||||.|.++..++...+. .++|||+....+..|.+++... ++. |+.+++.|+..+- +.+.+++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~--------~l~-Nlri~~~DA~~~l--~~~~~~~ 118 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL--------GLK-NLRLLCGDAVEVL--DYLIPDG 118 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc--------CCC-cEEEEcCCHHHHH--HhcCCCC
Confidence 58999999999999999987554 5999999999999999888742 222 8999999997642 2232566
Q ss_pred CeeEEEecccccccCCCHH------HHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 165 PFDICSCQFAMHYSWSTEA------RARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~------~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
+.|-|..+|.=-|. -.. -...+++.+.+.|+|||.+.+.|-+.+....
T Consensus 119 sl~~I~i~FPDPWp--KkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 119 SLDKIYINFPDPWP--KKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CeeEEEEECCCCCC--CccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 99999988754442 001 1257999999999999999999987766555
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.5e-08 Score=103.79 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=82.9
Q ss_pred CCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcc-------cccccCCCcCeEEEECcCccccc
Q 017369 85 GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADH-------HQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
+.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++....+.. .+..+....++.++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999987753 468999999999999999988642110 00011223469999999875321
Q ss_pred ccccCCCCCeeEEEeccc--------------cc-------c-----c--------CCCHHHHHHHHHHHHHhcCCCcEE
Q 017369 157 DKVLADDAPFDICSCQFA--------------MH-------Y-----S--------WSTEARARRALANVSALLRPGGTF 202 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~--------------l~-------~-----~--------~~~~~~~~~~l~~i~~~LkpgG~l 202 (372)
. ...+||+|+++-- .. | . -+...-.+.++.++.+.|+|||.+
T Consensus 199 ~----~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l 274 (1082)
T PLN02672 199 D----NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM 274 (1082)
T ss_pred c----cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence 0 1236999999731 10 1 0 011123477888899999999999
Q ss_pred EEEeCC
Q 017369 203 IGTMPD 208 (372)
Q Consensus 203 i~~~~~ 208 (372)
++.+..
T Consensus 275 ~lEiG~ 280 (1082)
T PLN02672 275 IFNMGG 280 (1082)
T ss_pred EEEECc
Confidence 998854
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-07 Score=86.65 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred hhcCccccchhhhHHHHHHHHHHh---C--CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCC
Q 017369 58 REASPIIHLKKLNNWIKSVLVQLY---A--RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDA 131 (372)
Q Consensus 58 r~~s~~~~~~~~~~~~k~~l~~~~---~--~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~ 131 (372)
+--.++-.--.|-.|+..+|.... + .++.+|||||||+|.+...++.. ...+++|+|+++.+++.|++++..
T Consensus 83 ~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~-- 160 (321)
T PRK11727 83 YLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA-- 160 (321)
T ss_pred CcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh--
Confidence 333444333455566666654321 1 24689999999999777666543 345799999999999999999874
Q ss_pred ccccccc-CCCcCeEEEE-CcCcccccccccCCCCCeeEEEeccccc
Q 017369 132 DHHQRRK-KFSFPARLIC-GDCYEVHLDKVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 132 ~~~~~~~-~~~~~~~~~~-~D~~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (372)
+ ++..++.+.+ .|..... .....+.+.||+|+|+--++
T Consensus 161 ------Np~l~~~I~~~~~~~~~~i~-~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 161 ------NPGLNGAIRLRLQKDSKAIF-KGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred ------ccCCcCcEEEEEccchhhhh-hcccccCCceEEEEeCCCCc
Confidence 3 3555677754 3333221 11111356899999997665
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.5e-08 Score=87.57 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=97.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc----------c---------cccCCCcCe
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH----------Q---------RRKKFSFPA 144 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----------~---------~~~~~~~~~ 144 (372)
.+.++||||||+-..-..-+......++..|.++..++..++-+++.+.-. . ....+...+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 467999999998543222222345579999999999998877665431100 0 000111123
Q ss_pred -EEEECcCcccc-cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCC
Q 017369 145 -RLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGL 222 (372)
Q Consensus 145 -~~~~~D~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~ 222 (372)
.++..|+.+.+ +......+.+||+|++.+++..+..+.+....+++++.++|||||.|++...
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~--------------- 200 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV--------------- 200 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE---------------
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE---------------
Confidence 36677886643 2110001235999999999999988999999999999999999999887542
Q ss_pred ccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 223 AIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 223 ~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.+...|.+. .. .++..-++.+.+++.++++||.++...
T Consensus 201 -l~~t~Y~vG-----------------~~---------~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 201 -LGSTYYMVG-----------------GH---------KFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -SS-SEEEET-----------------TE---------EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred -cCceeEEEC-----------------CE---------ecccccCCHHHHHHHHHHcCCEEEecc
Confidence 111223220 00 011135567789999999999998775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=91.73 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..++..+...++.+|||+|||+|.++..++.... +|+|+|+++.|++.++++.. ..+++++++|+
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~------------~~~v~~i~~D~ 96 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA------------EDNLTIIEGDA 96 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc------------cCceEEEEChh
Confidence 345555555667889999999999999999887754 89999999999999988764 23699999999
Q ss_pred cccccccccCCCCCeeEEEeccc
Q 017369 152 YEVHLDKVLADDAPFDICSCQFA 174 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~ 174 (372)
.+.++ ++-.+|.|+++.-
T Consensus 97 ~~~~~-----~~~~~~~vv~NlP 114 (272)
T PRK00274 97 LKVDL-----SELQPLKVVANLP 114 (272)
T ss_pred hcCCH-----HHcCcceEEEeCC
Confidence 88765 2212588887654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-08 Score=87.97 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=81.3
Q ss_pred CCEEEEecCCcccc----HHHHHHcC------CCEEEEEeCChHHHHHHHHHhcC-CCc------c-------------c
Q 017369 85 GDVVLDLACGKGGD----LIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNG-DAD------H-------------H 134 (372)
Q Consensus 85 ~~~VLDlGcG~G~~----~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~-~~~------~-------------~ 134 (372)
.-+|+-.||++|.= +..+.+.. .-+|+|+|||..+|+.|+.-.-. ... . .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 67999999999982 22222222 23699999999999999763211 000 0 0
Q ss_pred ccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 135 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+-...+...|.|...|+...+. ..+.||+|+|-++|.|+ +.+...+++..++..|+|||+|++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-----~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-----FLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-----ccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 0011223357778888876552 24789999999999998 7788999999999999999998764
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.8e-08 Score=87.75 Aligned_cols=108 Identities=13% Similarity=0.167 Sum_probs=83.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
..+..+|||+|||+|..+..++.. ..+.++.+|.+++..+.|++.++. .++..+++++.+|+.+.- ...
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~--------aGl~~~I~li~GdA~e~L-~~l 186 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL--------AGVSHKVNVKHGLAAESL-KSM 186 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEEcCHHHHH-HHH
Confidence 346789999999999988888764 245799999999999999999975 556678999999987631 110
Q ss_pred c--CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 160 L--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ...++||+|+.... ......+++.+.++|+|||.+++.
T Consensus 187 ~~~~~~~~FD~VFIDa~-------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 187 IQNGEGSSYDFAFVDAD-------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HhcccCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 0 01368999987543 356778899999999999998875
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-08 Score=95.79 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHhCC-----CCCEEEEecCCccccHHHHHHcC-----CCEEEEEeCChHHHHHHHHHhcCCCccccccc
Q 017369 69 LNNWIKSVLVQLYAR-----RGDVVLDLACGKGGDLIKWDKAK-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK 138 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~-----~~~~VLDlGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~ 138 (372)
+...+...+...... .+..|||+|||+|.++...+.+. ..+|++||-++.++...+++... .
T Consensus 166 Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~--------n 237 (448)
T PF05185_consen 166 YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA--------N 237 (448)
T ss_dssp HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh--------c
Confidence 333444444444333 25789999999998877666543 45899999999988887776442 4
Q ss_pred CCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 139 KFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 139 ~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
++..+|+++++|+++... +.++|+|++-..=.. ... +-....|....+.|||||.++
T Consensus 238 ~w~~~V~vi~~d~r~v~l------pekvDIIVSElLGsf-g~n-El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 238 GWGDKVTVIHGDMREVEL------PEKVDIIVSELLGSF-GDN-ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTTTEEEEES-TTTSCH------SS-EEEEEE---BTT-BTT-TSHHHHHHHGGGGEEEEEEEE
T ss_pred CCCCeEEEEeCcccCCCC------CCceeEEEEeccCCc-ccc-ccCHHHHHHHHhhcCCCCEEe
Confidence 567789999999999876 359999998542211 122 234457888899999999987
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.7e-07 Score=80.35 Aligned_cols=126 Identities=21% Similarity=0.194 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhC-----CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc-----------
Q 017369 71 NWIKSVLVQLYA-----RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH----------- 134 (372)
Q Consensus 71 ~~~k~~l~~~~~-----~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----------- 134 (372)
.++...|..... ....+||-.|||-|+++.+++..+. .+.|.|.|--|+-...-.+.......
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 344444454443 2457999999999999999998766 79999999999766554433210000
Q ss_pred --------c-cc-----------cCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 135 --------Q-RR-----------KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 135 --------~-~~-----------~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
+ +. .....+.....||+.+....+. ..+.||+|++.|.+ ++..++...|+.|.+
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~--~~~~~d~VvT~FFI----DTA~Ni~~Yi~tI~~ 190 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDE--NKGSFDVVVTCFFI----DTAENIIEYIETIEH 190 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcc--cCCcccEEEEEEEe----echHHHHHHHHHHHH
Confidence 0 00 0112245555666655432100 13799999887544 567899999999999
Q ss_pred hcCCCcEEE
Q 017369 195 LLRPGGTFI 203 (372)
Q Consensus 195 ~LkpgG~li 203 (372)
+|||||+.|
T Consensus 191 lLkpgG~WI 199 (270)
T PF07942_consen 191 LLKPGGYWI 199 (270)
T ss_pred HhccCCEEE
Confidence 999999665
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=84.80 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe-EEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA-RLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++..++..+..+|+|+|+++.|+........ ++ .+...|+......+...
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~--------------~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE--------------RVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC--------------CeeEeecCCcccCCHhHcCC
Confidence 3678999999999999999988877789999999988876222111 12 23333444322211110
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.-..+|+++++.. ..+..+.+.|+| |.+++-+
T Consensus 140 d~~~~DvsfiS~~------------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 140 DFATFDVSFISLI------------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CceeeeEEEeehH------------hHHHHHHHHhCc-CeEEEEc
Confidence 1135676655433 357889999999 7765443
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.1e-08 Score=84.98 Aligned_cols=107 Identities=23% Similarity=0.269 Sum_probs=81.4
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--cccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV 159 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~ 159 (372)
...+||||||++|.-+..++.. ..++|+.+|++++..+.|++.+.. .++..+++++.+|+.+.- +...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~--------ag~~~~I~~~~gda~~~l~~l~~~ 116 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK--------AGLDDRIEVIEGDALEVLPELAND 116 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH--------TTGGGGEEEEES-HHHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh--------cCCCCcEEEEEeccHhhHHHHHhc
Confidence 5579999999999988888864 356999999999999999998874 455668999999997531 1100
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
. +.++||+|+....- .+...++..+.++|+|||.+++.-
T Consensus 117 ~-~~~~fD~VFiDa~K-------~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 117 G-EEGQFDFVFIDADK-------RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp T-TTTSEEEEEEESTG-------GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred c-CCCceeEEEEcccc-------cchhhHHHHHhhhccCCeEEEEcc
Confidence 0 23689999986543 345578888889999999998763
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-08 Score=90.50 Aligned_cols=90 Identities=17% Similarity=0.313 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+++..++......++.+|||||||+|.++..++.. ..+|+|+|+++.|++.+++++.. .+...+++++++|
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~--------~~~~~~v~ii~~D 93 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQN--------SPLASKLEVIEGD 93 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHh--------cCCCCcEEEEECC
Confidence 45566666666778899999999999999888765 45799999999999999998763 1223479999999
Q ss_pred CcccccccccCCCCCeeEEEeccccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (372)
+.+.++ ..||+|+++.-.+
T Consensus 94 al~~~~-------~~~d~VvaNlPY~ 112 (294)
T PTZ00338 94 ALKTEF-------PYFDVCVANVPYQ 112 (294)
T ss_pred Hhhhcc-------cccCEEEecCCcc
Confidence 987654 4689998865443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=83.22 Aligned_cols=106 Identities=23% Similarity=0.251 Sum_probs=83.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEE-CcCccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~ 158 (372)
..+..+|||||.+.|.-+..++.. + .++++.+|+++++.+.|++++.+ .++..++..+. +|+.+.-..
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~--------ag~~~~i~~~~~gdal~~l~~- 127 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE--------AGVDDRIELLLGGDALDVLSR- 127 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH--------cCCcceEEEEecCcHHHHHHh-
Confidence 357789999999999887777764 2 46899999999999999999985 56677788888 587653321
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ..++||+|+.... ..+...++..+.++|+|||.+++.
T Consensus 128 -~-~~~~fDliFIDad-------K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 -L-LDGSFDLVFIDAD-------KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred -c-cCCCccEEEEeCC-------hhhCHHHHHHHHHHhCCCcEEEEe
Confidence 1 3589999986543 355678999999999999999875
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-08 Score=89.96 Aligned_cols=133 Identities=24% Similarity=0.383 Sum_probs=95.5
Q ss_pred chhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEE
Q 017369 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVG 112 (372)
Q Consensus 33 ~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~g 112 (372)
++..-++++++|.|+++.....+ ..++.++... ..+..++|+|||.|..+.. .+...++|
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~W---------------p~v~qfl~~~--~~gsv~~d~gCGngky~~~---~p~~~~ig 70 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPW---------------PMVRQFLDSQ--PTGSVGLDVGCGNGKYLGV---NPLCLIIG 70 (293)
T ss_pred HHHhHHHHHHhhhhccccccCcc---------------HHHHHHHhcc--CCcceeeecccCCcccCcC---CCcceeee
Confidence 33344577777777553222211 1133333332 4589999999999965432 24457999
Q ss_pred EeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHH
Q 017369 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (372)
Q Consensus 113 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i 192 (372)
.|++...+.-|+.... .....+|+..+|+ .+.+||.+++..++||+ .+......+++++
T Consensus 71 ~D~c~~l~~~ak~~~~---------------~~~~~ad~l~~p~-----~~~s~d~~lsiavihhl-sT~~RR~~~l~e~ 129 (293)
T KOG1331|consen 71 CDLCTGLLGGAKRSGG---------------DNVCRADALKLPF-----REESFDAALSIAVIHHL-STRERRERALEEL 129 (293)
T ss_pred cchhhhhccccccCCC---------------ceeehhhhhcCCC-----CCCccccchhhhhhhhh-hhHHHHHHHHHHH
Confidence 9999988887765321 2567889999988 78899999999999996 5667788999999
Q ss_pred HHhcCCCcEEEEEe
Q 017369 193 SALLRPGGTFIGTM 206 (372)
Q Consensus 193 ~~~LkpgG~li~~~ 206 (372)
.+.|+|||..++.+
T Consensus 130 ~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 130 LRVLRPGGNALVYV 143 (293)
T ss_pred HHHhcCCCceEEEE
Confidence 99999999977765
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=87.08 Aligned_cols=126 Identities=19% Similarity=0.295 Sum_probs=86.0
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+.+|||+.|=||+++...+..+..+|+.||.|..+++.|++++.- +++. .++.|+++|+.+.- .. ..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l--------Ng~~~~~~~~~~~Dvf~~l-~~-~~ 191 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL--------NGLDLDRHRFIQGDVFKFL-KR-LK 191 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH--------TT-CCTCEEEEES-HHHHH-HH-HH
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCccceEEEecCHHHHH-HH-Hh
Confidence 46889999999999999998887777899999999999999999863 3333 47899999997632 11 11
Q ss_pred CCCCeeEEEeccc-c-cccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC----hHHHHHHHhh
Q 017369 162 DDAPFDICSCQFA-M-HYSWSTEARARRALANVSALLRPGGTFIGTMPD----ANVIIKKLRE 218 (372)
Q Consensus 162 ~~~~fD~V~~~~~-l-~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~----~~~~~~~l~~ 218 (372)
..++||+|++.-- + .--+.-..+...++..+.++|+|||.+++.+-. .+.+.+.+.+
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE 254 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence 2468999999521 0 001122357788999999999999998766533 3444554443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=81.49 Aligned_cols=111 Identities=8% Similarity=-0.085 Sum_probs=77.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||++||+|.++.+++..+...|+++|.++.+++.+++++.. .++..++.++++|+.+.- .......
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~--------~~~~~~~~~~~~D~~~~l-~~~~~~~ 119 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLAL--------LKSGEQAEVVRNSALRAL-KFLAKKP 119 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCcccEEEEehhHHHHH-HHhhccC
Confidence 5789999999999999999988877899999999999999998764 233346889999985431 1000012
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHH--HhcCCCcEEEEEeCC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPD 208 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~li~~~~~ 208 (372)
..||+|+..--... .....++..+. ..|+++|.+++..+.
T Consensus 120 ~~~dvv~~DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 120 TFDNVIYLDPPFFN-----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCceEEEECcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 24788887543322 11233344443 478999999887654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.8e-08 Score=81.76 Aligned_cols=115 Identities=19% Similarity=0.128 Sum_probs=73.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...++.+|||||||+|..++.++.. +...|+..|..+ .++.++.+....+ .....++.+...|-.+....+.
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~------~~~~~~v~v~~L~Wg~~~~~~~ 114 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG------SLLDGRVSVRPLDWGDELDSDL 114 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------------EEEE--TTS-HHHHH
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc------ccccccccCcEEEecCcccccc
Confidence 3457889999999999888877776 567899999999 8998888876421 0124467777766544211111
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ...+||+|++.-+++.- .....+++.+.++|+|+|.+++..+
T Consensus 115 ~-~~~~~D~IlasDv~Y~~----~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 115 L-EPHSFDVILASDVLYDE----ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp H-S-SSBSEEEEES--S-G----GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred c-ccccCCEEEEecccchH----HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 1 34689999999998753 6788999999999999998777654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-08 Score=91.57 Aligned_cols=115 Identities=20% Similarity=0.232 Sum_probs=89.0
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.|.+|||+.|=||+++...+..+..+|++||+|...|+.|++++.- +++ ..++.|+++|+.+.- ......
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L--------Ng~~~~~~~~i~~Dvf~~l-~~~~~~ 287 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL--------NGLDGDRHRFIVGDVFKWL-RKAERR 287 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh--------cCCCccceeeehhhHHHHH-HHHHhc
Confidence 3899999999999999999888888999999999999999999874 333 245899999997632 111113
Q ss_pred CCCeeEEEecc-----cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQF-----AMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~-----~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+||+|++.- .=...|.-..+...++..+.++|+|||.+++.+-
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 45999999853 1111134456788999999999999999987763
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-07 Score=77.05 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=91.1
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
.+........+.-|||+|.|||-++..+++.+. ..++.+|.|++.+....+.+. .++++.+|+.
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--------------~~~ii~gda~ 104 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--------------GVNIINGDAF 104 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--------------Cccccccchh
Confidence 344445667788999999999999999998644 469999999999999998886 3668999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++...-....+..||.|+|..-+-.+ +.....++|+.+...|.+||.++--+
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~--P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNF--PMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccC--cHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 76621112256789999998876665 45667889999999999999987544
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9e-08 Score=83.03 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=84.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
++.+.+|||.|.|-|..++..++.+..+|+-++.++..++.|.-+-=.. .-....++++.+|+.+.-- .+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr-------~l~~~~i~iilGD~~e~V~--~~- 201 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR-------ELFEIAIKIILGDAYEVVK--DF- 201 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc-------cccccccEEecccHHHHHh--cC-
Confidence 4569999999999999999999888889999999999999886542110 1122368999999976421 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++.+||+|+-.--=.- ...+--...+.++++++|||||.++--+.++
T Consensus 202 ~D~sfDaIiHDPPRfS-~AgeLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 202 DDESFDAIIHDPPRFS-LAGELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred CccccceEeeCCCccc-hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 6789999986421000 0022345689999999999999997555433
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-07 Score=84.29 Aligned_cols=87 Identities=22% Similarity=0.188 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+++..++......++.+|||+|||+|.++..++.... .|+++|+++.+++.++.+... ..++.++++|
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-----------~~~v~v~~~D 83 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-----------YERLEVIEGD 83 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-----------CCcEEEEECc
Confidence 4556666666667889999999999999999887654 799999999999999887642 3468999999
Q ss_pred CcccccccccCCCCCee---EEEeccccc
Q 017369 151 CYEVHLDKVLADDAPFD---ICSCQFAMH 176 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD---~V~~~~~l~ 176 (372)
+.+.++. .+| +|+++...+
T Consensus 84 ~~~~~~~-------~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 84 ALKVDLP-------DFPKQLKVVSNLPYN 105 (253)
T ss_pred hhcCChh-------HcCCcceEEEcCChh
Confidence 9887652 355 777665543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=90.84 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=78.2
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+...++.+|||+|||+|.++..++.. ..+|+|+|+++.|++.|++++.. .++ .+++++++|+.+.. ...
T Consensus 288 l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~--------~~~-~nv~~~~~d~~~~l-~~~ 356 (431)
T TIGR00479 288 LELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAEL--------NGI-ANVEFLAGTLETVL-PKQ 356 (431)
T ss_pred hccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHH--------hCC-CceEEEeCCHHHHH-HHH
Confidence 34456789999999999999998764 45899999999999999998763 222 37999999986531 110
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHH
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 213 (372)
...+.+||+|++.-.-.-+ ...+++.+. .++|++.++++. ++..+.
T Consensus 357 ~~~~~~~D~vi~dPPr~G~------~~~~l~~l~-~l~~~~ivyvsc-~p~tla 402 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKGC------AAEVLRTII-ELKPERIVYVSC-NPATLA 402 (431)
T ss_pred HhcCCCCCEEEECcCCCCC------CHHHHHHHH-hcCCCEEEEEcC-CHHHHH
Confidence 0024579999875432111 234555544 388988777765 344443
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=88.77 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=78.8
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++... ..|+|+|+++.+++.|+++... .++ .++.|+++|+.+.... .
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~--------~~~-~~~~~~~~d~~~~~~~----~ 297 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQM--------LGL-DNLSFAALDSAKFATA----Q 297 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEECCHHHHHHh----c
Confidence 356799999999999999888644 5899999999999999998864 222 2799999999654311 1
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
...||+|++.---..+ ...+++.+. .++|++.++++. ++..+...+.
T Consensus 298 ~~~~D~vi~DPPr~G~------~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~ 344 (374)
T TIGR02085 298 MSAPELVLVNPPRRGI------GKELCDYLS-QMAPKFILYSSC-NAQTMAKDIA 344 (374)
T ss_pred CCCCCEEEECCCCCCC------cHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHH
Confidence 2469999886542221 224444444 478988887776 4444444443
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-07 Score=79.07 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=101.3
Q ss_pred chhhhHHHHHHHHHHhC-CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 66 LKKLNNWIKSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 66 ~~~~~~~~k~~l~~~~~-~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
-+....|++........ ....++|||||=+......- .+.-.|+.||+.+. .-
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~------------------------~~ 85 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ------------------------HP 85 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCC------------------------CC
Confidence 35566776666543321 12479999999755433321 22225999999761 12
Q ss_pred EEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcE-----EEEEeCChHHHHHHHhhh
Q 017369 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-----FIGTMPDANVIIKKLREV 219 (372)
Q Consensus 145 ~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~-----li~~~~~~~~~~~~l~~~ 219 (372)
.+.+.|+.+.|++.. +.+.||+|+++.+|.|+. +....-.+++.+++.|+|+|. +++.+|.+- +.+
T Consensus 86 ~I~qqDFm~rplp~~--~~e~FdvIs~SLVLNfVP-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-v~N----- 156 (219)
T PF11968_consen 86 GILQQDFMERPLPKN--ESEKFDVISLSLVLNFVP-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-VTN----- 156 (219)
T ss_pred CceeeccccCCCCCC--cccceeEEEEEEEEeeCC-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-hhc-----
Confidence 347788888776422 457999999999999974 457788999999999999999 999988873 110
Q ss_pred cCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 220 EGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 220 ~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
+ .+.+.+.|..+++..||..+..+
T Consensus 157 ---------------------------------------S-----Ry~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 157 ---------------------------------------S-----RYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred ---------------------------------------c-----cccCHHHHHHHHHhCCcEEEEEE
Confidence 0 15566789999999999998775
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=84.05 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=85.1
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.++.+..--.+..|||+|||+|.++...+.++..+|++++.| +|.+.|++.... +.+..++.++.+-+++.
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~--------N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVAS--------NNLADRITVIPGKIEDI 238 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhc--------CCccceEEEccCccccc
Confidence 344433333678999999999988888777888899999976 499999998875 45567899999999888
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+ +++.|+|++-- +-|++-++.-++..+ .+++.|+|.|.++-|+
T Consensus 239 eL------PEk~DviISEP-MG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 239 EL------PEKVDVIISEP-MGYMLVNERMLESYL-HARKWLKPNGKMFPTV 282 (517)
T ss_pred cC------chhccEEEecc-chhhhhhHHHHHHHH-HHHhhcCCCCcccCcc
Confidence 76 47899998743 334433443333333 4569999999988655
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=81.14 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+.||+|.++.+.+.++..+|+.||.++..+...+++++.. +...++..+..|+...-... ....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l--------~~~~~~~v~~~d~~~~l~~~-~~~~ 112 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKL--------GLEDKIRVIKGDAFKFLLKL-AKKG 112 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH--------T-GGGEEEEESSHHHHHHHH-HHCT
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHh--------CCCcceeeeccCHHHHHHhh-cccC
Confidence 68999999999999999999999999999999999999999998742 22346888999865422111 0035
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHH--HhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~li~~~~~~ 209 (372)
.+||+|++.--...- .....++..+. ..|+++|.+++.....
T Consensus 113 ~~fDiIflDPPY~~~----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 113 EKFDIIFLDPPYAKG----LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp S-EEEEEE--STTSC----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCceEEEECCCcccc----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 789999987554321 11366777776 7899999999887544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.57 E-value=4e-07 Score=79.34 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=71.1
Q ss_pred CCCCCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||+.||-|.+++.++. .....|+++|++|.+++.++++... +++...+..+++|+.++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l--------Nkv~~~i~~~~~D~~~~~----- 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL--------NKVENRIEVINGDAREFL----- 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH--------TT-TTTEEEEES-GGG-------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH--------cCCCCeEEEEcCCHHHhc-----
Confidence 57899999999999999999987 3555799999999999999998874 566778999999998765
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~l 202 (372)
+.+.||.|++..--. ...+|..+.+++++||.+
T Consensus 166 -~~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 166 -PEGKFDRVIMNLPES--------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEE
T ss_pred -CccccCEEEECChHH--------HHHHHHHHHHHhcCCcEE
Confidence 357899998865322 225778889999999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.7e-07 Score=80.59 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=82.2
Q ss_pred CCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+..+|||||+++|.-+..++.. ..++++.+|++++..+.|++.+.. .++..+++++.+|+.+.- ....
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~--------ag~~~~I~~~~G~a~e~L-~~l~ 148 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK--------AGVAHKIDFREGPALPVL-DQMI 148 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH--------CCCCCceEEEeccHHHHH-HHHH
Confidence 35679999999999888877654 346899999999999999999875 566778999999987631 1110
Q ss_pred C---CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 161 A---DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 ~---~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ..++||+|+.... .......++.+.++|+|||.+++.
T Consensus 149 ~~~~~~~~fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred hccccCCcccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 0 1368999987643 345667888889999999998864
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.9e-07 Score=76.84 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=79.5
Q ss_pred CCCCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCcccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~ 157 (372)
+.|+.+.||+|.|+|.++..+.. .....++|||.-++.++.+++++...-.+......+ ..++.++++|.....-
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~- 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA- 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC-
Confidence 68999999999999998877664 223345999999999999999886421100000111 2367888999987554
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+..+||.|.|..+.. +..+++...|+|||.+++-.
T Consensus 159 ----e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 159 ----EQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ----ccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEee
Confidence 568999999875432 45677888999999988654
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-07 Score=83.83 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=75.0
Q ss_pred hCCCCCEEEEecCCccccHHHHHH--------cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDK--------AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~--------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++.+|||.+||+|.++..+.. .....++|+|+++.++..|+-++.-.+.. .....+..+|..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~-------~~~~~i~~~d~l 115 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID-------NSNINIIQGDSL 115 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-------CBGCEEEES-TT
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-------cccccccccccc
Confidence 556777999999999999888765 24557999999999999998765321110 112457888876
Q ss_pred ccccccccCCCCCeeEEEeccccccc-C----------------CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYS-W----------------STEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~-~----------------~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..+... ....||+|+++--+-.. + .....--.++..+.+.|++||++.+.+|+.
T Consensus 116 ~~~~~~---~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 116 ENDKFI---KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp TSHSCT---ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccc---cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 544310 14689999997422111 0 001122358899999999999988888754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=77.37 Aligned_cols=85 Identities=24% Similarity=0.345 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+.+++....+++.+.|||+|.|||.++..+++.+. .|+++++++.|+.+..++..+. ......+++++|..
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gt--------p~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGT--------PKSGKLQVLHGDFL 117 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCC--------CccceeeEEecccc
Confidence 34455566778999999999999999999987654 8999999999999999998752 22467899999998
Q ss_pred ccccccccCCCCCeeEEEecc
Q 017369 153 EVHLDKVLADDAPFDICSCQF 173 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~ 173 (372)
..++ ..||.++++.
T Consensus 118 K~d~-------P~fd~cVsNl 131 (315)
T KOG0820|consen 118 KTDL-------PRFDGCVSNL 131 (315)
T ss_pred cCCC-------cccceeeccC
Confidence 7665 5799999854
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=79.91 Aligned_cols=131 Identities=16% Similarity=0.121 Sum_probs=91.3
Q ss_pred hhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE
Q 017369 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (372)
Q Consensus 68 ~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (372)
.++.|+.......+..+ .+||-||.|.|+.+.++++.. ..+++.|||++..++.|++.+..... .....++++
T Consensus 61 ~yhEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~-----~~~dpRv~i 134 (282)
T COG0421 61 IYHEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSG-----GADDPRVEI 134 (282)
T ss_pred HHHHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccc-----ccCCCceEE
Confidence 34455544444444445 699999999999999999875 56799999999999999999874321 111478999
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+..|..+.--. ...+||+|++...=.--....---..+++.+.+.|+++|.++...-+
T Consensus 135 ~i~Dg~~~v~~----~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 135 IIDDGVEFLRD----CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EeccHHHHHHh----CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 99998764321 23489999986532200000001258999999999999999987543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=82.21 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=80.2
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
...+||.||+|.|..+..+++. ...+++.||+++.+++.|++.+..... .--..+++++.+|+...--. .
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~-----~~~dprv~v~~~Da~~~L~~----~ 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE-----AFCDKRLELIINDARAELEK----R 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc-----cccCCceEEEEChhHHHHhh----C
Confidence 4578999999999999888875 356799999999999999998753110 01146899999999764211 3
Q ss_pred CCCeeEEEecccccccCCCH--HHHHHHHH-HHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTE--ARARRALA-NVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~--~~~~~~l~-~i~~~LkpgG~li~~~ 206 (372)
.++||+|++...-...-... ---..+++ .+.+.|+|||++++..
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 46899999874211000000 01246787 8999999999988754
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.9e-07 Score=78.71 Aligned_cols=128 Identities=21% Similarity=0.213 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
..+..++....+.++...+|||||.|......+. .+....+|||+.+...+.|...................++.+..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 4456677777788999999999999998766554 466679999999998887765433111000000011346788899
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
|+.+.++...+ -...|+|+++.... + ++....|.++...||+|-++|.+
T Consensus 109 dfl~~~~~~~~--~s~AdvVf~Nn~~F---~--~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 109 DFLDPDFVKDI--WSDADVVFVNNTCF---D--PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -TTTHHHHHHH--GHC-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CccccHhHhhh--hcCCCEEEEecccc---C--HHHHHHHHHHHhcCCCCCEEEEC
Confidence 98765432111 14589999987653 2 56777788888999998877643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=85.96 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=82.4
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+|||+|||.|+=+..++.. +.+.++++|+++.-++.++++++..+ + .++.+.+.|...+.-
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G--------~-~nv~v~~~D~~~~~~-- 178 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG--------V-SNVALTHFDGRVFGA-- 178 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC--------C-CeEEEEeCchhhhhh--
Confidence 4578999999999999988888764 34689999999999999999887532 2 357788888765431
Q ss_pred ccCCCCCeeEEEe----cc--cccccCC-----CHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSC----QF--AMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~----~~--~l~~~~~-----~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ..+.||.|++ +. ++..-.+ +.+ -..++|.++.+.|||||+++.+|-
T Consensus 179 ~--~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 179 A--LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred h--chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 1 2357999994 32 2211000 111 237889999999999999988774
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-07 Score=78.72 Aligned_cols=115 Identities=25% Similarity=0.278 Sum_probs=68.8
Q ss_pred CCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc----
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---- 157 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~---- 157 (372)
++.+|||+||++|+++..++... ...|+|+|+.+. .. ...+.++++|+.+....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-----------~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-----------LQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS------------TTEEBTTGGGEEEEHSHHGG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-----------ccceeeeecccchhhHHHhhh
Confidence 35899999999999999998876 567999999874 00 12466667776543211
Q ss_pred cccC-CCCCeeEEEeccccccc----CC---CHHHHHHHHHHHHHhcCCCcEEEEEeCCh---HHHHHHHhh
Q 017369 158 KVLA-DDAPFDICSCQFAMHYS----WS---TEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLRE 218 (372)
Q Consensus 158 ~~~~-~~~~fD~V~~~~~l~~~----~~---~~~~~~~~l~~i~~~LkpgG~li~~~~~~---~~~~~~l~~ 218 (372)
.... ....||+|+|..+.... .+ ...-....+.-+...|+|||.+++.+-.. ..++..+..
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~ 154 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR 154 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence 1110 12689999998732211 00 11234455556667899999988876332 345554443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.9e-07 Score=82.84 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
++.++..+.+.++..+||.+||.|+++..++... .+.|+|+|.++.|++.|++++.. ..++.++++|
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----------~~ri~~i~~~ 76 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----------FGRFTLVHGN 76 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----------CCcEEEEeCC
Confidence 4556666667788999999999999999999864 46899999999999999988752 3469999999
Q ss_pred CcccccccccCC-CCCeeEEEecccc
Q 017369 151 CYEVHLDKVLAD-DAPFDICSCQFAM 175 (372)
Q Consensus 151 ~~~~~~~~~~~~-~~~fD~V~~~~~l 175 (372)
+.++... ... -.++|.|++....
T Consensus 77 f~~l~~~--l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 77 FSNLKEV--LAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHH--HHcCCCccCEEEECCCc
Confidence 9875421 101 1279999987644
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-07 Score=75.09 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
-.|.+++|+|||.|.++......+...|+|+||++++++.+.++.+.. ..++.+.++|+.++.+ .
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf----------EvqidlLqcdildle~-----~ 111 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF----------EVQIDLLQCDILDLEL-----K 111 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh----------hhhhheeeeeccchhc-----c
Confidence 368899999999998776665556667999999999999999887642 3357889999987766 5
Q ss_pred CCCeeEEEeccc
Q 017369 163 DAPFDICSCQFA 174 (372)
Q Consensus 163 ~~~fD~V~~~~~ 174 (372)
.+.||.++.+--
T Consensus 112 ~g~fDtaviNpp 123 (185)
T KOG3420|consen 112 GGIFDTAVINPP 123 (185)
T ss_pred CCeEeeEEecCC
Confidence 689999998753
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-06 Score=66.60 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=68.0
Q ss_pred CCCEEEEecCCccc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||.|. ++..+.+. ...|+++|+++..++.|++.. +.++++|+.+..+. .
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~~----------------~~~v~dDlf~p~~~----~ 74 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKLG----------------LNAFVDDLFNPNLE----I 74 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhC----------------CeEEECcCCCCCHH----H
Confidence 46789999999996 66666554 448999999999999887653 57899999876542 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
-..+|+|.+.. ...++...+.++++.+. .-+++..-..
T Consensus 75 y~~a~liysir-------pp~el~~~~~~la~~~~--~~~~i~~l~~ 112 (134)
T PRK04148 75 YKNAKLIYSIR-------PPRDLQPFILELAKKIN--VPLIIKPLSG 112 (134)
T ss_pred HhcCCEEEEeC-------CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 36799997543 33566667777777654 3455554333
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.2e-07 Score=85.51 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=89.9
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+.++..++|+|||-|.............++|+|.++..+..+...... ..+.....+..+|+...++
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~--------~~l~~k~~~~~~~~~~~~f---- 174 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK--------AYLDNKCNFVVADFGKMPF---- 174 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH--------HHhhhhcceehhhhhcCCC----
Confidence 4567889999999999999888777777899999999888877665543 2233455668889888888
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+++.||.+.+.-+..|. .+...+++++.++++|||+++..
T Consensus 175 -edn~fd~v~~ld~~~~~----~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 175 -EDNTFDGVRFLEVVCHA----PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -CccccCcEEEEeecccC----CcHHHHHHHHhcccCCCceEEeH
Confidence 78999999999999998 77889999999999999998764
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=84.93 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=87.2
Q ss_pred CCCEEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+..+||||||.|.++..++...+. .++|+|++...+..|.++... .+ ..|+.+++.|+..+. ..+ +
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~--------~~-l~N~~~~~~~~~~~~--~~~-~ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE--------QN-ITNFLLFPNNLDLIL--NDL-P 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--------cC-CCeEEEEcCCHHHHH--Hhc-C
Confidence 4678999999999999999887554 599999999988888777653 22 236788888764322 112 6
Q ss_pred CCCeeEEEecccccccC----CCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 163 DAPFDICSCQFAMHYSW----STEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~----~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
++++|.|+.+|.=-|-- ...---..+++.+++.|+|||.+.+.|-+.+.....
T Consensus 415 ~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~ 471 (506)
T PRK01544 415 NNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEA 471 (506)
T ss_pred cccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 78899999887544320 000012578999999999999999998877665443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.6e-06 Score=86.07 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=84.0
Q ss_pred CCCCEEEEecCCccccHHHHHHc-------------------------------------------CCCEEEEEeCChHH
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-------------------------------------------KIGYYVGIDIAEGS 119 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-------------------------------------------~~~~v~gvD~s~~~ 119 (372)
.++..++|.+||+|.++++.+.. ....++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 56789999999999999887541 01258999999999
Q ss_pred HHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcC--
Q 017369 120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR-- 197 (372)
Q Consensus 120 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-- 197 (372)
++.|+.++.. .++...+.+.++|+.+++... ..+.||+|+++--..--.....+...+...+.+.|+
T Consensus 269 v~~A~~N~~~--------~g~~~~i~~~~~D~~~~~~~~---~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 269 IQAARKNARR--------AGVAELITFEVKDVADLKNPL---PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred HHHHHHHHHH--------cCCCcceEEEeCChhhccccc---ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 9999999874 455567899999998865410 235799999985432222334455555555555554
Q ss_pred -CCcEEEEEeCChH
Q 017369 198 -PGGTFIGTMPDAN 210 (372)
Q Consensus 198 -pgG~li~~~~~~~ 210 (372)
+|+.+++.+++..
T Consensus 338 ~~g~~~~llt~~~~ 351 (702)
T PRK11783 338 FGGWNAALFSSSPE 351 (702)
T ss_pred CCCCeEEEEeCCHH
Confidence 8988888887764
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-06 Score=80.12 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=80.7
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
-...+|+|.|.|..+..++. ...++-|+++....+..++..+. +.++.+-+|+... . .
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-------------~gV~~v~gdmfq~-~-------P 235 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-------------PGVEHVAGDMFQD-T-------P 235 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-------------CCcceeccccccc-C-------C
Confidence 37899999999999999988 55579999999988887776652 1377788888754 3 3
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+-|+|++.+++||. +.++..++|+++...|+|||.+++.-
T Consensus 236 ~~daI~mkWiLhdw--tDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 236 KGDAIWMKWILHDW--TDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred CcCeEEEEeecccC--ChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 45699999999997 66899999999999999999987643
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.4e-07 Score=87.55 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=71.3
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEE--EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYV--GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.++||+|||.|.++..++..+...+. --|..+..++.|.+|.- . .-+-..-...+|+ ++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGv------------p--a~~~~~~s~rLPf-----p~ 179 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGV------------P--AMIGVLGSQRLPF-----PS 179 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCc------------c--hhhhhhccccccC-----Cc
Confidence 46899999999999999887653322 23555667777766632 1 1111222345788 88
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.||+|-|+.++... .. +-..+|-++-|+|+|||+|+.+.|-.
T Consensus 180 ~~fDmvHcsrc~i~W-~~--~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 180 NAFDMVHCSRCLIPW-HP--NDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cchhhhhcccccccc-hh--cccceeehhhhhhccCceEEecCCcc
Confidence 999999999877542 22 22458899999999999999988743
|
; GO: 0008168 methyltransferase activity |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=75.20 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=89.7
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcCC---------------------------------C-------EEEEEeCChH
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------G-------YYVGIDIAEG 118 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------~-------~v~gvD~s~~ 118 (372)
...-.++..++|.-||+|.++++.+.... . .++|+|+++.
T Consensus 186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r 265 (381)
T COG0116 186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR 265 (381)
T ss_pred HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence 33456678999999999999988765321 1 3779999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHH----HHHHHHHHHH
Q 017369 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR----ARRALANVSA 194 (372)
Q Consensus 119 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~----~~~~l~~i~~ 194 (372)
+++.|+.++.. .++...+.|.++|+..+.- +.+.+|+|+|+-----=+.+... ...+.+.+.+
T Consensus 266 ~i~~Ak~NA~~--------AGv~d~I~f~~~d~~~l~~-----~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 266 HIEGAKANARA--------AGVGDLIEFKQADATDLKE-----PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred HHHHHHHHHHh--------cCCCceEEEEEcchhhCCC-----CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 99999999875 6778889999999988764 23789999998521110122222 2345556667
Q ss_pred hcCCCcEEEEEeCChHHHHHHHhh
Q 017369 195 LLRPGGTFIGTMPDANVIIKKLRE 218 (372)
Q Consensus 195 ~LkpgG~li~~~~~~~~~~~~l~~ 218 (372)
.++-.+.+++++...-.....++.
T Consensus 333 ~~~~ws~~v~tt~e~~~~~~~~ra 356 (381)
T COG0116 333 LLAGWSRYVFTTSEDLLFCLGLRA 356 (381)
T ss_pred HhcCCceEEEEccHHHHHHHhhhh
Confidence 777778888887665444444444
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=7e-06 Score=74.47 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=75.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+...+||=+|.|.|+.+.++++... +|+.|||++.+++.|++.+..... .--.++++++.. +.+ . .
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~-----~~~DpRv~l~~~-~~~--~-----~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHE-----VKNNKNFTHAKQ-LLD--L-----D 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHH-----hhcCCCEEEeeh-hhh--c-----c
Confidence 4568999999999999999998764 999999999999999996653211 112446666641 111 0 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++||+|++.... ...+.+.+.++|+|||.++....
T Consensus 137 ~~~fDVIIvDs~~---------~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 137 IKKYDLIICLQEP---------DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CCcCCEEEEcCCC---------ChHHHHHHHHhcCCCcEEEECCC
Confidence 3689999987431 24678999999999999998553
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.4e-06 Score=78.40 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+.+|||++||+|..+..++.. +...|+++|+++.+++.++++++. +++ .++.+.++|+..+.. ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~--------N~~-~~~~v~~~Da~~~l~-----~~ 123 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL--------NGL-ENEKVFNKDANALLH-----EE 123 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCC-CceEEEhhhHHHHHh-----hc
Confidence 468999999999999998764 445899999999999999998863 222 246688999865421 13
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
+.||+|++.-- - + ...++..+.+.+++||++.+|.-|...+
T Consensus 124 ~~fD~V~lDP~--G---s---~~~~l~~al~~~~~~gilyvSAtD~~~L 164 (382)
T PRK04338 124 RKFDVVDIDPF--G---S---PAPFLDSAIRSVKRGGLLCVTATDTAPL 164 (382)
T ss_pred CCCCEEEECCC--C---C---cHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence 57999987531 1 1 3467788778889999999997665544
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.9e-06 Score=74.39 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.+..++....+.++..|||||+|.|.++..+++... .|+++|+++.+++..+++... ..+++++.+|
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~-----------~~n~~vi~~D 84 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP-----------YDNLTVINGD 84 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc-----------ccceEEEeCc
Confidence 4466677777778899999999999999999987655 799999999999999988742 4579999999
Q ss_pred CcccccccccCCCCCeeEEEeccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFA 174 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~ 174 (372)
+...++... ..++.|+++.-
T Consensus 85 aLk~d~~~l----~~~~~vVaNlP 104 (259)
T COG0030 85 ALKFDFPSL----AQPYKVVANLP 104 (259)
T ss_pred hhcCcchhh----cCCCEEEEcCC
Confidence 998887311 16788887644
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-06 Score=77.62 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=79.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+...+||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+..... ..-..+++++.+|+...--.
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~-----~~~d~r~~i~~~Dg~~~l~~--- 145 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE-----GLDDPRVRIIIGDGRKFLKE--- 145 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT-----TGGSTTEEEEESTHHHHHHT---
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc-----ccCCCceEEEEhhhHHHHHh---
Confidence 3467899999999999999988765 56899999999999999987652110 01245899999998753321
Q ss_pred CCCC-CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~-~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+ +||+|+....-.......---..+++.+.+.|+|||.++...
T Consensus 146 -~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 146 -TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp -SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 234 899999854321100000012579999999999999999765
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=65.62 Aligned_cols=101 Identities=24% Similarity=0.423 Sum_probs=70.1
Q ss_pred EEEecCCccccHHHHHHcCC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC-eEEEECcCcc--cccccccCC
Q 017369 88 VLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYE--VHLDKVLAD 162 (372)
Q Consensus 88 VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~--~~~~~~~~~ 162 (372)
++|+|||+|... .+..... ..++|+|+++.++..++..... .... +.+..+|... .++ .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-----~ 115 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG----------AGLGLVDFVVADALGGVLPF-----E 115 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh----------cCCCceEEEEeccccCCCCC-----C
Confidence 999999999865 2222222 3789999999999985554421 0111 5778888765 454 3
Q ss_pred C-CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 163 D-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
. ..||++ +.....+... ....+.++.+.|+|+|.+++.....
T Consensus 116 ~~~~~d~~-~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 116 DSASFDLV-ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred CCCceeEE-eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 3 489999 5554444322 6789999999999999998877554
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-05 Score=67.91 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=82.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
-.+.++||+-+|+|.+..+.+.++...++.||.+...+...+++.+.. ++..++.++..|+... +.. ...
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l--------~~~~~~~~~~~da~~~-L~~-~~~ 111 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKAL--------GLEGEARVLRNDALRA-LKQ-LGT 111 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--------CCccceEEEeecHHHH-HHh-cCC
Confidence 368999999999999999999999999999999999999999998642 3345788888888732 111 102
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHH--HHHhcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALAN--VSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~--i~~~LkpgG~li~~~~~~ 209 (372)
.++||+|+..--.+.- .-+....+.. -...|+|+|.+++.....
T Consensus 112 ~~~FDlVflDPPy~~~---l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 112 REPFDLVFLDPPYAKG---LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCcccEEEeCCCCccc---hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2359999987655421 1112233333 456799999999887544
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=77.02 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=71.6
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC---
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA--- 161 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--- 161 (372)
+.+|||++||+|.++..++.. ..+|+|+|+++.+++.|+++... .++ .++.++++|+.+.- .....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~--------~~~-~~v~~~~~d~~~~l-~~~~~~~~ 275 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAA--------NGI-DNVQIIRMSAEEFT-QAMNGVRE 275 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHH--------hCC-CcEEEEECCHHHHH-HHHhhccc
Confidence 357999999999999977654 55899999999999999998763 222 27999999986631 11000
Q ss_pred ---------CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHH
Q 017369 162 ---------DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (372)
Q Consensus 162 ---------~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l 216 (372)
....||+|+..---.-+ ...+++.+.+ |++.++++.. +..+...+
T Consensus 276 ~~~~~~~~~~~~~~D~v~lDPPR~G~------~~~~l~~l~~---~~~ivyvSC~-p~tlarDl 329 (362)
T PRK05031 276 FNRLKGIDLKSYNFSTIFVDPPRAGL------DDETLKLVQA---YERILYISCN-PETLCENL 329 (362)
T ss_pred ccccccccccCCCCCEEEECCCCCCC------cHHHHHHHHc---cCCEEEEEeC-HHHHHHHH
Confidence 01258999875431111 1234444433 6777777663 34444433
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=76.43 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=91.2
Q ss_pred hCCCCC-EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGD-VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~-~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+..+.. ++|-+|||.-.++..+.+.+...|+.+|+|+..++....+... -..-..+...|+..+.+
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~----------~~~~~~~~~~d~~~l~f--- 110 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK----------ERPEMQMVEMDMDQLVF--- 110 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc----------CCcceEEEEecchhccC---
Confidence 445555 9999999999999888888887899999999999888776531 14458889999999988
Q ss_pred cCCCCCeeEEEecccccccCCCHHHH------HHHHHHHHHhcCCCcEEE-EEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARA------RRALANVSALLRPGGTFI-GTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~------~~~l~~i~~~LkpgG~li-~~~ 206 (372)
++++||+|+.-..++++++++... ...+.+++++|++||+++ ++.
T Consensus 111 --edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 111 --EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred --CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 789999999999999887765543 467899999999999865 444
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-06 Score=71.19 Aligned_cols=76 Identities=26% Similarity=0.460 Sum_probs=53.5
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 165 (372)
..|+|+.||.|+.+..+++. ..+|+++|+++..++.|+.+++-+ ++..++.++++|+.+..-. ......
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vY--------Gv~~~I~~i~gD~~~~~~~--~~~~~~ 69 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVY--------GVADNIDFICGDFFELLKR--LKSNKI 69 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHT--------T-GGGEEEEES-HHHHGGG--B-----
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEeCCHHHHHhh--cccccc
Confidence 36999999999999999876 458999999999999999998753 4456899999999875321 101122
Q ss_pred eeEEEec
Q 017369 166 FDICSCQ 172 (372)
Q Consensus 166 fD~V~~~ 172 (372)
+|+|+++
T Consensus 70 ~D~vFlS 76 (163)
T PF09445_consen 70 FDVVFLS 76 (163)
T ss_dssp -SEEEE-
T ss_pred ccEEEEC
Confidence 8999985
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=74.21 Aligned_cols=104 Identities=24% Similarity=0.187 Sum_probs=84.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+|.+|||+-||-|.+++.++..+...|+++|++|.+++.+++++.- +++...+..+++|+.+...
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~L--------N~v~~~v~~i~gD~rev~~----- 252 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRL--------NKVEGRVEPILGDAREVAP----- 252 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHh--------cCccceeeEEeccHHHhhh-----
Confidence 356999999999999999999887766699999999999999999874 4556669999999998764
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.-+.+|-|++...- ....++..+.+.+++||.+-.-.
T Consensus 253 ~~~~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 253 ELGVADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ccccCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEEe
Confidence 23789999876542 23467888888999999876544
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.5e-05 Score=62.41 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=79.1
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+||||||+|..+..+... +...+.++|+++.+++..++-+..+ ..++..++.|+..--
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----------~~~~~~V~tdl~~~l------ 106 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----------RVHIDVVRTDLLSGL------ 106 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----------CCccceeehhHHhhh------
Confidence 3678999999999988887764 3445889999999999877766521 224677888876422
Q ss_pred CCCCeeEEEeccc---------------cccc--CCCHHHHHHHHHHHHHhcCCCcEEEEEeC---ChHHHHHHHh
Q 017369 162 DDAPFDICSCQFA---------------MHYS--WSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLR 217 (372)
Q Consensus 162 ~~~~fD~V~~~~~---------------l~~~--~~~~~~~~~~l~~i~~~LkpgG~li~~~~---~~~~~~~~l~ 217 (372)
..++.|+++.+-- +-|. -+..+-..+++..+-.+|.|.|.|++.+. .+..++..++
T Consensus 107 ~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~ 182 (209)
T KOG3191|consen 107 RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE 182 (209)
T ss_pred ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence 2378888877531 1111 11222356778888899999999887654 3455555443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.7e-05 Score=67.45 Aligned_cols=117 Identities=26% Similarity=0.304 Sum_probs=80.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+.++.+|+|||+-.|+++..+.+.. .+.|+|+|+-| -....++.++++|+...+..+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p--------------------~~~~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP--------------------MKPIPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc--------------------cccCCCceEEeeeccCccHHHH
Confidence 5688999999999999999887742 23499999976 1123459999999987553211
Q ss_pred c---CCCCCeeEEEecccc--------cccCCCHHHHHHHHHHHHHhcCCCcEEEEEe---CChHHHHHHHhhh
Q 017369 160 L---ADDAPFDICSCQFAM--------HYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLREV 219 (372)
Q Consensus 160 ~---~~~~~fD~V~~~~~l--------~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~---~~~~~~~~~l~~~ 219 (372)
+ ....++|+|++..+- .|. ....-...++.-+..+|+|||.|++.+ .+.+.++..++..
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL 175 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh
Confidence 1 134568999986532 222 122234566677778999999998765 4556677766653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=75.59 Aligned_cols=112 Identities=11% Similarity=0.060 Sum_probs=70.9
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc----c-
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV----L- 160 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~----~- 160 (372)
.+|||+|||+|.++..+... ...|+|+|++++|++.|++++.. .++ .++.++++|+.+..-... +
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~--------~~~-~~v~~~~~d~~~~~~~~~~~~~~~ 268 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAA--------NNI-DNVQIIRMSAEEFTQAMNGVREFR 268 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEEcCHHHHHHHHhhccccc
Confidence 47999999999999977654 45899999999999999998863 222 268999999876321000 0
Q ss_pred -CC-----CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 161 -AD-----DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 161 -~~-----~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
.. ...||+|+..--=.-+ ...+++.+. +|++.++++. ++..+...+.
T Consensus 269 ~~~~~~~~~~~~d~v~lDPPR~G~------~~~~l~~l~---~~~~ivYvsC-~p~tlaRDl~ 321 (353)
T TIGR02143 269 RLKGIDLKSYNCSTIFVDPPRAGL------DPDTCKLVQ---AYERILYISC-NPETLKANLE 321 (353)
T ss_pred cccccccccCCCCEEEECCCCCCC------cHHHHHHHH---cCCcEEEEEc-CHHHHHHHHH
Confidence 00 1237998875431110 123444443 3777777766 3344444333
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=76.99 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=80.5
Q ss_pred CCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+.+|||+.||+|..++.++.. +..+|+++|+++.+++.++++++.. +. .++.++++|+...... .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N--------~~-~~~~v~~~Da~~~l~~----~ 111 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN--------SV-ENIEVPNEDAANVLRY----R 111 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh--------CC-CcEEEEchhHHHHHHH----h
Confidence 368999999999999999876 5578999999999999999988632 11 2578899998765321 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
...||+|...- . . .+..++..+.+.+++||.+.+|.-|..
T Consensus 112 ~~~fDvIdlDP-f-G------s~~~fld~al~~~~~~glL~vTaTD~~ 151 (374)
T TIGR00308 112 NRKFHVIDIDP-F-G------TPAPFVDSAIQASAERGLLLVTATDTS 151 (374)
T ss_pred CCCCCEEEeCC-C-C------CcHHHHHHHHHhcccCCEEEEEecccH
Confidence 35799998754 2 1 234788999999999999999854443
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-05 Score=67.49 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=74.3
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
...+.++.+||-+|..+|.....+..- ..+.|++|+.|+......-.-.++ ..|+--+..|+.....
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----------R~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----------RPNIIPILEDARHPEK 136 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----------STTEEEEES-TTSGGG
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----------CCceeeeeccCCChHH
Confidence 356779999999999999988887763 467899999999654443332221 2368889999986432
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
-..+ -+.+|+|++.-+-. ++.+-++.|+...||+||.+++.+
T Consensus 137 Y~~l--v~~VDvI~~DVaQp------~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 137 YRML--VEMVDVIFQDVAQP------DQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp GTTT--S--EEEEEEE-SST------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcc--cccccEEEecCCCh------HHHHHHHHHHHhhccCCcEEEEEE
Confidence 2222 35899999876632 567888999999999999999876
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.1e-05 Score=67.17 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=93.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..++..+.+.||.+|||-|.|+|.++..+++. +.++++-+|+.+.-.+.|++.++. .+++.++.+.+-|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~--------hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE--------HGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH--------hCCCcceEEEEee
Confidence 344566678899999999999999999888774 567999999999888899988875 6678899999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCc-EEEEEeCChHHHHH
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDANVIIK 214 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~li~~~~~~~~~~~ 214 (372)
+....+.. ....+|.|+...--- -.++-.++.+||.+| +|+.-.|+.+.+-.
T Consensus 166 Vc~~GF~~---ks~~aDaVFLDlPaP---------w~AiPha~~~lk~~g~r~csFSPCIEQvqr 218 (314)
T KOG2915|consen 166 VCGSGFLI---KSLKADAVFLDLPAP---------WEAIPHAAKILKDEGGRLCSFSPCIEQVQR 218 (314)
T ss_pred cccCCccc---cccccceEEEcCCCh---------hhhhhhhHHHhhhcCceEEeccHHHHHHHH
Confidence 98766531 256899997654333 345666677888876 56666677665543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.6e-05 Score=77.64 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=52.8
Q ss_pred CCCEEEEecCCccccHHHHHHcC---------CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAK---------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
...+|||.|||+|.++..++... ...++|+|+++.++..|+.++...+ ...+.+.+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~---------~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA---------LLEINVINFNSLSY 101 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC---------CCCceeeecccccc
Confidence 34699999999999998876531 1358999999999999998876321 11234455554322
Q ss_pred ccccccCCCCCeeEEEecc
Q 017369 155 HLDKVLADDAPFDICSCQF 173 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~ 173 (372)
.+.......+.||+|+++-
T Consensus 102 ~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 102 VLLNIESYLDLFDIVITNP 120 (524)
T ss_pred cccccccccCcccEEEeCC
Confidence 1110000135799999974
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.3e-05 Score=65.98 Aligned_cols=108 Identities=17% Similarity=0.081 Sum_probs=73.1
Q ss_pred EEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCe
Q 017369 88 VLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (372)
Q Consensus 88 VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~f 166 (372)
|.|+||-.|.+...++..+.. +++++|+++.-++.|++.... .++..++.+..+|..+. +. +.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~--------~~l~~~i~~rlgdGL~~-l~----~~e~~ 67 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK--------YGLEDRIEVRLGDGLEV-LK----PGEDV 67 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH--------TT-TTTEEEEE-SGGGG-------GGG--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCcccEEEEECCcccc-cC----CCCCC
Confidence 689999999999999987665 499999999999999999875 45567899999997642 21 23347
Q ss_pred eEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 167 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
|.|+...+=- .-...+|.+....++....|++.-.+....+.
T Consensus 68 d~ivIAGMGG------~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR 109 (205)
T PF04816_consen 68 DTIVIAGMGG------ELIIEILEAGPEKLSSAKRLILQPNTHAYELR 109 (205)
T ss_dssp -EEEEEEE-H------HHHHHHHHHTGGGGTT--EEEEEESS-HHHHH
T ss_pred CEEEEecCCH------HHHHHHHHhhHHHhccCCeEEEeCCCChHHHH
Confidence 8887665422 44678888888888776677776554443333
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=60.80 Aligned_cols=108 Identities=24% Similarity=0.268 Sum_probs=70.9
Q ss_pred CCCCCEEEEecCCccccHHHHHH-----cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
..+...|+|+|||.|.++..++. ....+|+|+|.++..++.|..+..... ..+..+..+..++..+..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~- 95 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG------SDLEKRLSFIQGDIADES- 95 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc------chhhccchhhccchhhhc-
Confidence 35678999999999999888877 555689999999999999988876421 112234556665554332
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
.....++++ ++|-. .+ --..+|+.+.+ |+-.+++.+|...
T Consensus 96 -----~~~~~~~~v---gLHaC-G~--Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 96 -----SSDPPDILV---GLHAC-GD--LSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred -----ccCCCeEEE---Eeecc-cc--hHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 235667776 44422 21 12345555544 6767777777763
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00014 Score=62.27 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=79.9
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.+.++++.+||=||..+|........- +.+.++||+.|+.+....-..+.+ ..|+--+.+|+....--
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----------R~Ni~PIL~DA~~P~~Y 139 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----------RPNIIPILEDARKPEKY 139 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----------CCCceeeecccCCcHHh
Confidence 346789999999999999988888774 456799999999877655544432 33577788898753211
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+ -+..|+|++.-+- +.+.+-+..|+..-||+||++++.+
T Consensus 140 ~~~--Ve~VDviy~DVAQ------p~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 140 RHL--VEKVDVIYQDVAQ------PNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred hhh--cccccEEEEecCC------chHHHHHHHHHHHhcccCCeEEEEE
Confidence 111 2569999876543 3567778899999999999887765
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.6e-05 Score=63.96 Aligned_cols=105 Identities=20% Similarity=0.167 Sum_probs=72.3
Q ss_pred CCCCC-EEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGD-VVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~-~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+.... +|+|+|+|.|--...++-. +..+++.+|....-+...+...... + -.+++++++.+++ ..
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L--------~-L~nv~v~~~R~E~-~~--- 111 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL--------G-LSNVEVINGRAEE-PE--- 111 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH--------T--SSEEEEES-HHH-TT---
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh--------C-CCCEEEEEeeecc-cc---
Confidence 33334 8999999999887777654 4457999999987665555444321 1 2369999999987 22
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe-CCh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-PDA 209 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~-~~~ 209 (372)
....||+|++-.+.. +..++.-+...|++||.+++-- ++.
T Consensus 112 --~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 112 --YRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp --TTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred --cCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 468999999876542 5578888999999999876543 443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.1e-05 Score=65.38 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=80.8
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
...++||||.=||.-++.++.. ..++|+++|+++...+.+.+..+. ++...+++++++++.+. +.+.+.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~--------agv~~KI~~i~g~a~es-Ld~l~~ 143 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL--------AGVDHKITFIEGPALES-LDELLA 143 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh--------ccccceeeeeecchhhh-HHHHHh
Confidence 5679999999999877777664 456899999999999999776653 56677899999988652 122211
Q ss_pred --CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 --DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 --~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.++||+++... ........+.++.+++|+||.+++.
T Consensus 144 ~~~~~tfDfaFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 144 DGESGTFDFAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred cCCCCceeEEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence 358999997542 2244558889999999999999865
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00043 Score=63.42 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.++.++....+.++..|||+|+|.|.++..++... .+++++|+++.+++..++++.. ..+++++.+|
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~-----------~~~~~vi~~D 84 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS-----------NPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT-----------CSSEEEEES-
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh-----------cccceeeecc
Confidence 445566666667789999999999999999998876 6999999999999999988752 4579999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP 198 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp 198 (372)
+......... ......|+++.-. ++ -..++..+...-+.
T Consensus 85 ~l~~~~~~~~--~~~~~~vv~NlPy-~i------s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 85 FLKWDLYDLL--KNQPLLVVGNLPY-NI------SSPILRKLLELYRF 123 (262)
T ss_dssp TTTSCGGGHC--SSSEEEEEEEETG-TG------HHHHHHHHHHHGGG
T ss_pred hhccccHHhh--cCCceEEEEEecc-cc------hHHHHHHHhhcccc
Confidence 9987763211 2355666665443 32 23455555554444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=66.23 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
...+|||+|||+|..+..+... ....++++|.|+.|++.++........ .....+ ..+......
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--------~~~~~~-~~~~~~~~~----- 98 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--------NRNAEW-RRVLYRDFL----- 98 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--------cccchh-hhhhhcccc-----
Confidence 4569999999999765544432 345699999999999999887663210 000101 111110000
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC---ChHHHHHHHhh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLRE 218 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~---~~~~~~~~l~~ 218 (372)
+....|+|++.++|.-+.+ .....+++++.+.+.+ .+|+..| .+...+..+++
T Consensus 99 ~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~ 154 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARD 154 (274)
T ss_pred cCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHH
Confidence 1234499999999998744 6678888888888776 6666554 34444555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.2e-05 Score=71.04 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=67.0
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc--
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-- 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-- 157 (372)
+...++ .|||+.||.|.++..++. ...+|+|||+++++++.|++++... + ..+++|+++++.++...
T Consensus 193 l~~~~~-~vlDlycG~G~fsl~la~-~~~~V~gvE~~~~av~~A~~Na~~N--------~-i~n~~f~~~~~~~~~~~~~ 261 (352)
T PF05958_consen 193 LDLSKG-DVLDLYCGVGTFSLPLAK-KAKKVIGVEIVEEAVEDARENAKLN--------G-IDNVEFIRGDAEDFAKALA 261 (352)
T ss_dssp CTT-TT-EEEEES-TTTCCHHHHHC-CSSEEEEEES-HHHHHHHHHHHHHT--------T---SEEEEE--SHHCCCHHC
T ss_pred hhcCCC-cEEEEeecCCHHHHHHHh-hCCeEEEeeCCHHHHHHHHHHHHHc--------C-CCcceEEEeeccchhHHHH
Confidence 333444 899999999999999865 4568999999999999999998742 2 34799998887653210
Q ss_pred c--------c-cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhh
Q 017369 158 K--------V-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (372)
Q Consensus 158 ~--------~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~ 218 (372)
. . ......+|+|+..--=.-+ . ..+++.+.+ + ..++...-|+..+...+..
T Consensus 262 ~~r~~~~~~~~~~~~~~~d~vilDPPR~G~--~----~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~~ 321 (352)
T PF05958_consen 262 KAREFNRLKGIDLKSFKFDAVILDPPRAGL--D----EKVIELIKK---L-KRIVYVSCNPATLARDLKI 321 (352)
T ss_dssp CS-GGTTGGGS-GGCTTESEEEE---TT-S--C----HHHHHHHHH---S-SEEEEEES-HHHHHHHHHH
T ss_pred hhHHHHhhhhhhhhhcCCCEEEEcCCCCCc--h----HHHHHHHhc---C-CeEEEEECCHHHHHHHHHH
Confidence 0 0 0012368999764311111 0 123333332 2 2555555566666665543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.2e-05 Score=73.35 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=79.7
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..+...++.+|||+-||.|.+++.++. ...+|+|+|+++++++.|+++++. +++. |+.|+.+++.+....
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~--------n~i~-N~~f~~~~ae~~~~~ 356 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAA--------NGID-NVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHhhcCCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHH--------cCCC-cEEEEeCCHHHHhhh
Confidence 333445778999999999999999874 566899999999999999999874 2333 599999999876542
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
.. ....+|.|+..--=--+ -..+++.+.+ ++|-..+++++ |+..+...
T Consensus 357 ~~--~~~~~d~VvvDPPR~G~------~~~~lk~l~~-~~p~~IvYVSC-NP~TlaRD 404 (432)
T COG2265 357 WW--EGYKPDVVVVDPPRAGA------DREVLKQLAK-LKPKRIVYVSC-NPATLARD 404 (432)
T ss_pred cc--ccCCCCEEEECCCCCCC------CHHHHHHHHh-cCCCcEEEEeC-CHHHHHHH
Confidence 11 23578999875322111 1134444443 56666666665 44444443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00031 Score=64.05 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=66.7
Q ss_pred CEEEEecCCccccHHHHHHc--C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 86 DVVLDLACGKGGDLIKWDKA--K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~--~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+|+=||||.=-++.-++.. + ...++++|+++++++.|++-.... .++..++.|+++|..+.+. .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-------~~L~~~m~f~~~d~~~~~~-----d 189 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-------LGLSKRMSFITADVLDVTY-----D 189 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------HH-SSEEEEES-GGGG-G-----G
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-------ccccCCeEEEecchhcccc-----c
Confidence 59999999987666655542 2 346899999999999999876521 2446679999999987654 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
-..||+|+......- +.+...++|.++.+.++||..+++-..++
T Consensus 190 l~~~DvV~lAalVg~---~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 190 LKEYDVVFLAALVGM---DAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp ----SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred cccCCEEEEhhhccc---ccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 368999987654431 34567899999999999999998775443
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=68.94 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=81.1
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcC---CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
+.+.++.+|||++++.|+=+..++... ...|+++|+++.-++..++++++.+. . ++..++.|....+-
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~--------~-nv~~~~~d~~~~~~ 222 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV--------R-NVIVVNKDARRLAE 222 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC--------C-ceEEEecccccccc
Confidence 456789999999999999887777642 23479999999999999998875332 2 46777777764432
Q ss_pred ccccCCCCCeeEEEecc------ccc------ccCCCH------HHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 157 DKVLADDAPFDICSCQF------AMH------YSWSTE------ARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~------~l~------~~~~~~------~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ....++||.|++.- +++ |-+... .-..++|..+.+.|||||.++.+|-
T Consensus 223 ~--~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 223 L--LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred c--ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 1 10223699998842 221 111111 1247889999999999999998774
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00019 Score=66.93 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=67.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.++|||||++|+++..+++.+. .|++||..+ |-. .... ..++..+.+|.....-
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~---~L~~------------~~~V~h~~~d~fr~~p----- 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQ---SLMD------------TGQVEHLRADGFKFRP----- 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCH---hhhC------------CCCEEEEeccCcccCC-----
Confidence 36899999999999999999998766 999999654 211 1111 3468888888765431
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC--cEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg--G~li~~~ 206 (372)
+.+.+|+++|..+.. +..+.+-+.+.|..| ..+|+++
T Consensus 267 ~~~~vDwvVcDmve~--------P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 267 PRKNVDWLVCDMVEK--------PARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CCCCCCEEEEecccC--------HHHHHHHHHHHHhcCcccEEEEEE
Confidence 257899999987743 456667777777665 3455554
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00029 Score=65.19 Aligned_cols=116 Identities=21% Similarity=0.308 Sum_probs=81.7
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++..|||+++|.|+=+..++.. ..+.+++.|+++.-+...+.+..+.+ ..++.....|.......
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---------~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---------VFNVIVINADARKLDPK 151 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----------SSEEEEESHHHHHHHH
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---------CceEEEEeecccccccc
Confidence 45678999999999999988777664 35789999999999999988887432 23577777887665211
Q ss_pred cccCCCCCeeEEEecc------cccccCC------C------HHHHHHHHHHHHHhc----CCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQF------AMHYSWS------T------EARARRALANVSALL----RPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~~------~------~~~~~~~l~~i~~~L----kpgG~li~~~~ 207 (372)
. ....||.|++.- ++..-.+ . ..-..++|+++.+.+ ||||+++.+|-
T Consensus 152 -~--~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 152 -K--PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp -H--HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred -c--cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 0 234699999842 1211100 0 012467899999999 99999998773
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=62.37 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=68.1
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
....|+|..||-|+.+..++..+. .|+++|+++.-|.-|+++++- .|+..++.|++||..++--.... ..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaei--------YGI~~rItFI~GD~ld~~~~lq~-~K 163 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEV--------YGVPDRITFICGDFLDLASKLKA-DK 163 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhcccee--------ecCCceeEEEechHHHHHHHHhh-hh
Confidence 456899999999999998876555 899999999999999999875 45677999999999764311000 22
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg 199 (372)
..+|+|+.+..- +.+.....-+-.+...+.|.
T Consensus 164 ~~~~~vf~sppw----ggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 164 IKYDCVFLSPPW----GGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred heeeeeecCCCC----CCcchhhhhhhhhhhhcchh
Confidence 345666554322 12233333344444555554
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=61.66 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=75.6
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
...+.|+|+|+|.++.-.++ ...+|++++.+|.-...|.+++.- .-..++.++.+|+.+..+ .
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v---------~g~~n~evv~gDA~~y~f-------e 95 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHV---------PGDVNWEVVVGDARDYDF-------E 95 (252)
T ss_pred hhceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCC---------CCCcceEEEecccccccc-------c
Confidence 37899999999977665544 466899999999999999888642 114579999999988776 5
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
..|+|+|-+.=.-+.+ +....+++.+...||.+|.++
T Consensus 96 ~ADvvicEmlDTaLi~--E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 96 NADVVICEMLDTALIE--EKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccceeHHHHhhHHhhc--ccccHHHHHHHHHhhcCCccc
Confidence 7899999763222221 445678888888999998876
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00042 Score=63.87 Aligned_cols=137 Identities=17% Similarity=0.170 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHhhccccc-cchhhhhcCccccchhhhHHHHHHHHHHhC--CCCCEEEEecCCccccHHHHHHc-CCCE
Q 017369 34 ESTKVFARKVADHYSRRTN-QTLEEREASPIIHLKKLNNWIKSVLVQLYA--RRGDVVLDLACGKGGDLIKWDKA-KIGY 109 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~-~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~--~~~~~VLDlGcG~G~~~~~l~~~-~~~~ 109 (372)
++.......+-.+|-.... .-...+--.++..--.|-.|+..+|..... +..-++||||||...+..-+... ..=+
T Consensus 49 ~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~ 128 (299)
T PF05971_consen 49 EAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWS 128 (299)
T ss_dssp HHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--E
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCe
Confidence 4455555554333322333 233333334443334677888887765422 12568999999998765444332 2236
Q ss_pred EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccc
Q 017369 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177 (372)
Q Consensus 110 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~ 177 (372)
++|+|+++..++.|++..... ..+..+|+++...-...-+.....+.+.||+++|+--++-
T Consensus 129 fvaTdID~~sl~~A~~nv~~N-------~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 129 FVATDIDPKSLESARENVERN-------PNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EEEEES-HHHHHHHHHHHHHT--------T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEEecCCHHHHHHHHHHHHhc-------cccccceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 999999999999999998741 2567788887654322222223334578999999987764
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00062 Score=59.99 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=77.1
Q ss_pred HHHHHh-CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe-EEEECcCcc
Q 017369 76 VLVQLY-ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA-RLICGDCYE 153 (372)
Q Consensus 76 ~l~~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~ 153 (372)
.+.... ..++..+||+|+.||+++..++..+..+|+|+|..-..+..--+. .+++ .+...|+..
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------------d~rV~~~E~tN~r~ 135 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------------DPRVIVLERTNVRY 135 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc--------------CCcEEEEecCChhh
Confidence 344433 347889999999999999999999998999999987665443221 2233 334455554
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe-CChH
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-PDAN 210 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~-~~~~ 210 (372)
+.-.. + .+..|+++|.-++. ....+|..+..+++|+|.++.-+ |.-+
T Consensus 136 l~~~~-~--~~~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~LvKPQFE 183 (245)
T COG1189 136 LTPED-F--TEKPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLVKPQFE 183 (245)
T ss_pred CCHHH-c--ccCCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEecchhh
Confidence 43211 1 24789999987764 36789999999999999876544 4443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=59.64 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=88.1
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc---CCC-cc---------------cc-cccCCC---
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN---GDA-DH---------------HQ-RRKKFS--- 141 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~---~~~-~~---------------~~-~~~~~~--- 141 (372)
..+||-.|||.|+++..++..+. .+-|-++|--|+-...=.+. ..+ .. .| +.-..+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 57899999999999999987655 56677887777643322221 000 00 00 000000
Q ss_pred --------cCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHH
Q 017369 142 --------FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (372)
Q Consensus 142 --------~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 213 (372)
.......||+.+.--. ....+.||+|+..+. .++..+.-..|..|..+|||||+.+
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~--s~~~~~~d~VvTcfF----IDTa~NileYi~tI~~iLk~GGvWi---------- 293 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGT--SSGAGSYDVVVTCFF----IDTAHNILEYIDTIYKILKPGGVWI---------- 293 (369)
T ss_pred ccccCCCCCCccccccceeEEecC--cCCCCccceEEEEEE----eechHHHHHHHHHHHHhccCCcEEE----------
Confidence 0011112333221100 002357999987644 4566889999999999999999876
Q ss_pred HHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 214 ~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.+|.-+|+. .++. |. .-...+ =.+.+++..+++..||+++.+.
T Consensus 294 ---------NlGPLlYHF--~d~~-----------g~----~~~~si-----Els~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 294 ---------NLGPLLYHF--EDTH-----------GV----ENEMSI-----ELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred ---------eccceeeec--cCCC-----------CC----cccccc-----cccHHHHHHHHHhcCcEEEEee
Confidence 233323332 1110 00 000111 3467889999999999999886
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0013 Score=57.88 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=69.0
Q ss_pred CCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+.+|+|||+|.|.-+..++- .+..+|+-+|....-+.-.+......+ -.|++++++.+++..- .
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---------L~nv~i~~~RaE~~~~------~ 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---------LENVEIVHGRAEEFGQ------E 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---------CCCeEEehhhHhhccc------c
Confidence 58999999999998887663 344469999998876555544443211 2369999999887652 2
Q ss_pred CC-eeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 164 AP-FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 164 ~~-fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
.. ||+|++-.+. ....++.-+...+|+||.++
T Consensus 133 ~~~~D~vtsRAva--------~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 133 KKQYDVVTSRAVA--------SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred cccCcEEEeehcc--------chHHHHHHHHHhcccCCcch
Confidence 33 9999876543 35567788889999988865
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00063 Score=57.47 Aligned_cols=108 Identities=23% Similarity=0.265 Sum_probs=69.3
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC-cCccccc-
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHL- 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~- 156 (372)
.++|+.+|||+||..|.++.-.... +.+.|.|||+-. .. ....+.++++ |+.+...
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~-----------p~~Ga~~i~~~dvtdp~~~ 125 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE-----------PPEGATIIQGNDVTDPETY 125 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc-----------CCCCcccccccccCCHHHH
Confidence 3578999999999999999877663 566799999843 11 0223556666 6655321
Q ss_pred ---ccccCCCCCeeEEEecccccccC-------CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 157 ---DKVLADDAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 157 ---~~~~~~~~~fD~V~~~~~l~~~~-------~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.+.+ ++...|+|++.++-.-.= ...+-...++.-....++|+|.|++.+.++
T Consensus 126 ~ki~e~l-p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 126 RKIFEAL-PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred HHHHHhC-CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 1223 678999999876321100 011122344555566789999999988654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0009 Score=60.49 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhCC-CCCEEEEecCCc--cccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 70 NNWIKSVLVQLYAR-RGDVVLDLACGK--GGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 70 ~~~~k~~l~~~~~~-~~~~VLDlGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
..|+.+.+..+.-. .-...||||||- -...-+.+. .+..+|+-+|.++-.+..++..+... -....
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~---------~~g~t 123 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN---------PRGRT 123 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----------TTSEE
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---------CCccE
Confidence 34455555544444 336899999994 234444443 35678999999999999999987641 01238
Q ss_pred EEEECcCccccc-------ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 145 RLICGDCYEVHL-------DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 145 ~~~~~D~~~~~~-------~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++++|+.+..- ...+..+.+ =.+++..++||+ .+.+++..+++.+...|.||.+|+++..
T Consensus 124 ~~v~aD~r~p~~iL~~p~~~~~lD~~rP-Vavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 124 AYVQADLRDPEAILAHPEVRGLLDFDRP-VAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp EEEE--TT-HHHHHCSHHHHCC--TTS---EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred EEEeCCCCCHHHHhcCHHHHhcCCCCCC-eeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 899999987431 011111222 245556677776 4556899999999999999999998764
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00026 Score=58.29 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=92.2
Q ss_pred CCCEEEEecCCccccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.+.+|||+|.|--.++-.+.. .....|.-.|-++..++..++...... ......+.....+...-.. ..
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~------~s~~tsc~vlrw~~~~aqs---q~ 99 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM------ASSLTSCCVLRWLIWGAQS---QQ 99 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc------ccccceehhhHHHHhhhHH---HH
Confidence 467899999985444433333 355579999999999988877654210 0001112222111111000 01
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
...+||+|+|.-++..- +....+.+.|...|+|.|..++..|..-
T Consensus 100 eq~tFDiIlaADClFfd----E~h~sLvdtIk~lL~p~g~Al~fsPRRg------------------------------- 144 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFD----EHHESLVDTIKSLLRPSGRALLFSPRRG------------------------------- 144 (201)
T ss_pred hhCcccEEEeccchhHH----HHHHHHHHHHHHHhCcccceeEecCccc-------------------------------
Confidence 34689999999988653 6678889999999999998765554321
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHH
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEY 296 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~ 296 (372)
-+.+.|...+...||.+....++.+-+++.
T Consensus 145 -------------------------~sL~kF~de~~~~gf~v~l~enyde~iwqr 174 (201)
T KOG3201|consen 145 -------------------------QSLQKFLDEVGTVGFTVCLEENYDEAIWQR 174 (201)
T ss_pred -------------------------chHHHHHHHHHhceeEEEecccHhHHHHHH
Confidence 134556777888999999888888876654
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0004 Score=59.19 Aligned_cols=104 Identities=21% Similarity=0.189 Sum_probs=75.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+.+|||+|+|+|..+...+..+...|+..|+.+..+...+-+.+.+ ...+.+...|+.. .+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an----------gv~i~~~~~d~~g--------~~ 140 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN----------GVSILFTHADLIG--------SP 140 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc----------cceeEEeeccccC--------CC
Confidence 58999999999999888888788878999999988877777666532 3457778877754 34
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCc-EEEEEeCChH
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDAN 210 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~li~~~~~~~ 210 (372)
..||+++..-.+..- ....+++. +...|+..| .+++..|...
T Consensus 141 ~~~Dl~LagDlfy~~----~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 141 PAFDLLLAGDLFYNH----TEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred cceeEEEeeceecCc----hHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 789999998776532 45566777 555555555 4555555543
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.3e-05 Score=58.03 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=44.9
Q ss_pred EEecCCccccHHHHHHc--CC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 89 LDLACGKGGDLIKWDKA--KI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 89 LDlGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
||+|+..|..+..++.. .. .+++++|..+. .+.+.+.+++ .++..+++++.++..+.- . .+ +.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~--------~~~~~~~~~~~g~s~~~l-~-~~-~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK--------AGLSDRVEFIQGDSPDFL-P-SL-PDG 68 (106)
T ss_dssp --------------------------EEEESS---------------------GGG-BTEEEEES-THHHH-H-HH-HH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh--------cCCCCeEEEEEcCcHHHH-H-Hc-CCC
Confidence 68999999877766652 12 37999999995 2222222221 233557999999986531 1 11 247
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
++|+|+.-..- +.+.....++.+.+.|+|||.+++.
T Consensus 69 ~~dli~iDg~H-----~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 69 PIDLIFIDGDH-----SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -EEEEEEES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CEEEEEECCCC-----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 89999987532 2266788899999999999998864
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00042 Score=64.20 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
++.++..+.+.++..++|.-||.|+++..++.. +.+.|+|+|.++.+++.|++++... ..++.+++++.
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----------~~R~~~i~~nF 78 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----------EGRVVLIHDNF 78 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----------CCcEEEEeCCH
Confidence 455666666778899999999999999999875 3478999999999999999987531 34689999988
Q ss_pred cccccccccCCCCCeeEEEecccc
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAM 175 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l 175 (372)
.++.-.-......++|.|++...+
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEeccC
Confidence 765321000023579999887644
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0013 Score=61.24 Aligned_cols=118 Identities=15% Similarity=0.064 Sum_probs=80.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHH--hcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+...+||-+|.|.|-.+.++++.+ ..+++-+|++|.|++.+++. ....+. .+-.+++++++..|+.+.-- .
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~----~sf~dpRv~Vv~dDAf~wlr-~- 361 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQ----GSFSDPRVTVVNDDAFQWLR-T- 361 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhcc----CCccCCeeEEEeccHHHHHH-h-
Confidence 345789999999999999998875 67899999999999999843 221111 12235688999999875321 1
Q ss_pred cCCCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 160 LADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..+.||.|+...-=-.-+. ..---..+..-+++.|+++|.+++...+
T Consensus 362 --a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 362 --AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred --hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 3468999998541110000 0011246788899999999999976533
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=3.3e-05 Score=66.03 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=68.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+.++||+|+|.|..+..+.. ...+|++.++|..|+...++..- ++--. .+-.+ .+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p-~feevyATElS~tMr~rL~kk~y--------------nVl~~-~ew~~--------t~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAP-TFEEVYATELSWTMRDRLKKKNY--------------NVLTE-IEWLQ--------TD 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcc-hHHHHHHHHhhHHHHHHHhhcCC--------------ceeee-hhhhh--------cC
Confidence 457999999999998877643 34469999999999988765421 22111 11111 23
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC-CcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRP-GGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp-gG~li~~~ 206 (372)
-++|+|.|...+.-. .++-++|+.++.+|+| +|.+|+..
T Consensus 168 ~k~dli~clNlLDRc----~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRC----FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred ceeehHHHHHHHHhh----cChHHHHHHHHHHhccCCCcEEEEE
Confidence 479999999888655 4577899999999999 89887765
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0019 Score=55.91 Aligned_cols=106 Identities=20% Similarity=0.135 Sum_probs=78.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+||++|-|-|.....+.+.++..-+-++..++.++..+...-.. ..++....+--.+.- + .+
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e----------k~nViil~g~WeDvl-~-~L- 165 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE----------KENVIILEGRWEDVL-N-TL- 165 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc----------ccceEEEecchHhhh-c-cc-
Confidence 3688999999999998888887778878889999999998887754321 235655555433311 1 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+++.||-|+-.---.+. ++...+.+.+.++|||+|+|-.
T Consensus 166 ~d~~FDGI~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cccCcceeEeechhhHH----HHHHHHHHHHhhhcCCCceEEE
Confidence 57889999865443443 7889999999999999998753
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00027 Score=68.55 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=52.7
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
..++.+..+||++||||.+...++ ++..+|+||++++++++.|+.++...+ ..|++|+++-+++
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ng---------isNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQING---------ISNATFIVGQAED 442 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcC---------ccceeeeecchhh
Confidence 356778999999999999998876 467789999999999999999887432 3479999995554
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=9.9e-05 Score=60.27 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=48.5
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
.+++.|+|.+..++.|+ +.+.-..+++++++.|||||++-+.+|+..++.....
T Consensus 44 ~dns~d~iyaeHvlEHl--t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~ 97 (185)
T COG4627 44 EDNSVDAIYAEHVLEHL--TYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQ 97 (185)
T ss_pred CCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHh
Confidence 67999999999999998 6678889999999999999999999999988776544
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=59.12 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=61.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHc----------CC-------CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA----------KI-------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~----------~~-------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
.+..-+|+|+||..|..+..+... .. -+|+--|+=.+-....-+.+...... -...-..-+
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~--~~~~~~~f~ 91 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQS--LKKFRNYFV 91 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHH--HHHTTSEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhc--cCCCceEEE
Confidence 345579999999999987766531 11 15777776544322222111100000 000001112
Q ss_pred EEEECcCcccccccccCCCCCeeEEEecccccccCC------C-----------------------------HHHHHHHH
Q 017369 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS------T-----------------------------EARARRAL 189 (372)
Q Consensus 145 ~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~------~-----------------------------~~~~~~~l 189 (372)
.-+-+...+--+ |.++.|++++..++||+=. + ..|+..+|
T Consensus 92 ~gvpgSFy~rLf-----P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL 166 (334)
T PF03492_consen 92 SGVPGSFYGRLF-----PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL 166 (334)
T ss_dssp EEEES-TTS--S------TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhhccC-----CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 223344444333 7899999999999999811 1 13556677
Q ss_pred HHHHHhcCCCcEEEEEeC
Q 017369 190 ANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 190 ~~i~~~LkpgG~li~~~~ 207 (372)
+.=++-|+|||+++++++
T Consensus 167 ~~Ra~ELv~GG~mvl~~~ 184 (334)
T PF03492_consen 167 KARAEELVPGGRMVLTFL 184 (334)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHhhheeccCcEEEEEEe
Confidence 777778999999998874
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0026 Score=51.87 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=58.5
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCC-------C
Q 017369 109 YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS-------T 181 (372)
Q Consensus 109 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-------~ 181 (372)
+|+|+||-+++++.+++++.+ .++..++.+++.+-..+.. .+ +.+++|+|+.+.. |+.. .
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~--------~~~~~~v~li~~sHe~l~~--~i-~~~~v~~~iFNLG--YLPggDk~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE--------AGLEDRVTLILDSHENLDE--YI-PEGPVDAAIFNLG--YLPGGDKSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH--------TT-GSGEEEEES-GGGGGG--T---S--EEEEEEEES--B-CTS-TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHh--------cCCCCcEEEEECCHHHHHh--hC-ccCCcCEEEEECC--cCCCCCCCCCcC
Confidence 589999999999999999985 3344579999877665442 22 2358999987653 4432 3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 182 EARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 182 ~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.-..+++.+.++|+|||.+++.+
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEE
Confidence 3455788899999999999988776
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0025 Score=60.57 Aligned_cols=114 Identities=17% Similarity=0.194 Sum_probs=78.3
Q ss_pred HhCCCCCEEEEecCCccccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.++++.+|||+++..|+=+..++. ...+.|++.|.+..-+...+.++..++ -.+......|..+++-.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---------v~ntiv~n~D~~ef~~~ 307 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---------VTNTIVSNYDGREFPEK 307 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---------CCceEEEccCccccccc
Confidence 3567899999999999997766655 356689999999999988888876533 22456667777655421
Q ss_pred cccCCCCCeeEEEecc------cc------cccCCCH-------HHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQF------AM------HYSWSTE-------ARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l------~~~~~~~-------~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.. + ++||-|+... ++ .. ..+. .-.+++|..+..++++||+++.+|
T Consensus 308 -~~-~-~~fDRVLLDAPCSGtgvi~K~~~vkt-~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 308 -EF-P-GSFDRVLLDAPCSGTGVISKDQSVKT-NKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred -cc-C-cccceeeecCCCCCCccccccccccc-chhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 11 3 3899988532 10 00 0011 124778888999999999999766
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0013 Score=54.16 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=44.6
Q ss_pred EEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 87 VVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
+|||+|||.|..+..++..... +++++|+++.+.+.+++++.. .++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~--------n~~-~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL--------NNL-PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH--------cCC-CcEEEEEeeeeC
Confidence 4899999999998888776543 799999999999999998763 122 247777766543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0045 Score=53.65 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcc--------------------------
Q 017369 83 RRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADH-------------------------- 133 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------------------- 133 (372)
..+-++.|.+||.|.++.-+.- .....|+|-|+++++++.|++++.-.-.-
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 4557999999999987665533 23457999999999999998876311000
Q ss_pred ---c----ccccCCCcCeEEEECcCcccccccccCCCCCeeEEEeccccccc--CC---CHHHHHHHHHHHHHhcCCCcE
Q 017369 134 ---H----QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS--WS---TEARARRALANVSALLRPGGT 201 (372)
Q Consensus 134 ---~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~---~~~~~~~~l~~i~~~LkpgG~ 201 (372)
. ....+-.......++|+++.............|+|+...-.-.+ |+ +..-...+|..++.+|-++++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 0 11122234567788888763211111133457999986422111 32 344578899999999954555
Q ss_pred EEEE
Q 017369 202 FIGT 205 (372)
Q Consensus 202 li~~ 205 (372)
+.++
T Consensus 210 V~v~ 213 (246)
T PF11599_consen 210 VAVS 213 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5553
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0024 Score=56.99 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=57.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
+.+..+|+|||||-=-++..|.... ...|+|+||+..+++......... ..+..+...|+...+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----------~~~~~~~v~Dl~~~~----- 167 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----------GVPHDARVRDLLSDP----- 167 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----------T-CEEEEEE-TTTSH-----
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----------CCCcceeEeeeeccC-----
Confidence 3457899999999988888887654 347999999999999888776532 345677777876544
Q ss_pred CCCCCeeEEEeccccccc
Q 017369 161 ADDAPFDICSCQFAMHYS 178 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~ 178 (372)
+....|+.+..=+++-+
T Consensus 168 -~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 168 -PKEPADLALLLKTLPCL 184 (251)
T ss_dssp -TTSEESEEEEET-HHHH
T ss_pred -CCCCcchhhHHHHHHHH
Confidence 45789999988777655
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.004 Score=55.76 Aligned_cols=93 Identities=8% Similarity=-0.080 Sum_probs=63.0
Q ss_pred HHhCCCCC--EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccC-CCcCeEEEECcCcccc
Q 017369 79 QLYARRGD--VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVH 155 (372)
Q Consensus 79 ~~~~~~~~--~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~ 155 (372)
...++++. +|||+-+|.|.++..++..+. .|+++|-++.+....+..+...... ..... +..+++++++|..+.-
T Consensus 81 Avglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~-~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYAD-AEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred HhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhc-cccchhhhceEEEEeCcHHHHH
Confidence 34556766 999999999999999998866 5999999999887776665531000 00000 1246888899886542
Q ss_pred cccccCCCCCeeEEEecccccc
Q 017369 156 LDKVLADDAPFDICSCQFAMHY 177 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~ 177 (372)
- . ....||+|++.-.+.+
T Consensus 159 ~-~---~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 159 T-D---ITPRPQVVYLDPMFPH 176 (250)
T ss_pred h-h---CCCCCcEEEECCCCCC
Confidence 1 1 1247999998766554
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.013 Score=51.13 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=76.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.+..+.|+||-.|.+...+...+. ..+++.|+++..++.|.+.+.. .++..++...++|... ++.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~--------~~l~~~i~vr~~dgl~-~l~---- 81 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK--------NNLSERIDVRLGDGLA-VLE---- 81 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh--------cCCcceEEEeccCCcc-ccC----
Confidence 4566699999999999999888654 4599999999999999998875 5556778888888743 221
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+..+|+|+...+=- .....+|++-...|+.==++++.
T Consensus 82 ~~d~~d~ivIAGMGG------~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 82 LEDEIDVIVIAGMGG------TLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred ccCCcCEEEEeCCcH------HHHHHHHHHhhhhhcCcceEEEC
Confidence 455799887665432 34677888877777643344443
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.006 Score=60.90 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=91.7
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc---C--CCEEE
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---K--IGYYV 111 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~---~--~~~v~ 111 (372)
...++-.-..|+...... ....+..+.....+.. .+.+.+..+|+|.+||+|+++...... . ...++
T Consensus 147 G~~yE~ll~~fa~~~~k~-----~GEfyTP~~v~~liv~---~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~y 218 (489)
T COG0286 147 GDAYEYLLRKFAEAEGKE-----AGEFYTPREVSELIVE---LLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIY 218 (489)
T ss_pred hHHHHHHHHHHHHhcCCC-----CCccCChHHHHHHHHH---HcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEE
Confidence 344444555554322221 1333445555333333 333457779999999999987776542 1 24689
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEeccccc---cc----------
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH---YS---------- 178 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~---~~---------- 178 (372)
|.|+++.....|+-++-- ++....+....+|....|....-...+.||.|+++--+. |.
T Consensus 219 GqE~~~~t~~l~~mN~~l--------hgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~ 290 (489)
T COG0286 219 GQEINDTTYRLAKMNLIL--------HGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDE 290 (489)
T ss_pred EEeCCHHHHHHHHHHHHH--------hCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccc
Confidence 999999999999988652 222223455556554443211000236799888864221 11
Q ss_pred -------CCCHHHH-HHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 179 -------WSTEARA-RRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 179 -------~~~~~~~-~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.+.... ..+++.+...|+|||+.-+.+|++
T Consensus 291 ~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 291 RFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred cccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 1111222 788999999999999766666543
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.054 Score=52.01 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=35.3
Q ss_pred CCCCeeEEEecccccccCCC----------------------------------HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYSWST----------------------------------EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~----------------------------------~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
|.++.+++.+..++||+-.- ..|+..+|+.=++-|.|||.+++++.
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 78999999999999998210 01355666666778899999998874
Q ss_pred C
Q 017369 208 D 208 (372)
Q Consensus 208 ~ 208 (372)
.
T Consensus 239 G 239 (386)
T PLN02668 239 G 239 (386)
T ss_pred c
Confidence 3
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.054 Score=49.47 Aligned_cols=114 Identities=13% Similarity=-0.010 Sum_probs=71.9
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCCh-HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc---
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE-GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL--- 160 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--- 160 (372)
...|+.||||-= +..+.-.....+.-+|++- ++++.-++.+.+.+ .....+..++..|+. ..+...+
T Consensus 82 ~~qvV~LGaGlD--Tr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~------~~~~~~~~~v~~Dl~-~~w~~~L~~~ 152 (260)
T TIGR00027 82 IRQVVILGAGLD--TRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELG------AEPPAHRRAVPVDLR-QDWPAALAAA 152 (260)
T ss_pred CcEEEEeCCccc--cHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcC------CCCCCceEEeccCch-hhHHHHHHhC
Confidence 457999999874 4443222222345555554 35555555554211 112346788888886 2222111
Q ss_pred -CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 161 -ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 161 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.....--++++-.++.|+ +.+....+|+.+.+...||+.+++...+.
T Consensus 153 gfd~~~ptl~i~EGvl~YL--~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 153 GFDPTAPTAWLWEGLLMYL--TEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCCCCCCeeeeecchhhcC--CHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 122345688888899998 77889999999999999999999887543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0055 Score=53.95 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=72.9
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChH----HHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEG----SIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+++++|+.+||-||+++|.......+. +.+-|++++.|+- .+..|++| .|+--+.-|+
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------------tNiiPIiEDA 214 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------------TNIIPIIEDA 214 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------------CCceeeeccC
Confidence 3567889999999999999877776553 4456999999974 34445443 2466677787
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
....--.. .-+-.|+|++..+- ++..+.+.-++...||+||.|++++
T Consensus 215 rhP~KYRm--lVgmVDvIFaDvaq------pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 215 RHPAKYRM--LVGMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred CCchheee--eeeeEEEEeccCCC------chhhhhhhhhhhhhhccCCeEEEEE
Confidence 64321111 12467888765432 2455666778899999999999876
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.019 Score=53.98 Aligned_cols=121 Identities=21% Similarity=0.184 Sum_probs=74.2
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc---C--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA---K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~---~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
.+.++|+.+|||+|+..|.=+..++.. . .+.|++-|.+..-+....+..... ...++.+...|+..
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---------~~~~~~v~~~~~~~ 220 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---------PSPNLLVTNHDASL 220 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---------CCcceeeeccccee
Confidence 445679999999999999988777653 2 338999999987666655554321 02234444444433
Q ss_pred ccccc--ccC--CCCCeeEEEecc------ccccc---CCC-H---------HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 154 VHLDK--VLA--DDAPFDICSCQF------AMHYS---WST-E---------ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 154 ~~~~~--~~~--~~~~fD~V~~~~------~l~~~---~~~-~---------~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.+-.. .+. ....||-|+|.- ++... |.. + .-...+|.+-.++||+||.++.+|-.
T Consensus 221 ~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 221 FPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred ccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 33210 000 235799998842 11110 100 0 12356889999999999999988743
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0077 Score=55.91 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=61.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
++.++..+.+.++..++|.-.|.|+++..++.. +.+.++|+|-++.+++.|++++.. ...++.+++++.
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~----------~~~r~~~~~~~F 78 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK----------FDDRFIFIHGNF 78 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC----------CCTTEEEEES-G
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh----------ccceEEEEeccH
Confidence 455666677788999999999999999999975 447899999999999999988763 245788898887
Q ss_pred cccccccccC-CCCCeeEEEecc
Q 017369 152 YEVHLDKVLA-DDAPFDICSCQF 173 (372)
Q Consensus 152 ~~~~~~~~~~-~~~~fD~V~~~~ 173 (372)
.++.-.-... ....+|.|+...
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHHHHccCCCccCEEEEcc
Confidence 7654211010 235788887754
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0045 Score=53.88 Aligned_cols=108 Identities=20% Similarity=0.293 Sum_probs=54.7
Q ss_pred CCCEEEEecCCccccHHHHHH-----cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
+...|+|+|.-.|+-+..++. ...++|+|+|+.-...... ..+ ...+..++++++||..+...-.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e--------~hp~~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIE--------SHPMSPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGG--------G----TTEEEEES-SSSTHHHH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHh--------hccccCceEEEECCCCCHHHHH
Confidence 457999999999997776654 1456899999954322211 111 1233568999999987654321
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
. ........+|+.- + +|. ..+..+.|+....++++|+++|+.-
T Consensus 102 ~v~~~~~~~~~vlVilD-s-~H~---~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 102 QVRELASPPHPVLVILD-S-SHT---HEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp TSGSS----SSEEEEES-S--------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred HHHHhhccCCceEEEEC-C-Ccc---HHHHHHHHHHhCccCCCCCEEEEEe
Confidence 1 1112233344432 2 222 2456788888999999999998754
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0065 Score=52.17 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCEEEEecCCccccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.-.+.|||||-|+++.++....+.. +.|.+|-...-+..+.|+...... ...+...++.+...++...- +... ..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~--~a~~~~~ni~vlr~namk~l-pn~f-~k 136 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRT--SAEGQYPNISVLRTNAMKFL-PNFF-EK 136 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcc--ccccccccceeeeccchhhc-cchh-hh
Confidence 3568999999999999998766555 889999988888777776532110 01122334555555544321 0000 11
Q ss_pred CCeeEEEecccccccCCCHH----HHHHHHHHHHHhcCCCcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEA----RARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~----~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+..+-.+..+---|+..... --..++.+..-+|++||.++..+
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 21221111111111100000 01357788888999999876544
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=48.09 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=77.0
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..+|..+..++..+.+|+|+|.|+.....++.+....+|+++++-.+..++-+.-. .++.....|..-|+
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R--------~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWR--------AGCAKSTRFRRKDL 131 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHH--------Hhcccchhhhhhhh
Confidence 3444555555567789999999999998887776655689999999999888876542 55666788888888
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE-EEeCChH
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-GTMPDAN 210 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li-~~~~~~~ 210 (372)
...++ ..|..|+...+-.- ...+-..+..-|..|..++ +.+|-+.
T Consensus 132 wK~dl-------~dy~~vviFgaes~-------m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 132 WKVDL-------RDYRNVVIFGAESV-------MPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hhccc-------cccceEEEeehHHH-------HhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 87766 33444443322211 2223344555666666654 4455543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.011 Score=54.90 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
-+-..++.....+|+.|||.-||+|..+...... ..+++|+|++++.++.|++|+.
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHH
Confidence 3344456667789999999999999877766544 4479999999999999999975
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.013 Score=56.27 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=76.3
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCc-CeEEEECcCccccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVL 160 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~ 160 (372)
.+.+|||.=+|+|.=++.++.. +...|+.-|+|+++++..+++.+- +++.. .+++.+.|+..+-..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~--------N~~~~~~~~v~~~DAn~ll~~--- 117 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL--------NGLEDERIEVSNMDANVLLYS--- 117 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH--------CT-SGCCEEEEES-HHHHHCH---
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh--------ccccCceEEEehhhHHHHhhh---
Confidence 3568999999999888887765 456799999999999999998763 34454 688889998765421
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
....||+|=.. +-..+..+|..+.+.++.||++.+|.-|...+
T Consensus 118 -~~~~fD~IDlD--------PfGSp~pfldsA~~~v~~gGll~vTaTD~a~L 160 (377)
T PF02005_consen 118 -RQERFDVIDLD--------PFGSPAPFLDSALQAVKDGGLLCVTATDTAVL 160 (377)
T ss_dssp -STT-EEEEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred -ccccCCEEEeC--------CCCCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence 35789999532 11346789999999999999999987665544
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.023 Score=52.07 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
.+..++..+.+.++...+|.--|.|+++..++.... ++++|+|-++.+++.|+++.... ..++.++++
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----------~~r~~~v~~ 80 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----------DGRVTLVHG 80 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----------CCcEEEEeC
Confidence 456677777888999999999999999999998643 67999999999999999998632 457888888
Q ss_pred cCcccccccccCCCCCeeEEEecc
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQF 173 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~ 173 (372)
++.++...-.....+.+|-|+...
T Consensus 81 ~F~~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 81 NFANLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred cHHHHHHHHHhcCCCceeEEEEec
Confidence 776544210000234677776643
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0046 Score=57.20 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=76.1
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHH-------HHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDC-------RTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
..+||..|+|.-.|||.++...+.- .+.|+|.||+-.|+... +.++++++ ....-+.++.+|..+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg-------~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYG-------SSSQFLDVLTADFSN 276 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh-cceeeccccchheeecccCCCcchhHhHHHhC-------CcchhhheeeecccC
Confidence 4579999999999999998877654 44899999998888732 22333221 123346677888887
Q ss_pred cccccccCCCCCeeEEEecc------------------------cccccCCC-----HHHHHHHHHHHHHhcCCCcEEEE
Q 017369 154 VHLDKVLADDAPFDICSCQF------------------------AMHYSWST-----EARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~------------------------~l~~~~~~-----~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.++. ....||.|+|.- ...|.... ..-....|.-.++.|.-||++++
T Consensus 277 ~~~r----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 277 PPLR----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred cchh----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 6664 456899999951 00111000 01234566677788888888887
Q ss_pred EeC
Q 017369 205 TMP 207 (372)
Q Consensus 205 ~~~ 207 (372)
-.|
T Consensus 353 w~p 355 (421)
T KOG2671|consen 353 WLP 355 (421)
T ss_pred ecC
Confidence 666
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.013 Score=51.95 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHH
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 125 (372)
-+-..++.....++..|||.-||+|..+...... ..+.+|+|+++..++.|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 3444455667789999999999999877776554 4479999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.029 Score=51.10 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=85.0
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+||-+|.|.|+.+.....+ ....+.-+|+....++..++-....... --+.++.++.||...+-- ..
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g-----y~~~~v~l~iGDG~~fl~--~~- 191 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG-----YEGKKVKLLIGDGFLFLE--DL- 191 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc-----cCCCceEEEeccHHHHHH--Hh-
Confidence 45689999999999999887765 3456999999999999888876643211 113578888888754321 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
..++||+|+.--.=--......-.+.+++.+.+.||+||+++..--+.....+-++
T Consensus 192 ~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~ 247 (337)
T KOG1562|consen 192 KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIK 247 (337)
T ss_pred ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHH
Confidence 36899999875321111001112467788899999999998876655444433333
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.015 Score=49.75 Aligned_cols=115 Identities=22% Similarity=0.155 Sum_probs=62.5
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHH----HHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSI----EDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++++.+|+|+-.|.|.++.-+... ..+.|+++=..+... ...+.+... +.....|++.+-.+..
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~-------~e~~~aN~e~~~~~~~ 115 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAA-------REPVYANVEVIGKPLV 115 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhh-------hhhhhhhhhhhCCccc
Confidence 345689999999999999988877653 334677765544311 101111000 0011123333433333
Q ss_pred ccccccccCCCCCeeEEEecc---cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 153 EVHLDKVLADDAPFDICSCQF---AMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~---~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+. +.+..|++.... .+|.-.-......++...+++.|||||.+++.-
T Consensus 116 A~~------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 116 ALG------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred ccC------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 322 233445544421 111111123567889999999999999987653
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.044 Score=51.58 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=65.4
Q ss_pred HhCCCCCEEEEecCC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....|+.+|+=+|+| -|..+.++++....+|+++|.|++-++.|++... -.++... ..... +
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA---------------d~~i~~~-~~~~~-~ 224 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA---------------DHVINSS-DSDAL-E 224 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC---------------cEEEEcC-Cchhh-H
Confidence 456799999999998 3446777777555799999999999999988754 2233322 11111 1
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. -.+.||+|+..-. . ..+....+.|++||.+++.
T Consensus 225 ~--~~~~~d~ii~tv~-~----------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 225 A--VKEIADAIIDTVG-P----------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred H--hHhhCcEEEECCC-h----------hhHHHHHHHHhcCCEEEEE
Confidence 1 1134999986544 3 4567778899999997754
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.012 Score=56.27 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=51.1
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
..|||+|.|||.++.-.+..+...|++++.=..|.+.|++...+ +++..+++++.--..++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k--------ng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK--------NGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc--------CCCccceeeeccccceee
Confidence 46899999999888887778888899999999999999998875 667788888865544443
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.025 Score=50.56 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=43.5
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
..++.....++..|||.-||+|..+...... ..+++|+|++++..+.|.+|+..
T Consensus 154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHH
Confidence 3345556678999999999999877776554 34799999999999999999863
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.42 Score=42.64 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=91.2
Q ss_pred CCCccccchhhhHHHHHHHH---hhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHH
Q 017369 26 GDSHFLEDESTKVFARKVAD---HYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW 102 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~va~---~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l 102 (372)
-..+|.-++.-...|+.|.. +|-.+... ..+....+.+.. ...+...+|+|+|+..-+..+
T Consensus 33 lpP~~FYD~~GS~LFe~I~~LPEYYpTRtEa-------------aIl~~~a~Eia~---~~g~~~lveLGsGns~Ktr~L 96 (321)
T COG4301 33 LPPKYFYDDRGSELFEQITRLPEYYPTRTEA-------------AILQARAAEIAS---ITGACTLVELGSGNSTKTRIL 96 (321)
T ss_pred CCCceeecccHHHHHHHHhccccccCchhHH-------------HHHHHHHHHHHH---hhCcceEEEecCCccHHHHHH
Confidence 34566666667778887754 33322111 112222222221 234789999999998766666
Q ss_pred HHc-----CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC-eeEEEeccccc
Q 017369 103 DKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP-FDICSCQFAMH 176 (372)
Q Consensus 103 ~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-fD~V~~~~~l~ 176 (372)
++. ...+++.+|+|...+....+.+.. .-....+.-+++|... ++... +..+ ==.++...++-
T Consensus 97 lda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~--------~y~~l~v~~l~~~~~~-~La~~--~~~~~Rl~~flGStlG 165 (321)
T COG4301 97 LDALAHRGSLLRYVPIDVSASILRATATAILR--------EYPGLEVNALCGDYEL-ALAEL--PRGGRRLFVFLGSTLG 165 (321)
T ss_pred HHHhhhcCCcceeeeecccHHHHHHHHHHHHH--------hCCCCeEeehhhhHHH-HHhcc--cCCCeEEEEEeccccc
Confidence 553 234799999999988765544431 1113346667777642 22111 2222 22333344666
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 177 YSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 177 ~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++ ++.+...+|..+...|+||-+|++.+
T Consensus 166 N~--tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 166 NL--TPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CC--ChHHHHHHHHHHHhcCCCcceEEEec
Confidence 66 67889999999999999999988765
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.049 Score=47.85 Aligned_cols=135 Identities=15% Similarity=0.215 Sum_probs=77.7
Q ss_pred hhHHHHHH-HHhhccccccchhhhhcCccccchhhhHHHHHHHHHHh---CCCCCEEEEecCCccccHHHHHHcCCC-EE
Q 017369 36 TKVFARKV-ADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKAKIG-YY 110 (372)
Q Consensus 36 ~~~~~~~v-a~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~---~~~~~~VLDlGcG~G~~~~~l~~~~~~-~v 110 (372)
.+.+...+ +.+|.-+.-.-.+.+.-.++-.-..+..++..+|.... ..++.++||||.|.-..--.+-.+..+ +.
T Consensus 26 Vk~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrf 105 (292)
T COG3129 26 VKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRF 105 (292)
T ss_pred HHHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeeccee
Confidence 33344333 45565332333333444455444455556666655432 225678999999876543333222233 48
Q ss_pred EEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccc
Q 017369 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177 (372)
Q Consensus 111 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~ 177 (372)
+|.|+++..++.|+...... .++...++.....-.+--|...+...+.||+++|+--+|-
T Consensus 106 vGseid~~sl~sA~~ii~~N-------~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 106 VGSEIDSQSLSSAKAIISAN-------PGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ecCccCHHHHHHHHHHHHcC-------cchhhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 99999999999999887632 2334445544332222223333334689999999998874
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.054 Score=48.69 Aligned_cols=115 Identities=15% Similarity=-0.038 Sum_probs=67.7
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
....||++|.|+|.....++......|+-.|+..........+-.. + .+...++..+.....+-.+....... .+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~-~---~~l~~~g~~v~v~~L~Wg~~~~~~~~-~~ 160 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKN-N---IALNQLGGSVIVAILVWGNALDVSFR-LP 160 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhh-h---hhhhhcCCceeEEEEecCCcccHhhc-cC
Confidence 3457999999999877777665666899999876443332221110 0 11122232343333332221111111 12
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..||+|++.-++..- .....++..++..|..+|.+++.++
T Consensus 161 ~~~DlilasDvvy~~----~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 161 NPFDLILASDVVYEE----ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred CcccEEEEeeeeecC----CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 229999999888643 4566778888888888887666665
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.39 Score=42.88 Aligned_cols=109 Identities=15% Similarity=0.060 Sum_probs=61.7
Q ss_pred hCCCCCEEEEecCCccccHHHHH-HcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWD-KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.--.|.+||-+|=+.-. ++.++ ...+.+|+.+|+++.+++.-++..++. +.+++.++.|+.+ ++++.
T Consensus 41 gdL~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----------gl~i~~~~~DlR~-~LP~~ 108 (243)
T PF01861_consen 41 GDLEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEE----------GLPIEAVHYDLRD-PLPEE 108 (243)
T ss_dssp T-STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----------T--EEEE---TTS----TT
T ss_pred CcccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----------CCceEEEEecccc-cCCHH
Confidence 33468899999855432 22222 245668999999999999888776532 3348899999976 34322
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCc-EEEEEeCC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPD 208 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~li~~~~~ 208 (372)
+ .++||++++.-.- +.+.+.-++......||..| ..++..-+
T Consensus 109 ~--~~~fD~f~TDPPy-----T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 109 L--RGKFDVFFTDPPY-----TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp T--SS-BSEEEE---S-----SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred H--hcCCCEEEeCCCC-----CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 2 3899999986532 45788899999999998766 55555433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.061 Score=42.76 Aligned_cols=45 Identities=7% Similarity=-0.000 Sum_probs=40.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
.+.+|+|+|.+-|.-++.++..+...|+++++++...+..++..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 578999999999999999888888889999999999999988765
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.027 Score=51.94 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=53.0
Q ss_pred EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCe
Q 017369 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~f 166 (372)
+|+|+.||.|+...-+...+...+.++|+++.+++..+.++.. ..+++|+.++...+. ...+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---------------~~~~~Di~~~~~~~~---~~~~ 63 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---------------KLIEGDITKIDEKDF---IPDI 63 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---------------CCccCccccCchhhc---CCCC
Confidence 6999999999998888777776689999999999988877642 146778776653211 3569
Q ss_pred eEEEecc
Q 017369 167 DICSCQF 173 (372)
Q Consensus 167 D~V~~~~ 173 (372)
|+++...
T Consensus 64 D~l~~gp 70 (275)
T cd00315 64 DLLTGGF 70 (275)
T ss_pred CEEEeCC
Confidence 9999875
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.028 Score=46.61 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=60.1
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHH-HHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIED-CRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+.+++-+|...=+.=...+..+..++.-||.++--++. .+.+.. .+...|.... +. .-.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s----------------si~p~df~~~-~~---~y~ 61 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS----------------SILPVDFAKN-WQ---KYA 61 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc----------------cccHHHHHHH-HH---Hhh
Confidence 45677777765433333344566678888876522111 111111 1111121110 00 024
Q ss_pred CCeeEEEeccccccc--------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++||.+.|..+++|. .++ ..-...+.++.++|||||.+++.+|-+
T Consensus 62 ~~fD~~as~~siEh~GLGRYGDPidp-~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 62 GSFDFAASFSSIEHFGLGRYGDPIDP-IGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred ccchhhheechhccccccccCCCCCc-cccHHHHHHHHHhhccCCeEEEEeecC
Confidence 789999999999876 111 223567788999999999999999765
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.052 Score=50.59 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=62.2
Q ss_pred CCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
..+|||+|.|.|.-+..+... ....++.++.|+..-+........... .....+..-++.|-..++ .
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----~~td~r~s~vt~dRl~lp------~ 182 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----EKTDWRASDVTEDRLSLP------A 182 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----ccCCCCCCccchhccCCC------c
Confidence 467999999999766554332 223577888888655544333221000 011111222223322222 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
...|++|+...-+-+. ..+......++.+..++.|||.+++..+.
T Consensus 183 ad~ytl~i~~~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 183 ADLYTLAIVLDELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred cceeehhhhhhhhccc-cCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 4567766655443332 23334455889999999999999987654
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.0092 Score=46.24 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=31.3
Q ss_pred CeeEEEecccccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 165 PFDICSCQFAMHYSW--STEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~--~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.||+|+|..+..|+. ...+.+..+++.+++.|+|||.||+.--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999987654431 1235678999999999999999998753
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.02 Score=52.22 Aligned_cols=96 Identities=20% Similarity=0.136 Sum_probs=68.4
Q ss_pred CCCEEEEecCCccccHH-HHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLI-KWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~-~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+..|.|+-+|-|.++. .+...+...|+++|.+|..++..++.++. ++...+...+.+|..... +
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~--------N~V~~r~~i~~gd~R~~~------~ 259 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEA--------NNVMDRCRITEGDNRNPK------P 259 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHh--------cchHHHHHhhhccccccC------c
Confidence 45889999999999998 66677888899999999999999988774 333445566677776544 4
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~ 201 (372)
....|-|... .+.+++..+ -.+.++|||.|-
T Consensus 260 ~~~AdrVnLG----LlPSse~~W----~~A~k~Lk~egg 290 (351)
T KOG1227|consen 260 RLRADRVNLG----LLPSSEQGW----PTAIKALKPEGG 290 (351)
T ss_pred cccchheeec----cccccccch----HHHHHHhhhcCC
Confidence 5778888542 334444444 445567777544
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.14 Score=48.36 Aligned_cols=104 Identities=19% Similarity=0.141 Sum_probs=75.1
Q ss_pred CCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
..+|||.=||+|.=.+.++.. +...++.-|+||.+++..+++.... ...+...+..|+..+-.. ..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---------~~~~~~v~n~DAN~lm~~----~~ 119 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---------SGEDAEVINKDANALLHE----LH 119 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---------CcccceeecchHHHHHHh----cC
Confidence 679999999999888777664 3337999999999999999998731 123455566777654431 23
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..||+|=.. +-..+..++..+.+.++.||++.+|.-|.
T Consensus 120 ~~fd~IDiD--------PFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 120 RAFDVIDID--------PFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred CCccEEecC--------CCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 678888432 11235678888889999999998876543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.2 Score=48.55 Aligned_cols=109 Identities=24% Similarity=0.227 Sum_probs=66.5
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-c--c
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-V--H 155 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~--~ 155 (372)
...++.+||.+|||. |..+..+++... ..++++|.+++.++.+++... +.++...-.+ . .
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---------------~~vi~~~~~~~~~~~ 245 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---------------AETINFEEVDDVVEA 245 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------cEEEcCCcchHHHHH
Confidence 456789999999988 777777776544 369999999999998887532 1122111110 0 0
Q ss_pred cccccCCCCCeeEEEecccc-----------cccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAM-----------HYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l-----------~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.. ......+|+|+....- .|.+....+....+..+.+.|+++|.++..
T Consensus 246 l~~-~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 246 LRE-LTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred HHH-HcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 000 1123468988774321 111111123355788899999999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.11 Score=45.65 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=66.4
Q ss_pred CCEEEEecCCccccHHHHHHc------CC----CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 85 GDVVLDLACGKGGDLIKWDKA------KI----GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~------~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
-.+|+|++...|.++..+.+. .. ..+++||+-+ | .. ...+.-+++|+...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M------------------aP-I~GV~qlq~DIT~~ 101 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M------------------AP-IEGVIQLQGDITSA 101 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C------------------Cc-cCceEEeecccCCH
Confidence 468999999999998877652 11 1399999854 1 11 22467788998765
Q ss_pred ccc----cccCCCCCeeEEEecc-----cccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 155 HLD----KVLADDAPFDICSCQF-----AMHYSW--STEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 155 ~~~----~~~~~~~~fD~V~~~~-----~l~~~~--~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
... +++ ..++.|+|+|.. .+|-+- --.+-+..+|.-...+|||||.|+..+.
T Consensus 102 stae~Ii~hf-ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 102 STAEAIIEHF-GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred hHHHHHHHHh-CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 421 112 346899999976 454330 0112245566777789999999997664
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.08 Score=51.91 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=61.5
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeC--ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC-cccccccccCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDI--AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHLDKVLAD 162 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~--s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~ 162 (372)
..|+|+..|.|+++..+...+. .|.-|=+ .+..+..--.|.- +-..+ |. +.++. -
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~~ntL~vIydRGL---------------IG~yh-DWCE~fsT-----Y 424 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSGPNTLPVIYDRGL---------------IGVYH-DWCEAFST-----Y 424 (506)
T ss_pred eeeeeecccccHHHHHhccCCc-eEEEecccCCCCcchhhhhccc---------------chhcc-chhhccCC-----C
Confidence 4799999999999999876543 3332222 2223333222211 11111 22 22333 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+||+|-+...+... ...-+...+|-++-|+|+|||.+++.
T Consensus 425 PRTYDLlHA~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred Ccchhheehhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEe
Confidence 5899999988776553 34456889999999999999998874
|
; GO: 0008168 methyltransferase activity |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.9 Score=40.17 Aligned_cols=113 Identities=19% Similarity=0.106 Sum_probs=74.7
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCC-hHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC--
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA-EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA-- 161 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-- 161 (372)
...|+-||||- ++..+--.....+.-.|++ |+.++.=++.+.+.+. ..+....++..|+.+..+...+.
T Consensus 93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~------~~~~~~~~Va~Dl~~~dw~~~L~~~ 164 (297)
T COG3315 93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGA------TPPAHRRLVAVDLREDDWPQALAAA 164 (297)
T ss_pred ccEEEEecccc--ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCC------CCCceEEEEeccccccchHHHHHhc
Confidence 47899999975 4444422222234444444 5555555555553211 12236888999998655443332
Q ss_pred --CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 --DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 --~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....--++++-..+.|+ +++...++|..|...+.||-.++...+
T Consensus 165 G~d~~~pt~~iaEGLl~YL--~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 165 GFDRSRPTLWIAEGLLMYL--PEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCCcCCCeEEEeccccccC--CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 24556688889999998 778899999999999999988887765
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.03 Score=54.48 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
++.+|||.=|++|..++.++.. +..+|++.|.++..++..+++.+- ++....++..+.|+..+-....-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~--------N~v~~ive~~~~DA~~lM~~~~~- 179 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL--------NGVEDIVEPHHSDANVLMYEHPM- 179 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhh--------cCchhhcccccchHHHHHHhccc-
Confidence 4678999999999999998874 556799999999999988887763 33445566677787655442111
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
....||+|=.. +-.....+|..+.+.++.||.+.+|.-|...+
T Consensus 180 ~~~~FDvIDLD--------PyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL 222 (525)
T KOG1253|consen 180 VAKFFDVIDLD--------PYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL 222 (525)
T ss_pred cccccceEecC--------CCCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence 24789998421 22335678999999999999999987665443
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.091 Score=40.54 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA 116 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s 116 (372)
+.....|||||+|-+..-+...+. .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 456799999999954444433333 57888863
|
; GO: 0008168 methyltransferase activity |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.24 Score=48.74 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=71.7
Q ss_pred CEEEEecCCccccHHHHHHc-----CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 86 DVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+|+-+|.|.|-+....++. ..-++++++-+|.++-....+.- ..+..+++++..|++....
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~---------~~W~~~Vtii~~DMR~w~a---- 435 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF---------ECWDNRVTIISSDMRKWNA---- 435 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch---------hhhcCeeEEEeccccccCC----
Confidence 46788899999876655442 22368999999999887766422 3456689999999987663
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+....|++++-..=. |.+-+--...|.-+.+.|||+|..|
T Consensus 436 -p~eq~DI~VSELLGS--FGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 436 -PREQADIIVSELLGS--FGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred -chhhccchHHHhhcc--ccCccCCHHHHHHHHhhcCCCceEc
Confidence 457899998742111 1222223468889999999999876
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.5 Score=44.81 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=57.7
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+||=.|||. |..+..+++. +...|+++|.+++-++.|++.... .++ |..+..+.+
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~---------------~vi--~~~~~~~~~ 228 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD---------------KLV--NPQNDDLDH 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc---------------EEe--cCCcccHHH
Confidence 345788999998863 4445555554 344699999999998888763220 111 111111111
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.....+.+|+|+-...- ...+....+.|++||.++..
T Consensus 229 ~~~~~g~~D~vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 229 YKAEKGYFDVSFEVSGH----------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred HhccCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 11012458988754321 13566778899999998754
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.21 Score=44.49 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=47.8
Q ss_pred HhCCCC--CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHH---HHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 80 LYARRG--DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIED---CRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 80 ~~~~~~--~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
..++++ .+|||.-||-|.++.-++..+. +|+++|-|+-+-.. +-+++....... .....+++++++|..+.
T Consensus 69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~---~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 69 VGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELL---AEAMRRIQLIHGDALEY 144 (234)
T ss_dssp TT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTH---HHHHHHEEEEES-CCCH
T ss_pred hCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhH---HHHHhCCEEEcCCHHHH
Confidence 344554 4999999999999998876654 89999999976444 333433210000 00123799999998763
Q ss_pred ccccccCCCCCeeEEEecccccc
Q 017369 155 HLDKVLADDAPFDICSCQFAMHY 177 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~ 177 (372)
-- .++.+||+|.+.-.+.+
T Consensus 145 L~----~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 145 LR----QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CC----CHSS--SEEEE--S---
T ss_pred Hh----hcCCCCCEEEECCCCCC
Confidence 21 15689999998766543
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.35 Score=48.40 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=61.8
Q ss_pred CCCCEEEEecCCccc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--------
Q 017369 83 RRGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-------- 153 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-------- 153 (372)
.++.+|+=+|||.=+ .+...++.....|+++|.+++-++.+++.- .++...|..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG----------------A~~v~i~~~e~~~~~~gy 226 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG----------------AEFLELDFEEEGGSGDGY 226 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----------------CeEEEeccccccccccch
Confidence 368999999999744 455555554458999999999999887632 2222111111
Q ss_pred ---cccc------cccCC-CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 154 ---VHLD------KVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 154 ---~~~~------~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
..-. ..+.. -..+|+|+..-....- ..+..+.+++.+.+||||.++.
T Consensus 227 a~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~----~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 227 AKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGK----PAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcc----cCcchHHHHHHHhcCCCCEEEE
Confidence 0000 00000 1469999876554211 1233345999999999998764
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.29 Score=46.57 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccC-CCcCeEE
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARL 146 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~ 146 (372)
.-+.+.++...+.+.+++...|+|.|-|......+.. +...-+|+++....-+.|.......... ...-+ -...+..
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~-~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKL-MKHFGKKPNKIET 255 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHH-HHHhCCCcCceee
Confidence 3456777888889999999999999999987776653 4445788888765444333222110000 00001 1345778
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++.........+ ....++|+++.+.. + ++...-+.++..-|++|-+++-+-
T Consensus 256 i~gsf~~~~~v~eI--~~eatvi~vNN~~F---d--p~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEI--QTEATVIFVNNVAF---D--PELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred cccccCCHHHHHHH--hhcceEEEEecccC---C--HHHHHhhHHHHhhCCCcceEeccc
Confidence 88887654432222 35688898887763 2 344445569999999999988554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.79 Score=43.80 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCCEEEEecCCccc-cHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc-ccccc-c
Q 017369 83 RRGDVVLDLACGKGG-DLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLD-K 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~-~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~-~ 158 (372)
.++.+|+=+|||+=+ .+..+++. +...|+.+|.++.-++.|++.... ..+..... ..... .
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------------~~~~~~~~~~~~~~~~ 231 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------------DVVVNPSEDDAGAEIL 231 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------------eEeecCccccHHHHHH
Confidence 345599999999844 44555543 567899999999999999986541 11111111 00000 0
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.......+|+|+-.-.. ..++..+.++++|||.+++
T Consensus 232 ~~t~g~g~D~vie~~G~----------~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 232 ELTGGRGADVVIEAVGS----------PPALDQALEALRPGGTVVV 267 (350)
T ss_pred HHhCCCCCCEEEECCCC----------HHHHHHHHHHhcCCCEEEE
Confidence 00012369999865541 2478899999999999764
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.06 Score=53.70 Aligned_cols=105 Identities=26% Similarity=0.346 Sum_probs=61.4
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-CCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc----c
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-KIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE----V 154 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~ 154 (372)
++.++..||||||.+|+++.-.... +.+ -|+|+|+-|- ...+++..++.|+.. .
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi--------------------kp~~~c~t~v~dIttd~cr~ 100 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI--------------------KPIPNCDTLVEDITTDECRS 100 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec--------------------ccCCccchhhhhhhHHHHHH
Confidence 4568899999999999998877654 333 4899999761 112344445555432 2
Q ss_pred ccccccCCCCCeeEEEecccc----ccc---CCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 HLDKVLADDAPFDICSCQFAM----HYS---WSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l----~~~---~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++...+ ..-+.|+|+..++- .|. +....-....|+-+...|+.||.|+-.+
T Consensus 101 ~l~k~l-~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkv 158 (780)
T KOG1098|consen 101 KLRKIL-KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKV 158 (780)
T ss_pred HHHHHH-HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 222111 22355888765421 121 1111122345666778899999977543
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.5 Score=37.09 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=39.4
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccc---------cCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHY---------SWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~---------~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
...|+.++.-.... ....||.|+.+|---- +-....-+..++..+..+|+++|.+.+|..+.
T Consensus 58 ~~VDat~l~~~~~~-~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 58 HGVDATKLHKHFRL-KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred cCCCCCcccccccc-cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34566655432111 3578999998773221 00012345788999999999999999887444
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.66 Score=43.84 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc---------CCCEEEEEeCChHHHHHHHHHhcC
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
+..|+..++.....+....++|+|.|+|.++..+++. ...+|.-|++|++..+.-++.++.
T Consensus 62 la~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 62 LAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 4456666666666666788999999999988777652 255799999999999888888764
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.6 Score=40.84 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=60.8
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc-
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK- 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~- 158 (372)
.+.++.+||..|||. |..+..++.....+|++++.++...+.+++... ..+..+-. .....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~----------------~~~~~~~~-~~~~~~ 224 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGA----------------DEVLNSLD-DSPKDK 224 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC----------------CEEEcCCC-cCHHHH
Confidence 356788999988763 667777777655679999999998888754221 11111111 00000
Q ss_pred -ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 -VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 -~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.......+|+|+..... ...+..+.+.|+++|.++..
T Consensus 225 ~~~~~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 225 KAAGLGGGFDVIFDFVGT----------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHHhcCCCceEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 00134679988753221 14677888999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.89 Score=42.19 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=75.4
Q ss_pred CEEEEecCCccccHHHHHHcC------------C---------CEEEEEeCCh--HHHHHHHHHhcCCCccc--------
Q 017369 86 DVVLDLACGKGGDLIKWDKAK------------I---------GYYVGIDIAE--GSIEDCRTRYNGDADHH-------- 134 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~------------~---------~~v~gvD~s~--~~l~~a~~~~~~~~~~~-------- 134 (372)
.+||.||.|.|.-+..++..- . -.++.|||.+ ..+......+.......
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987544443211 1 2789999986 34554444443210000
Q ss_pred ccccCCCcCeEEEECcCcccccccc--cCCCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 135 QRRKKFSFPARLICGDCYEVHLDKV--LADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 135 ~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.....-..++.|.+.|+..+...+. +......++|...|+++=+|. +...-.++|.++...++||..|++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 0001224578999999987664321 111236889988888865533 3456688999999999999987653
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.57 E-value=2 Score=36.96 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=71.8
Q ss_pred CCCEEEEecCCccccHHHHHHc-----CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....|+|+|.-.|+-++.++.. ....|+++||+-..++.+..+.. .+.|+.++..+.....
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p--------------~i~f~egss~dpai~e 134 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVP--------------DILFIEGSSTDPAIAE 134 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCC--------------CeEEEeCCCCCHHHHH
Confidence 4578999999999977776652 23479999998766555443332 5999999887654311
Q ss_pred cc--CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 VL--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.. ...+.--+.+|.-+-|++ +...+-|+....+|..|-++++.-
T Consensus 135 qi~~~~~~y~kIfvilDsdHs~----~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 135 QIRRLKNEYPKIFVILDSDHSM----EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred HHHHHhcCCCcEEEEecCCchH----HHHHHHHHHhhhHhhcCceEEEec
Confidence 10 012333455666677765 777888888999999999987653
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.2 Score=43.46 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=65.0
Q ss_pred CCEEEEecCCccccHHHH--HHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 85 GDVVLDLACGKGGDLIKW--DKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l--~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
...++|+|.|.|...... +-. ....++.||.|..|...+...... +..+ ....-.++.+...- +|..
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~--g~~~v~~~~~~r~~---~pi~---- 270 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHI--GEPIVRKLVFHRQR---LPID---- 270 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhc--Cchhccccchhccc---CCCC----
Confidence 457888988876543322 222 244699999999999998887653 0000 00000011111110 1211
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHH-HHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALAN-VSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~-i~~~LkpgG~li~~~~ 207 (372)
....||+|+|.+.++++-... ......++ +.+..++||++++.-+
T Consensus 271 ~~~~yDlvi~ah~l~~~~s~~-~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 271 IKNGYDLVICAHKLHELGSKF-SRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred cccceeeEEeeeeeeccCCch-hhhhhhHHHHHhccCCCceEEEEec
Confidence 345699999999999875544 34444444 5567788998876544
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=91.30 E-value=1 Score=45.28 Aligned_cols=44 Identities=32% Similarity=0.502 Sum_probs=35.0
Q ss_pred CCCEEEEecCCccccHHHHHHc-----CCCEEEEEeCChHHHHHHHHHh
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
|+..|.|+.||+|+++...... ....++|.+....+...|+...
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 5679999999999988765431 1235899999999999998874
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.5 Score=40.76 Aligned_cols=101 Identities=18% Similarity=0.068 Sum_probs=62.5
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc---
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--- 155 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--- 155 (372)
..+++.+||-+|+|+ |..+..+++. +..+|+.+|+++.-++.|++... .+...........
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga--------------~~~~~~~~~~~~~~~~ 231 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGA--------------TVTDPSSHKSSPQELA 231 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCC--------------eEEeeccccccHHHHH
Confidence 456899999999997 4444444443 66789999999999999998322 1111111111000
Q ss_pred --cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
....+ ....+|+++-...++ ..++.....+++||.+++..
T Consensus 232 ~~v~~~~-g~~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 232 ELVEKAL-GKKQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HHHHhhc-cccCCCeEEEccCch----------HHHHHHHHHhccCCEEEEec
Confidence 00111 224588887554443 45566678899999976654
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.5 Score=42.36 Aligned_cols=126 Identities=14% Similarity=0.134 Sum_probs=69.9
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHH----cC---C-CEEEEEeC----ChHHHHHHHHHhcCCCcccccccCCCcC
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDK----AK---I-GYYVGIDI----AEGSIEDCRTRYNGDADHHQRRKKFSFP 143 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~----~~---~-~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 143 (372)
++....-...-+|+|+|.|.|.--..++. .. + -++|||+. +...++.+.+++.+.+.. -++++.
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~----lgv~fe 177 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARS----LGVPFE 177 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHH----cCccEE
Confidence 44444444667899999999974333332 21 2 25999999 888888888877643211 233333
Q ss_pred eEEE-ECcCcccccccccCCCCCeeEEEecccccccCCCH---HHHHHHHHHHHHhcCCCcEEEEE
Q 017369 144 ARLI-CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE---ARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 144 ~~~~-~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~---~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.+ ..+..++.....-..++.+=+|-|.+.+|++.+.. .++...+-...+.|+|.-++++.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 3332 22333332111111235566666788889885221 12333444555678998655543
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.42 Score=44.80 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=50.9
Q ss_pred EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCe
Q 017369 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~f 166 (372)
+|+|+.||-|++..-+...+...+.++|+++.+.+.-+.++. ....+|+.++... .+ +. .+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------------~~~~~Di~~~~~~-~l-~~-~~ 62 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------------EVICGDITEIDPS-DL-PK-DV 62 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------------EEEESHGGGCHHH-HH-HH-T-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------------ccccccccccccc-cc-cc-cc
Confidence 799999999999999888887668999999998887777652 5688898877642 11 22 59
Q ss_pred eEEEecc
Q 017369 167 DICSCQF 173 (372)
Q Consensus 167 D~V~~~~ 173 (372)
|+++...
T Consensus 63 D~l~ggp 69 (335)
T PF00145_consen 63 DLLIGGP 69 (335)
T ss_dssp SEEEEE-
T ss_pred eEEEecc
Confidence 9998864
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.41 Score=43.44 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCC-CCCEEEEecCCccccHHHHHHc---------CCCEEEEEeCChHHHHHHHHHhcC
Q 017369 71 NWIKSVLVQLYAR-RGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 71 ~~~k~~l~~~~~~-~~~~VLDlGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
+|+.........+ ...+|+|+|+|+|.++..++.. ...+|+-||+|+.+.+..++++..
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4555555555322 3479999999999988877662 124799999999999998888764
|
; PDB: 4F3N_A 1ZKD_B. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.39 Score=45.23 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=48.8
Q ss_pred EEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCee
Q 017369 88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD 167 (372)
Q Consensus 88 VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD 167 (372)
|+|+.||-|++..-+...+..-+.++|+++.+++.-+.++.. .++.+|+.++...+ -..+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~---------------~~~~~Di~~~~~~~----~~~~d 61 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN---------------KVPFGDITKISPSD----IPDFD 61 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC---------------CCCccChhhhhhhh----CCCcC
Confidence 689999999999888777765577999999988887776641 33567777655321 13578
Q ss_pred EEEecc
Q 017369 168 ICSCQF 173 (372)
Q Consensus 168 ~V~~~~ 173 (372)
+++...
T Consensus 62 vl~gg~ 67 (315)
T TIGR00675 62 ILLGGF 67 (315)
T ss_pred EEEecC
Confidence 887754
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.17 E-value=3 Score=43.54 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=61.0
Q ss_pred CCCCEEEEecCCccccHHHHHH-c-------C-----CCEEEEEeCCh---HHHHHHHHHhcCCCccc---c-c----cc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDK-A-------K-----IGYYVGIDIAE---GSIEDCRTRYNGDADHH---Q-R----RK 138 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~-~-------~-----~~~v~gvD~s~---~~l~~a~~~~~~~~~~~---~-~----~~ 138 (372)
.+.-+|||+|-|+|........ . . .-+++++|..+ +.+..+.+.+....... . . ..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3457999999999984433321 1 1 12688999644 33333322211100000 0 0 00
Q ss_pred CC--------CcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHH-HHHHHHHHHHhcCCCcEEEEE
Q 017369 139 KF--------SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 139 ~~--------~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~-~~~~l~~i~~~LkpgG~li~~ 205 (372)
++ ...+++..+|+.+.-- . ....||+++....--.- +++- -..+|+.++++++|||.+.--
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~-~---~~~~~d~~~lD~FsP~~--np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLP-Q---LDARADAWFLDGFAPAK--NPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHH-h---ccccccEEEeCCCCCcc--ChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 10 1245566788764211 0 12569999875321100 0010 157999999999999988633
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=1 Score=41.70 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=39.4
Q ss_pred CeEEEECcCcccccccccCCCCCeeEEEeccc--c--ccc-----CCCH---HHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFA--M--HYS-----WSTE---ARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 143 ~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~--l--~~~-----~~~~---~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
...++++|+.+.. ..+ ++++||+|++.-- + .+. +... .-....+.++.++|||||.+++...
T Consensus 8 ~~~i~~gD~~~~l--~~l-~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 8 AKTIIHGDALTEL--KKI-PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCEEEeccHHHHH--Hhc-ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3567899987742 111 5689999999532 1 100 0000 1235788999999999999887543
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.8 Score=38.63 Aligned_cols=92 Identities=10% Similarity=-0.048 Sum_probs=56.7
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...+++.+||=.|+|. |..+..+++.....+++++.+++-++.|++.... .++ |..+.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~---------------~vi--~~~~~---- 219 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA---------------SAG--GAYDT---- 219 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc---------------eec--ccccc----
Confidence 4567889999999864 3344555555445799999999888887764321 111 11111
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+.+|+++..-.. ...+....+.|++||.+++.
T Consensus 220 ---~~~~~d~~i~~~~~----------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 220 ---PPEPLDAAILFAPA----------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred ---CcccceEEEECCCc----------HHHHHHHHHhhCCCcEEEEE
Confidence 12357866532211 13577788999999998653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.93 Score=45.38 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=59.4
Q ss_pred CCCEEEEecCCcc-ccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc---------
Q 017369 84 RGDVVLDLACGKG-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--------- 153 (372)
Q Consensus 84 ~~~~VLDlGcG~G-~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--------- 153 (372)
++.+||=+|||.= ..+..++......|+++|.++..++.++. +. ..++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG---------------a~~v~v~~~e~g~~~~gYa 226 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG---------------AEFLELDFKEEGGSGDGYA 226 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---------------CeEEeccccccccccccce
Confidence 5689999999974 44445555444579999999998877765 22 1222222110
Q ss_pred --c--ccc----ccc-CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 154 --V--HLD----KVL-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 154 --~--~~~----~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+ ++. ..+ ..-..+|+|++.-.+.-- ..+.-+.+++.+.+|||+.++
T Consensus 227 ~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~----~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 227 KVMSEEFIAAEMELFAAQAKEVDIIITTALIPGK----PAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred eecCHHHHHHHHHHHHHHhCCCCEEEECcccCCC----CCCeeehHHHHhhCCCCCEEE
Confidence 0 000 000 012569999876543321 223346778899999998865
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=89.65 E-value=3.2 Score=32.27 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=60.2
Q ss_pred CCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEE
Q 017369 93 CGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC 169 (372)
Q Consensus 93 cG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V 169 (372)
||.|..+..+++ .....|+.+|.+++.++.++... +.++.+|..+....... .-..+|.|
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----------------~~~i~gd~~~~~~l~~a-~i~~a~~v 66 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----------------VEVIYGDATDPEVLERA-GIEKADAV 66 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----------------SEEEES-TTSHHHHHHT-TGGCESEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----------------cccccccchhhhHHhhc-CccccCEE
Confidence 444555555543 33347999999999988876542 56889999875432221 23578877
Q ss_pred EecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 170 SCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
++... .+.....+....+.+.|...++..+.+.+.
T Consensus 67 v~~~~-------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 67 VILTD-------DDEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp EEESS-------SHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred EEccC-------CHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 76432 134445556666778888899888877653
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.3 Score=37.97 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=56.1
Q ss_pred CCC-EEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc-
Q 017369 84 RGD-VVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL- 160 (372)
Q Consensus 84 ~~~-~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~- 160 (372)
++. .|+.||||-=.....+.... ...++-+|. |++++.-++.+..... ....+.+++..|+.+..+.+.+
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~------~~~~~~~~v~~Dl~~~~~~~~L~ 149 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGA------RPPANYRYVPADLRDDSWIDALP 149 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHH------HHHEESSEEES-TTSHHHHHHHH
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcc------cCCcceeEEeccccchhhHHHHH
Confidence 444 89999998755444444332 335666665 4456555555543211 0011345688998864432222
Q ss_pred ---CCCCCeeEEEecccccccCCCHHHHHHHHHHH
Q 017369 161 ---ADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (372)
Q Consensus 161 ---~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i 192 (372)
......-++++-.++.|+ +.+....+|+.+
T Consensus 150 ~~g~~~~~ptl~i~Egvl~Yl--~~~~~~~ll~~i 182 (183)
T PF04072_consen 150 KAGFDPDRPTLFIAEGVLMYL--SPEQVDALLRAI 182 (183)
T ss_dssp HCTT-TTSEEEEEEESSGGGS---HHHHHHHHHHH
T ss_pred HhCCCCCCCeEEEEcchhhcC--CHHHHHHHHHHh
Confidence 134667788899999998 777788887765
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.7 Score=38.78 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=36.5
Q ss_pred EEEECcCccc--ccccccCCCCCeeEEEecccc----cccCC-------CHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 145 RLICGDCYEV--HLDKVLADDAPFDICSCQFAM----HYSWS-------TEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 145 ~~~~~D~~~~--~~~~~~~~~~~fD~V~~~~~l----~~~~~-------~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++++|+.+. .+ +++++|+|+..--. .+... ..+-....+.+++++|||||.+++..
T Consensus 3 ~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5678888654 33 67889998886211 10000 01224678899999999999887543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.95 E-value=2.7 Score=39.86 Aligned_cols=91 Identities=14% Similarity=0.064 Sum_probs=55.4
Q ss_pred CCCCCEEEEecCCccc-cHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 82 ARRGDVVLDLACGKGG-DLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~-~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
..++.+||=+|||.=+ .+..+++. +..+|+++|.+++-++.|+. +. ... ..+ +..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---------------~~~-~~~--~~~--- 218 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---------------ETY-LID--DIP--- 218 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---------------cee-ehh--hhh---
Confidence 4678999999987533 34455543 34579999999988877764 21 000 001 111
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
....+|+|+-.-.-. .....+....+.|++||.+++
T Consensus 219 ---~~~g~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 219 ---EDLAVDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred ---hccCCcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEE
Confidence 122488887533210 012467788889999999764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.49 Score=43.15 Aligned_cols=39 Identities=21% Similarity=0.051 Sum_probs=31.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHH
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l 120 (372)
...+.+|||+|||.|.........+...+...|++.+.+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 346899999999999887777666656788999988776
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.49 E-value=25 Score=32.82 Aligned_cols=37 Identities=16% Similarity=0.028 Sum_probs=29.4
Q ss_pred eeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChh
Q 017369 265 WIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPE 301 (372)
Q Consensus 265 ~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~ 301 (372)
...+.+..++-+.++|++-|...++.++|+.+++..+
T Consensus 254 ~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n~~lp~~E 290 (335)
T KOG2918|consen 254 TYNSIESQRSRFLKAGWEYVIAVDMNEIYNFSLPEAE 290 (335)
T ss_pred hcccHHHHHHHHHhcCCceeehhhHHHHHHhhCCHHH
Confidence 3556777778888999999999999999986665433
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=87.43 E-value=3.3 Score=38.90 Aligned_cols=95 Identities=23% Similarity=0.267 Sum_probs=56.2
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
++.+||-.|||. |..+..+++.... .+++++.++...+.+++... -.++. .....+.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~---------------~~vi~--~~~~~~~~~~~ 227 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA---------------DETVN--LARDPLAAYAA 227 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC---------------CEEEc--CCchhhhhhhc
Confidence 788999998875 5566666665443 78999999888876654211 01111 11100101010
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+.+|+|+..... ...++.+.+.|+++|.++..
T Consensus 228 ~~~~vd~vld~~g~----------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 228 DKGDFDVVFEASGA----------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred cCCCccEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 12458999854331 13467788999999998743
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=87.41 E-value=7.9 Score=35.03 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCEEEEecCCccccHHHHH---Hc---CCCEEEEEeCChH--------------------------HHHHHHHHhcCCCc
Q 017369 85 GDVVLDLACGKGGDLIKWD---KA---KIGYYVGIDIAEG--------------------------SIEDCRTRYNGDAD 132 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~---~~---~~~~v~gvD~s~~--------------------------~l~~a~~~~~~~~~ 132 (372)
..-|+|+||-.|+.+..+. .. ...+++++|.=+. .++..++++...
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~-- 152 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY-- 152 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT--
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc--
Confidence 4579999999998654432 21 2335888885332 223333333221
Q ss_pred ccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.-...++.++.|.+.+. ++.. +...+-++.+-.-+. +.....|..++..|.|||++++.-.+.
T Consensus 153 -----gl~~~~v~~vkG~F~dT-Lp~~--p~~~IAll~lD~DlY------esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 153 -----GLLDDNVRFVKGWFPDT-LPDA--PIERIALLHLDCDLY------ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp -----TTSSTTEEEEES-HHHH-CCC---TT--EEEEEE---SH------HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred -----CCCcccEEEECCcchhh-hccC--CCccEEEEEEeccch------HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 11245799999988552 2111 233444443333332 567889999999999999999876554
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.3 Score=35.18 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=54.2
Q ss_pred ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--ccccccCCCCCeeEEEec
Q 017369 95 KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDKVLADDAPFDICSCQ 172 (372)
Q Consensus 95 ~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~~~~~fD~V~~~ 172 (372)
.|..+..+++....+|+++|.++.-++.+++... ..++..+-.+. .+.+ ......+|+|+-.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga---------------~~~~~~~~~~~~~~i~~-~~~~~~~d~vid~ 65 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA---------------DHVIDYSDDDFVEQIRE-LTGGRGVDVVIDC 65 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE---------------SEEEETTTSSHHHHHHH-HTTTSSEEEEEES
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc---------------ccccccccccccccccc-ccccccceEEEEe
Confidence 4666777777655899999999999999876442 12222221110 0001 1133589999754
Q ss_pred ccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 173 FAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
-.. ...++....+|+|+|.+++.-
T Consensus 66 ~g~----------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 66 VGS----------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp SSS----------HHHHHHHHHHEEEEEEEEEES
T ss_pred cCc----------HHHHHHHHHHhccCCEEEEEE
Confidence 331 257788889999999987543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=87.18 E-value=5.2 Score=35.76 Aligned_cols=96 Identities=26% Similarity=0.288 Sum_probs=58.8
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc--
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-- 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-- 159 (372)
.++.+||..|+|. |..+..++.....++++++.++...+.++.... ..++ +.........
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~---------------~~~~--~~~~~~~~~~~~ 195 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA---------------DHVI--DYKEEDLEEELR 195 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC---------------ceec--cCCcCCHHHHHH
Confidence 6789999999986 666666666555689999999887777754321 0111 1111110000
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
....+.+|+|+....-. ..+..+.+.|+++|.++..
T Consensus 196 ~~~~~~~d~vi~~~~~~----------~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 196 LTGGGGADVVIDAVGGP----------ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred HhcCCCCCEEEECCCCH----------HHHHHHHHhcccCCEEEEE
Confidence 01245799998543210 3456677889999998754
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=86.98 E-value=4.5 Score=38.44 Aligned_cols=94 Identities=12% Similarity=0.003 Sum_probs=54.9
Q ss_pred CCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeC---ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDI---AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..++.+||=+|||. |..+..+++....+|++++. ++.-++.+++.. +..+ +..+....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~G----------------a~~v--~~~~~~~~ 231 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELG----------------ATYV--NSSKTPVA 231 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcC----------------CEEe--cCCccchh
Confidence 35788999999875 44555565554447999987 666666665421 1111 11111100
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+ ....+.+|+|+-...- ...+....+.|++||.+++
T Consensus 232 ~-~~~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 232 E-VKLVGEFDLIIEATGV----------PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred h-hhhcCCCCEEEECcCC----------HHHHHHHHHHccCCcEEEE
Confidence 0 0012468988754331 1356778899999998764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=2.7 Score=43.16 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=62.4
Q ss_pred CEEEEecCCccccHHHHHHc----CC-CEEEEEeCChHHHHHHHHHhc-CCCcccccccCCCcCeEEEECcCccccccc-
Q 017369 86 DVVLDLACGKGGDLIKWDKA----KI-GYYVGIDIAEGSIEDCRTRYN-GDADHHQRRKKFSFPARLICGDCYEVHLDK- 158 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~----~~-~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~- 158 (372)
..|+-+|+|.|-+....++. +. -+|++||-++..+.....+.. ...+.. ...-.+..++++..|+.......
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n-~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQ-LAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccccccc-ccccCCCeEEEEeCcccccccccc
Confidence 46899999999876665542 22 269999999765544444432 111100 00011346999999999865321
Q ss_pred --cc---CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC----CcE
Q 017369 159 --VL---ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP----GGT 201 (372)
Q Consensus 159 --~~---~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp----gG~ 201 (372)
.. ...+++|+||+-..=. |.+-+---+.|..+.+.||+ +|+
T Consensus 781 ~~s~~~P~~~gKaDIVVSELLGS--FGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSELLGS--LGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccceehHhhhcc--cccccCCHHHHHHHHHhhhhhcccccc
Confidence 00 0114799998732110 11112223456666666665 665
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.93 E-value=0.55 Score=45.12 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=51.1
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC-eEEEECcCcc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYE 153 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~ 153 (372)
..++|..|.|+.||-|-+...++..+ +.|++.|+++++++..+.+..- +++... ++.+..|+.+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~l--------Nkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKL--------NKVDPSAIEIFNMDAKD 310 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccc--------cccchhheeeecccHHH
Confidence 34789999999999999999887665 6999999999999999988763 333333 7777777654
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.69 E-value=3.7 Score=37.63 Aligned_cols=98 Identities=16% Similarity=0.029 Sum_probs=55.3
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+||=+|+|. |..+..+++. +...|+++|.++.-++.|++.... .++..+-.......
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~---------------~~i~~~~~~~~~~~ 181 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT---------------ALAEPEVLAERQGG 181 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc---------------EecCchhhHHHHHH
Confidence 345788999998864 3344455554 443589999999888777653210 11110000000000
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.. ....+|+|+-...- ...+..+.+.|+++|.++.
T Consensus 182 ~~-~~~g~d~vid~~G~----------~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 182 LQ-NGRGVDVALEFSGA----------TAAVRACLESLDVGGTAVL 216 (280)
T ss_pred Hh-CCCCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEE
Confidence 00 23468988753221 1356777889999999874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=86.62 E-value=2.6 Score=41.82 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=36.1
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHh
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
..+++|+.||-|++..-+...+...|.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4699999999999999887777756889999998887776665
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=86.30 E-value=1.7 Score=40.22 Aligned_cols=101 Identities=14% Similarity=0.287 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHHHHhCCCCCE--EEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC
Q 017369 67 KKLNNWIKSVLVQLYARRGDV--VLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143 (372)
Q Consensus 67 ~~~~~~~k~~l~~~~~~~~~~--VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 143 (372)
-++-.|+..+|..-....+.. =+|||.|...+-..+...... ..+++|+....+..|+.+..+ .++...
T Consensus 83 ~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~q--------n~lss~ 154 (419)
T KOG2912|consen 83 LNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQ--------NNLSSL 154 (419)
T ss_pred hhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccc--------cccccc
Confidence 356678877776543333333 378887775433333222233 478999999999999998875 344555
Q ss_pred eEEEECcCcccccccccC--CCCCeeEEEecccc
Q 017369 144 ARLICGDCYEVHLDKVLA--DDAPFDICSCQFAM 175 (372)
Q Consensus 144 ~~~~~~D~~~~~~~~~~~--~~~~fD~V~~~~~l 175 (372)
+.+++....+..+.+.+. ++..||.+.|+--+
T Consensus 155 ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 155 IKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred eeeEEecchhhcchhhhccCccceeeEEecCCch
Confidence 666655433222211110 23468888887543
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.27 E-value=2.1 Score=40.54 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=52.8
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
..+++|+.||-|++..-+...+..-+.++|+++.+++.-+.+... ..++..|+........ ...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~--------------~~~~~~di~~~~~~~~--~~~ 66 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH--------------GDIILGDIKELDGEAL--RKS 66 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC--------------CceeechHhhcChhhc--ccc
Confidence 358999999999999888777775688999999999888877651 3456666665443111 111
Q ss_pred CeeEEEecc
Q 017369 165 PFDICSCQF 173 (372)
Q Consensus 165 ~fD~V~~~~ 173 (372)
.+|+++...
T Consensus 67 ~~DvligGp 75 (328)
T COG0270 67 DVDVLIGGP 75 (328)
T ss_pred CCCEEEeCC
Confidence 789998765
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=85.80 E-value=1.6 Score=42.17 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=49.7
Q ss_pred cCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 142 ~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++.++.+++.+.-- . . +++++|.++.+-.+.|+ +.+...+.++++.+.++|||+++.-.
T Consensus 275 drv~i~t~si~~~L~-~-~-~~~s~~~~vL~D~~Dwm--~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLR-R-L-PPGSFDRFVLSDHMDWM--DPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHH-h-C-CCCCeeEEEecchhhhC--CHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 578999988876421 1 1 57899999999999998 77899999999999999999998654
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.51 E-value=2.5 Score=40.27 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=32.6
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHH
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 125 (372)
+-..|+|+|.|.|.++..+.-...-.|++||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 557899999999987776655545479999999877766654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=85.24 E-value=2.6 Score=40.73 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=36.3
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHh
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
..+.+.++++||-|++|-. ..+.++..++.+|++||+++..+...+-+.
T Consensus 29 ~aL~i~~~d~vl~ItSaG~-N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGC-NALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHhCCCCCCeEEEEccCCc-hHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 3456789999999966554 555556677789999999998877655443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.04 E-value=3.2 Score=38.56 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=69.4
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+..+|.-||.|. |..+.+++....+.|+-+|+|..-+.+...-+. .++...-.+..++.. .
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-------------~rv~~~~st~~~iee-----~ 228 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-------------GRVHTLYSTPSNIEE-----A 228 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-------------ceeEEEEcCHHHHHH-----H
Confidence 346788888885 666777776667789999999888777766553 245555555444332 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
-...|+|+..--+-- ...+.-..+++.+.||||++++
T Consensus 229 v~~aDlvIgaVLIpg----akaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 229 VKKADLVIGAVLIPG----AKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred hhhccEEEEEEEecC----CCCceehhHHHHHhcCCCcEEE
Confidence 367899987654432 3567788899999999999876
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=85.00 E-value=5.1 Score=38.39 Aligned_cols=97 Identities=19% Similarity=0.135 Sum_probs=56.1
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--cc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HL 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~ 156 (372)
.+.++.+||=.|+|. |..+..+++.... .|+++|.++.-++.+++... ..++..+-.+. .+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga---------------~~~i~~~~~~~~~~i 252 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA---------------TATVNAGDPNAVEQV 252 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC---------------ceEeCCCchhHHHHH
Confidence 456788999999864 4445555554443 69999999998888865321 11111110000 00
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.. . ..+.+|+|+-.-.- ...+....+.|++||.++.
T Consensus 253 ~~-~-~~~g~d~vid~~G~----------~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 253 RE-L-TGGGVDYAFEMAGS----------VPALETAYEITRRGGTTVT 288 (371)
T ss_pred HH-H-hCCCCCEEEECCCC----------hHHHHHHHHHHhcCCEEEE
Confidence 00 0 12368988753221 1355667788999999764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=84.92 E-value=5.6 Score=37.37 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=56.6
Q ss_pred HHhCCCCCEEEEecCCc-cccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-c
Q 017369 79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H 155 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~ 155 (372)
.....++.+||=+|+|. |..+..+++....+ |+++|.+++.++.+++... ..++...-.+. .
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga---------------~~~i~~~~~~~~~ 222 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA---------------DFVINSGQDDVQE 222 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---------------CEEEcCCcchHHH
Confidence 34556789999998763 33444555543445 9999999988887755321 01111110000 0
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+.. ....+|+|+-...- ...+....+.|+++|.+++.
T Consensus 223 ~~~~~-~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 223 IRELT-SGAGADVAIECSGN----------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred HHHHh-CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 00001 23469999753221 13456667889999998743
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.86 E-value=3.2 Score=38.35 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
...+.. ...++..|||.-+|+|..+...... ....+|+|+++..++.+.+|+..
T Consensus 213 ~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~-~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 213 ERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL-GRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHh-cCCCCCEEeecCCCCChHHHHHHHc-CCceEEEecCHHHHHHHHHHHHh
Confidence 334333 6789999999999999877766544 44799999999999999999874
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=83.30 E-value=4.5 Score=39.48 Aligned_cols=87 Identities=9% Similarity=0.021 Sum_probs=53.9
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|+=+|||. |......++....+|+.+|.++.-++.|+... .... +..+ .
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G----------------~~~~--~~~e-~------ 254 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG----------------YEVM--TMEE-A------ 254 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC----------------CEEc--cHHH-H------
Confidence 4789999999997 44444455444458999999988777765421 1111 1111 1
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHH-HHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALAN-VSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~-i~~~LkpgG~li~~ 205 (372)
-..+|+|+..-.. ..++.. ..+.+|+||.++..
T Consensus 255 -v~~aDVVI~atG~----------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 255 -VKEGDIFVTTTGN----------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred -HcCCCEEEECCCC----------HHHHHHHHHhcCCCCcEEEEe
Confidence 1357999864321 134444 47899999998643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=82.61 E-value=7.5 Score=36.99 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=56.5
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+||=.|||. |..+..+++.... .|+++|.++.-++.+++... -.++. ..+.....
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga---------------~~~i~--~~~~~~~~ 235 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA---------------THTVN--SSGTDPVE 235 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---------------ceEEc--CCCcCHHH
Confidence 456889999998864 4445555554443 59999999988888854321 11111 11111000
Q ss_pred ---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 ---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.......+|+|+-.-.- ...+....+.|++||.+++.
T Consensus 236 ~i~~~~~~~g~d~vid~~g~----------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 236 AIRALTGGFGADVVIDAVGR----------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HHHHHhCCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence 00022468988753221 13456677899999998753
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=82.27 E-value=16 Score=34.08 Aligned_cols=97 Identities=18% Similarity=0.078 Sum_probs=58.5
Q ss_pred HhCCCCCEEEEecCC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....++.+||-.||| .|..+..+++.....+++++.+++.++.+++... ..++...-.... ..
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~-~~ 221 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGA---------------DEVVDSGAELDE-QA 221 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCC---------------cEEeccCCcchH-Hh
Confidence 345678899999987 5666666666555589999999988887744221 011111100000 00
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+.+|+++....- ...+..+.+.|+++|.++..
T Consensus 222 ---~~~~~d~vi~~~~~----------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 222 ---AAGGADVILVTVVS----------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred ---ccCCCCEEEECCCc----------HHHHHHHHHhcccCCEEEEE
Confidence 12468988753221 13567778899999988754
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=81.05 E-value=8.7 Score=35.84 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=58.0
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
....++.+||-.|+|. |..+..+++..... +++++.+++..+.+++... ..++..+-.+....
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~ 219 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA---------------TETVDPSREDPEAQ 219 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC---------------eEEecCCCCCHHHH
Confidence 3456788999998753 55556666554444 8899999988877754321 11221111110000
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.......+|+|+....- ...+..+.+.|+++|.++..
T Consensus 220 -~~~~~~~vd~v~~~~~~----------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 220 -KEDNPYGFDVVIEATGV----------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred -HHhcCCCCcEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence 00023569999854221 14567778889999998743
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.91 E-value=45 Score=31.46 Aligned_cols=181 Identities=11% Similarity=0.023 Sum_probs=90.2
Q ss_pred CEEEEecCCcc--ccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-----cCeEEEECcCccccccc
Q 017369 86 DVVLDLACGKG--GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-----FPARLICGDCYEVHLDK 158 (372)
Q Consensus 86 ~~VLDlGcG~G--~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~ 158 (372)
.+|-=||+|+= +++..++..+ -.|+.+|.+++.++.++.++........ ..+.. .++.+. .|+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~-~~l~~----- 79 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAPGAEAALRANVANAWPALE-RQGLAPGASPARLRFV-ATIEA----- 79 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCChhhHHhhceec-CCHHH-----
Confidence 57888999852 2444444444 3899999999988877665431100000 00000 111211 11110
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhh
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFA 238 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~ 238 (372)
.-...|+|+- .+.++.+-...++.++.+.++|+..+..++.. -....+.+.. .....+.-.+|-+.
T Consensus 80 ---av~~aDlViE-----avpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~--l~~s~la~~~--~~p~R~~g~HffnP-- 145 (321)
T PRK07066 80 ---CVADADFIQE-----SAPEREALKLELHERISRAAKPDAIIASSTSG--LLPTDFYARA--THPERCVVGHPFNP-- 145 (321)
T ss_pred ---HhcCCCEEEE-----CCcCCHHHHHHHHHHHHHhCCCCeEEEECCCc--cCHHHHHHhc--CCcccEEEEecCCc--
Confidence 1145677764 33455566778899999999998744433331 1222333211 11122223332211
Q ss_pred hcccCCCCCceeeEEEEecccccCce-eeeehHHHHHHHHHcCcEEEEe-cChhHHHHHHhCCh
Q 017369 239 DKKFKSSRPFGIQYKFHLEDAVDCPE-WIVPFHIFKSLAEEYDLELVFV-KNSHEFVHEYLKKP 300 (372)
Q Consensus 239 ~~~f~~~~~~g~~y~~~l~~~~~~~e-~l~~~~~l~~l~~~~Gf~~v~~-~~~~~~~~~~~~~~ 300 (372)
+.-. .+-+.+.-+. ---..+...++++..|.+.|.. ++.+-|+...+..+
T Consensus 146 --------~~~~----pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a 197 (321)
T PRK07066 146 --------VYLL----PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEA 197 (321)
T ss_pred --------cccC----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHH
Confidence 1100 1111111000 0112345678888999999887 67888876655333
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.78 E-value=9.5 Score=34.60 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=57.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.++..-.|+|...|+++..+.+.+- .|++||-.+ |.+. ... ...++-...|-....-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-ma~s---L~d------------tg~v~h~r~DGfk~~P----- 266 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-MAQS---LMD------------TGQVTHLREDGFKFRP----- 266 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccch-hhhh---hhc------------ccceeeeeccCccccc-----
Confidence 36899999999999999999987655 899999754 2221 111 2246666667655431
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg 199 (372)
.....|-.+|..+ +.+..+-.-+...|..|
T Consensus 267 ~r~~idWmVCDmV--------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 267 TRSNIDWMVCDMV--------EKPARVAALIAKWLVNG 296 (358)
T ss_pred CCCCCceEEeehh--------cCcHHHHHHHHHHHHcc
Confidence 2467888888765 33445555555555544
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.70 E-value=5 Score=35.33 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=46.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
.-....|.+||.|.|+.+..++.++..++..++++...+.-.+...+. .+.+..++++|+.....
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EA----------a~~~~~IHh~D~LR~~I 112 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEA----------APGKLRIHHGDVLRFKI 112 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhc----------CCcceEEeccccceehH
Confidence 335689999999999999999988888888888887665544333221 02356667777765544
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=80.54 E-value=13 Score=33.69 Aligned_cols=95 Identities=19% Similarity=0.094 Sum_probs=56.8
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
....++.+||-.|||. |..+..++...... |++++.+++..+.+++.... -.+... .....
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~--------------~~~~~~--~~~~~- 155 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA--------------DPVAAD--TADEI- 155 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC--------------cccccc--chhhh-
Confidence 3456788999998875 55556665554445 99999999888776653200 000100 00001
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
....+|+|+..... ...+....+.|+++|.++..
T Consensus 156 ----~~~~~d~vl~~~~~----------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 156 ----GGRGADVVIEASGS----------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred ----cCCCCCEEEEccCC----------hHHHHHHHHHhcCCcEEEEE
Confidence 23568988753221 13567778889999998743
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.50 E-value=12 Score=35.49 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=59.4
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC----cCccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG----DCYEV 154 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----D~~~~ 154 (372)
.+.++.+||=.|+ |.|..+..+++....+|++++.+++..+.+++.+.. -.++.. +..+
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa--------------~~vi~~~~~~~~~~- 219 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF--------------DEAFNYKEEPDLDA- 219 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC--------------CEEEECCCcccHHH-
Confidence 4678899999998 356677777776556899999998877777643320 111211 1110
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.... . ..+.+|+|+-... ...+....+.|++||.++..
T Consensus 220 ~i~~-~-~~~gvD~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 220 ALKR-Y-FPEGIDIYFDNVG-----------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHH-H-CCCCcEEEEECCC-----------HHHHHHHHHHhccCCEEEEE
Confidence 0000 1 1246898874322 13567788899999998743
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.49 E-value=11 Score=32.27 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=58.5
Q ss_pred EEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC--------CcCeEEEECcCccccc
Q 017369 87 VVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVHL 156 (372)
Q Consensus 87 ~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~ 156 (372)
+|.=+|+|+=+ ++..++.. ...|+.+|.+++.++.+++++........+...+ ..++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 46668888633 33333333 4489999999999999888765311100011111 11333 23343321
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
...|+|+- -+.++.+-...+++++.+.+.|+-.|.-.+.
T Consensus 77 -------~~adlViE-----ai~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 77 -------VDADLVIE-----AIPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp -------CTESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred -------hhhheehh-----hccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 25777753 3345667789999999999999987765553
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 372 | ||||
| 3bgv_A | 313 | Crystal Structure Of Mrna Cap Guanine-N7 Methyltran | 2e-46 | ||
| 1ri1_A | 298 | Structure And Mechanism Of Mrna Cap (Guanine N-7) M | 7e-39 | ||
| 2vdw_A | 302 | Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12 | 4e-06 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 3e-04 |
| >pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sah Length = 313 | Back alignment and structure |
|
| >pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7) Methyltransferase Length = 298 | Back alignment and structure |
|
| >pdb|2VDW|A Chain A, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of The Vaccinia Virus Mrna Capping Enzyme Length = 302 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 258 bits (659), Expect = 1e-84
Identities = 102/316 (32%), Positives = 157/316 (49%), Gaps = 31/316 (9%)
Query: 30 FLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVL 89
F +D++ + ++ +HY+ + E R+ S I+++ NN+IK+ L++LY +RGD VL
Sbjct: 10 FRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVL 69
Query: 90 DLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
DL CGKGGDL+K+++A IG Y G+DIAE SI D R R K F
Sbjct: 70 DLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARN--------MKRRFKVFFRAQ 121
Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
D Y H+D FD+ S QF+ HY++ST A N++ LRPGG FI T+P
Sbjct: 122 DSYGRHMDL----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177
Query: 210 NVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV-DCPEWIVP 268
+VI+++ ++ + N Y I L +K +Y+F L D+V +C E+ V
Sbjct: 178 DVILERYKQGR---MSNDFYKIEL-----EKMEDVPMESVREYRFTLLDSVNNCIEYFVD 229
Query: 269 FHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQSTLSADEWE 328
F + L LV K +F + ++ EL +++G L+ +E E
Sbjct: 230 FTRMVDGFKRLGLSLVERKGFIDFYEDEGRR--NPELSKKMGL--------GCLTREESE 279
Query: 329 VAYLYLAFVLRKRGQP 344
V +Y V RK
Sbjct: 280 VVGIYEVVVFRKLVPE 295
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 249 bits (635), Expect = 7e-81
Identities = 108/317 (34%), Positives = 158/317 (49%), Gaps = 44/317 (13%)
Query: 61 SPIIHLKKLNNWIKSVLVQLYAR-------RGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113
S I +L+ NNW+KSVL+ + R VLDL CGKGGDL+KW K +I V
Sbjct: 4 SRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCT 63
Query: 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLADDAPFDICSCQ 172
DIA+ S++ C+ RY ++R ++ F A I D + L DK FDICSCQ
Sbjct: 64 DIADVSVKQCQQRYEDM--KNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQ 121
Query: 173 FAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIR 232
F HYS+ + +A L N L PGG FIGT P++ +I++L E + GN +Y ++
Sbjct: 122 FVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVK 181
Query: 233 LDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEF 292
++ FG +Y F+LE VD PE++V F + +A++Y+++LV+ K EF
Sbjct: 182 FQKK------GDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEF 235
Query: 293 VHEYLKKPEYIELMRRLGALGDGNQDQS----------------------------TLSA 324
E +K E L++R+ AL ++S TLS
Sbjct: 236 YEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSK 295
Query: 325 DEWEVAYLYLAFVLRKR 341
EWE +YL F K+
Sbjct: 296 SEWEATSIYLVFAFEKQ 312
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 245 bits (625), Expect = 2e-79
Identities = 58/312 (18%), Positives = 109/312 (34%), Gaps = 25/312 (8%)
Query: 44 ADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARR-------GDVVLDLACGKG 96
AD + + + L L+N++K++L+ +Y + VL + G G
Sbjct: 2 ADKFRLNPEVSYFTNK-RTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNG 60
Query: 97 GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK-KFSFPARLICGDCYEVH 155
DL K+ +I V D +I RYN + + KF + I D +
Sbjct: 61 ADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS 120
Query: 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215
+ +V F+I QFA+HYS+ A + N+S L GG + T D + + K
Sbjct: 121 VREVF-YFGKFNIIDWQFAIHYSFHPRHYA-TVMNNLSELTASGGKVLITTMDGDKLSKL 178
Query: 216 LREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVD--CPEWIVPFHIFK 273
+ + I + ++ + + + + E+I+ +
Sbjct: 179 TDK--------KTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIV 230
Query: 274 SLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQ----DQSTLSADEWEV 329
+ EY LV + + K M + + + D ++
Sbjct: 231 RVFNEYGFVLVDNVDFATIIERSKKFINGASTMEDRPSTRNFFELNRGAIKCEGLDVEDL 290
Query: 330 AYLYLAFVLRKR 341
Y+ +V KR
Sbjct: 291 LSYYVVYVFSKR 302
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 8e-14
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 22/169 (13%)
Query: 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNG 129
++++ + + R VLDLACG G ++ A+ GY V G+D+ E + R
Sbjct: 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLEL--AERGYEVVGLDLHEEMLRVAR----- 80
Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRA 188
++ K+ + + GD E+ FD + F + Y E R+
Sbjct: 81 -----RKAKERNLKIEFLQGDVLEIAFKN------EFDAVTMFFSTIMY--FDEEDLRKL 127
Query: 189 LANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEF 237
+ V+ L+PGG FI P + V G I E
Sbjct: 128 FSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREV 176
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 2e-13
Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 24/145 (16%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
L+ A RG +LD CG+G +K G+ V G D+ I+ + +
Sbjct: 39 LIDAMAPRGAKILDAGCGQGRIGGYL--SKQGHDVLGTDLDPILIDYAKQDFPE------ 90
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
AR + GD + + FD+ + + E ALAN+
Sbjct: 91 --------ARWVVGDLSVDQI-----SETDFDLIVSAGNVMG-FLAEDGREPALANIHRA 136
Query: 196 LRPGGTF-IGTMPDANVIIKKLREV 219
L G IG + EV
Sbjct: 137 LGADGRAVIGFGAGRGWVFGDFLEV 161
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 6e-13
Identities = 32/213 (15%), Positives = 68/213 (31%), Gaps = 27/213 (12%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
D LDLACG G +D+++ + +
Sbjct: 30 KCVENNLVFDDYLDLACGTGNLTENL--CPKFKNTWAVDLSQEMLSEAE----------N 77
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA 194
+ + RL C D +++++ FD+ +C + +Y ++ VS
Sbjct: 78 KFRSQGLKPRLACQDISNLNINR------KFDLITCCLDSTNY-IIDSDDLKKYFKAVSN 130
Query: 195 LLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI---RLDEEFADKKFKSSRPFGIQ 251
L+ GG FI + + + L + + V++ + +++ G
Sbjct: 131 HLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEF 190
Query: 252 YKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELV 284
YK E + E + + L ++
Sbjct: 191 YKRFDE---EHEERAYKEEDIEKYLKHGQLNIL 220
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 29/194 (14%), Positives = 52/194 (26%), Gaps = 34/194 (17%)
Query: 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLAC 93
E +F A Y + I K++ + +L + + VL+
Sbjct: 4 EFNGLFDE-WAHTY--------DSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGV 54
Query: 94 GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153
G G+L GI+ + + + + + GD
Sbjct: 55 GT-GNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKE-------------FSITEGDFLS 100
Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI---GTMPDAN 210
D +A H T+ A+A S LL GG + D +
Sbjct: 101 ------FEVPTSIDTIVSTYAFH--HLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD 152
Query: 211 VIIKKLREVEGLAI 224
K + +
Sbjct: 153 AYDKTVEAAKQRGF 166
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 1e-12
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 17/129 (13%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHH 134
+Q + R G VV + CG +L+ D + VGID +++
Sbjct: 111 ALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLA------- 163
Query: 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194
+ L D ++ L +D+ + Y +AR
Sbjct: 164 -AGHALAGQITLHRQDAWK------LDTREGYDLLTSNGLNIYE-PDDARVTELYRRFWQ 215
Query: 195 LLRPGGTFI 203
L+PGG +
Sbjct: 216 ALKPGGALV 224
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 2e-12
Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 33/173 (19%)
Query: 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
E + F V+ Y + R+ P + + SV + +LDL
Sbjct: 4 SEIKRKFD-AVSGKYDEQ------RRKFIPCFD----DFYGVSVSIASVDTENPDILDLG 52
Query: 93 CGKGGDLIKW--DKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150
G G L + +K + +D++E +E + R+ G+ + I D
Sbjct: 53 AG-TGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-----------KVKYIEAD 100
Query: 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
+ ++ +D+ ++H + + ++L+ G FI
Sbjct: 101 YSKYDFEE------KYDMVVSALSIH--HLEDEDKKELYKRSYSILKESGIFI 145
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 4e-12
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 25/129 (19%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
LV+ +LD+ACG G L + K G++++E + R R
Sbjct: 33 LVRSRTPEASSLLDVACGTGTHLEHF--TKEFGDTAGLELSEDMLTHARKRLPD------ 84
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA 194
A L GD + L + F F ++ Y T A+A+ +
Sbjct: 85 --------ATLHQGDMRDFRLGR------KFSAVVSMFSSVGY-LKTTEELGAAVASFAE 129
Query: 195 LLRPGGTFI 203
L PGG +
Sbjct: 130 HLEPGGVVV 138
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 5e-12
Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 24/237 (10%)
Query: 3 RGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASP 62
H G + + ++ P H ++ + D Y T +
Sbjct: 7 HHHHSGGLVPRGSMSNQLERGPVRTPHADVLLASVGERGVLCDFYDEGAADTYRD----- 61
Query: 63 IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIE 121
+I + + VL+LA G G + +G+ V ++++ +
Sbjct: 62 LIQDADGTSEAR-EFATRTGPVSGPVLELAAGMGRLTFPF--LDLGWEVTALELSTSVLA 118
Query: 122 DCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWS 180
R R + R L+ GD LDK F +++
Sbjct: 119 AFRKRLAEAPADVRDR------CTLVQGDMSAFALDK------RFGTVVISSGSINEL-- 164
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEF 237
EA R A+V L PGG F+ ++ + + E + G S L
Sbjct: 165 DEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRH 221
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 8e-12
Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 21/120 (17%)
Query: 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
G ++DL CG G + Y +G+D++E + R
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG------------ 90
Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
D ++HL FD+ A+HY R V L PGG F+
Sbjct: 91 ITYERADLDKLHL-----PQDSFDLAYSSLALHYV----EDVARLFRTVHQALSPGGHFV 141
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-11
Identities = 48/259 (18%), Positives = 90/259 (34%), Gaps = 40/259 (15%)
Query: 42 KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
+V Y+ +Q R ++ +L++ Y ++ VLDLACG GG
Sbjct: 8 RVFPTYTDINSQEYRSRIE-----------TLEPLLMK-YMKKRGKVLDLACGVGGFSFL 55
Query: 102 WDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160
G+ V G+DI+E I R + K I GD ++
Sbjct: 56 L--EDYGFEVVGVDISEDMIRKAR----------EYAKSRESNVEFIVGDARKLSF---- 99
Query: 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVE 220
+D FD ++ + + + V +L+P G FI D ++ +L+E
Sbjct: 100 -EDKTFDYVIFIDSIVH-F-EPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESL 156
Query: 221 GLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYD 280
+ YWI + D++ ++ + + + K +
Sbjct: 157 VVGQK---YWIS--KVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEA 211
Query: 281 LELVFVKNSHEFVHEYLKK 299
E V ++ ++ Y K
Sbjct: 212 EEKV---GNYSYLTVYNPK 227
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-11
Identities = 44/285 (15%), Positives = 86/285 (30%), Gaps = 48/285 (16%)
Query: 31 LEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLD 90
+ D+ A +V Y T E + +L L VLD
Sbjct: 18 IPDQYADGEAARVWQLYIGDTRSRTAE--------------YKAWLLGLLRQHGCHRVLD 63
Query: 91 LACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
+ACG G D I + G+ V +D ++ ++ R+K + +
Sbjct: 64 VACGTGVDSIML--VEEGFSVTSVDASDKMLKYALKER-------WNRRKEPAFDKWVIE 114
Query: 150 DCYEVHLDKVLADDAPFDICSCQFA----MHYSWSTEARARRALANVSALLRPGGTFIGT 205
+ + LDK + FD C + S ++ R AL N+++++RPGG +
Sbjct: 115 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 174
Query: 206 MPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEW 265
+ + I+ G ++Y+ + +
Sbjct: 175 HRNYDYILSTGCAPP----GKNIYYKSDLTKDITTSVLTVNNKAHMVTLD---------- 220
Query: 266 IVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLG 310
+ + A + H + EL++
Sbjct: 221 ---YTVQVPGAGRDGAPGFSKFRLSYYPHC---LASFTELVQEAF 259
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-11
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 25/129 (19%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
LV+ ++ + +LD+ACG G L A V G++++ + R R
Sbjct: 43 LVRRHSPKAASLLDVACGTGMHLRHL--ADSFGTVEGLELSADMLAIARRRNPD------ 94
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA 194
A L GD + L + F +C F ++ + + +A AL +A
Sbjct: 95 --------AVLHHGDMRDFSLGR------RFSAVTCMFSSIGH-LAGQAELDAALERFAA 139
Query: 195 LLRPGGTFI 203
+ P G +
Sbjct: 140 HVLPDGVVV 148
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 22/166 (13%)
Query: 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQR 136
V G + D+ CG G + Y V G+D++E +E + ++
Sbjct: 27 VLEQVEPGKRIADIGCGTGTATLLLAD---HYEVTGVDLSEEMLEIAQ----------EK 73
Query: 137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSAL 195
+ + D E+ L + P D + +++Y TEA ++ + + L
Sbjct: 74 AMETNRHVDFWVQDMRELELPE------PVDAITILCDSLNYLQ-TEADVKQTFDSAARL 126
Query: 196 LRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241
L GG + + + +I + +
Sbjct: 127 LTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPL 172
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 4e-11
Identities = 31/137 (22%), Positives = 44/137 (32%), Gaps = 25/137 (18%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
+ + +L L + G+ +LDL CG G K +G D A IE R Y
Sbjct: 45 YGEDLLQLLNPQPGEFILDLGCGTGQLTEKI-AQSGAEVLGTDNAATMIEKARQNYPH-- 101
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
D D P D +H W E A A+A+
Sbjct: 102 ------------LHFDVADARN------FRVDKPLDAVFSNAMLH--WVKEPEA--AIAS 139
Query: 192 VSALLRPGGTFIGTMPD 208
+ L+ GG F+
Sbjct: 140 IHQALKSGGRFVAEFGG 156
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 6e-11
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 56 EEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW--DKAKIGYYVGI 113
EE E ++ ++L + +VL + A++ V+DL CG G+L+ G+
Sbjct: 5 EETEKKLNLNQQRLG-TVVAVLKSVNAKK---VIDLGCG-EGNLLSLLLKDKSFEQITGV 59
Query: 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF 173
D++ +E + R D +RK+ L L + +D +
Sbjct: 60 DVSYSVLERAKDRLKIDRLPEMQRKR----ISLFQSS-----LVYRDKRFSGYDAATVIE 110
Query: 174 AMHYSWSTEARARRALANVSALLRPGGTFIGT 205
+ + E R + + RP + T
Sbjct: 111 VIEH--LDENRLQAFEKVLFEFTRPQTVIVST 140
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 7e-11
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 21/120 (17%)
Query: 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
VLDL CG G I + +GID++E + + + +
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVC---------- 93
Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
++ + + +++ A+HY A V L+ G+FI
Sbjct: 94 --YEQKAIEDIAI-----EPDAYNVVLSSLALHY----IASFDDICKKVYINLKSSGSFI 142
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 9e-11
Identities = 18/179 (10%), Positives = 46/179 (25%), Gaps = 37/179 (20%)
Query: 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
D+ +K ++ + + + ++ V+LD+
Sbjct: 3 DDVSKAYSS-PTFDAEALLGTVISAED------------PDRVLIEPWATGVDGVILDVG 49
Query: 93 CGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151
G G A +G+ + G++ A +E R + G
Sbjct: 50 SGTGRWTGHL--ASLGHQIEGLEPATRLVELARQTHPS--------------VTFHHGTI 93
Query: 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210
++ + +++ AL + + GG + +
Sbjct: 94 TDLSDS-----PKRWAGLLAWYSLI--HMGPGELPDALVALRMAVEDGGGLLMSFFSGP 145
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 22/130 (16%)
Query: 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH 133
+++L+ + R+ + VLDL CG G L++ + VG+D ++ R G+
Sbjct: 42 QAILLAILGRQPERVLDLGCG-EGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHL 100
Query: 134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
Y + + +D+ FA+ + L+ +
Sbjct: 101 AS----------------YAQLAEAKVPVGKDYDLICANFALLH-----QDIIELLSAMR 139
Query: 194 ALLRPGGTFI 203
LL PGG +
Sbjct: 140 TLLVPGGALV 149
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 2e-10
Identities = 19/136 (13%), Positives = 34/136 (25%), Gaps = 30/136 (22%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQ 135
+ VL+ CG G D ++ + D + ++ R
Sbjct: 41 WLSRLLTPQTRVLEAGCGHGPDAARF--GPQAARWAAYDFSPELLKLARANAPH------ 92
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
A + + L APF + + + + L
Sbjct: 93 --------ADVYEWNGKG-ELP--AGLGAPFGLIVSRRG----------PTSVILRLPEL 131
Query: 196 LRPGGTFIGTMPDANV 211
P F+ P NV
Sbjct: 132 AAPDAHFLYVGPRLNV 147
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 21/171 (12%), Positives = 50/171 (29%), Gaps = 28/171 (16%)
Query: 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
E+ K F +K A + + + I ++ + +D+
Sbjct: 3 SENKKKFDKKGAKNMDEISK-----------TLFAPIYPIIAENIINRFGITAGTCIDIG 51
Query: 93 CGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152
G G I K +D ++ E + +++ GD +
Sbjct: 52 SGPGALSIALAKQSDFSIRALDFSKHMNEIALKN--------IADANLNDRIQIVQGDVH 103
Query: 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
+ + +D D+ + ++ + A + +L+ GG
Sbjct: 104 NIPI-----EDNYADLIVSRGSVFFW----EDVATAFREIYRILKSGGKTY 145
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 3e-10
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 18/153 (11%)
Query: 56 EEREASPIIHLKKL-NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW--DKAKIGYYVG 112
EE I L + N + + L Q ARR V+DL CG G+L+K + G
Sbjct: 3 EEAAVEKPISLNQQRMNGVVAALKQSNARR---VIDLGCG-QGNLLKILLKDSFFEQITG 58
Query: 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQ 172
+D++ S+E + R + + ++ +LI G L +D +
Sbjct: 59 VDVSYRSLEIAQERLDRLRLPRNQWER----LQLIQGA-----LTYQDKRFHGYDAATVI 109
Query: 173 FAMHYSWSTEARARRALANVSALLRPGGTFIGT 205
+ + +R + +P + T
Sbjct: 110 EVIEHL--DLSRLGAFERVLFEFAQPKIVIVTT 140
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 5e-10
Identities = 23/172 (13%), Positives = 43/172 (25%), Gaps = 37/172 (21%)
Query: 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
ES + R A Y ++ + + L VL+LA
Sbjct: 8 IESQLSYYRARASEYDATFVPYMDSAAPAALERL-------------RAGNIRGDVLELA 54
Query: 93 CGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151
G G + + V +D + I + + D
Sbjct: 55 SGTGYWTRHL--SGLADRVTALDGSAEMIA-------------EAGRHGLDNVEFRQQDL 99
Query: 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
++ D +D + + R +V + + PGG
Sbjct: 100 FD------WTPDRQWDAVFFAHWLA--HVPDDRFEAFWESVRSAVAPGGVVE 143
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 6e-10
Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 55/270 (20%)
Query: 42 KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
A+ +++ + + + S II + Y ++ VLD+ CG G K
Sbjct: 22 SSAEFWNQNSQEMWDSGSRSTIIPF-----------FEQYVKKEAEVLDVGCGDGYGTYK 70
Query: 102 WDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160
++ GY G+DI+E I+ + R G I GD +
Sbjct: 71 L--SRTGYKAVGVDISEVMIQKGKERGEGP------------DLSFIKGDLSSLPF---- 112
Query: 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVE 220
++ F+ ++ ++ RAL + +L+ G + +
Sbjct: 113 -ENEQFEAIMAINSLEWT----EEPLRALNEIKRVLKSDGYAC------------IAILG 155
Query: 221 GLAIGNSVYWIRLDEEFADKKFKSSRPFGI---QYKFHLEDAVDCPEWIVPFHIFKSLAE 277
A + RL + F + F + D + + V + L+
Sbjct: 156 PTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLST 215
Query: 278 EYDLELVFVKNSHEFVHEYLKKPEYIELMR 307
+ L F+ +V + E E +
Sbjct: 216 DLQQSLTFL-----WVFMLKRHKEMKEFLG 240
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 1e-09
Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 18/156 (11%)
Query: 53 QTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW---DKAKIGY 109
+ +E P + +++ + + + A ++D CG G L+ +
Sbjct: 694 ERMEAAFFKPPLSKQRVE-YALKHIRESSAST---LVDFGCG-SGSLLDSLLDYPTSLQT 748
Query: 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC 169
+G+DI+ + + + + Y+ + + + DI
Sbjct: 749 IIGVDISPKGLARAAKMLHVKLNKEA--------CNVKSATLYDGSILEFDSRLHDVDIG 800
Query: 170 SCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205
+C + + E +A V +L P + T
Sbjct: 801 TCLEVIEH--MEEDQACEFGEKVLSLFHPKLLIVST 834
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-09
Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 42/163 (25%)
Query: 42 KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
+ YS+ R + +++ L +G V+ D+ G GG +
Sbjct: 7 SIGKQYSQT-------RVPDI--------RIVNAIINLLNLPKGSVIADIGAGTGGYSVA 51
Query: 102 WDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160
A G +V ++ + + G + L
Sbjct: 52 L--ANQGLFVYAVEPSIVMRQQAVVHPQ---------------VEWFTGYAENLAL---- 90
Query: 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
D D A+H+ +S ++ + + + +R G +
Sbjct: 91 -PDKSVDGVISILAIHH-FSHLEKSFQEMQRI---IRDGTIVL 128
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 4e-09
Identities = 29/209 (13%), Positives = 67/209 (32%), Gaps = 26/209 (12%)
Query: 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125
K + K L ++ + V +DL G G ++ K + +Y+GID + ++ D
Sbjct: 7 TKTVDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISK 66
Query: 126 RYNGDADHHQRRKKFSFP-ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR 184
+ ++ K + + + ++ + W T
Sbjct: 67 K------IIKKPSKGGLSNVVFVIAAAESL--------PFELKNIADSISILFPWGTLLE 112
Query: 185 ARR-----ALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIR--LDEEF 237
L+NV+ L + F ++ + + GL + + Y++ E
Sbjct: 113 YVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAEL 172
Query: 238 ADKKFKSSRPFGIQYKFHLEDAVDCPEWI 266
++ F R ++ + W
Sbjct: 173 SNSGF---RIDDVKELDNEYVKQFNSLWA 198
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 5e-09
Identities = 27/181 (14%), Positives = 43/181 (23%), Gaps = 37/181 (20%)
Query: 31 LEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLD 90
+E + T+ F Y E + S + L +L G +L+
Sbjct: 1 MEPDMTQAFDDDTLRFYRGNATAYAERQPRSA---------TLTKFLGEL--PAGAKILE 49
Query: 91 LACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
L CG G G+ V D + + R F
Sbjct: 50 LGCGAGYQAEAM--LAAGFDVDATDGSPELAAEASRRLGRPVRT------MLFHQ----- 96
Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
L +D + L + L+PGG F +
Sbjct: 97 ----------LDAIDAYDAVWAHACLL--HVPRDELADVLKLIWRALKPGGLFYASYKSG 144
Query: 210 N 210
Sbjct: 145 E 145
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 7e-09
Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 8/131 (6%)
Query: 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDAD 132
S L + G VLDL CG G D+ K + G +G+D+ + +E R A+
Sbjct: 74 STLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAE 133
Query: 133 HHQRRKKFSFPARLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
S R + G + + D+ DI + S
Sbjct: 134 KFFGSPSRS-NVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLS----TNKLALFKE 188
Query: 192 VSALLRPGGTF 202
+ +LR GG
Sbjct: 189 IHRVLRDGGEL 199
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-08
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 6/140 (4%)
Query: 65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDC 123
H ++N ++ L G VL CGK D+ + GY+V G +++E ++E
Sbjct: 3 HQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWL--SGQGYHVVGAELSEAAVERY 60
Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
T + + A I C + D + AM
Sbjct: 61 FTERGEQPHITSQGDFKVYAAPGIEIWCGDF-FALTARDIGHCAAFYDRAAMI--ALPAD 117
Query: 184 RARRALANVSALLRPGGTFI 203
R + ++ AL+ + +
Sbjct: 118 MRERYVQHLEALMPQACSGL 137
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 38/166 (22%)
Query: 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGG 97
FA +A+ Y T + + ++ G+ +L++ G G
Sbjct: 2 PFAS-LAEAYEA-WYGTP-----LGAYVI-----AEEERALKGLLPPGESLLEVGAGTGY 49
Query: 98 DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157
L + + VG++ +E + R R A + +
Sbjct: 50 WLRRLPYPQK---VGVEPSEAMLAVGRRRAPE--------------ATWVRAWGEALPF- 91
Query: 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
FD+ + + R L +LRPGG +
Sbjct: 92 ----PGESFDVVLLFTTLEFV----EDVERVLLEARRVLRPGGALV 129
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 25/168 (14%)
Query: 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141
VLD G + + GY GI+I++ ++ ++ +
Sbjct: 22 NLDKTVLDCGAGGDLPPL-SIFVEDGYKTYGIEISDLQLKKAE----------NFSRENN 70
Query: 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201
F + GD ++ D + + + + A+ + +L+PGG
Sbjct: 71 FKLNISKGDIRKLPF-----KDESMSFVYSYGTIFHMRKND--VKEAIDEIKRVLKPGGL 123
Query: 202 FIGTMPDANVIIKKLREVEGLAI------GNSVYWIRLDEEFADKKFK 243
E G G V + E ADK FK
Sbjct: 124 ACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFK 171
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-07
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 17/128 (13%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
+L ++D ACG G ++ V G+D+++ ++E
Sbjct: 49 RFELLFNPELPLIDFACGNGTQTKFL--SQFFPRVIGLDVSKSALEIAAKENTAAN---- 102
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
D + + + H + ++ L
Sbjct: 103 --------ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH--HIPVEKRELLGQSLRIL 152
Query: 196 LRPGGTFI 203
L G
Sbjct: 153 LGKQGAMY 160
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 25/141 (17%), Positives = 35/141 (24%), Gaps = 31/141 (21%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIK----WDKAKIGYYVGIDIAEGSIEDCRTRY 127
+ +L Q+ R DL CG G + I GID + +E R
Sbjct: 21 PARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVI---TGIDSDDDMLEKAADRL 77
Query: 128 NGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARR 187
D D+ W + A
Sbjct: 78 PN--------------TNFGKADLAT------WKPAQKADLLYANAVFQ--WVPDHLA-- 113
Query: 188 ALANVSALLRPGGTFIGTMPD 208
L+ + L GG MPD
Sbjct: 114 VLSQLMDQLESGGVLAVQMPD 134
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 20/143 (13%)
Query: 65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDC 123
+ I ++ G L CG G D++ A +V G+DI+E ++
Sbjct: 48 DQGRATPLIVHLVDTSSLPLGRA-LVPGCGGGHDVVAM--ASPERFVVGLDISESALAKA 104
Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
Y + D + FD+
Sbjct: 105 NETYGSSPKAEY--------FSFVKEDVFT------WRPTELFDLIFDYVFFCAI--EPE 148
Query: 184 RARRALANVSALLRPGGTFIGTM 206
++ LL+P G I M
Sbjct: 149 MRPAWAKSMYELLKPDGELITLM 171
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 26/168 (15%), Positives = 41/168 (24%), Gaps = 35/168 (20%)
Query: 38 VFARKVADHYSR-RTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKG 96
R A Y R R + + V L+L G G
Sbjct: 4 ALLR-AAYAYDRLRAHPPEVAGQI-----------ATAMASAVHPKGEEPVFLELGVGTG 51
Query: 97 GDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155
+ GY +D +E R + G +++ D +
Sbjct: 52 RIALPL--IARGYRYIALDADAAMLEVFRQKIAGVDR----------KVQVVQADARAIP 99
Query: 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
L D H + LA +L+PGG +
Sbjct: 100 L-----PDESVHGVIVVHLWHLV----PDWPKVLAEAIRVLKPGGALL 138
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 3e-07
Identities = 32/259 (12%), Positives = 72/259 (27%), Gaps = 42/259 (16%)
Query: 67 KKLNNWIKSVLVQLYARRGDV-----VLDLACGKGG-------DLIKWDKAKIGYYVGID 114
+ + ++ L + R GD +L + G G + ++
Sbjct: 30 QCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVE 89
Query: 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFA 174
+ I + + F Y+ + + +D
Sbjct: 90 PSAEQIAKYKEL----VAKTSNLENVKFAWHKETSSEYQSRMLEKKELQ-KWDFIHMIQM 144
Query: 175 MHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLD 234
++Y A L +LL + + + KL + G +
Sbjct: 145 LYYVKDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYIT 200
Query: 235 EEFADKKFKSSRPFGIQYKFH-LEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEF- 292
+ + + G++Y+ + L +D + F E DL F+ + F
Sbjct: 201 SDDLTQMLDNL---GLKYECYDLLSTMDISD------CFIDGNENGDLLWDFLTETCNFN 251
Query: 293 ----------VHEYLKKPE 301
+ + L++PE
Sbjct: 252 ATAPPDLRAELGKDLQEPE 270
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 20/134 (14%)
Query: 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH 133
+ + + L + L++ C G + ID+ +I R +
Sbjct: 41 QLLRLSLSSGAVSNGLEIGCA-AGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSH- 98
Query: 134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
D + + FD+ ++Y + R A+ N+
Sbjct: 99 ----------ISWAATDILQ------FSTAELFDLIVVAEVLYY-LEDMTQMRTAIDNMV 141
Query: 194 ALLRPGGT-FIGTM 206
+L PGG G+
Sbjct: 142 KMLAPGGHLVFGSA 155
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 22/167 (13%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
+ ++ R VLD+ G G + +G+D + +E +
Sbjct: 9 SLGLMIKTAECRAEHRVLDIGAG-AGHTALAFSPYVQECIGVDATKEMVEVASSF----- 62
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
+ K R G + D FDI +C++A H+ + R+A+
Sbjct: 63 ---AQEKGVE-NVRFQQGTAESLPF-----PDDSFDIITCRYAAHHF----SDVRKAVRE 109
Query: 192 VSALLRPGGTFI---GTMPDANVIIKKLREVEGLAIGNSVYWIRLDE 235
V+ +L+ G F+ P+ V+ + + + L + V L E
Sbjct: 110 VARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSE 156
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-07
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 22/167 (13%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
+ ++ + + VLD+A G GG + + V D+ E ++ R G+
Sbjct: 25 DLAKLMQIAALKGNEEVLDVATG-GGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG 83
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
+ GD ++ D F I +C+ A H+ ++
Sbjct: 84 HQQ---------VEYVQGDAEQMPF-----TDERFHIVTCRIAAHHF----PNPASFVSE 125
Query: 192 VSALLRPGGTFI---GTMPDANVIIKKLREVEGLAIGNSVYWIRLDE 235
+L+ GG + + P+ + VE + + +
Sbjct: 126 AYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSD 172
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 23/169 (13%), Positives = 41/169 (24%), Gaps = 35/169 (20%)
Query: 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKG 96
F R VL + + G VLD+ G G
Sbjct: 5 HKFDPSKIKKLDD------PSRLELFDPE---------KVLKEFGLKEGMTVLDVGTGAG 49
Query: 97 GDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154
L K + G ID+ E + + + ++ + ++
Sbjct: 50 FYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEK--------VNKLGLK-NVEVLKSEENKI 100
Query: 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
L D D F H + + L + + +P
Sbjct: 101 PL-----PDNTVDFIFMAFTFHEL----SEPLKFLEELKRVAKPFAYLA 140
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR 136
++ Y + D +LD+ CG G + +K GIDI +I T + +
Sbjct: 23 IIHNYLQEDDEILDIGCG-SGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKT 81
Query: 137 RKKFSFPARLICGDCYEVHLDKVLA-DDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
K F + L+ D+ FD Q + + R+ R + V +
Sbjct: 82 GGKAEF----KVENASS------LSFHDSSFDFAVMQAFLTSVPDPKERS-RIIKEVFRV 130
Query: 196 LRPGGTFI 203
L+PG
Sbjct: 131 LKPGAYLY 138
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 5e-07
Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 24/143 (16%)
Query: 70 NNWIKSVLVQLYA--RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRT 125
N+ S LV + ++D CG G + + Y GID E + + R
Sbjct: 6 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE 65
Query: 126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA 185
+ + + + + GD E + + +DI C + +
Sbjct: 66 LF----------RLLPYDSEFLEGDATE------IELNDKYDIAICHAFLLHM----TTP 105
Query: 186 RRALANVSALLRPGGTFIGTMPD 208
L + ++ GG I P
Sbjct: 106 ETMLQKMIHSVKKGGKIICFEPH 128
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-07
Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 10/129 (7%)
Query: 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDA 131
++ + G+ +L++ CG+G G+ GIDIA T G A
Sbjct: 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL--GQA 90
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
+H + L + D FD ++ Y A A
Sbjct: 91 WNHLLAGPLGDRLTVHFNTNLSDDLGPI--ADQHFDRVVLAHSLWYF----ASANALALL 144
Query: 192 VSALLRPGG 200
+
Sbjct: 145 FKNMAAVCD 153
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 5e-07
Identities = 30/207 (14%), Positives = 56/207 (27%), Gaps = 26/207 (12%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHH 134
+ + + +++D+ CG G ++ + +G D++ I+ G D +
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY 88
Query: 135 QRRKKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
+ + D D+ + H+ + +
Sbjct: 89 KN-------VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHW-----FDFEKFQRSAY 136
Query: 194 ALLRPGGTFI------GTMPDANVIIKKLREVEGLAIGNSVYW-----IRLDEEFADKKF 242
A LR GT PD + EV G YW RL D
Sbjct: 137 ANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHL 196
Query: 243 KSSRPFGIQYKFHLEDAVDCPEWIVPF 269
IQ + + V +
Sbjct: 197 DPELFHDIQVSYFCAEDVRDKVKLHQH 223
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 5e-07
Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 37/190 (19%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
I S L + Y + VLDL G G + + + V +D ++ +E R +
Sbjct: 43 LIGSFLEE-YLKNPCRVLDLGGG-TGKWSLFLQERGFEVVLVDPSKEMLEVAREKG---- 96
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICS--CQFAMHYSWSTEARARRAL 189
++ A+D PF + A+ S +A
Sbjct: 97 -----------VKNVVEAK----------AEDLPFPSGAFEAVLALGDVLSYVENKDKAF 135
Query: 190 ANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYW-IRLDEEFADKKFKSSRPF 248
+ + +L P G I T+ + ++++ E + F S
Sbjct: 136 SEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNS---- 191
Query: 249 GIQYKFHLED 258
Y F ED
Sbjct: 192 ---YAFKPED 198
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 25/135 (18%)
Query: 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYN 128
N+++ SV Q+ + +L LA G+G + A +GY V +D + + +
Sbjct: 18 NDFLVSVANQIPQGK---ILCLAEGEGRNACFL--ASLGYEVTAVDQSSVGLAKAK---- 68
Query: 129 GDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRA 188
Q ++ + + L ++ + + ++
Sbjct: 69 ------QLAQEKGVKITTVQSN-----LADFDIVADAWEGI----VSIFCHLPSSLRQQL 113
Query: 189 LANVSALLRPGGTFI 203
V L+PGG FI
Sbjct: 114 YPKVYQGLKPGGVFI 128
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 19/133 (14%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGD 130
K + G VL+ CG G + K IDI+ S+E R
Sbjct: 25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN---- 80
Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190
+ + + + + + +D+ FD F + + AL
Sbjct: 81 ----TEKNGIK-NVKFLQANIFSLPF-----EDSSFDHIFVCFVLEHL----QSPEEALK 126
Query: 191 NVSALLRPGGTFI 203
++ +L+PGGT
Sbjct: 127 SLKKVLKPGGTIT 139
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-06
Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 31/140 (22%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYY--VGIDIAEGSIEDCRTRYNGDADHH 134
L++ R D +L L CG + G+ +D + + + Y
Sbjct: 35 LLEPELRPEDRILVLGCGNSALSY--ELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQL- 91
Query: 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY-----------SWSTEA 183
R D ++ A FD+ + + S
Sbjct: 92 ----------RWETMDVRKLDFP-----SASFDVVLEKGTLDALLAGERDPWTVSSEGVH 136
Query: 184 RARRALANVSALLRPGGTFI 203
+ L+ VS +L PGG FI
Sbjct: 137 TVDQVLSEVSRVLVPGGRFI 156
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 13/141 (9%)
Query: 68 KLNNWIKSV--LVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDC 123
+ N + ++++ + GD V+D CG G D + G G DI + +I +
Sbjct: 4 TIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANT 63
Query: 124 RTRYNGDADHHQRRKKFSFPARLICGD-CYEVHLDKVLADDAPFDICSCQFAMHYSWSTE 182
+ LI F++ H +
Sbjct: 64 TKKL--------TDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRP 115
Query: 183 ARARRALANVSALLRPGGTFI 203
+AL+ LL GG
Sbjct: 116 ETTIQALSKAMELLVTGGIIT 136
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 39/200 (19%)
Query: 65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDC 123
H + L + I + L + + VLD+ CG+G + D G+D+++ +I+
Sbjct: 66 HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 125
Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
RY + + D D +A + E
Sbjct: 126 AKRYPQ--------------VTFCVASSHRLPF-----SDTSMDAIIRIYAPC--KAEEL 164
Query: 184 RARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFK 243
+++PGG I P L E++GL E+ F
Sbjct: 165 A---------RVVKPGGWVITATPGPR----HLMELKGLIYNEVHLHAPHAEQLEG--FT 209
Query: 244 SSRPFGIQYKFHL--EDAVD 261
+ + Y L ++AV
Sbjct: 210 LQQSAELCYPMRLRGDEAVA 229
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-06
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 12/139 (8%)
Query: 66 LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCR 124
+K+ + L + +V+D G G D A + V D+ E ++
Sbjct: 5 IKRPIHMSHDFLAE-VLDDESIVVDATMGNGNDTAFL--AGLSKKVYAFDVQEQALGKTS 61
Query: 125 TRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR 184
R +D + L + + ++ + + A F++ A +
Sbjct: 62 QRL---SDLGIENTEL----ILDGHENLDHYVREPI-RAAIFNLGYLPSADKSVITKPHT 113
Query: 185 ARRALANVSALLRPGGTFI 203
A+ + L GG
Sbjct: 114 TLEAIEKILDRLEVGGRLA 132
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 18/121 (14%)
Query: 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
++ D+ CG GG + G G+D G I+ + + R+
Sbjct: 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFID--------IFNRNARQSGLQN 96
Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
I G ++ + D+ + A++ R L L+ GG
Sbjct: 97 RVTGIVGSMDDLPF-----RNEELDLIWSEGAIYNI-----GFERGLNEWRKYLKKGGYL 146
Query: 203 I 203
Sbjct: 147 A 147
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 35/132 (26%)
Query: 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYN---GDA 131
L ++ + V++D CG G + + IDI ++++ + +++ +
Sbjct: 9 YLPNIFEGKKGVIVDYGCGNGFYCKYL--LEFATKLYCIDINVIALKEVKEKFDSVITLS 66
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
D P D D + H + ++
Sbjct: 67 DPK------EIP-------------------DNSVDFILFANSFHDMDDKQH----VISE 97
Query: 192 VSALLRPGGTFI 203
V +L+ G I
Sbjct: 98 VKRILKDDGRVI 109
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 6e-06
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 32/166 (19%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
++ + +++ G G K K +G++ +E E R R
Sbjct: 35 YLSELQAVKCLLPEGRGVEIGVG-TGRFAVPLKIK----IGVEPSERMAEIARKR----- 84
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
++ G + L D FD + + RAL
Sbjct: 85 -----------GVFVLKGTAENLPLK-----DESFDFALMVTTICFV----DDPERALKE 124
Query: 192 VSALLRPGGTFIGTMPDANVIIKKL--REVEGLAIGNSVYWIRLDE 235
+L+ GG I + D + + + E + + +E
Sbjct: 125 AYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEE 170
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 24/124 (19%)
Query: 83 RRGDVVLDLACGKGG---DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139
+ D+ CG GG L + K +I GID+ IE +
Sbjct: 45 TDDAKIADIGCGTGGQTLFLADYVKGQI---TGIDLFPDFIEIFNEN--------AVKAN 93
Query: 140 FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199
+ + I G + + D+ + A++ R + S L+ G
Sbjct: 94 CADRVKGITGSMDNLPF-----QNEELDLIWSEGAIYN-----IGFERGMNEWSKYLKKG 143
Query: 200 GTFI 203
G
Sbjct: 144 GFIA 147
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 17/133 (12%)
Query: 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD 130
++ L R GD VLD+ CG G ++ A+ GI I+ + R
Sbjct: 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR---- 103
Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190
+ D ++ +DA FD ++H+ RAL
Sbjct: 104 ----ATAAGLANRVTFSYADAMDLPF-----EDASFDAVWALESLHHM----PDRGRALR 150
Query: 191 NVSALLRPGGTFI 203
++ +LRPGGT
Sbjct: 151 EMARVLRPGGTVA 163
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 21/142 (14%)
Query: 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125
K++ + + QL ++ DVVLD+ G G K + V +D + +E
Sbjct: 10 KRVQEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISA 69
Query: 126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA 185
+ A + + A+ P + + W + R
Sbjct: 70 K----AAAKPAKGGLPN-LLYLWAT----------AERLPPLSGVGELHVLMPWGSLLRG 114
Query: 186 RR-----ALANVSALLRPGGTF 202
L ++A+ RPG +F
Sbjct: 115 VLGSSPEMLRGMAAVCRPGASF 136
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 19/132 (14%), Positives = 34/132 (25%), Gaps = 18/132 (13%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
++ + L LD G G ++ + +E+ + G
Sbjct: 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM- 139
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
KF I L +D+ Q+ Y T+A + +
Sbjct: 140 ----PVGKF------ILASMETATLP-----PNTYDLIVIQWTAIYL--TDADFVKFFKH 182
Query: 192 VSALLRPGGTFI 203
L P G
Sbjct: 183 CQQALTPNGYIF 194
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 16/121 (13%)
Query: 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
LD G G + +DI E + +T + +R + +
Sbjct: 78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYL---GEEGKRVRNY-- 132
Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
C + + +D+ Q+ + + T+ L LRP G
Sbjct: 133 ----FCCGLQDFTPE-----PDSYDVIWIQWVIGH--LTDQHLAEFLRRCKGSLRPNGII 181
Query: 203 I 203
+
Sbjct: 182 V 182
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 3e-04
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 25/124 (20%)
Query: 88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
VLD+ CG+G + ++ K + +G+DI E I+ C ++N ++
Sbjct: 45 VLDIGCGRG-EFLELCKEEGIESIGVDINEDMIKFCEGKFN-----------------VV 86
Query: 148 CGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206
D E D D + F H R L+ + ++ +
Sbjct: 87 KSDAIEYLKSL---PDKYLDGVMISHFVEH---LDPERLFELLSLCYSKMKYSSYIVIES 140
Query: 207 PDAN 210
P+
Sbjct: 141 PNPT 144
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 22/118 (18%)
Query: 88 VLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146
LDL CG G + + A GY V D SI + + +
Sbjct: 36 TLDLGCGNGRNSLYL--AANGYDVDAWDKNAMSIANVERI---------KSIENLDNLHT 84
Query: 147 ICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
D L D +D I S M + +AN+ +PGG +
Sbjct: 85 RVVDLNN------LTFDRQYDFILSTVVLMF--LEAKTI-PGLIANMQRCTKPGGYNL 133
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 20/157 (12%), Positives = 48/157 (30%), Gaps = 36/157 (22%)
Query: 61 SPIIHLKKLN--NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118
+ + K + N + L++ + VLD+ C G L K GI+
Sbjct: 7 NSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCS-SGALGAAIKENGTRVSGIEAFPE 65
Query: 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH-- 176
+ E + + + ++ GD + + ++ FD
Sbjct: 66 AAEQAKEKLD----------------HVVLGDIETMDMP---YEEEQFDCVIF---GDVL 103
Query: 177 ---YSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210
+ + V ++ G + ++P+ +
Sbjct: 104 EHLFDP------WAVIEKVKPYIKQNGVILASIPNVS 134
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 25/127 (19%)
Query: 83 RRGDVVLDLACGKGGD---LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139
+R LDL G GG L++ I ++IA + + +
Sbjct: 81 QRQAKGLDLGAGYGGAARFLVRKFGVSI---DCLNIAPVQNKRNE--------EYNNQAG 129
Query: 140 FSFPARLICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSALLRP 198
+ + G E+ +D +D I S +H + + +L+P
Sbjct: 130 LADNITVKYGSFLEIPC-----EDNSYDFIWSQDAFLHS-----PDKLKVFQECARVLKP 179
Query: 199 GGTFIGT 205
G T
Sbjct: 180 RGVMAIT 186
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 8e-04
Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 24/134 (17%)
Query: 73 IKSVLVQLYARRGDVVLDLACGKGG---DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129
K +L + VLD+ G GG + + A GIDI + R
Sbjct: 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHT---HGIDICSNIVNMANER-VS 99
Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL 189
+ D + FD+ + A+ + +
Sbjct: 100 GNNK----------IIFEANDILTKEF-----PENNFDLIYSRDAILA--LSLENKNKLF 142
Query: 190 ANVSALLRPGGTFI 203
L+P GT +
Sbjct: 143 QKCYKWLKPTGTLL 156
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 100.0 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 100.0 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.98 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.85 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.84 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.84 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.83 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.83 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.83 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.82 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.82 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.81 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.81 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.81 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.8 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.8 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.8 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.8 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.8 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.79 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.79 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.79 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.79 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.79 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.78 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.78 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.78 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.78 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.77 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.77 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.77 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.77 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.76 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.76 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.76 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.76 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.76 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.75 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.75 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.75 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.75 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.75 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.74 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.74 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.74 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.74 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.73 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.73 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.72 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.72 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.72 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.71 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.71 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.71 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.71 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.71 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.7 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.7 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.69 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.69 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.69 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.69 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.69 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.68 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.68 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.67 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.67 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.67 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.66 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.65 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.65 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.64 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.64 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.64 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.64 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.64 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.63 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.62 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.61 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.61 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.61 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.61 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.6 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.6 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.6 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.59 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.59 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.59 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.59 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.58 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.58 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.58 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.58 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.57 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.57 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.57 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.57 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.57 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.57 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.56 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.56 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.56 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.56 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.56 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.56 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.55 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.55 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.55 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.54 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.54 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.54 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.54 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.53 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.53 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.53 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.53 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.52 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.52 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.52 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.52 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.52 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.52 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.51 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.51 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.51 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.5 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.5 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.5 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.5 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.49 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.49 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.49 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.48 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.47 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.47 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.47 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.46 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.46 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.46 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.46 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.46 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.46 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.45 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.45 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.45 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.45 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.45 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.45 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.45 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.45 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.44 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.44 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.44 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.44 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.44 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.44 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.44 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.43 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.43 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.43 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.43 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.43 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.42 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.42 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.42 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.42 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.41 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.41 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.41 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.41 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.41 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.41 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.4 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.4 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.4 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.4 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.4 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.39 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.39 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.39 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.39 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.38 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.38 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.38 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.38 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.37 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.37 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.35 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.35 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.34 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.34 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.33 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.33 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.33 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.33 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.33 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.32 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.32 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.32 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.32 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.31 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.31 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.31 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.31 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.3 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.3 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.3 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.29 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.29 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.28 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.28 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.28 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.28 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.28 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.27 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.27 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.27 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.26 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.26 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.26 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.25 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.25 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.25 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.24 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.2 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.19 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.18 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.17 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.17 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.17 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.16 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.16 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.15 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.14 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.13 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.12 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.11 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.11 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.11 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.09 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.06 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.06 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.05 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.05 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.05 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.03 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.02 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.02 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.01 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.91 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.89 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.88 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.88 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.87 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.86 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.84 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.84 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.84 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.81 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.8 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.78 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.75 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.75 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.73 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.72 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.7 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.68 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.62 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.59 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.54 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.54 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.53 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.5 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.49 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.42 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.4 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.29 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.29 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.28 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.26 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.26 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.22 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.2 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.17 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.14 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.99 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.95 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.75 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.72 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.62 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.62 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.47 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.24 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.12 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.94 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.55 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.51 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.48 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.06 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.0 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.97 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 95.9 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.77 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.76 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.36 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.27 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.27 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.07 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.83 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.81 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.79 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.78 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.64 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.53 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.51 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.33 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.31 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.28 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.15 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.03 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.93 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.57 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.29 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.27 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.99 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.88 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.84 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.74 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.7 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.69 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.61 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.43 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.41 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.3 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 92.27 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.25 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.25 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.14 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.0 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.94 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 91.79 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.78 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.66 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 91.21 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 91.21 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.06 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 91.04 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 91.03 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 90.91 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.67 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.46 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.46 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.09 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.04 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.01 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.95 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 89.83 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 89.76 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 89.68 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.66 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 89.42 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 89.4 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.33 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 89.14 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.09 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 88.95 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 88.9 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 88.87 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 88.66 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 88.61 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 88.49 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.04 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 87.97 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 87.94 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 87.84 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 87.08 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 86.64 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 86.44 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 86.26 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 85.26 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 85.22 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 85.19 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 85.08 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 84.89 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 83.9 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 82.92 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 82.71 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 82.07 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 81.64 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 81.48 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 80.76 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 80.04 |
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=271.11 Aligned_cols=274 Identities=38% Similarity=0.693 Sum_probs=211.7
Q ss_pred cCccccchhhhHHHHHHHHHHhC-------CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCc
Q 017369 60 ASPIIHLKKLNNWIKSVLVQLYA-------RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD 132 (372)
Q Consensus 60 ~s~~~~~~~~~~~~k~~l~~~~~-------~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 132 (372)
.|+|++++.+++|++..++.... .++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++......
T Consensus 3 ~s~i~~lr~~~~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 82 (313)
T 3bgv_A 3 QSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKN 82 (313)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHS
T ss_pred cCcchhhhhccHHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhh
Confidence 57788899999999988776432 27789999999999999999876667899999999999999998752100
Q ss_pred ccccccCCCcCeEEEECcCcccccccccC-CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 133 HHQRRKKFSFPARLICGDCYEVHLDKVLA-DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
. .......++.++++|+.++++...+. ++++||+|+|.+++||++.+.++...+|+++.++|||||.+++++++...
T Consensus 83 ~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~ 160 (313)
T 3bgv_A 83 R--RDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFE 160 (313)
T ss_dssp S--SCC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH
T ss_pred c--ccccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHH
Confidence 0 00001236899999998876221111 23589999999999998778888999999999999999999999999988
Q ss_pred HHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhH
Q 017369 212 IIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHE 291 (372)
Q Consensus 212 ~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~ 291 (372)
+...+.......+++.+|.+.|.... ..+.++..|.|.+...+++++|+++++.+.++++++||+++...+|.+
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~f~~~~------~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~~ 234 (313)
T 3bgv_A 161 LIRRLEASETESFGNEIYTVKFQKKG------DYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLE 234 (313)
T ss_dssp HHHHHTTSSSSEEECSSEEEEESCSS------CCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHHH
T ss_pred HHHHHHhhccCccCCeeEEEEeCCCC------CCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHHH
Confidence 88887777666788888998886532 134588999999988889999999999999999999999999999999
Q ss_pred HHHHHhCChhhHHHHHHhccCC----------CC------------------CCCCCCCCHhHHHHHHhhcEEEEEec
Q 017369 292 FVHEYLKKPEYIELMRRLGALG----------DG------------------NQDQSTLSADEWEVAYLYLAFVLRKR 341 (372)
Q Consensus 292 ~~~~~~~~~~~~~l~~~~~~~~----------~~------------------~~~~~~ls~~e~e~~~ly~~~vf~K~ 341 (372)
+............+..+|..+. ++ ....+.||++|||++++|.+|+|+|.
T Consensus 235 ~g~~~~~~~r~~~l~~~~~~~~~y~~~~~~~~~~~~~~ty~~~~~~~~~~~~~~~~~~~~~~e~e~~~~y~~~~f~k~ 312 (313)
T 3bgv_A 235 FYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQ 312 (313)
T ss_dssp HHHHHTTSHHHHHHHHHHC----------------------------------CCSSSSCHHHHHHHTTEEEEEEEEC
T ss_pred HHHHhccchhhhHHHHhhhcccccCccccccccccchhhhHHHHHHHhhccccCcCCCCCHHHHHHHHhheEEEEEeC
Confidence 9887766555555555554431 00 00236799999999999999999996
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=258.25 Aligned_cols=274 Identities=36% Similarity=0.577 Sum_probs=210.3
Q ss_pred HHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChH
Q 017369 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118 (372)
Q Consensus 39 ~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~ 118 (372)
..+.++++|+.........+..+...+++.+++|++..+....+.++.+|||+|||+|.++..++..+...|+|+|+|+.
T Consensus 19 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 98 (298)
T 1ri5_A 19 KKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEV 98 (298)
T ss_dssp ----------------------CCSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHH
T ss_pred hHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHH
Confidence 34456667766555544555556666788899999999888888899999999999999999988776668999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC
Q 017369 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP 198 (372)
Q Consensus 119 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp 198 (372)
+++.|+++... .+...++.++++|+.+.++. ++++||+|++.+++||++.+..+...+|+++.++|||
T Consensus 99 ~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp 166 (298)
T 1ri5_A 99 SINDARVRARN--------MKRRFKVFFRAQDSYGRHMD----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP 166 (298)
T ss_dssp HHHHHHHHHHT--------SCCSSEEEEEESCTTTSCCC----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHh--------cCCCccEEEEECCccccccC----CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCC
Confidence 99999999864 22334689999999887652 3578999999999998766788999999999999999
Q ss_pred CcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccc-cCceeeeehHHHHHHHH
Q 017369 199 GGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV-DCPEWIVPFHIFKSLAE 277 (372)
Q Consensus 199 gG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~-~~~e~l~~~~~l~~l~~ 277 (372)
||++++++|+...+...+.. ..+++.+|++.++... .+| ..+|..|.|.+.+.+ ..+.++++.++++++++
T Consensus 167 gG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~--~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~ 238 (298)
T 1ri5_A 167 GGYFIMTVPSRDVILERYKQ---GRMSNDFYKIELEKME---DVP--MESVREYRFTLLDSVNNCIEYFVDFTRMVDGFK 238 (298)
T ss_dssp EEEEEEEEECHHHHHHHHHH---TCCBCSSEEEECCCCS---SCC--TTTCCEEEEEETTSCSSEEEECCCHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHcc---CccCCeeEEEEeCccc---ccc--ccccceEEEEEchhhcCCcccccCHHHHHHHHH
Confidence 99999999999887776653 3567778888776531 111 227888999887766 46678999999999999
Q ss_pred HcCcEEEEecChhHHHHHHhCChhhHHHHHHhccCCCCCCCCCCCCHhHHHHHHhhcEEEEEecC
Q 017369 278 EYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRG 342 (372)
Q Consensus 278 ~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ls~~e~e~~~ly~~~vf~K~~ 342 (372)
++||+++....+..++..+.. .+.+++++|+. +.++..+|++.++|++|||+|.+
T Consensus 239 ~aGf~~v~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~s~~~~~~~~~y~~~~~~k~~ 293 (298)
T 1ri5_A 239 RLGLSLVERKGFIDFYEDEGR--RNPELSKKMGL--------GCLTREESEVVGIYEVVVFRKLV 293 (298)
T ss_dssp TTTEEEEEEEEHHHHHHHHHH--TCHHHHHSSSC--------CCCCHHHHHHHTTEEEEEEEEC-
T ss_pred HcCCEEEEecCHHHHHHHHHH--HhhhHHHhcCc--------CccCHHHHHHHhceEEEEEEEcC
Confidence 999999999999999988764 57888888762 56999999999999999999986
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.5e-32 Score=250.27 Aligned_cols=248 Identities=21% Similarity=0.260 Sum_probs=170.9
Q ss_pred chhhhHHHHHHHHHHhCC-------CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccccccc
Q 017369 66 LKKLNNWIKSVLVQLYAR-------RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK 138 (372)
Q Consensus 66 ~~~~~~~~k~~l~~~~~~-------~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~ 138 (372)
++.+++|+++.++..+.. ++.+|||||||+|.++..++..+..+|+|+|+|+.||+.|++++...+... .
T Consensus 23 ~~~~nn~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~---~ 99 (302)
T 2vdw_A 23 LGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGI---K 99 (302)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccc---c
Confidence 577899999998876554 378999999999998888877766789999999999999999876311000 0
Q ss_pred CCCcCeEEEECcCccccc----ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 139 KFSFPARLICGDCYEVHL----DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 139 ~~~~~~~~~~~D~~~~~~----~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
.-..++.|.+.|+....+ .... ++++||+|+|.+++||++++. +...+|++++++|||||+|++++|+...+..
T Consensus 100 ~~~~~~~f~~~d~~~d~~~~~l~~~~-~~~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~ 177 (302)
T 2vdw_A 100 TKYYKFDYIQETIRSDTFVSSVREVF-YFGKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTMDGDKLSK 177 (302)
T ss_dssp -CCCEEEEEECCTTSSSHHHHHHTTC-CSSCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEECHHHHTT
T ss_pred ccccccchhhhhcccchhhhhhhccc-cCCCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence 001136788888732211 1111 457999999999999987764 4679999999999999999999999877654
Q ss_pred HHhhhcCCccCC-----eEEEEEeCchhhhcccCCCCCceeeE-EEE-ecc-cccCceeeeehHHHHHHHHHcCcEEEEe
Q 017369 215 KLREVEGLAIGN-----SVYWIRLDEEFADKKFKSSRPFGIQY-KFH-LED-AVDCPEWIVPFHIFKSLAEEYDLELVFV 286 (372)
Q Consensus 215 ~l~~~~~~~~~~-----~~~~i~f~~~~~~~~f~~~~~~g~~y-~~~-l~~-~~~~~e~l~~~~~l~~l~~~~Gf~~v~~ 286 (372)
.+....-...++ .+..+.. ++..+ ..+ ... ..++++|++++++++++++++||++++.
T Consensus 178 ~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~ 243 (302)
T 2vdw_A 178 LTDKKTFIIHKNLPSSENYMSVEK--------------IADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDN 243 (302)
T ss_dssp CCSCEEEECCSSSCTTTSEEEECE--------------EETTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEE
T ss_pred HHhcCCcccccccccccceeeecc--------------ccccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEe
Confidence 322110000111 0111100 00000 001 111 3357789999999999999999999999
Q ss_pred cChhHHHHHHhC-------------ChhhHHHHHHhccCCCCCCCCCCCCHhHHHHHHhhcEEEEEec
Q 017369 287 KNSHEFVHEYLK-------------KPEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKR 341 (372)
Q Consensus 287 ~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~ls~~e~e~~~ly~~~vf~K~ 341 (372)
.+|.+++.++.. .+.+ .++.+++. +.++++|||++++|++|||+|.
T Consensus 244 ~~f~~~~~~~~~~~~~~~~le~~~~~~~~-~~l~~~~~--------~~~~~~~~e~~~lY~~f~F~K~ 302 (302)
T 2vdw_A 244 VDFATIIERSKKFINGASTMEDRPSTRNF-FELNRGAI--------KCEGLDVEDLLSYYVVYVFSKR 302 (302)
T ss_dssp EEHHHHHHHHHHHHHTGGGGCCCHHHHHH-HHHHHHHH--------HCCSCSHHHHHTTEEEEEEEEC
T ss_pred cChHHHHHHHHHHHHHhhhhhccCccccc-cccccccc--------ccCCHhHHHHHhheEEEEEEEC
Confidence 999999877632 0112 22333332 2489999999999999999995
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=174.58 Aligned_cols=113 Identities=21% Similarity=0.402 Sum_probs=96.0
Q ss_pred HHHHhCCCCCEEEEecCCccccHHHHHHc---CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 77 LVQLYARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 77 l~~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
+...+++++.+|||+|||+|..+..+++. ...+|+|+|+|+.||+.|++++.. .+...+++++++|+.+
T Consensus 63 l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~--------~~~~~~v~~~~~D~~~ 134 (261)
T 4gek_A 63 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA--------YKAPTPVDVIEGDIRD 134 (261)
T ss_dssp HHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT--------SCCSSCEEEEESCTTT
T ss_pred HHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh--------hccCceEEEeeccccc
Confidence 34456789999999999999999988774 234899999999999999999874 3345679999999988
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++ +.||+|++.+++||+ +..+...+|++++++|||||.|+++.
T Consensus 135 ~~~-------~~~d~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 135 IAI-------ENASMVVLNFTLQFL--EPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp CCC-------CSEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-------cccccceeeeeeeec--CchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 765 569999999999987 56777889999999999999998864
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-21 Score=176.62 Aligned_cols=206 Identities=17% Similarity=0.154 Sum_probs=135.7
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCC
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA 116 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s 116 (372)
...|+.++..|+.........+.. .......+..++..+. .++.+|||+|||+|.++..++.. ..+|+|+|+|
T Consensus 27 ~~~fd~~a~~y~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s 99 (285)
T 4htf_A 27 DRNFDDIAEKFSRNIYGTTKGQLR-----QAILWQDLDRVLAEMG-PQKLRVLDAGGGEGQTAIKMAER-GHQVILCDLS 99 (285)
T ss_dssp -----CHHHHHHSCTTSCHHHHHH-----HHHHHHHHHHHHHHTC-SSCCEEEEETCTTCHHHHHHHHT-TCEEEEEESC
T ss_pred ccchhhHHHHHHHHhccCCcchHH-----HHHHHHHHHHHHHhcC-CCCCEEEEeCCcchHHHHHHHHC-CCEEEEEECC
Confidence 457888999998543332221111 1112222334444433 34689999999999999988877 4489999999
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHh
Q 017369 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195 (372)
Q Consensus 117 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~ 195 (372)
+.+++.|++++.. .++..++.++++|+.+++ + .+++||+|++..+++|+ .++..+++++.++
T Consensus 100 ~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~ 162 (285)
T 4htf_A 100 AQMIDRAKQAAEA--------KGVSDNMQFIHCAAQDVASH-----LETPVDLILFHAVLEWV----ADPRSVLQTLWSV 162 (285)
T ss_dssp HHHHHHHHHHHHC---------CCGGGEEEEESCGGGTGGG-----CSSCEEEEEEESCGGGC----SCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--------cCCCcceEEEEcCHHHhhhh-----cCCCceEEEECchhhcc----cCHHHHHHHHHHH
Confidence 9999999999864 333467999999998876 4 56899999999999998 4567899999999
Q ss_pred cCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHH
Q 017369 196 LRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSL 275 (372)
Q Consensus 196 LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l 275 (372)
|||||++++.+++.............+. ......+. ..+ ....+.+.++.+.+.++
T Consensus 163 LkpgG~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~--~~~---------~~~~~~~~~~~~~l~~~ 218 (285)
T 4htf_A 163 LRPGGVLSLMFYNAHGLLMHNMVAGNFD-------------YVQAGMPK--KKK---------RTLSPDYPRDPTQVYLW 218 (285)
T ss_dssp EEEEEEEEEEEEBHHHHHHHHHHTTCHH-------------HHHTTCCC--C-------------CCCSCCBCHHHHHHH
T ss_pred cCCCeEEEEEEeCCchHHHHHHHhcCHH-------------HHhhhccc--ccc---------ccCCCCCCCCHHHHHHH
Confidence 9999999999988765433211100000 00000000 000 00011246788999999
Q ss_pred HHHcCcEEEEecChh
Q 017369 276 AEEYDLELVFVKNSH 290 (372)
Q Consensus 276 ~~~~Gf~~v~~~~~~ 290 (372)
++++||+++....+.
T Consensus 219 l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 219 LEEAGWQIMGKTGVR 233 (285)
T ss_dssp HHHTTCEEEEEEEES
T ss_pred HHHCCCceeeeeeEE
Confidence 999999999876654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=165.13 Aligned_cols=219 Identities=17% Similarity=0.258 Sum_probs=135.8
Q ss_pred hhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEe
Q 017369 35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID 114 (372)
Q Consensus 35 ~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD 114 (372)
...++|+..+..|+........... ...+..++. ..+.++.+|||+|||+|.++..++..+ .+|+|+|
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~-----~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD 82 (242)
T 3l8d_A 15 SAEKKWDSSAEFWNQNSQEMWDSGS------RSTIIPFFE-----QYVKKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVD 82 (242)
T ss_dssp -----------------CHHHHTST------TTTHHHHHH-----HHSCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEE
T ss_pred HHHHHHHhHHHHhhhhhhhccCccc------HHHHHHHHH-----HHcCCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEE
Confidence 3456888888888754433222111 111222221 224678899999999999999988764 4899999
Q ss_pred CChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 115 ~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
+|+.+++.|+++.. ..++.++++|+.++++ ++++||+|++..+++|+ .+...+++++.+
T Consensus 83 ~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~ 141 (242)
T 3l8d_A 83 ISEVMIQKGKERGE------------GPDLSFIKGDLSSLPF-----ENEQFEAIMAINSLEWT----EEPLRALNEIKR 141 (242)
T ss_dssp SCHHHHHHHHTTTC------------BTTEEEEECBTTBCSS-----CTTCEEEEEEESCTTSS----SCHHHHHHHHHH
T ss_pred CCHHHHHHHHhhcc------------cCCceEEEcchhcCCC-----CCCCccEEEEcChHhhc----cCHHHHHHHHHH
Confidence 99999999988753 3469999999998876 67899999999999997 457799999999
Q ss_pred hcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHH
Q 017369 195 LLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKS 274 (372)
Q Consensus 195 ~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~ 274 (372)
+|+|||++++++++....... ... ... ++. ......++...+.+
T Consensus 142 ~L~pgG~l~i~~~~~~~~~~~-------------------~~~-~~~------~~~----------~~~~~~~~~~~~~~ 185 (242)
T 3l8d_A 142 VLKSDGYACIAILGPTAKPRE-------------------NSY-PRL------YGK----------DVVCNTMMPWEFEQ 185 (242)
T ss_dssp HEEEEEEEEEEEECTTCGGGG-------------------GGG-GGG------GTC----------CCSSCCCCHHHHHH
T ss_pred HhCCCeEEEEEEcCCcchhhh-------------------hhh-hhh------ccc----------cccccCCCHHHHHH
Confidence 999999999988654311000 000 000 000 00113567788999
Q ss_pred HHHHcCcEEEEecChhHHHHHHhCChhhHHHHHHhccCCCCCCCCCCCCHhHHHHHHhhcEEEEEecC
Q 017369 275 LAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKRG 342 (372)
Q Consensus 275 l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ls~~e~e~~~ly~~~vf~K~~ 342 (372)
+++++||+++....+.. ......+. ..+..........+..|+++|.+
T Consensus 186 ~l~~~Gf~~~~~~~~~~-------~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~ 233 (242)
T 3l8d_A 186 LVKEQGFKVVDGIGVYK-------RGVNEKML-------------GQLSTDLQQSLTFLWVFMLKRHK 233 (242)
T ss_dssp HHHHTTEEEEEEEEEEC-------TTCCHHHH-------------TTSCHHHHHHTEEEEEEEEEECC
T ss_pred HHHHcCCEEEEeecccc-------cCccHHHH-------------HHHHHhHHHHHhHhhhhhhHHHH
Confidence 99999999998764311 11111111 12444545566778888888876
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-19 Score=161.84 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=117.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++... .++..++.++++|+.++++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~----- 110 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQ--------SGLQNRVTGIVGSMDDLPF----- 110 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEECCTTSCCC-----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHH--------cCCCcCcEEEEcChhhCCC-----
Confidence 567899999999999999999887666999999999999999998764 3445679999999988876
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh------HHHHHHHhhhcCCccCCeEEEEEeCc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA------NVIIKKLREVEGLAIGNSVYWIRLDE 235 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~------~~~~~~l~~~~~~~~~~~~~~i~f~~ 235 (372)
++++||+|++..+++|+ ++..+++++.++|||||++++..+.. ..+...
T Consensus 111 ~~~~fD~i~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-------------------- 165 (267)
T 3kkz_A 111 RNEELDLIWSEGAIYNI-----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDF-------------------- 165 (267)
T ss_dssp CTTCEEEEEESSCGGGT-----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHH--------------------
T ss_pred CCCCEEEEEEcCCceec-----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHH--------------------
Confidence 67899999999999986 35789999999999999999876431 000000
Q ss_pred hhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 236 EFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 236 ~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
|... .+ .+.+.+.+.++++++||+++....++
T Consensus 166 ------------~~~~----------~~-~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 166 ------------WMDA----------YP-EIDTIPNQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp ------------HHHH----------CT-TCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred ------------HHHh----------CC-CCCCHHHHHHHHHHCCCEEEEEEECC
Confidence 0000 01 26688899999999999999876654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=164.73 Aligned_cols=169 Identities=18% Similarity=0.131 Sum_probs=125.0
Q ss_pred HHHHHHHHH----hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEE
Q 017369 72 WIKSVLVQL----YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147 (372)
Q Consensus 72 ~~k~~l~~~----~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 147 (372)
.+..++..+ ...++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++... .++..++.++
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~ 137 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQ--------AGLADNITVK 137 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH--------HTCTTTEEEE
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHh--------cCCCcceEEE
Confidence 344455555 5678899999999999999998876344899999999999999998753 3345579999
Q ss_pred ECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCe
Q 017369 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNS 227 (372)
Q Consensus 148 ~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~ 227 (372)
++|+.++++ ++++||+|++..+++|+ .++..+|+++.++|||||+++++.+......
T Consensus 138 ~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-------------- 194 (297)
T 2o57_A 138 YGSFLEIPC-----EDNSYDFIWSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDPMKEDGI-------------- 194 (297)
T ss_dssp ECCTTSCSS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEEECTTC--------------
T ss_pred EcCcccCCC-----CCCCEeEEEecchhhhc----CCHHHHHHHHHHHcCCCeEEEEEEeccCCCC--------------
Confidence 999998887 67899999999999998 3478999999999999999998875431100
Q ss_pred EEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHH
Q 017369 228 VYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFV 293 (372)
Q Consensus 228 ~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~ 293 (372)
....... + ......+ .+.+...+.++++++||+++....+.+.+
T Consensus 195 ------~~~~~~~-------~--------~~~~~~~-~~~~~~~~~~~l~~aGf~~~~~~~~~~~~ 238 (297)
T 2o57_A 195 ------DKSSIQP-------I--------LDRIKLH-DMGSLGLYRSLAKECGLVTLRTFSRPDSL 238 (297)
T ss_dssp ------CGGGGHH-------H--------HHHHTCS-SCCCHHHHHHHHHHTTEEEEEEEECHHHH
T ss_pred ------chHHHHH-------H--------HHHhcCC-CCCCHHHHHHHHHHCCCeEEEEEECchhh
Confidence 0000000 0 0000011 24577889999999999999988776543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.4e-21 Score=165.67 Aligned_cols=180 Identities=9% Similarity=0.025 Sum_probs=130.6
Q ss_pred hhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEe
Q 017369 35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID 114 (372)
Q Consensus 35 ~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD 114 (372)
...++|+.++..|+........ .......++..++. ..+.+|||+|||+|.++..++..+. +|+|+|
T Consensus 4 ~~~~~y~~~a~~y~~~~~~~~~--------~~~~~~~~l~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD 70 (203)
T 3h2b_A 4 DVSKAYSSPTFDAEALLGTVIS--------AEDPDRVLIEPWAT----GVDGVILDVGSGTGRWTGHLASLGH-QIEGLE 70 (203)
T ss_dssp HHHHHHHCTTTCHHHHTCSSCC--------TTCTTHHHHHHHHH----HCCSCEEEETCTTCHHHHHHHHTTC-CEEEEC
T ss_pred HHHHHHhhHHHHHHHHhhhhcc--------ccHHHHHHHHHHhc----cCCCeEEEecCCCCHHHHHHHhcCC-eEEEEe
Confidence 4556777777777644322111 00112233333332 2378999999999999998887644 899999
Q ss_pred CChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 115 ~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
+|+.|++.|+++.. ++.++++|+.++++ ++++||+|++..+++|+ +.++...+++++.+
T Consensus 71 ~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~ 129 (203)
T 3h2b_A 71 PATRLVELARQTHP--------------SVTFHHGTITDLSD-----SPKRWAGLLAWYSLIHM--GPGELPDALVALRM 129 (203)
T ss_dssp CCHHHHHHHHHHCT--------------TSEEECCCGGGGGG-----SCCCEEEEEEESSSTTC--CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCC--------------CCeEEeCccccccc-----CCCCeEEEEehhhHhcC--CHHHHHHHHHHHHH
Confidence 99999999998754 58899999998876 67899999999999997 33578899999999
Q ss_pred hcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHH
Q 017369 195 LLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKS 274 (372)
Q Consensus 195 ~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~ 274 (372)
+|||||.+++++++... .. .+.. . ....+.++.+.+.+
T Consensus 130 ~L~pgG~l~i~~~~~~~----------------~~--~~~~-----------------------~-~~~~~~~~~~~~~~ 167 (203)
T 3h2b_A 130 AVEDGGGLLMSFFSGPS----------------LE--PMYH-----------------------P-VATAYRWPLPELAQ 167 (203)
T ss_dssp TEEEEEEEEEEEECCSS----------------CE--EECC-----------------------S-SSCEEECCHHHHHH
T ss_pred HcCCCcEEEEEEccCCc----------------hh--hhhc-----------------------h-hhhhccCCHHHHHH
Confidence 99999999998765531 00 0000 0 01124678899999
Q ss_pred HHHHcCcEEEEecChh
Q 017369 275 LAEEYDLELVFVKNSH 290 (372)
Q Consensus 275 l~~~~Gf~~v~~~~~~ 290 (372)
+++++||+++....+.
T Consensus 168 ~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 168 ALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHTTEEEEEEEECT
T ss_pred HHHHCCCcEEEEEecC
Confidence 9999999999886443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=160.40 Aligned_cols=142 Identities=15% Similarity=0.250 Sum_probs=108.4
Q ss_pred hhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHh-CCCCCEEEEecCCccccHHHHHHcC-CCEEEEE
Q 017369 36 TKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGI 113 (372)
Q Consensus 36 ~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~-~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gv 113 (372)
+.++|+.++..|+....... ..+..+...++..+. ..++.+|||+|||+|..+..++... ..+|+|+
T Consensus 6 ~~~~f~~~a~~y~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v 74 (234)
T 3dtn_A 6 IKRKFDAVSGKYDEQRRKFI-----------PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLV 74 (234)
T ss_dssp SCCCCCHHHHHHHHHHHHHC-----------TTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhHHHhC-----------cCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEE
Confidence 34477788888875432211 112233333333332 4578999999999999999988764 5589999
Q ss_pred eCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHH
Q 017369 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193 (372)
Q Consensus 114 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~ 193 (372)
|+|+.+++.|+++... ..++.++++|+.++++ + ++||+|++..+++|+ +......+++++.
T Consensus 75 D~s~~~~~~a~~~~~~-----------~~~~~~~~~d~~~~~~-----~-~~fD~v~~~~~l~~~--~~~~~~~~l~~~~ 135 (234)
T 3dtn_A 75 DMSEKMLEIAKNRFRG-----------NLKVKYIEADYSKYDF-----E-EKYDMVVSALSIHHL--EDEDKKELYKRSY 135 (234)
T ss_dssp ESCHHHHHHHHHHTCS-----------CTTEEEEESCTTTCCC-----C-SCEEEEEEESCGGGS--CHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhhcc-----------CCCEEEEeCchhccCC-----C-CCceEEEEeCccccC--CHHHHHHHHHHHH
Confidence 9999999999999863 1279999999998775 4 899999999999998 5556668999999
Q ss_pred HhcCCCcEEEEEeC
Q 017369 194 ALLRPGGTFIGTMP 207 (372)
Q Consensus 194 ~~LkpgG~li~~~~ 207 (372)
++|||||.+++..+
T Consensus 136 ~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 136 SILKESGIFINADL 149 (234)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HhcCCCcEEEEEEe
Confidence 99999999998764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=156.61 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=95.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++... .++..++.++++|+.++++
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~---- 110 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVK--------ANCADRVKGITGSMDNLPF---- 110 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEECCTTSCSS----
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHH--------cCCCCceEEEECChhhCCC----
Confidence 3567889999999999999999887666999999999999999998864 3445569999999988876
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++++||+|++..+++|+ +...+++++.++|||||+++++.++
T Consensus 111 -~~~~fD~v~~~~~l~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 111 -QNEELDLIWSEGAIYNI-----GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp -CTTCEEEEEEESCSCCC-----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred -CCCCEEEEEecChHhhc-----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 67899999999999986 3678999999999999999988743
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=162.29 Aligned_cols=173 Identities=17% Similarity=0.249 Sum_probs=121.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++.. ..++.++++|+.++++
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~----- 104 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT------------SPVVCYEQKAIEDIAI----- 104 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC------------CTTEEEEECCGGGCCC-----
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc------------cCCeEEEEcchhhCCC-----
Confidence 34789999999999999999988766699999999999999999875 3469999999988776
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
++++||+|++..+++|+ .++..+++++.++|||||.++++++++.........-.....+...... +.. +
T Consensus 105 ~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~---- 174 (253)
T 3g5l_A 105 EPDAYNVVLSSLALHYI----ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWP-VDR-Y---- 174 (253)
T ss_dssp CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEE-ECC-T----
T ss_pred CCCCeEEEEEchhhhhh----hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEE-ecc-c----
Confidence 67899999999999998 5678999999999999999999998874322110000000001111110 000 0
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
+. .+..-...+. .....|..+.+++.++++++||+++...
T Consensus 175 ~~----~~~~~~~~~~--~~~~~~~~t~~~~~~~l~~aGF~~~~~~ 214 (253)
T 3g5l_A 175 FN----ESMRTSHFLG--EDVQKYHRTVTTYIQTLLKNGFQINSVI 214 (253)
T ss_dssp TC----CCEEEEEETT--EEEEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred cc----cceEEEeecc--ccCccEecCHHHHHHHHHHcCCeeeeee
Confidence 00 0000000111 1123355689999999999999999876
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-19 Score=159.29 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 70 ~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
..|+..++..+...++.+|||+|||+|.++..++......|+|+|+|+.+++.|+++... ..++.++++
T Consensus 79 ~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~~~ 147 (254)
T 1xtp_A 79 IEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-----------MPVGKFILA 147 (254)
T ss_dssp HHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-----------SSEEEEEES
T ss_pred HHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc-----------CCceEEEEc
Confidence 355666666666667899999999999999888776666899999999999999998763 146899999
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEE
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVY 229 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~ 229 (372)
|+.++++ ++++||+|++..+++|+ +..+...+++++.++|||||+++++.+.... .. +
T Consensus 148 d~~~~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--------------~~-~ 205 (254)
T 1xtp_A 148 SMETATL-----PPNTYDLIVIQWTAIYL--TDADFVKFFKHCQQALTPNGYIFFKENCSTG--------------DR-F 205 (254)
T ss_dssp CGGGCCC-----CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEBC----------------CC-E
T ss_pred cHHHCCC-----CCCCeEEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEecCCCc--------------cc-c
Confidence 9988776 56899999999999997 5567899999999999999999988753210 00 0
Q ss_pred EEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 230 WIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 230 ~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
... . ....+..+.+.+.++++++||+++...
T Consensus 206 ~~~--------------------------~-~~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 206 LVD--------------------------K-EDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp EEE--------------------------T-TTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred eec--------------------------c-cCCcccCCHHHHHHHHHHCCCEEEEee
Confidence 000 0 001135678899999999999999875
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=157.23 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=95.6
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCC
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA 116 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s 116 (372)
.++|+.++..|+......... .+........++..+...++.+|||+|||+|.++..++.. ..+|+|+|+|
T Consensus 6 ~~~f~~~a~~y~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s 76 (220)
T 3hnr_A 6 NGLFDEWAHTYDSFVQGEDIQ--------YKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPS 76 (220)
T ss_dssp ------------------CCT--------TTTTTTTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSC
T ss_pred HHHHHHHHHHHHHHhhcchHh--------HHHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCC
Confidence 357888999998644211110 1111122233444455568899999999999999998876 4489999999
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhc
Q 017369 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL 196 (372)
Q Consensus 117 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L 196 (372)
+.+++.|+++.. .++.++++|+.++++ + ++||+|++..+++|+ .......+|+++.++|
T Consensus 77 ~~~~~~a~~~~~-------------~~~~~~~~d~~~~~~-----~-~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~L 135 (220)
T 3hnr_A 77 REMRMIAKEKLP-------------KEFSITEGDFLSFEV-----P-TSIDTIVSTYAFHHL--TDDEKNVAIAKYSQLL 135 (220)
T ss_dssp HHHHHHHHHHSC-------------TTCCEESCCSSSCCC-----C-SCCSEEEEESCGGGS--CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC-------------CceEEEeCChhhcCC-----C-CCeEEEEECcchhcC--ChHHHHHHHHHHHHhc
Confidence 999999998864 258899999998776 4 899999999999998 4444455999999999
Q ss_pred CCCcEEEEEeCC
Q 017369 197 RPGGTFIGTMPD 208 (372)
Q Consensus 197 kpgG~li~~~~~ 208 (372)
||||.++++.+.
T Consensus 136 kpgG~l~i~~~~ 147 (220)
T 3hnr_A 136 NKGGKIVFADTI 147 (220)
T ss_dssp CTTCEEEEEEEC
T ss_pred CCCCEEEEEecc
Confidence 999999998654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=158.21 Aligned_cols=128 Identities=18% Similarity=0.173 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccc---cCCCcCeEE
Q 017369 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR---KKFSFPARL 146 (372)
Q Consensus 70 ~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~---~~~~~~~~~ 146 (372)
+..+...+..+.+.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++........... .....++.+
T Consensus 8 ~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 8 NKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI 86 (203)
T ss_dssp THHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred CHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEE
Confidence 44455556666667889999999999999999887654 89999999999999998864200000000 000246899
Q ss_pred EECcCcccccccccCCC-CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 147 ICGDCYEVHLDKVLADD-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+++|+.++++ .+ ++||+|++..+++|+ +.++...++++++++|||||++++.
T Consensus 87 ~~~d~~~l~~-----~~~~~fD~v~~~~~l~~l--~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 87 WCGDFFALTA-----RDIGHCAAFYDRAAMIAL--PADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEECCSSSTH-----HHHHSEEEEEEESCGGGS--CHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EECccccCCc-----ccCCCEEEEEECcchhhC--CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999998876 33 689999999999987 5567788999999999999984443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-19 Score=160.25 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.....++..+.+.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++... .++..++.++++|
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d 119 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATA--------AGLANRVTFSYAD 119 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEECC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHh--------cCCCcceEEEECc
Confidence 34445555556678899999999999999988875556899999999999999998763 3345579999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH----HHHHHHhhhcCCccCC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN----VIIKKLREVEGLAIGN 226 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~----~~~~~l~~~~~~~~~~ 226 (372)
+.++++ ++++||+|++..+++|+ .+...+|+++.++|||||+++++.+... .........
T Consensus 120 ~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~------- 183 (273)
T 3bus_A 120 AMDLPF-----EDASFDAVWALESLHHM----PDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDA------- 183 (273)
T ss_dssp TTSCCS-----CTTCEEEEEEESCTTTS----SCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHH-------
T ss_pred cccCCC-----CCCCccEEEEechhhhC----CCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHH-------
Confidence 998876 67899999999999997 4568999999999999999998764321 000000000
Q ss_pred eEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHH
Q 017369 227 SVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFV 293 (372)
Q Consensus 227 ~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~ 293 (372)
.. ..++ ..++.+.+.+.++++++||+++....+...+
T Consensus 184 ----------~~-~~~~-------------------~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~ 220 (273)
T 3bus_A 184 ----------FR-AGGG-------------------VLSLGGIDEYESDVRQAELVVTSTVDISAQA 220 (273)
T ss_dssp ----------HH-HHHT-------------------CCCCCCHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ----------HH-hhcC-------------------ccCCCCHHHHHHHHHHcCCeEEEEEECcHhH
Confidence 00 0000 0136778899999999999999888776643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=155.91 Aligned_cols=147 Identities=21% Similarity=0.349 Sum_probs=111.1
Q ss_pred HHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChH
Q 017369 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118 (372)
Q Consensus 39 ~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~ 118 (372)
+|+.++..|+....... .......++...+... ..++.+|||+|||+|..+..++..+ .+|+|+|+|+.
T Consensus 2 ~y~~~a~~yd~~~~~~~---------~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~ 70 (246)
T 1y8c_A 2 CYNKFAHIYDKLIRADV---------DYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQE 70 (246)
T ss_dssp CHHHHHHHHHHHTTCSC---------CHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHH
T ss_pred hHHHHHHHHHHHccccc---------cHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHH
Confidence 57888899975332100 0122223333333221 2377899999999999999888764 48999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecc-cccccCCCHHHHHHHHHHHHHhcC
Q 017369 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLR 197 (372)
Q Consensus 119 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~Lk 197 (372)
|++.|+++.... ..++.++++|+.++++ + ++||+|++.. +++|+ .+..+...+|+++.++|+
T Consensus 71 ~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~-----~-~~fD~v~~~~~~l~~~-~~~~~~~~~l~~~~~~L~ 133 (246)
T 1y8c_A 71 MLSEAENKFRSQ----------GLKPRLACQDISNLNI-----N-RKFDLITCCLDSTNYI-IDSDDLKKYFKAVSNHLK 133 (246)
T ss_dssp HHHHHHHHHHHT----------TCCCEEECCCGGGCCC-----S-CCEEEEEECTTGGGGC-CSHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhhc----------CCCeEEEecccccCCc-----c-CCceEEEEcCcccccc-CCHHHHHHHHHHHHHhcC
Confidence 999999987631 2268999999988765 4 7899999998 99986 445788999999999999
Q ss_pred CCcEEEEEeCChHHHH
Q 017369 198 PGGTFIGTMPDANVII 213 (372)
Q Consensus 198 pgG~li~~~~~~~~~~ 213 (372)
|||.+++++++...+.
T Consensus 134 pgG~l~~~~~~~~~~~ 149 (246)
T 1y8c_A 134 EGGVFIFDINSYYKLS 149 (246)
T ss_dssp EEEEEEEEEECHHHHH
T ss_pred CCcEEEEEecCHHHHH
Confidence 9999999999886543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=162.14 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=115.7
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++.. . ++.++++|+.++ . +
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------------~-~v~~~~~d~~~~-~-----~ 100 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK------------D-GITYIHSRFEDA-Q-----L 100 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC------------S-CEEEEESCGGGC-C-----C
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhh------------C-CeEEEEccHHHc-C-----c
Confidence 4678999999999999998876544 89999999999999999875 1 689999999876 2 5
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHH-HhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVS-ALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~-~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
+++||+|++..+++|+ .++..+|+++. ++|||||++++++|+............+..
T Consensus 101 ~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------------------ 158 (250)
T 2p7i_A 101 PRRYDNIVLTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGII------------------ 158 (250)
T ss_dssp SSCEEEEEEESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSS------------------
T ss_pred CCcccEEEEhhHHHhh----cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCcc------------------
Confidence 6899999999999998 45689999999 999999999999988765443322111100
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecC
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKN 288 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~ 288 (372)
+....+.. ........+.++.+.+.++++++||+++....
T Consensus 159 -~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 198 (250)
T 2p7i_A 159 -SHNSAVTE------AEFAHGHRCTYALDTLERDASRAGLQVTYRSG 198 (250)
T ss_dssp -SSTTCCCH------HHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -ccchhccc------ccccccccccCCHHHHHHHHHHCCCeEEEEee
Confidence 00000000 00000001356888999999999999998753
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-19 Score=158.98 Aligned_cols=118 Identities=21% Similarity=0.244 Sum_probs=98.6
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..++....+.++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|+++... .++..++.++++|+
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~v~~~~~d~ 95 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEE--------LGVSERVHFIHNDA 95 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEESCC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh--------cCCCcceEEEECCh
Confidence 3455555566788999999999999999988876555899999999999999998763 33445799999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++++ +++||+|+|..+++|+ .++..+|+++.++|||||+++++.+
T Consensus 96 ~~~~~------~~~fD~V~~~~~~~~~----~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 96 AGYVA------NEKCDVAACVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp TTCCC------SSCEEEEEEESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCc------CCCCCEEEECCChHhc----CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 87653 4789999999999987 4578999999999999999998765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.6e-19 Score=153.87 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=126.8
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gv 113 (372)
+...++|+..+..|+..... ..++..++. .+.++.+|||+|||+|.++..++..+ .+|+|+
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~----------------~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~v 71 (211)
T 3e23_A 11 DDTLRFYRGNATAYAERQPR----------------SATLTKFLG--ELPAGAKILELGCGAGYQAEAMLAAG-FDVDAT 71 (211)
T ss_dssp HHHHHHHHHSHHHHTTCCCC----------------CHHHHHHHT--TSCTTCEEEESSCTTSHHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHHHHHHHhhccch----------------hHHHHHHHH--hcCCCCcEEEECCCCCHHHHHHHHcC-CeEEEE
Confidence 44567888888888753322 223333332 24578899999999999999888764 489999
Q ss_pred eCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHH
Q 017369 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193 (372)
Q Consensus 114 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~ 193 (372)
|+|+.+++.|+++.. +.+.++|+.+++ .+++||+|++..+++|+ ..++...+|+++.
T Consensus 72 D~s~~~~~~a~~~~~---------------~~~~~~d~~~~~------~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~ 128 (211)
T 3e23_A 72 DGSPELAAEASRRLG---------------RPVRTMLFHQLD------AIDAYDAVWAHACLLHV--PRDELADVLKLIW 128 (211)
T ss_dssp ESCHHHHHHHHHHHT---------------SCCEECCGGGCC------CCSCEEEEEECSCGGGS--CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcC---------------CceEEeeeccCC------CCCcEEEEEecCchhhc--CHHHHHHHHHHHH
Confidence 999999999998863 566888887765 36899999999999998 5568899999999
Q ss_pred HhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHH
Q 017369 194 ALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFK 273 (372)
Q Consensus 194 ~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~ 273 (372)
++|||||+++++++..... . . ..++. ....++.+.+.
T Consensus 129 ~~LkpgG~l~~~~~~~~~~----------------~-------------~--~~~~~------------~~~~~~~~~~~ 165 (211)
T 3e23_A 129 RALKPGGLFYASYKSGEGE----------------G-------------R--DKLAR------------YYNYPSEEWLR 165 (211)
T ss_dssp HHEEEEEEEEEEEECCSSC----------------E-------------E--CTTSC------------EECCCCHHHHH
T ss_pred HhcCCCcEEEEEEcCCCcc----------------c-------------c--cccch------------hccCCCHHHHH
Confidence 9999999999887544200 0 0 00110 11366889999
Q ss_pred HHHHHcC-cEEEEec
Q 017369 274 SLAEEYD-LELVFVK 287 (372)
Q Consensus 274 ~l~~~~G-f~~v~~~ 287 (372)
++++++| |+++...
T Consensus 166 ~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 166 ARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHCCCSEEEEE
T ss_pred HHHHhCCCcEEEEEE
Confidence 9999999 9998875
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=161.27 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=125.5
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..++..+.+.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++... .++..++.++++|+
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~ 131 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE--------VDSPRRKEVRIQGW 131 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHH--------SCCSSCEEEEECCG
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEECCH
Confidence 4445555666788999999999999999998876336899999999999999999864 34455799999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCC-----CHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGN 226 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~ 226 (372)
.++ +++||+|++..+++|+.+ ...+...+++++.++|||||++++..+...................
T Consensus 132 ~~~--------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 203 (302)
T 3hem_A 132 EEF--------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSL 203 (302)
T ss_dssp GGC--------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHH
T ss_pred HHc--------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccc
Confidence 754 378999999999999844 2256789999999999999999887643211100000000000000
Q ss_pred eEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHH
Q 017369 227 SVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFV 293 (372)
Q Consensus 227 ~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~ 293 (372)
..+..-.....||. .++.+.+.+.++++++||+++....+...+
T Consensus 204 ----~~~~~~~~~~~~p~-------------------~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 247 (302)
T 3hem_A 204 ----LRFIKFILTEIFPG-------------------GRLPRISQVDYYSSNAGWKVERYHRIGANY 247 (302)
T ss_dssp ----HHHHHHHHHHTCTT-------------------CCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred ----cchHHHHHHhcCCC-------------------CCCCCHHHHHHHHHhCCcEEEEEEeCchhH
Confidence 00000000001110 136678899999999999999888776544
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=154.01 Aligned_cols=141 Identities=20% Similarity=0.315 Sum_probs=107.8
Q ss_pred HHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChH
Q 017369 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118 (372)
Q Consensus 39 ~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~ 118 (372)
+|+.++..|+..... ..+..|...++.. +.++.+|||+|||+|..+..++.. .+|+|+|+|+.
T Consensus 3 ~y~~~a~~yd~~~~~-------------~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~ 65 (243)
T 3d2l_A 3 AYEQFAYVYDELMQD-------------VPYPEWVAWVLEQ--VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEE 65 (243)
T ss_dssp ---CTTHHHHHHTTT-------------CCHHHHHHHHHHH--SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHH
T ss_pred hHHHHHHHHHHhhhc-------------ccHHHHHHHHHHH--cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHH
Confidence 466677788753321 1234455544433 456789999999999999888765 68999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecc-cccccCCCHHHHHHHHHHHHHhcC
Q 017369 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLR 197 (372)
Q Consensus 119 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~Lk 197 (372)
+++.|+++.... ..++.++++|+.+.++ + ++||+|++.. +++|+ .+..+...+++++.++|+
T Consensus 66 ~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~-----~-~~fD~v~~~~~~~~~~-~~~~~~~~~l~~~~~~L~ 128 (243)
T 3d2l_A 66 MLEIAQEKAMET----------NRHVDFWVQDMRELEL-----P-EPVDAITILCDSLNYL-QTEADVKQTFDSAARLLT 128 (243)
T ss_dssp HHHHHHHHHHHT----------TCCCEEEECCGGGCCC-----S-SCEEEEEECTTGGGGC-CSHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHhhhhc----------CCceEEEEcChhhcCC-----C-CCcCEEEEeCCchhhc-CCHHHHHHHHHHHHHhcC
Confidence 999999987531 2468999999987764 3 7899999987 88875 456788999999999999
Q ss_pred CCcEEEEEeCChHHHH
Q 017369 198 PGGTFIGTMPDANVII 213 (372)
Q Consensus 198 pgG~li~~~~~~~~~~ 213 (372)
|||.+++++++...+.
T Consensus 129 pgG~l~~~~~~~~~~~ 144 (243)
T 3d2l_A 129 DGGKLLFDVHSPYKME 144 (243)
T ss_dssp EEEEEEEEEECHHHHH
T ss_pred CCeEEEEEcCCHHHHH
Confidence 9999999999886543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=159.00 Aligned_cols=121 Identities=13% Similarity=0.148 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.+...++......++ +|||+|||+|..+..++.....+|+|+|+|+.+++.|++++.. .++..++.++++|
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d 101 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIAD--------ANLNDRIQIVQGD 101 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEECB
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHh--------ccccCceEEEEcC
Confidence 344445555555555 9999999999999998877455899999999999999999764 3344579999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.++++ ++++||+|++..+++|+ .++..+++++.++|+|||.+++..+..
T Consensus 102 ~~~~~~-----~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 102 VHNIPI-----EDNYADLIVSRGSVFFW----EDVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp TTBCSS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHCCC-----CcccccEEEECchHhhc----cCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 998876 67899999999999997 567889999999999999999876543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=156.72 Aligned_cols=165 Identities=16% Similarity=0.225 Sum_probs=126.6
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
.+.++..+...++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++... ..++.++++|+.
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~~~d~~ 112 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG-----------NNKIIFEANDIL 112 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS-----------CTTEEEEECCTT
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc-----------CCCeEEEECccc
Confidence 444555556678899999999999999998876455899999999999999998752 157999999999
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH---HHHHHhhhcCCccCCeEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV---IIKKLREVEGLAIGNSVY 229 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~---~~~~l~~~~~~~~~~~~~ 229 (372)
++++ ++++||+|++..+++|+ +..+...+++++.++|||||.+++..+.... +...+..
T Consensus 113 ~~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~----------- 174 (266)
T 3ujc_A 113 TKEF-----PENNFDLIYSRDAILAL--SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKE----------- 174 (266)
T ss_dssp TCCC-----CTTCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHH-----------
T ss_pred cCCC-----CCCcEEEEeHHHHHHhc--ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHH-----------
Confidence 8876 67899999999999997 6688999999999999999999987643211 0000000
Q ss_pred EEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHH
Q 017369 230 WIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVH 294 (372)
Q Consensus 230 ~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~ 294 (372)
.. . . ....+.+.+.+.++++++||+++....+...+.
T Consensus 175 -------~~------------------~-~--~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 211 (266)
T 3ujc_A 175 -------YV------------------K-Q--RKYTLITVEEYADILTACNFKNVVSKDLSDYWN 211 (266)
T ss_dssp -------HH------------------H-H--HTCCCCCHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred -------HH------------------h-c--CCCCCCCHHHHHHHHHHcCCeEEEEEeCCHHHH
Confidence 00 0 0 001256788999999999999999887776544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=158.69 Aligned_cols=126 Identities=19% Similarity=0.228 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.++..++..+.. ++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++....+. .+..++.++++|
T Consensus 70 ~~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~------~~~~~v~~~~~d 141 (299)
T 3g2m_A 70 SEAREFATRTGP-VSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPA------DVRDRCTLVQGD 141 (299)
T ss_dssp HHHHHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCH------HHHTTEEEEECB
T ss_pred HHHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhccc------ccccceEEEeCc
Confidence 344445444443 44599999999999999998764 4799999999999999999864210 001469999999
Q ss_pred CcccccccccCCCCCeeEEEecc-cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 151 CYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
+.++++ +++||+|+|.+ +++|+ +.++...+|+++.++|||||+|++++++....
T Consensus 142 ~~~~~~------~~~fD~v~~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 196 (299)
T 3g2m_A 142 MSAFAL------DKRFGTVVISSGSINEL--DEADRRGLYASVREHLEPGGKFLLSLAMSEAA 196 (299)
T ss_dssp TTBCCC------SCCEEEEEECHHHHTTS--CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred hhcCCc------CCCcCEEEECCcccccC--CHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence 998764 57899999764 56654 55678999999999999999999999888655
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-18 Score=154.93 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=100.1
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc---c
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH---L 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~ 156 (372)
+...++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++...... .....++.+..+|+.+++ +
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~ 126 (293)
T 3thr_A 53 LRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRK-----EPAFDKWVIEEANWLTLDKDVP 126 (293)
T ss_dssp HHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTT-----SHHHHTCEEEECCGGGHHHHSC
T ss_pred hcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhccc-----ccccceeeEeecChhhCccccc
Confidence 3345788999999999999999988755 999999999999999887632100 001236788999998776 4
Q ss_pred ccccCCCCCeeEEEec-ccccccCC---CHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 157 DKVLADDAPFDICSCQ-FAMHYSWS---TEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~-~~l~~~~~---~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
++++||+|+|. .+++|+.+ +.+++..+++++.++|||||++++++|+.+.+...
T Consensus 127 -----~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 184 (293)
T 3thr_A 127 -----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILST 184 (293)
T ss_dssp -----CTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred -----cCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhhc
Confidence 57899999998 89998733 23568999999999999999999999999877654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=154.83 Aligned_cols=109 Identities=24% Similarity=0.345 Sum_probs=94.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++.. ..++.++++|+.++++
T Consensus 40 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~---- 103 (243)
T 3bkw_A 40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP------------DTGITYERADLDKLHL---- 103 (243)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC------------SSSEEEEECCGGGCCC----
T ss_pred cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc------------cCCceEEEcChhhccC----
Confidence 445788999999999999998887755589999999999999998765 2368999999988775
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
++++||+|++..+++|+ .+...+++++.++|+|||++++++++..
T Consensus 104 -~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 148 (243)
T 3bkw_A 104 -PQDSFDLAYSSLALHYV----EDVARLFRTVHQALSPGGHFVFSTEHPI 148 (243)
T ss_dssp -CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred -CCCCceEEEEecccccc----chHHHHHHHHHHhcCcCcEEEEEeCCcc
Confidence 57899999999999997 4578999999999999999999998864
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=155.92 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=107.1
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHH-HHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeC
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV-QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI 115 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~-~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~ 115 (372)
...|+..+..|+...... ...+...+..+.. ...+.++.+|||+|||+|..+..++.. ..+|+|+|+
T Consensus 2 ~~~~~~~a~~y~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~ 69 (263)
T 2yqz_A 2 SSALLRAAYAYDRLRAHP-----------PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDA 69 (263)
T ss_dssp CHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEES
T ss_pred CCchHHHHHHHhhhcccC-----------hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEEC
Confidence 457899999998543221 1122222222221 124567899999999999999988876 458999999
Q ss_pred ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHh
Q 017369 116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195 (372)
Q Consensus 116 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~ 195 (372)
|+.|++.|+++... ...++.++++|+.++++ ++++||+|++..++||+ .+...+++++.++
T Consensus 70 s~~~~~~a~~~~~~----------~~~~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~ 130 (263)
T 2yqz_A 70 DAAMLEVFRQKIAG----------VDRKVQVVQADARAIPL-----PDESVHGVIVVHLWHLV----PDWPKVLAEAIRV 130 (263)
T ss_dssp CHHHHHHHHHHTTT----------SCTTEEEEESCTTSCCS-----CTTCEEEEEEESCGGGC----TTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhc----------cCCceEEEEcccccCCC-----CCCCeeEEEECCchhhc----CCHHHHHHHHHHH
Confidence 99999999998721 13469999999988776 67899999999999997 4678999999999
Q ss_pred cCCCcEEEEEeC
Q 017369 196 LRPGGTFIGTMP 207 (372)
Q Consensus 196 LkpgG~li~~~~ 207 (372)
|||||.+++..+
T Consensus 131 L~pgG~l~~~~~ 142 (263)
T 2yqz_A 131 LKPGGALLEGWD 142 (263)
T ss_dssp EEEEEEEEEEEE
T ss_pred CCCCcEEEEEec
Confidence 999999988743
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=156.81 Aligned_cols=180 Identities=15% Similarity=0.162 Sum_probs=122.7
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+.+.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++... .++..++.++++|+.
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~ 124 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVAN--------SENLRSKRVLLAGWE 124 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT--------CCCCSCEEEEESCGG
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh--------cCCCCCeEEEECChh
Confidence 344444555678899999999999999988854344999999999999999998864 233457999999986
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIR 232 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 232 (372)
++ + ++||+|++..+++|+ +..+...+++++.++|||||.+++..+........ .. .+...... ...
T Consensus 125 ~~-------~-~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~-~~~~~~~~--~~~ 190 (287)
T 1kpg_A 125 QF-------D-EPVDRIVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEI-HE-RGLPMSFT--FAR 190 (287)
T ss_dssp GC-------C-CCCSEEEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHH-TT-TTCSCHHH--HHH
T ss_pred hC-------C-CCeeEEEEeCchhhc--ChHHHHHHHHHHHHhcCCCCEEEEEEecCCCcccc-cc-cccccccc--ccc
Confidence 43 3 789999999999997 33567899999999999999999877543211110 00 00000000 000
Q ss_pred eCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHH
Q 017369 233 LDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFV 293 (372)
Q Consensus 233 f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~ 293 (372)
+........|+. ..+.+.+.+.++++++||+++....+...+
T Consensus 191 ~~~~~~~~~~~~-------------------~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 232 (287)
T 1kpg_A 191 FLKFIVTEIFPG-------------------GRLPSIPMVQECASANGFTVTRVQSLQPHY 232 (287)
T ss_dssp HHHHHHHHTSTT-------------------CCCCCHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred hhhhHHheeCCC-------------------CCCCCHHHHHHHHHhCCcEEEEEEeCcHhH
Confidence 000000000110 135688999999999999999988776544
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-18 Score=148.83 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=90.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++.. ..++.++++|+.++ +
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~-------------~~~~~~~~~d~~~~-~----- 103 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGRHG-------------LDNVEFRQQDLFDW-T----- 103 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGGGC-------------CTTEEEEECCTTSC-C-----
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHhcC-------------CCCeEEEecccccC-C-----
Confidence 567789999999999999988877 448999999999999998721 24699999999876 4
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++++||+|++..+++|+ ..+....+++++.++|+|||.+++..++.
T Consensus 104 ~~~~~D~v~~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 104 PDRQWDAVFFAHWLAHV--PDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCCceeEEEEechhhcC--CHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 67899999999999998 44556899999999999999999887654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=154.38 Aligned_cols=112 Identities=20% Similarity=0.306 Sum_probs=93.8
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++..+...++.+|||+|||+|.++..++... .+|+|+|+|+.|++.|+++.... + ..++.++++|+.+++
T Consensus 29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~--------~-~~~v~~~~~d~~~l~ 98 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGN--------G-HQQVEYVQGDAEQMP 98 (260)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHT--------T-CCSEEEEECCC-CCC
T ss_pred HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhc--------C-CCceEEEEecHHhCC
Confidence 4444556788999999999999998887765 49999999999999999987531 1 136999999999888
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+ ++++||+|++..+++|+ .++..+|+++.++|||||++++..
T Consensus 99 ~-----~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 99 F-----TDERFHIVTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp S-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-----CCCCEEEEEEhhhhHhc----CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 7 67899999999999998 457799999999999999998864
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=153.81 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=129.3
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gv 113 (372)
+...+.|+..+..|++....... ......+...++..+...++.+|||+|||+|.++..++.. ..+|+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~v 80 (227)
T 3e8s_A 11 DALLDSWHQNAQAWIDAVRHGAI---------ESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGV 80 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC---------HHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEE
T ss_pred HHHHHHHHhhHHHHHHHhccccc---------ccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEE
Confidence 44567888888888753221100 0111112334444555567799999999999999888776 4489999
Q ss_pred eCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHH
Q 017369 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193 (372)
Q Consensus 114 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~ 193 (372)
|+|+.+++.|+++. ++.+.++|+.++.... .....+||+|++..+++ . .+...+++++.
T Consensus 81 D~s~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~fD~v~~~~~l~-~----~~~~~~l~~~~ 139 (227)
T 3e8s_A 81 DGDRTLVDAARAAG---------------AGEVHLASYAQLAEAK-VPVGKDYDLICANFALL-H----QDIIELLSAMR 139 (227)
T ss_dssp ESCHHHHHHHHHTC---------------SSCEEECCHHHHHTTC-SCCCCCEEEEEEESCCC-S----SCCHHHHHHHH
T ss_pred cCCHHHHHHHHHhc---------------ccccchhhHHhhcccc-cccCCCccEEEECchhh-h----hhHHHHHHHHH
Confidence 99999999998862 3667888887662110 11345699999999998 3 45679999999
Q ss_pred HhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHH
Q 017369 194 ALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFK 273 (372)
Q Consensus 194 ~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~ 273 (372)
++|||||++++++++...... ..+...+....+... . ..+ .....++.+.+.+.
T Consensus 140 ~~L~pgG~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~--~~~-----------~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 140 TLLVPGGALVIQTLHPWSVAD-------GDYQDGWREESFAGF------A--GDW-----------QPMPWYFRTLASWL 193 (227)
T ss_dssp HTEEEEEEEEEEECCTTTTCT-------TCCSCEEEEECCTTS------S--SCC-----------CCEEEEECCHHHHH
T ss_pred HHhCCCeEEEEEecCccccCc-------cccccccchhhhhcc------c--cCc-----------ccceEEEecHHHHH
Confidence 999999999999987642110 011122211111100 0 000 01122567889999
Q ss_pred HHHHHcCcEEEEec
Q 017369 274 SLAEEYDLELVFVK 287 (372)
Q Consensus 274 ~l~~~~Gf~~v~~~ 287 (372)
++++++||+++...
T Consensus 194 ~~l~~aGf~~~~~~ 207 (227)
T 3e8s_A 194 NALDMAGLRLVSLQ 207 (227)
T ss_dssp HHHHHTTEEEEEEE
T ss_pred HHHHHcCCeEEEEe
Confidence 99999999999875
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=156.70 Aligned_cols=176 Identities=15% Similarity=0.133 Sum_probs=119.2
Q ss_pred hhHHHHHHHHHH---hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc---------cc
Q 017369 69 LNNWIKSVLVQL---YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH---------QR 136 (372)
Q Consensus 69 ~~~~~k~~l~~~---~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------~~ 136 (372)
+.+|....+..+ ...++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|++++....... ..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~ 116 (263)
T 2a14_A 37 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE 116 (263)
T ss_dssp HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHh
Confidence 456766665554 345778999999999987766655555579999999999999998765321000 00
Q ss_pred -----------ccCCCcCeE-EEECcCccc-ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 137 -----------RKKFSFPAR-LICGDCYEV-HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 137 -----------~~~~~~~~~-~~~~D~~~~-~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
......++. ++++|+.+. ++... ..++||+|++++++||+..+.++...++++++++|||||+|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~--~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li 194 (263)
T 2a14_A 117 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPA--VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV 194 (263)
T ss_dssp HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTC--CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCCcchhhHHHHHHhhhheEEeccccCCCCCCcc--ccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 000011243 889999873 32110 246899999999999976667788999999999999999999
Q ss_pred EEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEE
Q 017369 204 GTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLEL 283 (372)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~ 283 (372)
++.... ...|.. |. ..+ +.+.++.+++.++++++||++
T Consensus 195 ~~~~~~----------------~~~~~~-----------------g~-~~~--------~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 195 TTVTLR----------------LPSYMV-----------------GK-REF--------SCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp EEEESS----------------CCEEEE-----------------TT-EEE--------ECCCCCHHHHHHHHHHTTEEE
T ss_pred EEEeec----------------Ccccee-----------------CC-eEe--------eccccCHHHHHHHHHHCCCEE
Confidence 875311 011110 00 001 112457789999999999999
Q ss_pred EEecC
Q 017369 284 VFVKN 288 (372)
Q Consensus 284 v~~~~ 288 (372)
++...
T Consensus 233 ~~~~~ 237 (263)
T 2a14_A 233 EQLLH 237 (263)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 98763
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=149.50 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=113.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+|||+|..+..++......|+|+|+|+.|++.|+++.... + ..++.++++|+.++++ ++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~-~~~~~~~~~d~~~~~~-----~~ 144 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------G-KRVRNYFCCGLQDFTP-----EP 144 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG--------G-GGEEEEEECCGGGCCC-----CS
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhc--------C-CceEEEEEcChhhcCC-----CC
Confidence 58899999999999998887766668999999999999999988631 1 2358899999988775 56
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFK 243 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~ 243 (372)
++||+|++..+++|+ .......+++++.++|||||+++++.+.... ...+ ..
T Consensus 145 ~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--------------~~~~----~~-------- 196 (241)
T 2ex4_A 145 DSYDVIWIQWVIGHL--TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE--------------GVIL----DD-------- 196 (241)
T ss_dssp SCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS--------------SEEE----ET--------
T ss_pred CCEEEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEEccCCC--------------ccee----cc--------
Confidence 789999999999998 4455679999999999999999987654321 0000 00
Q ss_pred CCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecC
Q 017369 244 SSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKN 288 (372)
Q Consensus 244 ~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~ 288 (372)
. ...+..+.+.+.++++++||+++....
T Consensus 197 -------------~----~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 197 -------------V----DSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp -------------T----TTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred -------------c----CCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 0 011355788999999999999998753
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=153.11 Aligned_cols=144 Identities=24% Similarity=0.421 Sum_probs=107.6
Q ss_pred HHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChH
Q 017369 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118 (372)
Q Consensus 39 ~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~ 118 (372)
+++.++.+|+........ .......++..++......++.+|||+|||+|..+..++..+ .+|+|+|+|+.
T Consensus 4 ~y~~~a~~yd~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~ 74 (252)
T 1wzn_A 4 LYTLLAEYYDTIYRRRIE--------RVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEE 74 (252)
T ss_dssp GGTTTGGGHHHHTHHHHH--------THHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHH
T ss_pred HHHHHHHHHHHHHhcchh--------hhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHH
Confidence 556677777653321111 012233566666665555678899999999999999988764 48999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEeccc-ccccCCCHHHHHHHHHHHHHhcC
Q 017369 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFA-MHYSWSTEARARRALANVSALLR 197 (372)
Q Consensus 119 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~i~~~Lk 197 (372)
|++.|+++.... ..++.++++|+.++++ .++||+|+|.++ ++|+ +.++...+++++.++|+
T Consensus 75 ~l~~a~~~~~~~----------~~~v~~~~~d~~~~~~------~~~fD~v~~~~~~~~~~--~~~~~~~~l~~~~~~L~ 136 (252)
T 1wzn_A 75 MLRVARRKAKER----------NLKIEFLQGDVLEIAF------KNEFDAVTMFFSTIMYF--DEEDLRKLFSKVAEALK 136 (252)
T ss_dssp HHHHHHHHHHHT----------TCCCEEEESCGGGCCC------CSCEEEEEECSSGGGGS--CHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHhc----------CCceEEEECChhhccc------CCCccEEEEcCCchhcC--CHHHHHHHHHHHHHHcC
Confidence 999999987531 2368999999988764 368999999754 4443 55788999999999999
Q ss_pred CCcEEEEEeCCh
Q 017369 198 PGGTFIGTMPDA 209 (372)
Q Consensus 198 pgG~li~~~~~~ 209 (372)
|||.+++++|+.
T Consensus 137 pgG~li~~~~~~ 148 (252)
T 1wzn_A 137 PGGVFITDFPCW 148 (252)
T ss_dssp EEEEEEEEEEC-
T ss_pred CCeEEEEeccch
Confidence 999999998874
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=150.13 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=118.5
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
..++......++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++... .++ .++.++++|+
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~~~~~~~d~ 97 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK--------LGL-KNVEVLKSEE 97 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--------HTC-TTEEEEECBT
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEeccc
Confidence 335555567788999999999999999988753 45899999999999999998753 122 2699999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEE
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI 231 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i 231 (372)
.++++ ++++||+|++..+++|+ .+...+++++.++|+|||.+++..+.....
T Consensus 98 ~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------------------- 149 (219)
T 3dh0_A 98 NKIPL-----PDNTVDFIFMAFTFHEL----SEPLKFLEELKRVAKPFAYLAIIDWKKEER------------------- 149 (219)
T ss_dssp TBCSS-----CSSCEEEEEEESCGGGC----SSHHHHHHHHHHHEEEEEEEEEEEECSSCC-------------------
T ss_pred ccCCC-----CCCCeeEEEeehhhhhc----CCHHHHHHHHHHHhCCCeEEEEEEeccccc-------------------
Confidence 88776 67899999999999997 457899999999999999998875433100
Q ss_pred EeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecC
Q 017369 232 RLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKN 288 (372)
Q Consensus 232 ~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~ 288 (372)
..+. .....++.+.+.++++++||+++....
T Consensus 150 ---------------~~~~-----------~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 180 (219)
T 3dh0_A 150 ---------------DKGP-----------PPEEVYSEWEVGLILEDAGIRVGRVVE 180 (219)
T ss_dssp ---------------SSSC-----------CGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ---------------ccCC-----------chhcccCHHHHHHHHHHCCCEEEEEEe
Confidence 0000 001255788999999999999998753
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=158.20 Aligned_cols=158 Identities=12% Similarity=0.131 Sum_probs=119.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++... .++..++.++++|+.++++
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~----- 181 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARE--------LRIDDHVRSRVCNMLDTPF----- 181 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEECCTTSCCC-----
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH--------cCCCCceEEEECChhcCCC-----
Confidence 567899999999999999988876345899999999999999998864 3445579999999998876
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
++++||+|++..+++|+ + ...+|+++.++|||||++++.++........ ......
T Consensus 182 ~~~~fD~V~~~~~l~~~--~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------------------~~~~~~-- 236 (312)
T 3vc1_A 182 DKGAVTASWNNESTMYV--D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQ------------------PSKWVS-- 236 (312)
T ss_dssp CTTCEEEEEEESCGGGS--C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCS------------------CCHHHH--
T ss_pred CCCCEeEEEECCchhhC--C---HHHHHHHHHHHcCCCcEEEEEEccccccccc------------------hhHHHH--
Confidence 67899999999999997 2 8899999999999999999877443210000 000000
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHH
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEF 292 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~ 292 (372)
.+.... .+ .+.+.+.+.++++++||+++....+...
T Consensus 237 -------------~~~~~~-~~-~~~s~~~~~~~l~~aGf~~~~~~~~~~~ 272 (312)
T 3vc1_A 237 -------------QINAHF-EC-NIHSRREYLRAMADNRLVPHTIVDLTPD 272 (312)
T ss_dssp -------------HHHHHH-TC-CCCBHHHHHHHHHTTTEEEEEEEECHHH
T ss_pred -------------HHHhhh-cC-CCCCHHHHHHHHHHCCCEEEEEEeCCHH
Confidence 000000 00 2667889999999999999999887754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=157.81 Aligned_cols=158 Identities=21% Similarity=0.363 Sum_probs=115.8
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++..+...++.+|||+|||+|.++..++. ...+|+|+|+|+.|++.|+++.. ++.+.++|+.+++
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~ 113 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYP--------------HLHFDVADARNFR 113 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCT--------------TSCEEECCTTTCC
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCC--------------CCEEEECChhhCC
Confidence 34444567889999999999999999887 45689999999999999988763 4788999998866
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH---HHHHHHhhhcCCccCCeEEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREVEGLAIGNSVYWIR 232 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~---~~~~~l~~~~~~~~~~~~~~i~ 232 (372)
+ +++||+|++..+++|+ .++..+++++.++|||||++++.+++.. .+...+..... ..+
T Consensus 114 ~------~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~------- 175 (279)
T 3ccf_A 114 V------DKPLDAVFSNAMLHWV----KEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALE-TLG------- 175 (279)
T ss_dssp C------SSCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHH-HHT-------
T ss_pred c------CCCcCEEEEcchhhhC----cCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHH-hcC-------
Confidence 4 4789999999999997 4577999999999999999999887542 22222211100 000
Q ss_pred eCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecC
Q 017369 233 LDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKN 288 (372)
Q Consensus 233 f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~ 288 (372)
+. + .....+.++.+.+.+.++++++||+++....
T Consensus 176 ---------~~----~---------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 209 (279)
T 3ccf_A 176 ---------IH----N---------PQALNPWYFPSIGEYVNILEKQGFDVTYAAL 209 (279)
T ss_dssp ---------CC----C---------GGGGCCCCCCCHHHHHHHHHHHTEEEEEEEE
T ss_pred ---------Cc----c---------ccCcCceeCCCHHHHHHHHHHcCCEEEEEEE
Confidence 00 0 0000111356788999999999999987553
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=151.71 Aligned_cols=104 Identities=24% Similarity=0.371 Sum_probs=89.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.+++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++.. ++.++++|+.++++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~----- 107 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP--------------DAVLHHGDMRDFSL----- 107 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTTCCC-----
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC--------------CCEEEECChHHCCc-----
Confidence 4567899999999999999887664 489999999999999998864 58899999988764
Q ss_pred CCCCeeEEEecc-cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+++||+|+|.. +++|+ .+.++...+|+++.++|||||.++++..
T Consensus 108 -~~~fD~v~~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 108 -GRRFSAVTCMFSSIGHL-AGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp -SCCEEEEEECTTGGGGS-CHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred -cCCcCEEEEcCchhhhc-CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 57899999998 99986 3346788999999999999999999753
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-17 Score=144.69 Aligned_cols=114 Identities=19% Similarity=0.208 Sum_probs=92.6
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCc----CeEEEECcCccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF----PARLICGDCYEV 154 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~~~ 154 (372)
+...++.+|||+|||+|.++..++.... ..|+|+|+|+.+++.|++++.. .++.. ++.++++|+...
T Consensus 25 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 25 LKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDR--------LRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTT--------CCCCHHHHTTEEEEECCTTSC
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHH--------hcCCcccCcceEEEeCCcccc
Confidence 3445788999999999999999887543 5899999999999999999763 22222 699999998765
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+. +.++||+|+|..+++|+ +.++...+++++.++|||||.++ .+++.
T Consensus 97 ~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~li-~~~~~ 143 (217)
T 3jwh_A 97 DK-----RFHGYDAATVIEVIEHL--DLSRLGAFERVLFEFAQPKIVIV-TTPNI 143 (217)
T ss_dssp CG-----GGCSCSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEEE-EEEBH
T ss_pred cc-----cCCCcCEEeeHHHHHcC--CHHHHHHHHHHHHHHcCCCEEEE-EccCc
Confidence 54 45789999999999998 55677899999999999999555 44444
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=154.40 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=109.1
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcc---------cccccCC------------Cc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH---------HQRRKKF------------SF 142 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------~~~~~~~------------~~ 142 (372)
++.+|||||||+|.....+......+|+|+|+|+.|++.|++++...... .....+. ..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 67899999999999544333334558999999999999999876531000 0000000 00
Q ss_pred CeEEEECcCcc-cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcC
Q 017369 143 PARLICGDCYE-VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEG 221 (372)
Q Consensus 143 ~~~~~~~D~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~ 221 (372)
.+.++++|+.+ +++.....++++||+|++.++++|+..+..++..+|+++.++|||||+|++...
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~-------------- 216 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA-------------- 216 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE--------------
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe--------------
Confidence 25677889887 554221114567999999999999654457899999999999999999988631
Q ss_pred CccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecCh
Q 017369 222 LAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNS 289 (372)
Q Consensus 222 ~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~ 289 (372)
....++.. . +.. .+.+.++.+.+.++++++||+++....+
T Consensus 217 --~~~~~~~~--~--------------~~~----------~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 217 --LEESWYLA--G--------------EAR----------LTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp --ESCCEEEE--T--------------TEE----------EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --cCcceEEc--C--------------Cee----------eeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 01111111 0 000 0113668889999999999999987633
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=157.47 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=89.0
Q ss_pred HHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCCh
Q 017369 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE 117 (372)
Q Consensus 38 ~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~ 117 (372)
+.|+.+|+.|++..... ...+..|+.. ....+.+|||||||+|..+..++..+ .+|+|+|+|+
T Consensus 9 d~F~~~a~~Y~~~Rp~y-----------p~~l~~~l~~-----~~~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~ 71 (257)
T 4hg2_A 9 DHFTPVADAYRAFRPRY-----------PRALFRWLGE-----VAPARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGE 71 (257)
T ss_dssp -----------CCCCCC-----------CHHHHHHHHH-----HSSCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCH
T ss_pred HHHHHHHHHHHHHCCCc-----------HHHHHHHHHH-----hcCCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcH
Confidence 36788899998532211 1122233222 23456799999999999999887654 5899999999
Q ss_pred HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcC
Q 017369 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR 197 (372)
Q Consensus 118 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk 197 (372)
.|++.|++ ..++.++++|+.++++ ++++||+|+|..++||+ +...+++++.++||
T Consensus 72 ~ml~~a~~---------------~~~v~~~~~~~e~~~~-----~~~sfD~v~~~~~~h~~-----~~~~~~~e~~rvLk 126 (257)
T 4hg2_A 72 AQIRQALR---------------HPRVTYAVAPAEDTGL-----PPASVDVAIAAQAMHWF-----DLDRFWAELRRVAR 126 (257)
T ss_dssp HHHHTCCC---------------CTTEEEEECCTTCCCC-----CSSCEEEEEECSCCTTC-----CHHHHHHHHHHHEE
T ss_pred Hhhhhhhh---------------cCCceeehhhhhhhcc-----cCCcccEEEEeeehhHh-----hHHHHHHHHHHHcC
Confidence 99987753 2369999999999988 78999999999999886 25579999999999
Q ss_pred CCcEEEEEe
Q 017369 198 PGGTFIGTM 206 (372)
Q Consensus 198 pgG~li~~~ 206 (372)
|||.|++..
T Consensus 127 pgG~l~~~~ 135 (257)
T 4hg2_A 127 PGAVFAAVT 135 (257)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEEE
Confidence 999987654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=145.58 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=91.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCc----CeEEEECcCccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF----PARLICGDCYEVHL 156 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~ 156 (372)
..++.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++.. .++.. ++.++++|+...+.
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKI--------DRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTG--------GGSCHHHHTTEEEEECCSSSCCG
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHh--------hccccccCcceEEEeCccccccc
Confidence 35778999999999999998887543 5899999999999999998763 22222 69999999976665
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.++||+|+|..+++|+ +.++...+++++.++|||||.+ +++|+.
T Consensus 99 -----~~~~fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~~-i~~~~~ 143 (219)
T 3jwg_A 99 -----RFSGYDAATVIEVIEHL--DENRLQAFEKVLFEFTRPQTVI-VSTPNK 143 (219)
T ss_dssp -----GGTTCSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEE-EEEEBG
T ss_pred -----ccCCCCEEEEHHHHHhC--CHHHHHHHHHHHHHhhCCCEEE-EEccch
Confidence 46799999999999998 5566789999999999999954 455543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=156.36 Aligned_cols=130 Identities=15% Similarity=0.220 Sum_probs=96.8
Q ss_pred HHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChH
Q 017369 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118 (372)
Q Consensus 39 ~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~ 118 (372)
+|+.++..|+..... ...+...++..+...++.+|||+|||+|.++..++. ...+|+|+|+|+.
T Consensus 4 ~y~~~a~~y~~~~~~---------------~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~ 67 (261)
T 3ege_A 4 IYNSIGKQYSQTRVP---------------DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIV 67 (261)
T ss_dssp ---------CCSBCC---------------CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHH
T ss_pred HHHHHHHHHhhcccc---------------cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHH
Confidence 678889999753322 123445555555667889999999999999999876 4458999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC
Q 017369 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP 198 (372)
Q Consensus 119 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp 198 (372)
|++.|+++. ++.++++|+.++++ ++++||+|++..+++|+ .++..+++++.++||
T Consensus 68 ~~~~a~~~~---------------~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~Lk- 122 (261)
T 3ege_A 68 MRQQAVVHP---------------QVEWFTGYAENLAL-----PDKSVDGVISILAIHHF----SHLEKSFQEMQRIIR- 122 (261)
T ss_dssp HHHSSCCCT---------------TEEEECCCTTSCCS-----CTTCBSEEEEESCGGGC----SSHHHHHHHHHHHBC-
T ss_pred HHHHHHhcc---------------CCEEEECchhhCCC-----CCCCEeEEEEcchHhhc----cCHHHHHHHHHHHhC-
Confidence 998775432 69999999988876 67899999999999998 567899999999999
Q ss_pred CcEEEEEeCCh
Q 017369 199 GGTFIGTMPDA 209 (372)
Q Consensus 199 gG~li~~~~~~ 209 (372)
||++++..++.
T Consensus 123 gG~~~~~~~~~ 133 (261)
T 3ege_A 123 DGTIVLLTFDI 133 (261)
T ss_dssp SSCEEEEEECG
T ss_pred CcEEEEEEcCC
Confidence 99887776654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-18 Score=150.71 Aligned_cols=154 Identities=17% Similarity=0.206 Sum_probs=115.9
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..++.....+ +.+|||+|||+|.++..++. ....|+|+|+|+.+++.|+++... .+...++.++++|+
T Consensus 55 ~l~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~ 124 (235)
T 3lcc_A 55 LIVHLVDTSSLP-LGRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGS--------SPKAEYFSFVKEDV 124 (235)
T ss_dssp HHHHHHHTTCSC-CEEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTT--------SGGGGGEEEECCCT
T ss_pred HHHHHHHhcCCC-CCCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhc--------cCCCcceEEEECch
Confidence 344444444333 45999999999999988765 445799999999999999999863 12245799999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEE
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI 231 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i 231 (372)
.+++ ++++||+|++..+++|+ +.++...+++++.++|||||++++.......
T Consensus 125 ~~~~------~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-------------------- 176 (235)
T 3lcc_A 125 FTWR------PTELFDLIFDYVFFCAI--EPEMRPAWAKSMYELLKPDGELITLMYPITD-------------------- 176 (235)
T ss_dssp TTCC------CSSCEEEEEEESSTTTS--CGGGHHHHHHHHHHHEEEEEEEEEEECCCSC--------------------
T ss_pred hcCC------CCCCeeEEEEChhhhcC--CHHHHHHHHHHHHHHCCCCcEEEEEEecccc--------------------
Confidence 8765 34689999999999997 4457889999999999999999876533210
Q ss_pred EeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 232 RLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 232 ~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
. ... +.+.++.+.+.++++++||+++......
T Consensus 177 ----~------~~~-----------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 208 (235)
T 3lcc_A 177 ----H------VGG-----------------PPYKVDVSTFEEVLVPIGFKAVSVEENP 208 (235)
T ss_dssp ----C------CSC-----------------SSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred ----c------CCC-----------------CCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence 0 000 1134677899999999999999876443
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-17 Score=144.59 Aligned_cols=113 Identities=22% Similarity=0.359 Sum_probs=95.2
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
.+....+.++.+|||+|||+|..+..++... ..|+|+|+|+.|++.|+++... .+ ..++.++++|+.+++
T Consensus 13 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~--------~~-~~~v~~~~~d~~~~~ 82 (239)
T 1xxl_A 13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQE--------KG-VENVRFQQGTAESLP 82 (239)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHH--------HT-CCSEEEEECBTTBCC
T ss_pred HHHHhCcCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHH--------cC-CCCeEEEecccccCC
Confidence 4455567889999999999999998887665 4899999999999999998753 11 136899999998877
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+ ++++||+|++..+++|+ .++..+++++.++|||||++++..+
T Consensus 83 ~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 83 F-----PDDSFDIITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp S-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-----CCCcEEEEEECCchhhc----cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 6 67899999999999997 4578999999999999999988653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-17 Score=143.52 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=94.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
++++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++....+.. .....++.++++|+..+++
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~----- 97 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLN----QKTGGKAEFKVENASSLSF----- 97 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCC----SSSSCEEEEEECCTTSCCS-----
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCc----cccCcceEEEEecccccCC-----
Confidence 468899999999999999998877 448999999999999999988642210 1112368999999988776
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++++||+|++..+++|+ .+......+++++.++|||||++++..+.
T Consensus 98 ~~~~~D~v~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 98 HDSSFDFAVMQAFLTSV-PDPKERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp CTTCEEEEEEESCGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCCceeEEEEcchhhcC-CCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 67899999999999986 34455669999999999999999987653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=146.67 Aligned_cols=105 Identities=26% Similarity=0.372 Sum_probs=89.3
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|..+..++.... +|+|+|+|+.|++.|+++.. ++.++++|+.++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~------ 97 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP--------------DATLHQGDMRDFRL------ 97 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT--------------TCEEEECCTTTCCC------
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC--------------CCEEEECCHHHccc------
Confidence 6788999999999999998887654 89999999999999998764 48899999987653
Q ss_pred CCCeeEEEecc-cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+++||+|+|.+ +++|+ .+.++...+++++.++|+|||.++++.++.
T Consensus 98 ~~~~D~v~~~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYL-KTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp SSCEEEEEECTTGGGGC-CSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CCCCcEEEEcCchHhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 46899999765 78875 345788999999999999999999987654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=144.58 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=92.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|+++.... ..++.++++|+.++++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~----- 85 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN----------NFKLNISKGDIRKLPF----- 85 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH----------TCCCCEEECCTTSCCS-----
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc----------CCceEEEECchhhCCC-----
Confidence 4578899999999999855554444558999999999999999987521 2358889999988776
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++++||+|++..+++|+ +..+...+++++.++|||||.+++++++.
T Consensus 86 ~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 86 KDESMSFVYSYGTIFHM--RKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp CTTCEEEEEECSCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred CCCceeEEEEcChHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 57899999999999987 56789999999999999999999887544
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=149.11 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=89.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc--cccc------CCCcCeEEEECcCcc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH--QRRK------KFSFPARLICGDCYE 153 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~------~~~~~~~~~~~D~~~ 153 (372)
..++.+|||+|||+|.++..++..+. .|+|+|+|+.|++.|+++........ .... ....++.++++|+.+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35788999999999999999887655 89999999999999987753100000 0000 013479999999998
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
++.. ..++||+|++..+++++ +.++...+++++.++|||||++++.
T Consensus 145 l~~~----~~~~FD~V~~~~~l~~l--~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 145 LPRA----NIGKFDRIWDRGALVAI--NPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GGGG----CCCCEEEEEESSSTTTS--CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCcc----cCCCEEEEEEhhhhhhC--CHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 8752 13799999999999887 4456778999999999999998644
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-18 Score=150.38 Aligned_cols=145 Identities=18% Similarity=0.160 Sum_probs=112.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--ccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~ 159 (372)
+.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++ +.++++|+.+. ++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-----------------~~~~~~d~~~~~~~~--- 97 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK-----------------FNVVKSDAIEYLKSL--- 97 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT-----------------SEEECSCHHHHHHTS---
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh-----------------cceeeccHHHHhhhc---
Confidence 45778999999999999988877644 799999999999998753 56788888764 44
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFAD 239 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~ 239 (372)
++++||+|++..+++|+ ..++...+++++.++|||||++++++++...........
T Consensus 98 --~~~~fD~i~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-------------------- 153 (240)
T 3dli_A 98 --PDKYLDGVMISHFVEHL--DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFY-------------------- 153 (240)
T ss_dssp --CTTCBSEEEEESCGGGS--CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHT--------------------
T ss_pred --CCCCeeEEEECCchhhC--CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHh--------------------
Confidence 56899999999999998 344678999999999999999999998865443211100
Q ss_pred cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 240 KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 240 ~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
..+ .. .+.++.+.+.++++++||+++....+.
T Consensus 154 -~~~--------------~~----~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 154 -IDP--------------TH----KKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp -TST--------------TC----CSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred -cCc--------------cc----cccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 000 00 135677899999999999999877543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=149.52 Aligned_cols=137 Identities=19% Similarity=0.218 Sum_probs=103.9
Q ss_pred HHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChH
Q 017369 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118 (372)
Q Consensus 39 ~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~ 118 (372)
+|+.++..|+........ .........++... ..++.+|||+|||+|..+..+ +..+++|+|+|+.
T Consensus 2 ~fd~~a~~y~~~~~~~~~----------~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~ 67 (211)
T 2gs9_A 2 PFASLAEAYEAWYGTPLG----------AYVIAEEERALKGL-LPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEA 67 (211)
T ss_dssp TTTTTTTTTTGGGGSHHH----------HHHHHHHHHHHHTT-CCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHH
T ss_pred chhhHHHHHHHHhcccch----------hhhHHHHHHHHHHh-cCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHH
Confidence 466677777754333211 11112333344433 347889999999999888766 3348999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC
Q 017369 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP 198 (372)
Q Consensus 119 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp 198 (372)
|++.|+++.. ++.++++|+.++++ ++++||+|++..+++|+ .+...+++++.++|||
T Consensus 68 ~~~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~p 124 (211)
T 2gs9_A 68 MLAVGRRRAP--------------EATWVRAWGEALPF-----PGESFDVVLLFTTLEFV----EDVERVLLEARRVLRP 124 (211)
T ss_dssp HHHHHHHHCT--------------TSEEECCCTTSCCS-----CSSCEEEEEEESCTTTC----SCHHHHHHHHHHHEEE
T ss_pred HHHHHHHhCC--------------CcEEEEcccccCCC-----CCCcEEEEEEcChhhhc----CCHHHHHHHHHHHcCC
Confidence 9999998763 47889999988776 67899999999999997 4678999999999999
Q ss_pred CcEEEEEeCChHHH
Q 017369 199 GGTFIGTMPDANVI 212 (372)
Q Consensus 199 gG~li~~~~~~~~~ 212 (372)
||.+++++++....
T Consensus 125 gG~l~i~~~~~~~~ 138 (211)
T 2gs9_A 125 GGALVVGVLEALSP 138 (211)
T ss_dssp EEEEEEEEECTTSH
T ss_pred CCEEEEEecCCcCc
Confidence 99999999876543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=152.02 Aligned_cols=181 Identities=10% Similarity=0.068 Sum_probs=123.1
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..++..+...++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++... .++..++.++++|+
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~ 149 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLAS--------IDTNRSRQVLLQGW 149 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT--------SCCSSCEEEEESCG
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEECCh
Confidence 3444444455678899999999999999988876334899999999999999999864 23345799999998
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEE
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI 231 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i 231 (372)
.+++ ++||+|++..+++|+ +.++...+++++.++|||||.+++.++........ ... +.... +...
T Consensus 150 ~~~~--------~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~-~~~~~--~~~~ 215 (318)
T 2fk8_A 150 EDFA--------EPVDRIVSIEAFEHF--GHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEM-AAR-GKKLS--FETA 215 (318)
T ss_dssp GGCC--------CCCSEEEEESCGGGT--CGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHH-HTT-CHHHH--HHHH
T ss_pred HHCC--------CCcCEEEEeChHHhc--CHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhh-hhc-ccccc--cccc
Confidence 6532 689999999999997 33578899999999999999999877543211100 000 00000 0000
Q ss_pred EeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHH
Q 017369 232 RLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFV 293 (372)
Q Consensus 232 ~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~ 293 (372)
.+........|+. .++.+.+.+.++++++||+++....+...+
T Consensus 216 ~~~~~~~~~~~~~-------------------~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 258 (318)
T 2fk8_A 216 RFIKFIVTEIFPG-------------------GRLPSTEMMVEHGEKAGFTVPEPLSLRPHY 258 (318)
T ss_dssp HHHHHHHHHTSTT-------------------CCCCCHHHHHHHHHHTTCBCCCCEECHHHH
T ss_pred chhhHHHHhcCCC-------------------CcCCCHHHHHHHHHhCCCEEEEEEecchhH
Confidence 0000000000110 136688999999999999999887766543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=143.77 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=121.7
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCC
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA 116 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s 116 (372)
-.+|+..++.|+........ .+...+. .+... .++.+|||+|||+|.++..++.. +|+|+|
T Consensus 14 ~~~~~~~~~~y~~~~~~~~~-----------~~~~~~~-~l~~~--~~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s 74 (219)
T 1vlm_A 14 WHIFERFVNEYERWFLVHRF-----------AYLSELQ-AVKCL--LPEGRGVEIGVGTGRFAVPLKIK-----IGVEPS 74 (219)
T ss_dssp THHHHHTHHHHHHHHHHTHH-----------HHHHHHH-HHHHH--CCSSCEEEETCTTSTTHHHHTCC-----EEEESC
T ss_pred eeecchhHHHHHHHHHhcch-----------hHHHHHH-HHHHh--CCCCcEEEeCCCCCHHHHHHHHH-----hccCCC
Confidence 34778888888765433211 1112222 22222 24889999999999999887543 999999
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhc
Q 017369 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL 196 (372)
Q Consensus 117 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L 196 (372)
+.+++.|+++ ++.++++|+.++++ ++++||+|++..+++|+ .++..+++++.++|
T Consensus 75 ~~~~~~a~~~----------------~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L 129 (219)
T 1vlm_A 75 ERMAEIARKR----------------GVFVLKGTAENLPL-----KDESFDFALMVTTICFV----DDPERALKEAYRIL 129 (219)
T ss_dssp HHHHHHHHHT----------------TCEEEECBTTBCCS-----CTTCEEEEEEESCGGGS----SCHHHHHHHHHHHE
T ss_pred HHHHHHHHhc----------------CCEEEEcccccCCC-----CCCCeeEEEEcchHhhc----cCHHHHHHHHHHHc
Confidence 9999999875 27789999988776 56799999999999997 45679999999999
Q ss_pred CCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHH
Q 017369 197 RPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLA 276 (372)
Q Consensus 197 kpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~ 276 (372)
+|||.+++++++............. .+ ..+ .. ...+++.+.+.+++
T Consensus 130 ~pgG~l~i~~~~~~~~~~~~~~~~~--~~--------------------~~~--------~~----~~~~~~~~~l~~~l 175 (219)
T 1vlm_A 130 KKGGYLIVGIVDRESFLGREYEKNK--EK--------------------SVF--------YK----NARFFSTEELMDLM 175 (219)
T ss_dssp EEEEEEEEEEECSSSHHHHHHHHTT--TC---------------------CC--------ST----TCCCCCHHHHHHHH
T ss_pred CCCcEEEEEEeCCccHHHHHHHHHh--cC--------------------cch--------hc----ccccCCHHHHHHHH
Confidence 9999999988765433322211100 00 000 00 01367889999999
Q ss_pred HHcCcEEEEec
Q 017369 277 EEYDLELVFVK 287 (372)
Q Consensus 277 ~~~Gf~~v~~~ 287 (372)
+++||+++...
T Consensus 176 ~~~Gf~~~~~~ 186 (219)
T 1vlm_A 176 RKAGFEEFKVV 186 (219)
T ss_dssp HHTTCEEEEEE
T ss_pred HHCCCeEEEEe
Confidence 99999998765
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=148.89 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=95.5
Q ss_pred HHhCCCCCEEEEecCCccccHHHHH--HcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWD--KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~--~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
...+.++.+|||+|||+|..+..++ .....+|+|+|+|+.+++.|+++... .++..++.++++|+.++++
T Consensus 113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~ 184 (305)
T 3ocj_A 113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAG--------HALAGQITLHRQDAWKLDT 184 (305)
T ss_dssp HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTT--------STTGGGEEEEECCGGGCCC
T ss_pred HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEECchhcCCc
Confidence 4456789999999999999998874 33456899999999999999999874 3344569999999998776
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+ ++||+|++..+++|+ .+......+++++.++|||||+++++...
T Consensus 185 -----~-~~fD~v~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 229 (305)
T 3ocj_A 185 -----R-EGYDLLTSNGLNIYE-PDDARVTELYRRFWQALKPGGALVTSFLT 229 (305)
T ss_dssp -----C-SCEEEEECCSSGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred -----c-CCeEEEEECChhhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 899999999999986 34555667999999999999999987744
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=147.33 Aligned_cols=109 Identities=20% Similarity=0.303 Sum_probs=93.7
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++.... +.++.++++|+.+.++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~v~~~~~d~~~~~~-- 86 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----------PYDSEFLEGDATEIEL-- 86 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS----------SSEEEEEESCTTTCCC--
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc----------CCceEEEEcchhhcCc--
Confidence 34678999999999999999887752 358999999999999999998631 3379999999998765
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+++||+|++..+++|+ .+...+++++.++|||||++++..|+.
T Consensus 87 ----~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (284)
T 3gu3_A 87 ----NDKYDIAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPHW 129 (284)
T ss_dssp ----SSCEEEEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred ----CCCeeEEEECChhhcC----CCHHHHHHHHHHHcCCCCEEEEEecch
Confidence 3689999999999997 556799999999999999999999883
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=144.98 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEe
Q 017369 35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID 114 (372)
Q Consensus 35 ~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD 114 (372)
.....+++++..|+...... . .+.....+..++.... .++.+|||+|||+|.++..++..+ .+|+|+|
T Consensus 16 ~~~~~~~~~a~~Yd~~~~~~-~---------~~~~~~~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD 83 (260)
T 2avn_A 16 RSWEFYDRIARAYDSMYETP-K---------WKLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQERG-FEVVLVD 83 (260)
T ss_dssp CHHHHHHHHHHHHGGGGCSH-H---------HHHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTTT-CEEEEEE
T ss_pred hhcchhhHHHHHHHHhcccc-c---------hhHHHHHHHHHHHHhc-CCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEe
Confidence 34568999999998655221 1 1122233444444433 478899999999999999887664 4899999
Q ss_pred CChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 115 ~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
+|+.|++.|+++... .++++|+.++++ ++++||+|++..+++|+.. ++..+|+++.+
T Consensus 84 ~s~~~l~~a~~~~~~---------------~~~~~d~~~~~~-----~~~~fD~v~~~~~~~~~~~---~~~~~l~~~~~ 140 (260)
T 2avn_A 84 PSKEMLEVAREKGVK---------------NVVEAKAEDLPF-----PSGAFEAVLALGDVLSYVE---NKDKAFSEIRR 140 (260)
T ss_dssp SCHHHHHHHHHHTCS---------------CEEECCTTSCCS-----CTTCEEEEEECSSHHHHCS---CHHHHHHHHHH
T ss_pred CCHHHHHHHHhhcCC---------------CEEECcHHHCCC-----CCCCEEEEEEcchhhhccc---cHHHHHHHHHH
Confidence 999999999987641 278999988776 6789999999887666533 37899999999
Q ss_pred hcCCCcEEEEEeCChHHHHH
Q 017369 195 LLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 195 ~LkpgG~li~~~~~~~~~~~ 214 (372)
+|||||.+++++++....+.
T Consensus 141 ~LkpgG~l~~~~~~~~~~~~ 160 (260)
T 2avn_A 141 VLVPDGLLIATVDNFYTFLQ 160 (260)
T ss_dssp HEEEEEEEEEEEEBHHHHHH
T ss_pred HcCCCeEEEEEeCChHHHHH
Confidence 99999999999998764433
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-17 Score=147.83 Aligned_cols=111 Identities=23% Similarity=0.361 Sum_probs=94.6
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++.... + ..++.++++|+.++++
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~-~~~~~~~~~d~~~~~~--- 101 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN--------G-IKNVKFLQANIFSLPF--- 101 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT--------T-CCSEEEEECCGGGCCS---
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------C-CCCcEEEEcccccCCC---
Confidence 34688999999999999999888764 468999999999999999987631 1 2369999999998776
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++++||+|++..+++|+ .+...+++++.++|||||++++..++.
T Consensus 102 --~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 102 --EDSSFDHIFVCFVLEHL----QSPEEALKSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp --CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred --CCCCeeEEEEechhhhc----CCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 67899999999999998 456799999999999999999887553
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-17 Score=145.80 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
...++..+...++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++.. ++.++++|+
T Consensus 22 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~--------------~~~~~~~d~ 87 (259)
T 2p35_A 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP--------------NTNFGKADL 87 (259)
T ss_dssp HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST--------------TSEEEECCT
T ss_pred HHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC--------------CcEEEECCh
Confidence 344555555667889999999999999988775 34589999999999999998743 588999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.+++ ++++||+|++..+++|+ .+...+++++.++|||||++++++|+.
T Consensus 88 ~~~~------~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 88 ATWK------PAQKADLLYANAVFQWV----PDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp TTCC------CSSCEEEEEEESCGGGS----TTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred hhcC------ccCCcCEEEEeCchhhC----CCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 8765 35789999999999998 568899999999999999999988753
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-17 Score=146.38 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=112.3
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc---------cccc-----------CCCc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH---------QRRK-----------KFSF 142 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------~~~~-----------~~~~ 142 (372)
.++.+|||+|||+|.++..++..+...|+|+|+|+.|++.|+++........ .... .+..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4678999999999999888776555589999999999999999876311000 0000 0001
Q ss_pred Ce-EEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcC
Q 017369 143 PA-RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEG 221 (372)
Q Consensus 143 ~~-~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~ 221 (372)
++ .++++|+.+....... ..++||+|++.++++++.....+...+++++.++|||||++++..+...
T Consensus 135 ~v~~~~~~d~~~~~~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~----------- 202 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGV-SLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKS----------- 202 (265)
T ss_dssp HEEEEEECCTTSSSTTTTC-CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC-----------
T ss_pred hheeEEEeeeccCCCCCcc-ccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCC-----------
Confidence 27 8999999875421000 2278999999999996655557899999999999999999988763211
Q ss_pred CccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecC
Q 017369 222 LAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKN 288 (372)
Q Consensus 222 ~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~ 288 (372)
..|.. .......+.++.+.+.++++++||+++....
T Consensus 203 -----~~~~~--------------------------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 203 -----SYYMI--------------------------GEQKFSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp -----CEEEE--------------------------TTEEEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -----ceEEc--------------------------CCccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 01110 0000011245677899999999999998763
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-16 Score=135.40 Aligned_cols=105 Identities=25% Similarity=0.326 Sum_probs=90.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++.. ++.++++|+.+.++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~--------------~~~~~~~d~~~~~~----- 103 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFP--------------EARWVVGDLSVDQI----- 103 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTTSCC-----
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCC--------------CCcEEEcccccCCC-----
Confidence 5788999999999999999888764 489999999999999998764 47889999988765
Q ss_pred CCCCeeEEEec-ccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQ-FAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++++||+|++. .+++|+ +.++...+++++.++|+|||.+++.+++
T Consensus 104 ~~~~~D~i~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 104 SETDFDLIVSAGNVMGFL--AEDGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp CCCCEEEEEECCCCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CCCceeEEEECCcHHhhc--ChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 56889999998 677776 5677899999999999999999887643
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=138.72 Aligned_cols=113 Identities=26% Similarity=0.397 Sum_probs=94.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++.... +++|+|+|+.+++.|+++.... ..++.++++|+.++++
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~----- 99 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR----------ESNVEFIVGDARKLSF----- 99 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT----------TCCCEEEECCTTSCCS-----
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc----------CCCceEEECchhcCCC-----
Confidence 35688999999999999988877655 9999999999999999987531 2468999999988765
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
++++||+|++..++++. ...+...+++++.++|+|||.+++..++....
T Consensus 100 ~~~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 148 (227)
T 1ve3_A 100 EDKTFDYVIFIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTDLREL 148 (227)
T ss_dssp CTTCEEEEEEESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred CCCcEEEEEEcCchHhC--CHHHHHHHHHHHHHHcCCCcEEEEEecChHHH
Confidence 56799999999985543 34788999999999999999999998876543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=158.48 Aligned_cols=116 Identities=22% Similarity=0.322 Sum_probs=91.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-----
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV----- 154 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~----- 154 (372)
..++.+|||+|||+|.++..++.. ...+|+|+|+|+.|++.|+++......... -.....++.++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-g~~~~~~v~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF-GSPSRSNVRFLKGFIENLATAEP 159 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHH-SSTTCCCEEEEESCTTCGGGCBS
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcc-cccCCCceEEEEccHHHhhhccc
Confidence 457899999999999999888775 455899999999999999987642100000 000124799999999886
Q ss_pred -ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 155 -HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 155 -~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
++ ++++||+|++..+++|+ .++..+|+++.++|||||+|+++.+
T Consensus 160 ~~~-----~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 160 EGV-----PDSSVDIVISNCVCNLS----TNKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp CCC-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC-----CCCCEEEEEEccchhcC----CCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 55 67899999999999997 4578999999999999999998764
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=140.64 Aligned_cols=103 Identities=15% Similarity=0.233 Sum_probs=87.6
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+...++.+|||+|||+|.++..++.... +|+|+|+|+.+++.|+++.. ++.+.++| .++
T Consensus 12 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--------------~v~~~~~d---~~~-- 71 (170)
T 3i9f_A 12 NIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD--------------SVITLSDP---KEI-- 71 (170)
T ss_dssp HHHSSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT--------------TSEEESSG---GGS--
T ss_pred hcCcCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCC--------------CcEEEeCC---CCC--
Confidence 34567888999999999999999887654 89999999999999998733 58889888 444
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++++||+|++..+++|+ .+...+++++.++|||||++++..+.
T Consensus 72 ---~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~ 114 (170)
T 3i9f_A 72 ---PDNSVDFILFANSFHDM----DDKQHVISEVKRILKDDGRVIIIDWR 114 (170)
T ss_dssp ---CTTCEEEEEEESCSTTC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---CCCceEEEEEccchhcc----cCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 56899999999999997 45789999999999999999887543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-18 Score=162.54 Aligned_cols=162 Identities=17% Similarity=0.232 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 70 ~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
..+...++......++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++... .....+...
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~~~~ 160 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIR-----------VRTDFFEKA 160 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCC-----------EECSCCSHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCC-----------cceeeechh
Confidence 34455555555667889999999999999999887654 899999999999999876210 000112233
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEE
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVY 229 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~ 229 (372)
++..+++ ++++||+|++..+++|+ .++..+++++.++|||||++++++|+...+.....
T Consensus 161 ~~~~l~~-----~~~~fD~I~~~~vl~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~------------ 219 (416)
T 4e2x_A 161 TADDVRR-----TEGPANVIYAANTLCHI----PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTS------------ 219 (416)
T ss_dssp HHHHHHH-----HHCCEEEEEEESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTC------------
T ss_pred hHhhccc-----CCCCEEEEEECChHHhc----CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcc------------
Confidence 3444444 46899999999999998 57899999999999999999999998866543200
Q ss_pred EEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 230 WIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 230 ~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
|...| .+. .++++.+.+.++++++||+++....++
T Consensus 220 ------------------~~~~~----~~~----~~~~s~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 220 ------------------FDQIF----DEH----FFLFSATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp ------------------GGGCS----TTC----CEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ------------------hhhhh----hhh----hhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence 00000 001 135688899999999999998876543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=147.34 Aligned_cols=115 Identities=9% Similarity=-0.005 Sum_probs=81.2
Q ss_pred CCCCEEEEecCCccccHHHH----HHc-CCCE--EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe--EEEECcCcc
Q 017369 83 RRGDVVLDLACGKGGDLIKW----DKA-KIGY--YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA--RLICGDCYE 153 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l----~~~-~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~D~~~ 153 (372)
.++.+|||||||+|..+..+ ... .... ++|+|+|++|++.|+++.... .+ ..++ .+.++++.+
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~-------~~-~~~v~~~~~~~~~~~ 122 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT-------SN-LENVKFAWHKETSSE 122 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC-------SS-CTTEEEEEECSCHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc-------cC-CCcceEEEEecchhh
Confidence 46789999999999755433 222 2333 499999999999999987531 01 1234 444555544
Q ss_pred ccccc-ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 154 VHLDK-VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 154 ~~~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++... ...++++||+|++..++||+ +++..+|++++++|||||++++..++.
T Consensus 123 ~~~~~~~~~~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 123 YQSRMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp HHHHHHTTTCCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred hhhhhccccCCCceeEEEEeeeeeec----CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 32000 00046889999999999998 568899999999999999999876544
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=142.66 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CC-CEEEEEeCChH------HHHHHHHHhcCCCcccccccCCCc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KI-GYYVGIDIAEG------SIEDCRTRYNGDADHHQRRKKFSF 142 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~gvD~s~~------~l~~a~~~~~~~~~~~~~~~~~~~ 142 (372)
.+...++..+.+.++.+|||||||+|.++..++.. +. .+|+|+|+|+. +++.|++++.. .++..
T Consensus 30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~--------~~~~~ 101 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA--------GPLGD 101 (275)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHT--------STTGG
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHh--------cCCCC
Confidence 44555666667788999999999999999988875 33 68999999997 99999999864 23345
Q ss_pred CeEEEECc---CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 143 PARLICGD---CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 143 ~~~~~~~D---~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
++.++++| ...+++ ++++||+|++..+++|+ .+...+++.+.++++|||++++...
T Consensus 102 ~v~~~~~d~~~~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 102 RLTVHFNTNLSDDLGPI-----ADQHFDRVVLAHSLWYF----ASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp GEEEECSCCTTTCCGGG-----TTCCCSEEEEESCGGGS----SCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred ceEEEECChhhhccCCC-----CCCCEEEEEEccchhhC----CCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 79999998 334444 56899999999999987 2344577777788888999988653
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-17 Score=142.26 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=110.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--ccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--VHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~ 160 (372)
.++.+|||+|||+|..+..++.. ..+++|+|+|+.+++.|+++. ..++++|+.+ .++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~----------------~~~~~~d~~~~~~~~---- 89 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL----------------DHVVLGDIETMDMPY---- 89 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS----------------SEEEESCTTTCCCCS----
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC----------------CcEEEcchhhcCCCC----
Confidence 57889999999999999988877 468999999999999987653 2578889876 333
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhc
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
++++||+|++..+++|+ .+...+++++.++|+|||.+++++|+........... ...+. .
T Consensus 90 -~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~-~~~~~-------~------- 149 (230)
T 3cc8_A 90 -EEEQFDCVIFGDVLEHL----FDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLL-AGNWT-------Y------- 149 (230)
T ss_dssp -CTTCEEEEEEESCGGGS----SCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHH-TTCCC-------C-------
T ss_pred -CCCccCEEEECChhhhc----CCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHh-cCCce-------e-------
Confidence 46789999999999997 3467999999999999999999998764322111100 00000 0
Q ss_pred ccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecCh
Q 017369 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNS 289 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~ 289 (372)
.. .+. ........++.+.+.++++++||+++....+
T Consensus 150 --~~---~~~--------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 150 --TE---YGL--------LDKTHIRFFTFNEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp --BS---SST--------TBTTCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --cc---CCC--------CCcceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence 00 000 0000113678899999999999999876654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=138.48 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=94.3
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++... ..++.++++|+.+++
T Consensus 48 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~~~d~~~~~----- 110 (216)
T 3ofk_A 48 SSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKR-----------WSHISWAATDILQFS----- 110 (216)
T ss_dssp TTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTT-----------CSSEEEEECCTTTCC-----
T ss_pred ccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhccc-----------CCCeEEEEcchhhCC-----
Confidence 44567899999999999999887764 4899999999999999998863 237999999998765
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
++++||+|+|..+++|+ .+......+++++.++|||||.++++++...
T Consensus 111 -~~~~fD~v~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 158 (216)
T 3ofk_A 111 -TAELFDLIVVAEVLYYL-EDMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158 (216)
T ss_dssp -CSCCEEEEEEESCGGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred -CCCCccEEEEccHHHhC-CCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 35899999999999997 3345667899999999999999999887664
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=137.39 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=99.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++... ..++.++++|+.++++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-----------~~~i~~~~~d~~~~~~----- 103 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-----------VPQLRWETMDVRKLDF----- 103 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-----------CTTCEEEECCTTSCCS-----
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-----------CCCcEEEEcchhcCCC-----
Confidence 477899999999999999999887655899999999999999998752 2368999999988766
Q ss_pred CCCCeeEEEecccccccCC-----------CHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHH
Q 017369 162 DDAPFDICSCQFAMHYSWS-----------TEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~-----------~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l 216 (372)
++++||+|++..+++++.. ...+...+++++.++|||||.+++.+++.......+
T Consensus 104 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 169 (215)
T 2pxx_A 104 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRH 169 (215)
T ss_dssp CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHH
T ss_pred CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHH
Confidence 5689999999998877631 246788999999999999999999998876555443
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=141.47 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.|+..++..+...++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++.... +++.+
T Consensus 32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~---------------~v~~~ 95 (261)
T 3iv6_A 32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADR---------------CVTID 95 (261)
T ss_dssp CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSS---------------CCEEE
T ss_pred HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc---------------cceee
Confidence 456667777777889999999999999999988764 48999999999999999988631 12233
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+.+.+.......+++||+|++..++||+ ..++...+++++.++| |||.++++++.
T Consensus 96 ~~~~~~~~~~~~~~~fD~Vv~~~~l~~~--~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 96 LLDITAEIPKELAGHFDFVLNDRLINRF--TTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp ECCTTSCCCGGGTTCCSEEEEESCGGGS--CHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred eeecccccccccCCCccEEEEhhhhHhC--CHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 3322210000024789999999999987 5677889999999999 99999998754
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-16 Score=142.61 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=92.3
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCccc----------------------------
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHH---------------------------- 134 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------------------------- 134 (372)
++.+|||||||+|.++..++.. +..+|+|+|+|+.|++.|++++.......
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 6789999999999999998876 45689999999999999998865321100
Q ss_pred ---------------------ccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccC--CCHHHHHHHHHH
Q 017369 135 ---------------------QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW--STEARARRALAN 191 (372)
Q Consensus 135 ---------------------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~~~~~l~~ 191 (372)
.....+..++.|.++|+............++||+|+|..+++|+. .+.++...+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 000112357999999997544100001468999999999997751 023478899999
Q ss_pred HHHhcCCCcEEEEEeCChH
Q 017369 192 VSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 192 i~~~LkpgG~li~~~~~~~ 210 (372)
++++|+|||+|++......
T Consensus 206 ~~~~LkpGG~lil~~~~~~ 224 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWS 224 (292)
T ss_dssp HHHHEEEEEEEEEECCCHH
T ss_pred HHHHhCCCcEEEEecCCch
Confidence 9999999999999876654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=142.66 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=88.6
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--ccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~ 157 (372)
....++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++.... ..++.++++|+.++ ++
T Consensus 56 ~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~----------~~~v~~~~~d~~~~~~~~- 124 (236)
T 1zx0_A 56 AASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ----------THKVIPLKGLWEDVAPTL- 124 (236)
T ss_dssp HHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC----------SSEEEEEESCHHHHGGGS-
T ss_pred hcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc----------CCCeEEEecCHHHhhccc-
Confidence 345678899999999999999886655558999999999999999987631 24699999999887 66
Q ss_pred cccCCCCCeeEEEe-cccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSC-QFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~-~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++||+|++ .++++...........+++++.++|||||+|++..
T Consensus 125 ----~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 125 ----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ----CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 6789999999 55532111123566788999999999999988654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-16 Score=143.47 Aligned_cols=116 Identities=14% Similarity=0.192 Sum_probs=92.8
Q ss_pred HHHHhCCCCCEEEEecCCccccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 77 LVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 77 l~~~~~~~~~~VLDlGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
+......++.+|||+|||+|..+..++. ....+|+|+|+|+.+++.|+++.... .+...++.++++|+.++
T Consensus 29 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~~~~v~~~~~d~~~~ 101 (299)
T 3g5t_A 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-------PDTYKNVSFKISSSDDF 101 (299)
T ss_dssp HHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC-------C-CCTTEEEEECCTTCC
T ss_pred HHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc-------cCCCCceEEEEcCHHhC
Confidence 3344446889999999999999999986 35668999999999999999987631 12245799999999988
Q ss_pred ccccc-cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 155 HLDKV-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 155 ~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
++... ....++||+|++..++||+ ++..+++++.++|||||.+++
T Consensus 102 ~~~~~~~~~~~~fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 102 KFLGADSVDKQKIDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp GGGCTTTTTSSCEEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CccccccccCCCeeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEE
Confidence 76210 0012799999999999986 467999999999999999887
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-16 Score=133.08 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=89.4
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++... .+. .++.++++|+.+.++
T Consensus 29 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~~~~~~~d~~~~~~---- 94 (199)
T 2xvm_A 29 KVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSI--------ENL-DNLHTRVVDLNNLTF---- 94 (199)
T ss_dssp TTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHH--------HTC-TTEEEEECCGGGCCC----
T ss_pred hccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHh--------CCC-CCcEEEEcchhhCCC----
Confidence 3446789999999999999988876 44899999999999999998753 111 258999999987653
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++||+|++..+++|+ +.++...+++++.++|+|||.+++..
T Consensus 95 --~~~~D~v~~~~~l~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 95 --DRQYDFILSTVVLMFL--EAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp --CCCEEEEEEESCGGGS--CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --CCCceEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 4789999999999987 44578899999999999999977644
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-16 Score=135.17 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=89.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++ +|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++... . ..++.++++|+.+.++
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~--------~--~~~~~~~~~d~~~~~~----- 90 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQE--------K--GVKITTVQSNLADFDI----- 90 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHH--------H--TCCEEEECCBTTTBSC-----
T ss_pred CCCC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHh--------c--CCceEEEEcChhhcCC-----
Confidence 3566 99999999999998887664 4899999999999999998752 1 2268999999988776
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
++++||+|++.+ .|+ ...+...+++++.++|+|||.+++.+++..
T Consensus 91 ~~~~fD~v~~~~--~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 91 VADAWEGIVSIF--CHL--PSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp CTTTCSEEEEEC--CCC--CHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred CcCCccEEEEEh--hcC--CHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 568999999954 333 557889999999999999999999887654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-16 Score=141.57 Aligned_cols=110 Identities=19% Similarity=0.144 Sum_probs=87.4
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.....++.+|||||||+|..+..+++....+|+|||+|+.|++.|+++.... ..++.++.+|+.+....
T Consensus 55 ~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~----------~~~~~~~~~~a~~~~~~- 123 (236)
T 3orh_A 55 AAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ----------THKVIPLKGLWEDVAPT- 123 (236)
T ss_dssp HHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGC----------SSEEEEEESCHHHHGGG-
T ss_pred HhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhC----------CCceEEEeehHHhhccc-
Confidence 3345788999999999999888887766678999999999999999988642 34688899988654311
Q ss_pred ccCCCCCeeEEEe-----cccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSC-----QFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~-----~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ++++||.|++ ..+++|. .+...+++++.++|||||+|++.
T Consensus 124 -~-~~~~FD~i~~D~~~~~~~~~~~----~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 124 -L-PDGHFDGILYDTYPLSEETWHT----HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp -S-CTTCEEEEEECCCCCBGGGTTT----HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred -c-cccCCceEEEeeeecccchhhh----cchhhhhhhhhheeCCCCEEEEE
Confidence 1 5688999975 3344554 78899999999999999998764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=137.08 Aligned_cols=109 Identities=16% Similarity=0.034 Sum_probs=87.4
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHH-HcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWD-KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
....+.++.+|||||||+|..+..++ +...++|+|+|+|++|++.|++++.. .++ .+++++++|+.+++
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~--------~gl-~~v~~v~gDa~~l~- 185 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG--------LGV-DGVNVITGDETVID- 185 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHH--------HTC-CSEEEEESCGGGGG-
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHh--------cCC-CCeEEEECchhhCC-
Confidence 33467899999999999998765443 33566899999999999999999863 344 58999999998753
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+++||+|++.... .+...+++++.++|||||++++...+.
T Consensus 186 ------d~~FDvV~~~a~~-------~d~~~~l~el~r~LkPGG~Lvv~~~~~ 225 (298)
T 3fpf_A 186 ------GLEFDVLMVAALA-------EPKRRVFRNIHRYVDTETRIIYRTYTG 225 (298)
T ss_dssp ------GCCCSEEEECTTC-------SCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred ------CCCcCEEEECCCc-------cCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence 4789999976542 457789999999999999999877544
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=130.03 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEE
Q 017369 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147 (372)
Q Consensus 68 ~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 147 (372)
....+...++. ..+.++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|+++... .++ .++.++
T Consensus 7 ~~~~~~~~~l~-~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~--------~~~-~~v~~~ 75 (185)
T 3mti_A 7 RPIHMSHDFLA-EVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSD--------LGI-ENTELI 75 (185)
T ss_dssp CHHHHHHHHHH-TTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH--------HTC-CCEEEE
T ss_pred hHHHHHHHHHH-HhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEE
Confidence 33445554543 35678899999999999999998876 66899999999999999998863 223 478999
Q ss_pred ECcCcccccccccCCCCCeeEEEecccc-cc----cCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 148 CGDCYEVHLDKVLADDAPFDICSCQFAM-HY----SWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 148 ~~D~~~~~~~~~~~~~~~fD~V~~~~~l-~~----~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.|+..++.. .+++||+|+++... ++ +.....+...+++++.++|||||.+++.+.
T Consensus 76 ~~~~~~l~~~----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 76 LDGHENLDHY----VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ESCGGGGGGT----CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eCcHHHHHhh----ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9877664311 35789999887422 11 111346677899999999999999988764
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=139.88 Aligned_cols=112 Identities=12% Similarity=0.052 Sum_probs=91.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.++.+|||+|||+|.++..++.... +|+|+|+|+.|++.|+++.. ..++.++++|+.+++......
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~~~~~~ 120 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT------------AANISYRLLDGLVPEQAAQIH 120 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC------------CTTEEEEECCTTCHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc------------ccCceEEECcccccccccccc
Confidence 46788999999999999999987665 89999999999999999874 236999999998866421110
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
....||+|++..++||+ +..+...+++++.++|||||++++..+.
T Consensus 121 ~~~~~d~v~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 121 SEIGDANIYMRTGFHHI--PVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp HHHCSCEEEEESSSTTS--CGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cccCccEEEEcchhhcC--CHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 11359999999999997 4457889999999999999997766543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=135.08 Aligned_cols=109 Identities=20% Similarity=0.171 Sum_probs=87.7
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
.+.++||.+|||+|||+|.++..+++. ..++|+|+|+|+.|++.++++... ..++..+.+|+.....
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-----------~~ni~~V~~d~~~p~~ 140 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----------RRNIFPILGDARFPEK 140 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-----------CTTEEEEESCTTCGGG
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-----------hcCeeEEEEeccCccc
Confidence 456889999999999999999999874 567999999999999999988763 3478889998876432
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.. ...+.+|+|++....+ .+...++.++.+.|||||.+++.+
T Consensus 141 ~~--~~~~~vDvVf~d~~~~------~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 141 YR--HLVEGVDGLYADVAQP------EQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp GT--TTCCCEEEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc--cccceEEEEEEeccCC------hhHHHHHHHHHHhccCCCEEEEEE
Confidence 11 1457899998754433 467789999999999999998875
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=129.17 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=92.0
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|++++.. .++ .+++++++|+.+.... . +
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~~--~-~ 110 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEA--------LGL-SGATLRRGAVAAVVAA--G-T 110 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHH--------HTC-SCEEEEESCHHHHHHH--C-C
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH--------cCC-CceEEEEccHHHHHhh--c-c
Confidence 57889999999999999988777777899999999999999998863 222 4799999999875421 0 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHH--hcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~li~~~~~~ 209 (372)
+++||+|++...+++. .++...++..+.+ +|+|||.+++..+..
T Consensus 111 ~~~fD~i~~~~p~~~~---~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 111 TSPVDLVLADPPYNVD---SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp SSCCSEEEECCCTTSC---HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCccEEEECCCCCcc---hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 5789999998886652 4678899999999 999999999987554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=130.08 Aligned_cols=126 Identities=19% Similarity=0.279 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (372)
...+...+ ....+.++.+|||+|||+|.++..++.. +.++|+|+|+|+.+++.|++++.. .++..++.+
T Consensus 8 ~~~~~~~~-~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~v~~ 78 (197)
T 3eey_A 8 SLGQSHDY-IKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD--------LNLIDRVTL 78 (197)
T ss_dssp HHHHHHHH-HHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHH--------TTCGGGEEE
T ss_pred HHHHHHHH-HHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCCeEE
Confidence 33333333 3446678899999999999999988875 446899999999999999999864 233457999
Q ss_pred EECcCcccccccccCCCCCeeEEEecccc-----cccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+++|+.+++.. .+++||+|++...+ +.......+...+++++.++|||||++++...
T Consensus 79 ~~~d~~~~~~~----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 79 IKDGHQNMDKY----IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp ECSCGGGGGGT----CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCHHHHhhh----ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 99999776521 45789999998755 22233455677899999999999999988763
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-15 Score=124.81 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+...++..+...++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++... .++..++ ++++|
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~~-~~~~d 83 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAIN--------LGVSDRI-AVQQG 83 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHT--------TTCTTSE-EEECC
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHH--------hCCCCCE-EEecc
Confidence 44455556667788999999999999999887763 45799999999999999998864 2334467 88888
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
+.+ .+.. ..++||+|++..++++ ..+++++.++|+|||++++..+...
T Consensus 84 ~~~-~~~~---~~~~~D~i~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~ 131 (178)
T 3hm2_A 84 APR-AFDD---VPDNPDVIFIGGGLTA--------PGVFAAAWKRLPVGGRLVANAVTVE 131 (178)
T ss_dssp TTG-GGGG---CCSCCSEEEECC-TTC--------TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred hHh-hhhc---cCCCCCEEEECCcccH--------HHHHHHHHHhcCCCCEEEEEeeccc
Confidence 754 3310 2278999999998876 4789999999999999999887653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=125.51 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=91.6
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++..+.+.++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++... .++..++.++++|+.+..
T Consensus 47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~--------~g~~~~v~~~~~d~~~~~ 117 (204)
T 3njr_A 47 TLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDT--------YGLSPRMRAVQGTAPAAL 117 (204)
T ss_dssp HHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEESCTTGGG
T ss_pred HHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--------cCCCCCEEEEeCchhhhc
Confidence 444556778899999999999999998877 66899999999999999998763 233447999999998732
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
. ....||+|++..++ +.. +++++.++|||||++++.++..+..
T Consensus 118 ~-----~~~~~D~v~~~~~~--------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~ 160 (204)
T 3njr_A 118 A-----DLPLPEAVFIGGGG--------SQA-LYDRLWEWLAPGTRIVANAVTLESE 160 (204)
T ss_dssp T-----TSCCCSEEEECSCC--------CHH-HHHHHHHHSCTTCEEEEEECSHHHH
T ss_pred c-----cCCCCCEEEECCcc--------cHH-HHHHHHHhcCCCcEEEEEecCcccH
Confidence 2 23579999987644 234 9999999999999999998876543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=137.91 Aligned_cols=107 Identities=12% Similarity=0.011 Sum_probs=90.0
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--ccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~ 159 (372)
.+..+|||||||+|..+..+++.. ..+++++|+ +.+++.|+++... .++..++.++.+|+.+. ++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~~--- 245 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAG--------LSGSERIHGHGANLLDRDVPF--- 245 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTT--------CTTGGGEEEEECCCCSSSCCC---
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHh--------cCcccceEEEEccccccCCCC---
Confidence 467899999999999999988753 447999999 9999999999864 33345799999999875 34
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+ ++||+|++..++|++ +.++...+|++++++|||||++++..
T Consensus 246 --p-~~~D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 246 --P-TGFDAVWMSQFLDCF--SEEEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp --C-CCCSEEEEESCSTTS--CHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred --C-CCcCEEEEechhhhC--CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 689999999999986 55677899999999999999988754
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-15 Score=148.24 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (372)
...++..++..+...++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.|++++..... ....+ ..++.+
T Consensus 706 ~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~ln--Akr~g-l~nVef 782 (950)
T 3htx_A 706 SKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLN--KEACN-VKSATL 782 (950)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTT--TTCSS-CSEEEE
T ss_pred HHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccc--hhhcC-CCceEE
Confidence 334555555555556889999999999999998877652 5899999999999999987642100 00011 237999
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
+++|+.++++ .+++||+|++..+++|+ .......+++++.++|||| .+++++|+.+
T Consensus 783 iqGDa~dLp~-----~d~sFDlVV~~eVLeHL--~dp~l~~~L~eI~RvLKPG-~LIISTPN~e 838 (950)
T 3htx_A 783 YDGSILEFDS-----RLHDVDIGTCLEVIEHM--EEDQACEFGEKVLSLFHPK-LLIVSTPNYE 838 (950)
T ss_dssp EESCTTSCCT-----TSCSCCEEEEESCGGGS--CHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred EECchHhCCc-----ccCCeeEEEEeCchhhC--ChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence 9999998887 67899999999999998 4456668999999999999 9999999874
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=125.15 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCc-CeEEEEC
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICG 149 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~ 149 (372)
...+.++..+...++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|+++.... ++.. ++.++++
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~ 109 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLN--------NLDNYDIRVVHS 109 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHT--------TCTTSCEEEEEC
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHc--------CCCccceEEEEC
Confidence 34555555556668899999999999999988877 668999999999999999987631 2222 3899999
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
|+.+. + ++++||+|++...+++ .......+++++.++|+|||.+++.++...
T Consensus 110 d~~~~-~-----~~~~~D~v~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 110 DLYEN-V-----KDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp STTTT-C-----TTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred chhcc-c-----ccCCceEEEECCCccc---chhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 98763 2 4578999999888775 246788999999999999999999987753
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=136.73 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=90.0
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++... .+ .++.++++|+.+.+.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~--------~~--~~~~~~~~d~~~~~~------ 181 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEK--------EN--LNISTALYDINAANI------ 181 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH--------TT--CCEEEEECCGGGCCC------
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHH--------cC--CceEEEEeccccccc------
Confidence 4788999999999999999887754 899999999999999998863 22 279999999987653
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++||+|++..+++|+ +.+....+++++.++|+|||.+++..
T Consensus 182 ~~~fD~i~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 182 QENYDFIVSTVVFMFL--NRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CSCEEEEEECSSGGGS--CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCccEEEEccchhhC--CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5789999999999987 55677899999999999999977654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=127.41 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=84.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++... .+.. ++.++++|+.+.
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~-~v~~~~~d~~~~------- 121 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAAL--------NGIY-DIALQKTSLLAD------- 121 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTCC-CCEEEESSTTTT-------
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-ceEEEecccccc-------
Confidence 567899999999999999988876666899999999999999998763 2222 389999998753
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+++||+|++...+++ ...+++++.++|+|||++++..
T Consensus 122 ~~~~fD~i~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 122 VDGKFDLIVANILAEI-------LLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp CCSCEEEEEEESCHHH-------HHHHGGGSGGGEEEEEEEEEEE
T ss_pred CCCCceEEEECCcHHH-------HHHHHHHHHHhcCCCCEEEEEe
Confidence 3478999999877754 4688999999999999998764
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=134.94 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=94.0
Q ss_pred HHHHHHhC--CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 75 SVLVQLYA--RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 75 ~~l~~~~~--~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.++..... .++.+|||+|||+|..+..++... ..+++|+|+| .+++.|+++... .++..++.++++|+
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~--------~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARI--------QGVASRYHTIAGSA 224 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHH--------HTCGGGEEEEESCT
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHh--------cCCCcceEEEeccc
Confidence 34444444 678899999999999999888763 4589999999 999999998753 23345699999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.+.++ + ..||+|++..++||+ +.++...+++++.++|+|||++++..+
T Consensus 225 ~~~~~-----~-~~~D~v~~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 225 FEVDY-----G-NDYDLVLLPNFLHHF--DVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp TTSCC-----C-SCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCC-----C-CCCcEEEEcchhccC--CHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 87654 3 349999999999987 566788999999999999998887654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=129.10 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=89.6
Q ss_pred HHHhCCCCCEEEEecCC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-c
Q 017369 78 VQLYARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~ 155 (372)
......++.+|||+||| +|.++..++.....+|+|+|+|+.+++.|+++... .+. ++.++++|+..+ +
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~--~v~~~~~d~~~~~~ 118 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIER--------NNS--NVRLVKSNGGIIKG 118 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHH--------TTC--CCEEEECSSCSSTT
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH--------hCC--CcEEEeCCchhhhh
Confidence 45556789999999999 99999988776456899999999999999998863 222 789999997533 2
Q ss_pred cccccCCCCCeeEEEecccccccCC---------------CHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWS---------------TEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~---------------~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+ ++++||+|+++..+++... .......+++++.++|||||++++.++..
T Consensus 119 ~-----~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 182 (230)
T 3evz_A 119 V-----VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK 182 (230)
T ss_dssp T-----CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred c-----ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 2 4578999999866543210 11224789999999999999999877654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=131.55 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=72.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..+ ...|+|+|+|+. ++.++++|+.++++
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~------------------------~~~~~~~d~~~~~~----- 111 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSI----RNPVHCFDLASL------------------------DPRVTVCDMAQVPL----- 111 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS------------------------STTEEESCTTSCSC-----
T ss_pred cCCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC------------------------CceEEEeccccCCC-----
Confidence 357789999999999887766 258999999985 15578899988776
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++||+|++..++|+ .+...+++++.++|+|||.+++..
T Consensus 112 ~~~~fD~v~~~~~l~~-----~~~~~~l~~~~~~L~~gG~l~i~~ 151 (215)
T 2zfu_A 112 EDESVDVAVFCLSLMG-----TNIRDFLEEANRVLKPGGLLKVAE 151 (215)
T ss_dssp CTTCEEEEEEESCCCS-----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEeEEEEehhccc-----cCHHHHHHHHHHhCCCCeEEEEEE
Confidence 6789999999999974 357799999999999999998875
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-14 Score=132.93 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=92.2
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
.++......++.+|||+|||+|..+..++... ..+++++|+ +.+++.|++++.. .++..++.++.+|+.+
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~ 251 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE--------KGVADRMRGIAVDIYK 251 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH--------TTCTTTEEEEECCTTT
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHh--------cCCCCCEEEEeCcccc
Confidence 34444445678899999999999999988764 448999999 9999999998763 2334569999999987
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++ + .+|+|++..++|++ +.++...+|+++.++|+|||++++..
T Consensus 252 ~~~-----~--~~D~v~~~~vlh~~--~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 252 ESY-----P--EADAVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp SCC-----C--CCSEEEEESCGGGS--CHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CCC-----C--CCCEEEEechhccC--CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 665 3 24999999999987 44668999999999999999987654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-14 Score=134.78 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=89.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...+..+|||+|||+|..+..++... ..+++++|+ +.+++.|++++.. .++..++++..+|+. .++
T Consensus 199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~~l~~~v~~~~~d~~-~~~--- 265 (369)
T 3gwz_A 199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTG--------RGLADRCEILPGDFF-ETI--- 265 (369)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH--------TTCTTTEEEEECCTT-TCC---
T ss_pred CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhh--------cCcCCceEEeccCCC-CCC---
Confidence 44577899999999999999988763 447999999 9999999998763 344567999999998 344
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+. .||+|++..++|++ +.+....+|++++++|+|||++++..
T Consensus 266 --p~-~~D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 266 --PD-GADVYLIKHVLHDW--DDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp --CS-SCSEEEEESCGGGS--CHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred --CC-CceEEEhhhhhccC--CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 33 89999999999987 55666789999999999999988754
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-14 Score=132.75 Aligned_cols=107 Identities=18% Similarity=0.144 Sum_probs=89.0
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.+..+|||+|||+|..+..++... ..+++++|+ +.+++.|+++... .++..++++..+|+. .++
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~-~~~----- 232 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLD--------TGLSGRAQVVVGSFF-DPL----- 232 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH--------TTCTTTEEEEECCTT-SCC-----
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhh--------cCcCcCeEEecCCCC-CCC-----
Confidence 346899999999999999888753 447999999 9999999998763 334567999999997 344
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+. .||+|++..++||+ +.++..++|++++++|+|||++++..+
T Consensus 233 p~-~~D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 233 PA-GAGGYVLSAVLHDW--DDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp CC-SCSEEEEESCGGGS--CHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CC-CCcEEEEehhhccC--CHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 33 89999999999987 555678999999999999999987654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-14 Score=134.60 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=92.8
Q ss_pred HHHHHhCCC-CCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 76 VLVQLYARR-GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 76 ~l~~~~~~~-~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
++......+ +.+|||+|||+|.++..++... ..+++++|+ +.+++.|+++... .++..++.++.+|+.+
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~ 240 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHA--------HDLGGRVEFFEKNLLD 240 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH--------TTCGGGEEEEECCTTC
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHh--------cCCCCceEEEeCCccc
Confidence 444444455 7899999999999999988753 458999999 8899999988763 3344579999999987
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.. .++.||+|++..++||+ +.++...+|++++++|+|||++++..
T Consensus 241 ~~~~----~~~~~D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 241 ARNF----EGGAADVVMLNDCLHYF--DAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp GGGG----TTCCEEEEEEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred Cccc----CCCCccEEEEecccccC--CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 6510 23569999999999987 55678999999999999999988754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=128.78 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=89.3
Q ss_pred CC-CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 AR-RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~-~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.. ++.+|||+|||+|.++..++.....+|+|+|+++.+++.|++++.. .++..++.++++|+.+... .+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~--------~~~~~~v~~~~~D~~~~~~--~~ 115 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAY--------NQLEDQIEIIEYDLKKITD--LI 115 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHH--------TTCTTTEEEECSCGGGGGG--TS
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH--------CCCcccEEEEECcHHHhhh--hh
Confidence 44 7899999999999999988877666999999999999999998864 3445579999999987652 01
Q ss_pred CCCCCeeEEEeccccccc----------------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 161 ADDAPFDICSCQFAMHYS----------------WSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~----------------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+.++||+|+++..++.. +........+++.+.++|||||++++..+.
T Consensus 116 -~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 116 -PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp -CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred -ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 46899999997543221 011245678999999999999999987653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=137.05 Aligned_cols=118 Identities=22% Similarity=0.220 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.|.+.+.......++.+|||+|||+|.++..+++.+..+|+|+|+|+ |++.|+++... .++..++.++++|
T Consensus 51 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~--------~~~~~~i~~~~~d 121 (340)
T 2fyt_A 51 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRL--------NKLEDTITLIKGK 121 (340)
T ss_dssp HHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHH--------TTCTTTEEEEESC
T ss_pred HHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHH--------cCCCCcEEEEEee
Confidence 34455555555678899999999999999988877666899999997 99999998763 3444679999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+.++++ ++++||+|++....+.+ .....+..++.++.++|||||.++
T Consensus 122 ~~~~~~-----~~~~~D~Ivs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 122 IEEVHL-----PVEKVDVIISEWMGYFL-LFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTTSCC-----SCSCEEEEEECCCBTTB-TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHhcC-----CCCcEEEEEEcCchhhc-cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 998776 56899999987632221 123567889999999999999987
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-14 Score=123.13 Aligned_cols=114 Identities=13% Similarity=-0.003 Sum_probs=92.3
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++..+...++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++... .++ .++.++++|+.+.
T Consensus 32 ~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~v~~~~~d~~~~ 102 (204)
T 3e05_A 32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKK--------FVA-RNVTLVEAFAPEG 102 (204)
T ss_dssp HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHH--------HTC-TTEEEEECCTTTT
T ss_pred HHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCC-CcEEEEeCChhhh
Confidence 4445567789999999999999999988764 46899999999999999998763 222 4699999998654
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
.. ..+.||+|++..+++ +...+++++.++|+|||.+++..+...
T Consensus 103 ~~-----~~~~~D~i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 146 (204)
T 3e05_A 103 LD-----DLPDPDRVFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLD 146 (204)
T ss_dssp CT-----TSCCCSEEEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECBHH
T ss_pred hh-----cCCCCCEEEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecccc
Confidence 32 336799999988765 356899999999999999999887643
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-14 Score=135.04 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=92.1
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
.++......++.+|||+|||+|..+..++... ..+++++|+ +.+++.|+++... .++..++.++++|+.+
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~ 243 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD--------AGLADRVTVAEGDFFK 243 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH--------TTCTTTEEEEECCTTS
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHh--------cCCCCceEEEeCCCCC
Confidence 34444445678899999999999999988764 458999999 9999999998763 3344579999999875
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
++ + ..||+|++..++||+ +..+...+++++.++|+|||++++..+
T Consensus 244 -~~-----~-~~~D~v~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 244 -PL-----P-VTADVVLLSFVLLNW--SDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp -CC-----S-CCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -cC-----C-CCCCEEEEeccccCC--CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 33 2 349999999999986 445567999999999999999887655
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-15 Score=130.31 Aligned_cols=93 Identities=17% Similarity=0.289 Sum_probs=78.0
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc-ccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~ 159 (372)
...++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|+++.. ++.++++|+. .+++
T Consensus 45 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~~--- 106 (226)
T 3m33_A 45 LLTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANAP--------------HADVYEWNGKGELPA--- 106 (226)
T ss_dssp HCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCSCSSCCT---
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCC--------------CceEEEcchhhccCC---
Confidence 3467899999999999999988876 4589999999999999998843 5899999994 4554
Q ss_pred cCC-CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 160 LAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 160 ~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+ +++||+|++.. +...+++++.++|||||.++
T Consensus 107 --~~~~~fD~v~~~~----------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 107 --GLGAPFGLIVSRR----------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp --TCCCCEEEEEEES----------CCSGGGGGHHHHEEEEEEEE
T ss_pred --cCCCCEEEEEeCC----------CHHHHHHHHHHHcCCCcEEE
Confidence 4 68999999872 23478899999999999997
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=124.11 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=88.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-cccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~ 160 (372)
..++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++++.. .++..++.++++|+.+. +.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~~---- 96 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIM--------TKAENRFTLLKMEAERAIDC---- 96 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHT--------TTCGGGEEEECSCHHHHHHH----
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCceEEEECcHHHhHHh----
Confidence 457789999999999999998877666899999999999999999864 23344699999998763 32
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHH--HhcCCCcEEEEEeCChH
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~li~~~~~~~ 210 (372)
..+.||+|++...++. .....+++.+. ++|+|||.+++.++...
T Consensus 97 -~~~~fD~i~~~~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 97 -LTGRFDLVFLDPPYAK-----ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp -BCSCEEEEEECCSSHH-----HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred -hcCCCCEEEECCCCCc-----chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 2467999999866532 34566777776 99999999999886553
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=130.01 Aligned_cols=125 Identities=14% Similarity=0.038 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHh-CCCCCEEEEecCCc---cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 70 NNWIKSVLVQLY-ARRGDVVLDLACGK---GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 70 ~~~~k~~l~~~~-~~~~~~VLDlGcG~---G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
..|+..++..+. ..+..+|||||||+ |..+..+... ...+|+|+|+|+.|++.|++++.. ..++
T Consensus 62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----------~~~v 130 (274)
T 2qe6_A 62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----------DPNT 130 (274)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----------CTTE
T ss_pred hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----------CCCe
Confidence 345555554444 23457999999999 9776555443 346899999999999999998752 2369
Q ss_pred EEEECcCcccccc-------cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 145 RLICGDCYEVHLD-------KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 145 ~~~~~D~~~~~~~-------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.++++|+.+.... ..+ +..+||+|++..++||+.+ ++...+|+++.++|+|||+|+++...
T Consensus 131 ~~~~~D~~~~~~~~~~~~~~~~~-d~~~~d~v~~~~vlh~~~d--~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 131 AVFTADVRDPEYILNHPDVRRMI-DFSRPAAIMLVGMLHYLSP--DVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp EEEECCTTCHHHHHHSHHHHHHC-CTTSCCEEEETTTGGGSCT--TTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred EEEEeeCCCchhhhccchhhccC-CCCCCEEEEEechhhhCCc--HHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 9999999764210 111 3358999999999999832 25889999999999999999987654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=125.64 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=90.9
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+...++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|++++... ++. ++.++++|+.
T Consensus 66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~--------~~~-~v~~~~~d~~ 135 (210)
T 3lbf_A 66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNL--------DLH-NVSTRHGDGW 135 (210)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHT--------TCC-SEEEEESCGG
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHc--------CCC-ceEEEECCcc
Confidence 334445556778999999999999999988877 568999999999999999988632 222 6999999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+... ..++||+|++..+++++. .++.++|||||++++.+++
T Consensus 136 ~~~~-----~~~~~D~i~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 136 QGWQ-----ARAPFDAIIVTAAPPEIP----------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCG-----GGCCEEEEEESSBCSSCC----------THHHHTEEEEEEEEEEECS
T ss_pred cCCc-----cCCCccEEEEccchhhhh----------HHHHHhcccCcEEEEEEcC
Confidence 7554 457899999999999873 2578999999999999877
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-15 Score=142.32 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.|...++......++.+|||+|||+|.++..++..+..+|+|+|+| .|++.|+++... .++..++.++++|
T Consensus 50 ~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~--------~~~~~~v~~~~~d 120 (376)
T 3r0q_C 50 AYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKA--------NNLDHIVEVIEGS 120 (376)
T ss_dssp HHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHH--------TTCTTTEEEEESC
T ss_pred HHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHH--------cCCCCeEEEEECc
Confidence 4444454445567889999999999999999988777799999999 999999998864 3445679999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.++++ + ++||+|++....+++ ..+..+..++..+.++|||||.+++.
T Consensus 121 ~~~~~~-----~-~~~D~Iv~~~~~~~l-~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 121 VEDISL-----P-EKVDVIISEWMGYFL-LRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp GGGCCC-----S-SCEEEEEECCCBTTB-TTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hhhcCc-----C-CcceEEEEcChhhcc-cchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 988775 3 789999996654443 33345788999999999999999753
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-14 Score=124.53 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=84.1
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.+..+...++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.+.+...... ...+ ..++.++++|+.++
T Consensus 19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~----~~~~-~~~v~~~~~d~~~l 93 (218)
T 3mq2_A 19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP----AKGG-LPNLLYLWATAERL 93 (218)
T ss_dssp HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCG----GGTC-CTTEEEEECCSTTC
T ss_pred HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhh----hhcC-CCceEEEecchhhC
Confidence 4455556788999999999999999998764 4579999999999996544433210 0012 23799999999988
Q ss_pred ccccccCCCCCeeEEEecc---ccc--ccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 155 HLDKVLADDAPFDICSCQF---AMH--YSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~---~l~--~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
++ +++. |.|.+.+ .++ |+ .+...+++++.++|||||.+++++.
T Consensus 94 ~~-----~~~~-d~v~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 94 PP-----LSGV-GELHVLMPWGSLLRGVL----GSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp CS-----CCCE-EEEEEESCCHHHHHHHH----TSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred CC-----CCCC-CEEEEEccchhhhhhhh----ccHHHHHHHHHHHcCCCcEEEEEec
Confidence 76 4455 7666333 221 22 2337899999999999999998653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.5e-15 Score=138.17 Aligned_cols=110 Identities=21% Similarity=0.173 Sum_probs=89.8
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
....++.+|||+|||+|.++..++..+..+|+|+|+|+ |++.|+++... .++..++.++++|+.++++
T Consensus 62 ~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~--- 129 (349)
T 3q7e_A 62 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKA--------NKLDHVVTIIKGKVEEVEL--- 129 (349)
T ss_dssp HHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHH--------TTCTTTEEEEESCTTTCCC---
T ss_pred cccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHH--------cCCCCcEEEEECcHHHccC---
Confidence 34457899999999999999999888777999999995 99999998864 3445569999999998876
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
++++||+|++....+++ ........++..+.++|||||+++.
T Consensus 130 --~~~~fD~Iis~~~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 130 --PVEKVDIIISEWMGYCL-FYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp --SSSCEEEEEECCCBBTB-TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred --CCCceEEEEEccccccc-cCchhHHHHHHHHHHhCCCCCEEcc
Confidence 66899999997654332 1235678899999999999999873
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=123.88 Aligned_cols=115 Identities=15% Similarity=0.182 Sum_probs=89.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--ccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~ 158 (372)
..++.+|||+|||+|.++..++... ...++|+|+|+.+++.|+++... .++ .++.++++|+.+++ +
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~~~-- 107 (214)
T 1yzh_A 39 GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE--------VGV-PNIKLLWVDGSDLTDYF-- 107 (214)
T ss_dssp TSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------HCC-SSEEEEECCSSCGGGTS--
T ss_pred CCCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHH--------cCC-CCEEEEeCCHHHHHhhc--
Confidence 3568899999999999999888764 45899999999999999998763 222 47999999998755 3
Q ss_pred ccCCCCCeeEEEecccccccCCCH----HHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~----~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
++++||+|++++...+.-... .....+++++.++|+|||.+++.+.+..
T Consensus 108 ---~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (214)
T 1yzh_A 108 ---EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG 160 (214)
T ss_dssp ---CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred ---CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence 567899999987654320000 0125799999999999999999987654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=128.75 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=82.3
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc----cc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE----VH 155 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~ 155 (372)
.+.++.+|||+|||+|..+..++.. +.++|+|+|+|+.|++.|+++... ..++.++++|+.+ .+
T Consensus 71 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~v~~~~~d~~~~~~~~~ 139 (230)
T 1fbn_A 71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----------RENIIPILGDANKPQEYAN 139 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----------CTTEEEEECCTTCGGGGTT
T ss_pred CCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----------CCCeEEEECCCCCcccccc
Confidence 4567899999999999999988876 446899999999999999998753 1479999999987 44
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+ . ++||+|++ ++ ........+++++.++|||||.+++.+
T Consensus 140 ~-----~-~~~D~v~~-----~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 140 I-----V-EKVDVIYE-----DV-AQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp T-----S-CCEEEEEE-----CC-CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-----C-ccEEEEEE-----ec-CChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence 3 3 68999983 22 222345778999999999999998763
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-14 Score=131.64 Aligned_cols=115 Identities=21% Similarity=0.251 Sum_probs=92.0
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++......++.+|||+|||+|..+..++... ...++++|+ +.+++.|++++.. .++..++.++++|+.+
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~- 244 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKD--------EGLSDRVDVVEGDFFE- 244 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHH--------TTCTTTEEEEECCTTS-
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHh--------cCCCCceEEEeCCCCC-
Confidence 3444445678899999999999999888764 347999999 9999999998763 2344579999999875
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++ + ..||+|++..++|++ +..+...+++++.++|+|||++++..+.
T Consensus 245 ~~-----~-~~~D~v~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 245 PL-----P-RKADAIILSFVLLNW--PDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CC-----S-SCEEEEEEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CC-----C-CCccEEEEcccccCC--CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 33 2 349999999999986 4556679999999999999998877544
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=127.75 Aligned_cols=115 Identities=20% Similarity=0.331 Sum_probs=89.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-c--cc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H--LD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~--~~ 157 (372)
..++.+|||||||+|..+..++... ...|+|+|+|+.|++.|+++.... + ..++.++++|+.++ + +
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~--------~-l~nv~~~~~Da~~~l~~~~- 101 (218)
T 3dxy_A 32 GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE--------G-LSNLRVMCHDAVEVLHKMI- 101 (218)
T ss_dssp SSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT--------T-CSSEEEECSCHHHHHHHHS-
T ss_pred CCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh--------C-CCcEEEEECCHHHHHHHHc-
Confidence 4577899999999999999988754 457999999999999999987631 2 23699999998774 2 3
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHH------HHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARA------RRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~------~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
++++||.|++.+...|. ..... ..+++++.++|||||.|++.+.+....
T Consensus 102 ----~~~~~d~v~~~~~~p~~--~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~ 156 (218)
T 3dxy_A 102 ----PDNSLRMVQLFFPDPWH--KARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYA 156 (218)
T ss_dssp ----CTTCEEEEEEESCCCCC--SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHH
T ss_pred ----CCCChheEEEeCCCCcc--chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHH
Confidence 57899999998665542 11111 259999999999999999999776543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=136.31 Aligned_cols=129 Identities=13% Similarity=0.098 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEE
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARL 146 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~ 146 (372)
....+..++..+.+.++.+|||||||+|..+..++.. +..+++|||+|+.+++.|++........ .+..++ ..++.|
T Consensus 158 ~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr-~~~~Gl~~~rVef 236 (438)
T 3uwp_A 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKW-MKWYGKKHAEYTL 236 (438)
T ss_dssp HHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHH-HHHHTBCCCEEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHH-HHHhCCCCCCeEE
Confidence 3455677777778889999999999999999988764 4446999999999999998754210000 000122 247999
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++|+.++++...+ ..||+|+++..++. .+....|.++.++|||||+|+++-
T Consensus 237 i~GD~~~lp~~d~~---~~aDVVf~Nn~~F~-----pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 237 ERGDFLSEEWRERI---ANTSVIFVNNFAFG-----PEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp EECCTTSHHHHHHH---HTCSEEEECCTTCC-----HHHHHHHHHHHTTSCTTCEEEESS
T ss_pred EECcccCCcccccc---CCccEEEEcccccC-----chHHHHHHHHHHcCCCCcEEEEee
Confidence 99999988762111 47999999876532 678889999999999999998753
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=126.71 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=86.2
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|.++..++..+...|+|+|+|+.|++.|++++.. .++. .++.++++|+.+.... . .
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~v~~~~~d~~~~~~~--~-~ 121 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQT--------LKCSSEQAEVINQSSLDFLKQ--P-Q 121 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHH--------TTCCTTTEEEECSCHHHHTTS--C-C
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHH--------hCCCccceEEEECCHHHHHHh--h-c
Confidence 6789999999999999987777667899999999999999998863 2222 4799999998764320 0 2
Q ss_pred CCC-eeEEEecccccccCCCHHHHHHHHHHH--HHhcCCCcEEEEEeCCh
Q 017369 163 DAP-FDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~-fD~V~~~~~l~~~~~~~~~~~~~l~~i--~~~LkpgG~li~~~~~~ 209 (372)
+++ ||+|++...++ . .....+++.+ .++|+|||.+++++...
T Consensus 122 ~~~~fD~I~~~~~~~-~----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 122 NQPHFDVVFLDPPFH-F----NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp SSCCEEEEEECCCSS-S----CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred cCCCCCEEEECCCCC-C----ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 468 99999987754 2 3566788888 66899999999887554
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-14 Score=124.06 Aligned_cols=116 Identities=13% Similarity=0.179 Sum_probs=88.2
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||||||+|.++..++... ...|+|+|+|+.+++.|+++... .++ .++.++++|+.+++ ..+
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~--------~~~-~nv~~~~~d~~~l~--~~~- 104 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD--------SEA-QNVKLLNIDADTLT--DVF- 104 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--------SCC-SSEEEECCCGGGHH--HHC-
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH--------cCC-CCEEEEeCCHHHHH--hhc-
Confidence 567899999999999999988753 45899999999999999998763 122 36999999998754 111
Q ss_pred CCCCeeEEEecccccccCCC----HHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 162 DDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
++++||.|++.+...|.-.. .-....+++++.++|||||.+++.+.+..
T Consensus 105 ~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~ 157 (213)
T 2fca_A 105 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG 157 (213)
T ss_dssp CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH
T ss_pred CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 56789999887654432000 00035789999999999999999987754
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=135.04 Aligned_cols=107 Identities=21% Similarity=0.137 Sum_probs=88.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...+ .+|||+|||+|..+..++... ..+++++|+ +.+++.|+++... .++..++.++.+|+.+ ++
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~-~~--- 230 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSS--------LLAGERVSLVGGDMLQ-EV--- 230 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHH--------HHHTTSEEEEESCTTT-CC---
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhh--------cCCCCcEEEecCCCCC-CC---
Confidence 3445 899999999999999988753 458999999 9999999988752 2234479999999976 44
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+ +.||+|++..++|++ +.+....+++++.++|+|||++++..
T Consensus 231 --~-~~~D~v~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 231 --P-SNGDIYLLSRIIGDL--DEAASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp --C-SSCSEEEEESCGGGC--CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred --C-CCCCEEEEchhccCC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 679999999999986 55667799999999999999988764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=128.32 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=79.1
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCC-hHHHHHH---HHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIA-EGSIEDC---RTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s-~~~l~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
......++.+|||||||+|..+..++.. ....|+|+|+| +.|++.| +++... .+ ..++.+.++|+.
T Consensus 18 ~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~--------~~-~~~v~~~~~d~~ 88 (225)
T 3p2e_A 18 TEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK--------GG-LSNVVFVIAAAE 88 (225)
T ss_dssp HHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG--------TC-CSSEEEECCBTT
T ss_pred HHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH--------cC-CCCeEEEEcCHH
Confidence 3444578899999999999999988754 44579999999 7777776 554432 12 236999999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++.. ..+.+|.|.+++....... ...+...+|++++++|||||.+++.+
T Consensus 89 ~l~~~----~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 89 SLPFE----LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp BCCGG----GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred Hhhhh----ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 87531 1256676666543221100 00112468999999999999998843
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-14 Score=119.24 Aligned_cols=115 Identities=21% Similarity=0.238 Sum_probs=92.0
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++......++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|++++.. .+...++.++++|+.+ .
T Consensus 25 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~-~ 94 (192)
T 1l3i_A 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQR--------HGLGDNVTLMEGDAPE-A 94 (192)
T ss_dssp HHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHH--------TTCCTTEEEEESCHHH-H
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHH--------cCCCcceEEEecCHHH-h
Confidence 3444566788999999999999999887766 7899999999999999998763 2233478999999876 3
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
+. ..+.||+|++...+++ ...+++++.++|+|||.+++..++...
T Consensus 95 ~~----~~~~~D~v~~~~~~~~-------~~~~l~~~~~~l~~gG~l~~~~~~~~~ 139 (192)
T 1l3i_A 95 LC----KIPDIDIAVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLET 139 (192)
T ss_dssp HT----TSCCEEEEEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred cc----cCCCCCEEEECCchHH-------HHHHHHHHHHhcCCCcEEEEEecCcch
Confidence 31 2258999999887654 468999999999999999998877644
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=125.12 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=80.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.+.++.+|||+|||+|..+..++... .++|+|+|+|+.|++.+.+.... ..++.++++|+........
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-----------~~~v~~~~~d~~~~~~~~~ 122 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----------RNNIIPLLFDASKPWKYSG 122 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----------CSSEEEECSCTTCGGGTTT
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-----------CCCeEEEEcCCCCchhhcc
Confidence 45688999999999999888887643 46899999999988776665542 1258888999876311000
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..++||+|++... + ..+...+++++.++|||||.|++.++
T Consensus 123 --~~~~fD~V~~~~~-~-----~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 123 --IVEKVDLIYQDIA-Q-----KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp --TCCCEEEEEECCC-S-----TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --cccceeEEEEecc-C-----hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 2378999998732 1 13455679999999999999998864
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=126.67 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=82.1
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|..+..++.. ...+|+|+|+|+.|++.|+++... .++. ++.++++|+.++++...
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~-~v~~~~~d~~~~~~~~~-- 137 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA--------LQLE-NTTFCHDRAETFGQRKD-- 137 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------HTCS-SEEEEESCHHHHTTCTT--
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-CEEEEeccHHHhccccc--
Confidence 46789999999999999888753 455899999999999999998763 2222 59999999987654100
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+++||+|++... .+...+++.+.++|+|||.+++.
T Consensus 138 ~~~~fD~V~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 138 VRESYDIVTARAV--------ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp TTTCEEEEEEECC--------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccCCccEEEEecc--------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 1478999998662 23678999999999999998765
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=135.26 Aligned_cols=119 Identities=17% Similarity=0.229 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.+.+.++..+...++.+|||+|||+|.++..++..+..+|+|+|+|+ |++.|+++... .++..++.++++|
T Consensus 37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~--------~~l~~~v~~~~~d 107 (348)
T 2y1w_A 37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKS--------NNLTDRIVVIPGK 107 (348)
T ss_dssp HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHH--------TTCTTTEEEEESC
T ss_pred HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHH--------cCCCCcEEEEEcc
Confidence 44555666666678899999999999999988887667999999996 88999888763 3445679999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.++++ .++||+|++...++|+. .+.....+.++.++|||||.++++.
T Consensus 108 ~~~~~~------~~~~D~Ivs~~~~~~~~--~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 108 VEEVSL------PEQVDIIISEPMGYMLF--NERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp TTTCCC------SSCEEEEEECCCBTTBT--TTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hhhCCC------CCceeEEEEeCchhcCC--hHHHHHHHHHHHhhcCCCeEEEEec
Confidence 988764 36899999998777653 2345677888999999999998553
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=123.09 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=86.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.. .++..++.++++|+.+.... ....
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~~-~~~~ 113 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAI--------TKEPEKFEVRKMDANRALEQ-FYEE 113 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------HTCGGGEEEEESCHHHHHHH-HHHT
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH--------hCCCcceEEEECcHHHHHHH-HHhc
Confidence 47789999999999999988876667899999999999999998763 23334799999998763210 0002
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHH--HHhcCCCcEEEEEeCChH
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i--~~~LkpgG~li~~~~~~~ 210 (372)
+++||+|++...++.. .....+..+ .++|+|||.+++.++...
T Consensus 114 ~~~fD~i~~~~~~~~~-----~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 114 KLQFDLVLLDPPYAKQ-----EIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp TCCEEEEEECCCGGGC-----CHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCEEEECCCCCch-----hHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 5789999998775421 234555666 889999999999886653
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-14 Score=124.45 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=80.4
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|..+..++.. ..+.|+|+|+|+.|++...+.... ..++.++++|+......
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----------r~nv~~i~~Da~~~~~~ 140 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----------RPNIFPLLADARFPQSY 140 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----------CTTEEEEECCTTCGGGT
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----------cCCeEEEEcccccchhh
Confidence 34779999999999999999888764 456999999999997655444331 13699999999764321
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.. ..++||+|++..+.. .....++.++.+.|||||+|++++..
T Consensus 141 ~~--~~~~~D~I~~d~a~~------~~~~il~~~~~~~LkpGG~lvisik~ 183 (232)
T 3id6_C 141 KS--VVENVDVLYVDIAQP------DQTDIAIYNAKFFLKVNGDMLLVIKA 183 (232)
T ss_dssp TT--TCCCEEEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred hc--cccceEEEEecCCCh------hHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence 11 246899999986642 23444556677799999999988643
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=134.20 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=83.4
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++......++.+|||+|||+|..+..++... ..+++++|++ .++. +++.. ..+...++.++.+|+. .
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~--------~~~~~~~v~~~~~d~~-~ 243 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLD--------APDVAGRWKVVEGDFL-R 243 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCC--------CGGGTTSEEEEECCTT-T
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--ccccc--------ccCCCCCeEEEecCCC-C
Confidence 3333445678899999999999999988754 3469999994 4444 22221 1234567999999997 3
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++ + +||+|++..++|++ +..+...+|++++++|||||++++..
T Consensus 244 ~~-----p--~~D~v~~~~vlh~~--~d~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 244 EV-----P--HADVHVLKRILHNW--GDEDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp CC-----C--CCSEEEEESCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred CC-----C--CCcEEEEehhccCC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 43 3 89999999999987 45566899999999999999998765
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-14 Score=124.66 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=86.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-cc--cc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH--LD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~--~~ 157 (372)
..++.+|||||||+|.++..++... ...|+|+|+|+.|++.|++++..... .. .....++.++++|+.+ ++ +
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~--~~-~~~~~nv~~~~~d~~~~l~~~~- 119 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRA--AP-AGGFQNIACLRSNAMKHLPNFF- 119 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHH--ST-TCCCTTEEEEECCTTTCHHHHC-
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHH--HH-hcCCCeEEEEECcHHHhhhhhC-
Confidence 3567899999999999999988764 45799999999999999887541000 00 0112479999999986 44 3
Q ss_pred cccCCCCCeeEEEecccccccCCCHHH----HHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEAR----ARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~----~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
++++||.|++.+...|.-..... ...+++++.++|||||.|++.+......
T Consensus 120 ----~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~ 174 (235)
T 3ckk_A 120 ----YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELH 174 (235)
T ss_dssp ----CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHH
T ss_pred ----CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHH
Confidence 56899999876654432000000 1479999999999999999998876543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-14 Score=132.69 Aligned_cols=118 Identities=21% Similarity=0.252 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.|.+.++......++.+|||+|||+|.++..++..+..+|+|+|+| .|++.|+++... .++..++.++++|
T Consensus 25 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~--------~~~~~~i~~~~~d 95 (328)
T 1g6q_1 25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVEL--------NGFSDKITLLRGK 95 (328)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHH--------TTCTTTEEEEESC
T ss_pred HHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHH--------cCCCCCEEEEECc
Confidence 3444444444455788999999999999988887766689999999 599999998763 3445679999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+.++++ ++++||+|++....+++ .....+..++.++.++|||||.++
T Consensus 96 ~~~~~~-----~~~~~D~Ivs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 96 LEDVHL-----PFPKVDIIISEWMGYFL-LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTTSCC-----SSSCEEEEEECCCBTTB-STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccC-----CCCcccEEEEeCchhhc-ccHHHHHHHHHHHHhhcCCCeEEE
Confidence 998776 56789999997544433 123456789999999999999987
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-14 Score=125.42 Aligned_cols=101 Identities=25% Similarity=0.278 Sum_probs=82.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++... .++. +.+.++|+.+. +
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~--------~~~~--v~~~~~d~~~~-~----- 180 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKR--------NGVR--PRFLEGSLEAA-L----- 180 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHH--------TTCC--CEEEESCHHHH-G-----
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHH--------cCCc--EEEEECChhhc-C-----
Confidence 56789999999999999988877666 999999999999999998763 2222 78899998752 2
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.++||+|+++...+ ....++.++.++|+|||+++++.
T Consensus 181 ~~~~fD~Vv~n~~~~-------~~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 181 PFGPFDLLVANLYAE-------LHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp GGCCEEEEEEECCHH-------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCEEEECCcHH-------HHHHHHHHHHHHcCCCCEEEEEe
Confidence 357899999876543 35689999999999999998764
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-14 Score=127.41 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=84.5
Q ss_pred CCCEEEEecCCccc----cHHHHHHc-C----CCEEEEEeCChHHHHHHHHHhcCCCcc---------------------
Q 017369 84 RGDVVLDLACGKGG----DLIKWDKA-K----IGYYVGIDIAEGSIEDCRTRYNGDADH--------------------- 133 (372)
Q Consensus 84 ~~~~VLDlGcG~G~----~~~~l~~~-~----~~~v~gvD~s~~~l~~a~~~~~~~~~~--------------------- 133 (372)
++.+|||+|||+|. ++..+... + ..+|+|+|+|+.||+.|++........
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 44444433 2 237999999999999999864210000
Q ss_pred -cccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 134 -HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 134 -~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..-...+..++.|.++|+.+.++. ..++||+|+|.++++|+ +.+...++++++++.|+|||+|++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~----~~~~fDlI~crnvliyf--~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYN----VPGPFDAIFCRNVMIYF--DKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCC----CCCCEEEEEECSSGGGS--CHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCCC----cCCCeeEEEECCchHhC--CHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 000000113699999999875541 24789999999999997 56677999999999999999998743
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=121.94 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=82.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
+.+..+|||+|||+|.++..+... +..+|+|+|+|+.|++.|++++.. .+...++.+ .|.....
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~--------~g~~~~v~~--~d~~~~~----- 111 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGK--------LKTTIKYRF--LNKESDV----- 111 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHH--------SCCSSEEEE--ECCHHHH-----
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh--------cCCCccEEE--ecccccC-----
Confidence 366889999999999999998764 344899999999999999999864 233334555 5654432
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+.++||+|++..++|++ ++.+..+..+.+.|+|||+||
T Consensus 112 -~~~~~DvVLa~k~LHlL----~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 112 -YKGTYDVVFLLKMLPVL----KQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp -TTSEEEEEEEETCHHHH----HHTTCCHHHHHHTCEEEEEEE
T ss_pred -CCCCcChhhHhhHHHhh----hhhHHHHHHHHHHhCCCCEEE
Confidence 56889999999999998 677788889999999999776
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=122.98 Aligned_cols=110 Identities=18% Similarity=0.130 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+...++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|+++.... . ++.++++|+.
T Consensus 59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~----------~-~v~~~~~d~~ 126 (231)
T 1vbf_A 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY----------N-NIKLILGDGT 126 (231)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC----------S-SEEEEESCGG
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhc----------C-CeEEEECCcc
Confidence 4445555567788999999999999999888765 68999999999999999988631 2 6999999987
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+... .+++||+|++..+++|+. .++.++|+|||++++.++..
T Consensus 127 ~~~~-----~~~~fD~v~~~~~~~~~~----------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 127 LGYE-----EEKPYDRVVVWATAPTLL----------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp GCCG-----GGCCEEEEEESSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred cccc-----cCCCccEEEECCcHHHHH----------HHHHHHcCCCcEEEEEEcCC
Confidence 6221 357899999999999872 36889999999999988654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=123.20 Aligned_cols=107 Identities=10% Similarity=0.004 Sum_probs=84.4
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-ccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~ 162 (372)
++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++... .++ .++.++++|+.+. +. .
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~--------~~~-~~v~~~~~D~~~~~~~-----~ 119 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLAT--------LKA-GNARVVNSNAMSFLAQ-----K 119 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHH--------TTC-CSEEEECSCHHHHHSS-----C
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEECCHHHHHhh-----c
Confidence 6789999999999999987777666899999999999999998863 222 4799999998763 32 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHH--hcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~li~~~~~~ 209 (372)
.++||+|++...++. .....+++.+.+ +|+|||.+++++...
T Consensus 120 ~~~fD~V~~~~p~~~-----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 120 GTPHNIVFVDPPFRR-----GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp CCCEEEEEECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CCCCCEEEECCCCCC-----CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 578999999877442 335567777765 599999999887544
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=125.62 Aligned_cols=100 Identities=20% Similarity=0.365 Sum_probs=84.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|..+..++... ...|+|+|+|+.+++.|+++.. ++.+.++|+.++++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~----- 144 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP--------------QVTFCVASSHRLPF----- 144 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTSCSB-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC--------------CcEEEEcchhhCCC-----
Confidence 578899999999999999988763 4589999999999999988764 47889999988776
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
++++||+|++.++.. +++++.++|||||.+++.+|+...+
T Consensus 145 ~~~~fD~v~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~~~~~ 184 (269)
T 1p91_A 145 SDTSMDAIIRIYAPC-----------KAEELARVVKPGGWVITATPGPRHL 184 (269)
T ss_dssp CTTCEEEEEEESCCC-----------CHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred CCCceeEEEEeCChh-----------hHHHHHHhcCCCcEEEEEEcCHHHH
Confidence 668999999876532 4789999999999999999877543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-14 Score=127.33 Aligned_cols=104 Identities=10% Similarity=0.019 Sum_probs=85.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.. +++..+++++++|+.+...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~--------n~~~~~v~~~~~D~~~~~~----- 189 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL--------NKVEDRMSAYNMDNRDFPG----- 189 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHH--------TTCTTTEEEECSCTTTCCC-----
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH--------cCCCceEEEEECCHHHhcc-----
Confidence 567899999999999999999887665799999999999999998763 3445569999999987653
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+++||+|++..... ...++.++.++|+|||.+++...
T Consensus 190 -~~~fD~Vi~~~p~~--------~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 190 -ENIADRILMGYVVR--------THEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp -CSCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -cCCccEEEECCchh--------HHHHHHHHHHHCCCCeEEEEEEe
Confidence 57899999864422 24788999999999999987653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=115.79 Aligned_cols=111 Identities=18% Similarity=0.265 Sum_probs=89.4
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++..+...++.+|||+|||+|..+..++. ...+++|+|+|+.+++.|+++... .++ .++.++++|+.+ +
T Consensus 27 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~--------~~~-~~~~~~~~d~~~-~ 95 (183)
T 2yxd_A 27 SIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAK--------FNI-KNCQIIKGRAED-V 95 (183)
T ss_dssp HHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHH--------TTC-CSEEEEESCHHH-H
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHH--------cCC-CcEEEEECCccc-c
Confidence 44444566888999999999999998877 666899999999999999998863 222 369999999987 4
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
+ ++++||+|++..+ + +...+++++.++ |||.+++..++....
T Consensus 96 ~-----~~~~~D~i~~~~~-~-------~~~~~l~~~~~~--~gG~l~~~~~~~~~~ 137 (183)
T 2yxd_A 96 L-----DKLEFNKAFIGGT-K-------NIEKIIEILDKK--KINHIVANTIVLENA 137 (183)
T ss_dssp G-----GGCCCSEEEECSC-S-------CHHHHHHHHHHT--TCCEEEEEESCHHHH
T ss_pred c-----cCCCCcEEEECCc-c-------cHHHHHHHHhhC--CCCEEEEEecccccH
Confidence 4 4478999999887 2 256788888888 999999999877554
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=129.51 Aligned_cols=111 Identities=24% Similarity=0.293 Sum_probs=91.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++... ...+.++++|+.+... +
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~~~~----------~~~v~~~~~D~~~~~~-----~ 295 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEAN----------ALKAQALHSDVDEALT-----E 295 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHHHHT----------TCCCEEEECSTTTTSC-----T
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHc----------CCCeEEEEcchhhccc-----c
Confidence 367899999999999999998774 48999999999999999988632 2248899999987654 4
Q ss_pred CCCeeEEEecccccccC-CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+++||+|+++..+|+.- ........+++++.++|||||.+++.+...
T Consensus 296 ~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 296 EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 57999999998888620 123678899999999999999999887544
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-14 Score=117.54 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=76.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++... +|+|+|+|+.|++. .. ++.++++|+.+ ++ +
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----~~--------------~~~~~~~d~~~-~~-----~ 75 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----HR--------------GGNLVRADLLC-SI-----N 75 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----CS--------------SSCEEECSTTT-TB-----C
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----cc--------------CCeEEECChhh-hc-----c
Confidence 467799999999999999887655 99999999999987 11 47889999987 44 4
Q ss_pred CCCeeEEEecccccccCCC-----HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWST-----EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~-----~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+++||+|+++..+++.... ..+...++.++.+.| |||.+++..+
T Consensus 76 ~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 76 QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 5899999998887753111 112356888888888 9999987663
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-13 Score=121.16 Aligned_cols=105 Identities=13% Similarity=0.046 Sum_probs=82.5
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++... .++. ++.++++|+.+++....
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~l~-~v~~~~~d~~~~~~~~~-- 147 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV--------LGLK-GARALWGRAEVLAREAG-- 147 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------HTCS-SEEEEECCHHHHTTSTT--
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------hCCC-ceEEEECcHHHhhcccc--
Confidence 46789999999999999888765 456899999999999999998763 2222 59999999987653100
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..++||+|++..+. +...+++.+.++|||||++++..
T Consensus 148 ~~~~fD~I~s~a~~--------~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 148 HREAYARAVARAVA--------PLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp TTTCEEEEEEESSC--------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCCceEEEECCcC--------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 24789999986432 24689999999999999987643
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=119.77 Aligned_cols=119 Identities=11% Similarity=0.033 Sum_probs=92.3
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
..++++.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.|+++... .++..++.+.++|..+...
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~--------~gl~~~I~~~~gD~l~~~~-- 86 (230)
T 3lec_A 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE--------HGLTSKIDVRLANGLSAFE-- 86 (230)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHH--------TTCTTTEEEEECSGGGGCC--
T ss_pred HhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECchhhccc--
Confidence 356788999999999999999988875 44699999999999999999874 4556679999999987543
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh-HHHHHHHh
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA-NVIIKKLR 217 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~-~~~~~~l~ 217 (372)
+..+||+|++....- +-...++......|+++|+|+++-... +.+...+.
T Consensus 87 ---~~~~~D~IviaGmGg------~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~ 137 (230)
T 3lec_A 87 ---EADNIDTITICGMGG------RLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLA 137 (230)
T ss_dssp ---GGGCCCEEEEEEECH------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH
T ss_pred ---cccccCEEEEeCCch------HHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHH
Confidence 334799987654432 446789999999999999999877544 33433333
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-15 Score=132.41 Aligned_cols=103 Identities=22% Similarity=0.247 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++.. .++..++.++++|+.+.+ +
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~------~ 141 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEV--------YGIADKIEFICGDFLLLA------S 141 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHG------G
T ss_pred cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHH--------cCCCcCeEEEECChHHhc------c
Confidence 378999999999999999998765 6899999999999999998863 233347999999998765 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+++||+|++...+++. ......+.++.++|+|||.+++
T Consensus 142 ~~~~D~v~~~~~~~~~----~~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 142 FLKADVVFLSPPWGGP----DYATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp GCCCSEEEECCCCSSG----GGGGSSSBCTTTSCSSCHHHHH
T ss_pred cCCCCEEEECCCcCCc----chhhhHHHHHHhhcCCcceeHH
Confidence 5789999999988876 3444577789999999998654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-13 Score=122.19 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHhC-CCCCEEEEecCCc--cccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 70 NNWIKSVLVQLYA-RRGDVVLDLACGK--GGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 70 ~~~~k~~l~~~~~-~~~~~VLDlGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
..|+.+.+..+.. .....|||||||+ +..+..++. ....+|+++|.|+.|++.|++++... -..++
T Consensus 63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---------~~~~~ 133 (277)
T 3giw_A 63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---------PEGRT 133 (277)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---------SSSEE
T ss_pred HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---------CCCcE
Confidence 3455555554442 2447899999997 445555543 35568999999999999999998631 12369
Q ss_pred EEEECcCccccc--ccccCCCCCee-----EEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 145 RLICGDCYEVHL--DKVLADDAPFD-----ICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 145 ~~~~~D~~~~~~--~~~~~~~~~fD-----~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.|+++|+.+... .... ....|| .|+++.+|||+- +.+++..+++++.+.|+|||+|+++..
T Consensus 134 ~~v~aD~~~~~~~l~~~~-~~~~~D~~~p~av~~~avLH~l~-d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 134 AYVEADMLDPASILDAPE-LRDTLDLTRPVALTVIAIVHFVL-DEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp EEEECCTTCHHHHHTCHH-HHTTCCTTSCCEEEEESCGGGSC-GGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred EEEEecccChhhhhcccc-cccccCcCCcchHHhhhhHhcCC-chhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 999999987531 0000 012344 578899999982 222367899999999999999998753
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=119.71 Aligned_cols=112 Identities=18% Similarity=0.073 Sum_probs=88.2
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcCC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
..++......++.+|||+|||+|..+..++.... .+|+|+|+|+.+++.|++++.. .++ .++.+.++|+
T Consensus 67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~-~~v~~~~~d~ 137 (215)
T 2yxe_A 67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK--------LGY-DNVIVIVGDG 137 (215)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------HTC-TTEEEEESCG
T ss_pred HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCC-CCeEEEECCc
Confidence 3444455667889999999999999988887542 6899999999999999998753 111 2589999998
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..... ..++||+|++..+++++. .++.++|||||.+++.++..
T Consensus 138 ~~~~~-----~~~~fD~v~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 138 TLGYE-----PLAPYDRIYTTAAGPKIP----------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GGCCG-----GGCCEEEEEESSBBSSCC----------HHHHHTEEEEEEEEEEESSS
T ss_pred ccCCC-----CCCCeeEEEECCchHHHH----------HHHHHHcCCCcEEEEEECCC
Confidence 54221 256899999999999872 47899999999999998755
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=118.84 Aligned_cols=120 Identities=11% Similarity=0.029 Sum_probs=92.3
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
..++++.+|||+|||+|.++..++..+. .+|+|+|+++.+++.|++++.. .++..++.+.++|..+...
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~--------~gl~~~I~v~~gD~l~~~~-- 86 (244)
T 3gnl_A 17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS--------SGLTEQIDVRKGNGLAVIE-- 86 (244)
T ss_dssp TTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH--------TTCTTTEEEEECSGGGGCC--
T ss_pred HhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCceEEEEecchhhccC--
Confidence 3567889999999999999999888753 4799999999999999999874 4555679999999976543
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh-HHHHHHHhh
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA-NVIIKKLRE 218 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~-~~~~~~l~~ 218 (372)
+..+||+|++....- +-...++......|+++|+|++.-... ..+...+.+
T Consensus 87 ---~~~~~D~IviagmGg------~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~ 138 (244)
T 3gnl_A 87 ---KKDAIDTIVIAGMGG------TLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQ 138 (244)
T ss_dssp ---GGGCCCEEEEEEECH------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHH
T ss_pred ---ccccccEEEEeCCch------HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHH
Confidence 233699988654432 447789999999999999999876544 334444433
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=119.53 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=84.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||+|||+|..+..++.. ...+|+|+|+++.+++.|++++.. .++..++.++++|+.+.....
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~~-- 138 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLAT--------YHFENQVRIIEGNALEQFENV-- 138 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHH--------TTCTTTEEEEESCGGGCHHHH--
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECCHHHHHHhh--
Confidence 346789999999999999988874 356899999999999999999864 334457999999997642100
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+++||+|++..... ....+++.+.++|||||++++..
T Consensus 139 -~~~~fD~V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 139 -NDKVYDMIFIDAAKA-------QSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp -TTSCEEEEEEETTSS-------SHHHHHHHHGGGEEEEEEEEEEC
T ss_pred -ccCCccEEEEcCcHH-------HHHHHHHHHHHhcCCCeEEEEee
Confidence 257899999775432 35679999999999999998843
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-13 Score=116.77 Aligned_cols=118 Identities=10% Similarity=0.077 Sum_probs=90.1
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.++++.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.|+++... .++..++.+.++|..+. +.
T Consensus 12 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~--------~gl~~~i~~~~~d~l~~-l~-- 80 (225)
T 3kr9_A 12 FVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA--------HGLKEKIQVRLANGLAA-FE-- 80 (225)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH--------TTCTTTEEEEECSGGGG-CC--
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCceEEEEECchhhh-cc--
Confidence 45788999999999999999998865 44799999999999999999874 45566799999998642 20
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh-HHHHHHHh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA-NVIIKKLR 217 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~-~~~~~~l~ 217 (372)
+..+||+|+....-- .-...++..+...|+|+|+|++.-... ..+...+.
T Consensus 81 --~~~~~D~IviaG~Gg------~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~ 131 (225)
T 3kr9_A 81 --ETDQVSVITIAGMGG------RLIARILEEGLGKLANVERLILQPNNREDDLRIWLQ 131 (225)
T ss_dssp --GGGCCCEEEEEEECH------HHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHH
T ss_pred --cCcCCCEEEEcCCCh------HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHH
Confidence 123699888754421 346789999999999999999876544 33444443
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-13 Score=121.05 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=83.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeC-ChHHHHHHHHHhcCCCcccccccCCC----cCeEEEECcCcccc-
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI-AEGSIEDCRTRYNGDADHHQRRKKFS----FPARLICGDCYEVH- 155 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~- 155 (372)
..++.+|||+|||+|..+..++..+..+|+|+|+ |+.+++.|+++...... ...++. .++.+...|..+..
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~---~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTA---NSCSSETVKRASPKVVPYRWGDSPD 153 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-------------CCCEEEECCTTSCTH
T ss_pred hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhh---hhcccccCCCCCeEEEEecCCCccH
Confidence 3577899999999999998887766568999999 89999999998831100 001222 35777766654321
Q ss_pred -cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcC---C--CcEEEEEe
Q 017369 156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR---P--GGTFIGTM 206 (372)
Q Consensus 156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk---p--gG~li~~~ 206 (372)
+...+ ..++||+|++..+++|. .+...+++.+.++|+ | ||.+++..
T Consensus 154 ~~~~~~-~~~~fD~Ii~~dvl~~~----~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 154 SLQRCT-GLQRFQVVLLADLLSFH----QAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HHHHHH-SCSSBSEEEEESCCSCG----GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred HHHhhc-cCCCCCEEEEeCcccCh----HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 10000 24789999998888875 668899999999999 9 99876653
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=119.75 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-ccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~ 159 (372)
.++.+|||+|||+|..+..++.. ..++|+|+|+++.+++.|++++.. .++..+++++++|+.+. +....
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~l~~~~~ 128 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF--------AGLQDKVTILNGASQDLIPQLKK 128 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH--------HTCGGGEEEEESCHHHHGGGTTT
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHH--------cCCCCceEEEECCHHHHHHHHHH
Confidence 46789999999999999988874 356899999999999999998763 34455799999998652 21000
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
....++||+|++....++. .....++..+ ++|||||++++..
T Consensus 129 ~~~~~~fD~V~~d~~~~~~----~~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 129 KYDVDTLDMVFLDHWKDRY----LPDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp TSCCCCCSEEEECSCGGGH----HHHHHHHHHT-TCCCTTCEEEESC
T ss_pred hcCCCceEEEEEcCCcccc----hHHHHHHHhc-cccCCCeEEEEeC
Confidence 0012689999998877665 4556778877 9999999998764
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=134.83 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++..+...++.+|||+|||+|.++..++..+..+|+|+|+|+ |++.|++++.. .++..+++++++|+.
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~--------~gl~~~v~~~~~d~~ 217 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKS--------NNLTDRIVVIPGKVE 217 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHH--------TTCTTTEEEEESCTT
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHH--------cCCCCcEEEEECchh
Confidence 344444445567889999999999999988876667899999998 99999988763 344567999999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
++++ .++||+|++...++++. .++....+..+.++|||||.+++.
T Consensus 218 ~~~~------~~~fD~Ivs~~~~~~~~--~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 218 EVSL------PEQVDIIISEPMGYMLF--NERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp TCCC------SSCEEEEECCCCHHHHT--CHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hCcc------CCCeEEEEEeCchHhcC--cHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8654 36899999987766552 245667778899999999999853
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-13 Score=126.28 Aligned_cols=124 Identities=19% Similarity=0.065 Sum_probs=95.8
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
.++......++.+|||+|||+|.++..++... ...++|+|+|+.|++.|++++.. .++. ++.+.++|+.
T Consensus 194 ~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~--------~g~~-~i~~~~~D~~ 264 (354)
T 3tma_A 194 ALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA--------SGLS-WIRFLRADAR 264 (354)
T ss_dssp HHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH--------TTCT-TCEEEECCGG
T ss_pred HHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH--------cCCC-ceEEEeCChh
Confidence 34444456788999999999999999988743 46899999999999999999874 3444 7999999999
Q ss_pred ccccccccCCCCCeeEEEecccccccCCC----HHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
+++. +.+.||+|+++......... ......+++.+.++|+|||.+++.+++...+
T Consensus 265 ~~~~-----~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~ 323 (354)
T 3tma_A 265 HLPR-----FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALL 323 (354)
T ss_dssp GGGG-----TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHH
T ss_pred hCcc-----ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHH
Confidence 8775 45679999997544322111 1224789999999999999999999988543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=121.48 Aligned_cols=116 Identities=18% Similarity=0.262 Sum_probs=92.8
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
...++......++.+|||+|||+|.++..++.. + ..+|+|+|+|+.+++.|++++.. .++..++.++++|
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~--------~~~~~~v~~~~~d 153 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW--------AGFDDRVTIKLKD 153 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--------HTCTTTEEEECSC
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHH--------cCCCCceEEEECc
Confidence 334555556788999999999999999998876 3 56899999999999999998763 3334469999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
+.+. + ++++||+|++... +...+++++.++|+|||.+++..|..+.
T Consensus 154 ~~~~-~-----~~~~~D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 199 (255)
T 3mb5_A 154 IYEG-I-----EEENVDHVILDLP---------QPERVVEHAAKALKPGGFFVAYTPCSNQ 199 (255)
T ss_dssp GGGC-C-----CCCSEEEEEECSS---------CGGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred hhhc-c-----CCCCcCEEEECCC---------CHHHHHHHHHHHcCCCCEEEEEECCHHH
Confidence 9854 3 5678999997422 2357899999999999999999887654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=129.20 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=90.9
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC--cCeEEEECcC
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--FPARLICGDC 151 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~D~ 151 (372)
.++..+...++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|++++... ++. .++.++++|+
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n--------gl~~~~~v~~~~~D~ 284 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN--------MPEALDRCEFMINNA 284 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------CGGGGGGEEEEECST
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc--------CCCcCceEEEEechh
Confidence 34444455566899999999999999998865 568999999999999999988632 222 2588999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.+ ++ ++++||+|+++..+|+... .......+++++.++|||||.+++.....
T Consensus 285 ~~-~~-----~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 285 LS-GV-----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp TT-TC-----CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred hc-cC-----CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 86 33 5679999999988875310 11234578999999999999999877544
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-13 Score=128.63 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHH-------HHHhcCCCcccccccCCC
Q 017369 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDC-------RTRYNGDADHHQRRKKFS 141 (372)
Q Consensus 70 ~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a-------~~~~~~~~~~~~~~~~~~ 141 (372)
..++..++..+.+.++.+|||||||+|..+..++.. +..+|+|+|+++.+++.| ++++.. .++.
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~--------~Gl~ 299 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKL--------YGMR 299 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH--------TTBC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH--------cCCC
Confidence 345666776667788999999999999999988874 555899999999999988 766653 2222
Q ss_pred -cCeEEEECcCccc--ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 142 -FPARLICGDCYEV--HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 142 -~~~~~~~~D~~~~--~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.++.++++|.... ++.. ..++||+|+++.+++ . .+...+|+++.++|||||.+++.
T Consensus 300 ~~nV~~i~gD~~~~~~~~~~---~~~~FDvIvvn~~l~-~----~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 300 LNNVEFSLKKSFVDNNRVAE---LIPQCDVILVNNFLF-D----EDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp CCCEEEEESSCSTTCHHHHH---HGGGCSEEEECCTTC-C----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred CCceEEEEcCcccccccccc---ccCCCCEEEEeCccc-c----ccHHHHHHHHHHhCCCCeEEEEe
Confidence 4789998865432 1100 136899999876662 2 57788899999999999999876
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-13 Score=121.99 Aligned_cols=110 Identities=12% Similarity=0.137 Sum_probs=84.7
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++... .++. ++.++++|+.+. +
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~--------~~~~-~v~~~~~d~~~~-~----- 172 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH--------LAIK-NIHILQSDWFSA-L----- 172 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH--------HTCC-SEEEECCSTTGG-G-----
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-ceEEEEcchhhh-c-----
Confidence 56789999999999999988864 456899999999999999998763 2222 699999998763 2
Q ss_pred CCCCeeEEEeccccccc-----------CCC----------HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYS-----------WST----------EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~-----------~~~----------~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.++||+|+++...+.. +++ ......+++++.++|+|||++++..+
T Consensus 173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 35789999998432211 000 13568899999999999999988764
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=119.79 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=82.8
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCccccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~ 160 (372)
++.+|||+|||+|..+..++.. ..++|+++|+|+.+++.|++++.. .++. .++.++++|+.+.... +
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~g~~~~~i~~~~gda~~~l~~--~ 125 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE--------AGYSPSRVRFLLSRPLDVMSR--L 125 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHH--------TTCCGGGEEEECSCHHHHGGG--S
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCcCcEEEEEcCHHHHHHH--h
Confidence 4459999999999999988874 256899999999999999999874 3444 5799999998764210 1
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
++++||+|++..... +...+++.+.++|||||++++.
T Consensus 126 -~~~~fD~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 126 -ANDSYQLVFGQVSPM-------DLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp -CTTCEEEEEECCCTT-------THHHHHHHHHHHEEEEEEEEET
T ss_pred -cCCCcCeEEEcCcHH-------HHHHHHHHHHHHcCCCcEEEEe
Confidence 357899999875543 3457899999999999999874
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=128.53 Aligned_cols=135 Identities=21% Similarity=0.279 Sum_probs=93.1
Q ss_pred HHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCC------ccccHHHHHHc--CCCE
Q 017369 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACG------KGGDLIKWDKA--KIGY 109 (372)
Q Consensus 38 ~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG------~G~~~~~l~~~--~~~~ 109 (372)
..|+++|..|...... ....+..+...++..+ ..++.+||||||| +|+.+..++.. +.++
T Consensus 182 ~~fd~lA~~Y~tDK~~-----------~~h~y~~~Ye~lL~~l-~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~ 249 (419)
T 3sso_A 182 PDLSELSSRYFTPKFG-----------FLHWFTPHYDRHFRDY-RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQ 249 (419)
T ss_dssp CCHHHHHHHTTCTTBS-----------SSCBCHHHHHHHHGGG-TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCE
T ss_pred ccHHHHHHHhCCCccc-----------ccchHHHHHHHHHHhh-cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCE
Confidence 3577788888632211 0122333444444333 3456899999999 77777776654 4568
Q ss_pred EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc-CCCCCeeEEEecccccccCCCHHHHHHH
Q 017369 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEARARRA 188 (372)
Q Consensus 110 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~ 188 (372)
|+|+|+|+.|. .. ..+++|+++|+.++++...+ ..+++||+|++..+ |+. .+...+
T Consensus 250 V~GVDiSp~m~------~~------------~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~----~d~~~a 306 (419)
T 3sso_A 250 IYGLDIMDKSH------VD------------ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN----AHVRTS 306 (419)
T ss_dssp EEEEESSCCGG------GC------------BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH----HHHHHH
T ss_pred EEEEECCHHHh------hc------------CCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccc----hhHHHH
Confidence 99999999873 11 34799999999987762110 01578999998754 543 678899
Q ss_pred HHHHHHhcCCCcEEEEEeC
Q 017369 189 LANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 189 l~~i~~~LkpgG~li~~~~ 207 (372)
|+++.++|||||+|++...
T Consensus 307 L~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 307 FAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp HHHHGGGEEEEEEEEEECG
T ss_pred HHHHHHhcCCCeEEEEEec
Confidence 9999999999999998753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-13 Score=115.84 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=81.8
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++... .++. ++.++++|+.+.+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~-~v~~~~~d~~~~~------~ 129 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE--------LKLE-NIEPVQSRVEEFP------S 129 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------TTCS-SEEEEECCTTTSC------C
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-CeEEEecchhhCC------c
Confidence 4789999999999999988875 456899999999999999998763 1222 4899999998754 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++||+|++... .+...+++++.++|+|||++++...
T Consensus 130 ~~~~D~i~~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 130 EPPFDGVISRAF--------ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp CSCEEEEECSCS--------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred cCCcCEEEEecc--------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 478999997542 2356899999999999999988764
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=126.30 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=87.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...+..+|||||||+|..+..+++..+ .+++..|. +.+++.|+++... ....+++++.+|+.+.+.
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~---------~~~~rv~~~~gD~~~~~~--- 242 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF---------QEEEQIDFQEGDFFKDPL--- 242 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----------CCSEEEEESCTTTSCC---
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh---------cccCceeeecCccccCCC---
Confidence 345678999999999999999988644 36888997 8899999988762 225689999999976543
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+|+|++..++|+. +.++...+|++++++|+|||.+++.-
T Consensus 243 ----~~~D~~~~~~vlh~~--~d~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 243 ----PEADLYILARVLHDW--ADGKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp ----CCCSEEEEESSGGGS--CHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ----CCceEEEeeeecccC--CHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 458999999999986 55778899999999999999987653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-14 Score=124.31 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=72.9
Q ss_pred HHHHHHHHHhC-CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 72 WIKSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 72 ~~k~~l~~~~~-~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
++..++..+.. .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++... .+. ++.++++
T Consensus 17 ~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~--~~~~~~~ 86 (215)
T 4dzr_A 17 LVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER--------FGA--VVDWAAA 86 (215)
T ss_dssp HHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------------CCHH
T ss_pred HHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH--------hCC--ceEEEEc
Confidence 34444444433 678899999999999999988865 34799999999999999988763 112 6788889
Q ss_pred cCcccccccccCCCCCeeEEEeccccccc------CCC----------------HHHHHHHHHHHHHhcCCCcE-EEEEe
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYS------WST----------------EARARRALANVSALLRPGGT-FIGTM 206 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~------~~~----------------~~~~~~~l~~i~~~LkpgG~-li~~~ 206 (372)
|+.+ ++.......++||+|+++..++.. ... .+....+++++.++|||||+ +++.+
T Consensus 87 d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 87 DGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred chHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 9876 431100013789999997544321 000 01127889999999999999 66666
Q ss_pred C
Q 017369 207 P 207 (372)
Q Consensus 207 ~ 207 (372)
+
T Consensus 166 ~ 166 (215)
T 4dzr_A 166 G 166 (215)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=120.19 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=83.5
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..+.++.+|||+|||+|.++..++.. ..++|+|+|+|+.|++.+.+.... ..++.++++|+.+....
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-----------~~~v~~~~~d~~~~~~~ 141 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-----------RTNIIPVIEDARHPHKY 141 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-----------CTTEEEECSCTTCGGGG
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-----------cCCeEEEEcccCChhhh
Confidence 34567899999999999999998875 346899999999988887776652 14699999999873210
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.. .+++||+|++... .......++.++.++|||||.++++++
T Consensus 142 ~~--~~~~~D~V~~~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 142 RM--LIAMVDVIFADVA------QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp GG--GCCCEEEEEECCC------CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--cCCcEEEEEEcCC------CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 00 3578999998655 123456778999999999999998764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=124.71 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=90.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..++..+...++.+|||+|||+|..+..++... .++|+|+|+|+.+++.|++++.. .++ .++.++++|
T Consensus 64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~g~-~~v~~~~~d 134 (317)
T 1dl5_A 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER--------LGI-ENVIFVCGD 134 (317)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------TTC-CSEEEEESC
T ss_pred HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH--------cCC-CCeEEEECC
Confidence 4445555667889999999999999998887753 24699999999999999998763 222 248999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.+... ..++||+|++..+++++. +++.++|||||++++.+...
T Consensus 135 ~~~~~~-----~~~~fD~Iv~~~~~~~~~----------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 135 GYYGVP-----EFSPYDVIFVTVGVDEVP----------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp GGGCCG-----GGCCEEEEEECSBBSCCC----------HHHHHHEEEEEEEEEEBCBG
T ss_pred hhhccc-----cCCCeEEEEEcCCHHHHH----------HHHHHhcCCCcEEEEEECCC
Confidence 987443 347899999999999872 56788999999999987544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=122.49 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
..++....+.++.+|||+|||+|.++..++.. ...+|+++|+++.+++.|++++... ...+..++.++++|+
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC------YGQPPDNWRLVVSDL 162 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH------HTSCCTTEEEECSCG
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh------cCCCCCcEEEEECch
Confidence 34445556788999999999999999988874 3568999999999999999987521 001234799999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
.+.++ ++++||+|++... +...+++++.++|+|||.+++.+|+.+.+.+
T Consensus 163 ~~~~~-----~~~~~D~v~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 211 (280)
T 1i9g_A 163 ADSEL-----PDGSVDRAVLDML---------APWEVLDAVSRLLVAGGVLMVYVATVTQLSR 211 (280)
T ss_dssp GGCCC-----CTTCEEEEEEESS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred HhcCC-----CCCceeEEEECCc---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH
Confidence 87765 5678999998322 2347899999999999999999998765443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-13 Score=119.87 Aligned_cols=117 Identities=16% Similarity=0.266 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCccccccc-CCCcCeEEEECc
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK-KFSFPARLICGD 150 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~D 150 (372)
..++......++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++.. . + ..++.+.++|
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~--------~~g-~~~v~~~~~d 156 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA--------FWQ-VENVRFHLGK 156 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------HCC-CCCEEEEESC
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------hcC-CCCEEEEECc
Confidence 33445556778999999999999999988876 3 56899999999999999998752 1 1 3468999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHH
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 213 (372)
+.+.++ ++++||+|++.. .+...+++++.++|+|||.+++..|..+.+.
T Consensus 157 ~~~~~~-----~~~~~D~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 205 (258)
T 2pwy_A 157 LEEAEL-----EEAAYDGVALDL---------MEPWKVLEKAALALKPDRFLVAYLPNITQVL 205 (258)
T ss_dssp GGGCCC-----CTTCEEEEEEES---------SCGGGGHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred hhhcCC-----CCCCcCEEEECC---------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHH
Confidence 987755 567899999732 2344789999999999999999999875443
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=128.46 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=89.4
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
|.+.++......++.+|||||||+|.++...++.+..+|+|||.|+ |++.|++.... +++..+++++++|+
T Consensus 71 Y~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~--------n~~~~~i~~i~~~~ 141 (376)
T 4hc4_A 71 YRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRF--------NGLEDRVHVLPGPV 141 (376)
T ss_dssp HHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHH--------TTCTTTEEEEESCT
T ss_pred HHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHH--------cCCCceEEEEeeee
Confidence 3334433333347899999999999888877777888999999996 88999888764 56677899999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
.++.+ +++||+|++...-..+ ..+..+..++....+.|||||.++
T Consensus 142 ~~~~l------pe~~DvivsE~~~~~l-~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 142 ETVEL------PEQVDAIVSEWMGYGL-LHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TTCCC------SSCEEEEECCCCBTTB-TTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred eeecC------CccccEEEeecccccc-cccchhhhHHHHHHhhCCCCceEC
Confidence 98876 3789999985433222 223457788899999999999987
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=123.18 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=81.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..+..+|||||||+|..+..+++.. ..+++++|+ +.+++.|++ ..+++++.+|+.+ ++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D~~~-~~---- 257 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------------FPGVTHVGGDMFK-EV---- 257 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------------CTTEEEEECCTTT-CC----
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------------cCCeEEEeCCcCC-CC----
Confidence 4567899999999999999998753 447999999 888876642 1369999999987 65
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.+ |+|++..++|++ +.++...+|++++++|||||++++..
T Consensus 258 -p~~--D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 258 -PSG--DTILMKWILHDW--SDQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp -CCC--SEEEEESCGGGS--CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -CCC--CEEEehHHhccC--CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 433 999999999986 56778899999999999999988754
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=118.08 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=84.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCC------CEEEEEeCChHHHHHHHHHhcCCCcccccccCC----CcCeEEEECc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKI------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF----SFPARLICGD 150 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~D 150 (372)
.+.++.+|||+|||+|..+..++.... .+|+|+|+++.+++.|+++... .++ ..++.++++|
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~~~~~v~~~~~d 148 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKR--------DKPELLKIDNFKIIHKN 148 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHH--------HCGGGGSSTTEEEEECC
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHH--------cCccccccCCEEEEECC
Confidence 467889999999999999988877532 5899999999999999998763 111 2369999999
Q ss_pred Ccccc----cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 151 CYEVH----LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 151 ~~~~~----~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+.+.. . ..++||+|++..+++++ ++++.++|+|||++++.++.
T Consensus 149 ~~~~~~~~~~-----~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 149 IYQVNEEEKK-----ELGLFDAIHVGASASEL----------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp GGGCCHHHHH-----HHCCEEEEEECSBBSSC----------CHHHHHHEEEEEEEEEEEEE
T ss_pred hHhcccccCc-----cCCCcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEcc
Confidence 97643 3 34789999999988765 37788999999999988764
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.7e-13 Score=123.00 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=83.8
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++.... ......+++++++|+.+.... .
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~-----~~~~~~~v~~~~~D~~~~~~~--~- 165 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQIS-----RSLADPRATVRVGDGLAFVRQ--T- 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHH-----GGGGCTTEEEEESCHHHHHHS--S-
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhh-----cccCCCcEEEEECcHHHHHHh--c-
Confidence 56789999999999999998876 34689999999999999999873100 011135799999999765431 0
Q ss_pred CCCCeeEEEecccccccCCCHHHH--HHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~--~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.+++||+|++....++. ..... ..+++++.++|||||++++...+
T Consensus 166 ~~~~fDvIi~d~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 166 PDNTYDVVIIDTTDPAG--PASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp CTTCEEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCceeEEEECCCCccc--cchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 25789999997665432 11122 68999999999999999887644
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=115.15 Aligned_cols=110 Identities=13% Similarity=0.104 Sum_probs=81.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+++.+|||+|||+|..+..++..+. .|+|+|+|+.+++.|+++... .++ +++++++|+.+.... ....
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~--------~~~--~~~~~~~d~~~~~~~-~~~~ 107 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRR--------TGL--GARVVALPVEVFLPE-AKAQ 107 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHH--------HTC--CCEEECSCHHHHHHH-HHHT
T ss_pred cCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHH--------cCC--ceEEEeccHHHHHHh-hhcc
Confidence 3778999999999999999887765 499999999999999998763 222 689999998763110 0001
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHH--HhcCCCcEEEEEeCChH
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~li~~~~~~~ 210 (372)
.++||+|++...++ . . ...+++.+. ++|+|||.++++++...
T Consensus 108 ~~~~D~i~~~~~~~-~--~---~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 108 GERFTVAFMAPPYA-M--D---LAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp TCCEEEEEECCCTT-S--C---TTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCceEEEEECCCCc-h--h---HHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 34899999987654 1 1 224445555 99999999999886553
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=123.82 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=81.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..+..+|||||||+|..+..++... ..+++++|+ +.+++.|++ ..+++++.+|+.+ ++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~~~-~~---- 259 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------------FSGVEHLGGDMFD-GV---- 259 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------------CTTEEEEECCTTT-CC----
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------------cCCCEEEecCCCC-CC----
Confidence 4567899999999999999998753 447999999 888876642 1369999999986 54
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.+ |+|++..++|++ +.++...+|++++++|+|||++++..
T Consensus 260 -p~~--D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 260 -PKG--DAIFIKWICHDW--SDEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp -CCC--SEEEEESCGGGB--CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -CCC--CEEEEechhhcC--CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 433 999999999987 55678899999999999999988754
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-13 Score=117.04 Aligned_cols=105 Identities=23% Similarity=0.282 Sum_probs=84.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCC----CcCeEEEECcCcccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF----SFPARLICGDCYEVH 155 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~ 155 (372)
+.++.+|||+|||+|..+..++.. +. .+|+|+|+|+.+++.|+++... .+. ..++.++++|+....
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~~v~~~~~d~~~~~ 146 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK--------DDPTLLSSGRVQLVVGDGRMGY 146 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------HCTHHHHTSSEEEEESCGGGCC
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh--------hcccccCCCcEEEEECCcccCc
Confidence 678899999999999999888765 22 5899999999999999988753 111 236899999987544
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
. ..++||+|++...++++ +.++.++|||||+++++++..
T Consensus 147 ~-----~~~~fD~i~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 147 A-----EEAPYDAIHVGAAAPVV----------PQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp G-----GGCCEEEEEECSBBSSC----------CHHHHHTEEEEEEEEEEESCT
T ss_pred c-----cCCCcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEecC
Confidence 3 35789999999888765 357889999999999988654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=118.02 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=85.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-cccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~ 158 (372)
..++.+|||+|||+|..+..++... .++|+|+|+|+.+++.|++++.. .++..++.++++|+.+. +.
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~g~~~~v~~~~~d~~~~l~~-- 130 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL--------AGVDQRVTLREGPALQSLES-- 130 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHH--------TTCTTTEEEEESCHHHHHHT--
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEEcCHHHHHHh--
Confidence 3467899999999999999888752 56899999999999999999864 34455799999998763 22
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....++||+|++.... .....+++++.++|||||++++...
T Consensus 131 -~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 131 -LGECPAFDLIFIDADK-------PNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp -CCSCCCCSEEEECSCG-------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred -cCCCCCeEEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 1123589999986543 3456799999999999999988654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=128.01 Aligned_cols=121 Identities=15% Similarity=0.201 Sum_probs=93.0
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
..+.++..+...++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.|+++.... ...+.++.+|
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~----------~~~~~~~~~d 253 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN----------GVEGEVFASN 253 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT----------TCCCEEEECS
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----------CCCCEEEEcc
Confidence 344454444345677999999999999999887654 48999999999999999988631 2236778888
Q ss_pred CcccccccccCCCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.+. .+++||+|+++..+|+... .......+++++.++|||||.+++..+..
T Consensus 254 ~~~~-------~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 254 VFSE-------VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp TTTT-------CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred cccc-------ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 8653 2478999999998875211 23567899999999999999999887554
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-13 Score=120.52 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=83.4
Q ss_pred CCCCEEEEecCCccccHHHHHHc---CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC----------------
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP---------------- 143 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~---------------- 143 (372)
.++.+|||+|||+|.++..++.. ...+|+|+|+|+.+++.|+++....... ++..+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 124 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPA-----GLTARELERREQSERFGKPSY 124 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHH-----HHHHHHHHHHHHHHHHCCHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhc-----cccccchhhhhhhhhcccccc
Confidence 35689999999999999988765 2347999999999999999887632000 00001
Q ss_pred ---------eE-------------EEECcCcccccccccCCCCCeeEEEecccccccCC-----CHHHHHHHHHHHHHhc
Q 017369 144 ---------AR-------------LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALANVSALL 196 (372)
Q Consensus 144 ---------~~-------------~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~i~~~L 196 (372)
+. ++++|+.+...........+||+|+|+..+++... .......+++++.++|
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~L 204 (250)
T 1o9g_A 125 LEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL 204 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhc
Confidence 44 89999876321000001248999999876655421 1467789999999999
Q ss_pred CCCcEEEEE
Q 017369 197 RPGGTFIGT 205 (372)
Q Consensus 197 kpgG~li~~ 205 (372)
+|||+++++
T Consensus 205 kpgG~l~~~ 213 (250)
T 1o9g_A 205 PAHAVIAVT 213 (250)
T ss_dssp CTTCEEEEE
T ss_pred CCCcEEEEe
Confidence 999999883
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-13 Score=122.03 Aligned_cols=113 Identities=13% Similarity=0.178 Sum_probs=88.1
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
++......++.+|||+|||+|..+..++.. +..+|+|+|+++.+++.|++++... .+ ..++.++++|+.+
T Consensus 102 ~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~g-~~~v~~~~~d~~~ 173 (275)
T 1yb2_A 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF-------YD-IGNVRTSRSDIAD 173 (275)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-------SC-CTTEEEECSCTTT
T ss_pred HHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhc-------CC-CCcEEEEECchhc
Confidence 333445678899999999999999988875 3568999999999999999988631 01 2369999999976
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
++ ++++||+|++. + .+...+++++.++|||||.+++.+++...
T Consensus 174 -~~-----~~~~fD~Vi~~-----~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 216 (275)
T 1yb2_A 174 -FI-----SDQMYDAVIAD-----I----PDPWNHVQKIASMMKPGSVATFYLPNFDQ 216 (275)
T ss_dssp -CC-----CSCCEEEEEEC-----C----SCGGGSHHHHHHTEEEEEEEEEEESSHHH
T ss_pred -cC-----cCCCccEEEEc-----C----cCHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 43 45789999982 2 23458999999999999999999988743
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=123.51 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=80.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||+|||+|..+..++... ...++++|+ +.+++.|++ ..+++++.+|+.+ ++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~~~-~~---- 265 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------------LSGIEHVGGDMFA-SV---- 265 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------------CTTEEEEECCTTT-CC----
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------------cCCCEEEeCCccc-CC----
Confidence 4567899999999999999988764 447999999 888876643 1259999999986 54
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+. ||+|++..++||+ +......+|++++++|+|||++++.
T Consensus 266 -~~--~D~v~~~~~lh~~--~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 266 -PQ--GDAMILKAVCHNW--SDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp -CC--EEEEEEESSGGGS--CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CC--CCEEEEecccccC--CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 33 9999999999987 4455669999999999999998876
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=116.66 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=91.8
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++......++.+|||+|||+|..+..++.. ..+|+++|+++.+++.|+++... .++..++.+..+|+.+..
T Consensus 83 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~ 153 (248)
T 2yvl_A 83 IALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKK--------FNLGKNVKFFNVDFKDAE 153 (248)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHH--------TTCCTTEEEECSCTTTSC
T ss_pred HHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHH--------cCCCCcEEEEEcChhhcc
Confidence 444455678899999999999999998877 66899999999999999998763 233357899999987644
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
. +++.||+|++... ++..+++++.++|+|||.+++.++..+.+.+
T Consensus 154 ~-----~~~~~D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~ 198 (248)
T 2yvl_A 154 V-----PEGIFHAAFVDVR---------EPWHYLEKVHKSLMEGAPVGFLLPTANQVIK 198 (248)
T ss_dssp C-----CTTCBSEEEECSS---------CGGGGHHHHHHHBCTTCEEEEEESSHHHHHH
T ss_pred c-----CCCcccEEEECCc---------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence 2 3468999997322 3457899999999999999999998754433
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.9e-13 Score=118.21 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++..+...++.+|||+|||+|..+..++.....+|+|+|+++.+++.|+++.... ++ .++.++++|+.
T Consensus 80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~-~~v~~~~~d~~ 150 (235)
T 1jg1_A 80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA--------GV-KNVHVILGDGS 150 (235)
T ss_dssp HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT--------TC-CSEEEEESCGG
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc--------CC-CCcEEEECCcc
Confidence 3445555567788999999999999999887754368999999999999999987631 22 25899999973
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.++. ...+||+|++..+++++. .++.++|+|||.+++.+++.
T Consensus 151 -~~~~----~~~~fD~Ii~~~~~~~~~----------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 151 -KGFP----PKAPYDVIIVTAGAPKIP----------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp -GCCG----GGCCEEEEEECSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred -cCCC----CCCCccEEEECCcHHHHH----------HHHHHhcCCCcEEEEEEecC
Confidence 3331 234699999999998762 36789999999999998765
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-11 Score=108.06 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=81.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..++..+...|+|+|+|+.+++.|+++... .++ ++.++++|+.+++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~--~~~~~~~d~~~~~------ 110 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE--------FKG--KFKVFIGDVSEFN------ 110 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG--------GTT--SEEEEESCGGGCC------
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH--------cCC--CEEEEECchHHcC------
Confidence 457889999999999999998877666899999999999999998863 222 6999999997642
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++||+|+++..+++. .......+++.+.++| ||.+++.+++
T Consensus 111 --~~~D~v~~~~p~~~~--~~~~~~~~l~~~~~~l--~~~~~~~~~~ 151 (207)
T 1wy7_A 111 --SRVDIVIMNPPFGSQ--RKHADRPFLLKAFEIS--DVVYSIHLAK 151 (207)
T ss_dssp --CCCSEEEECCCCSSS--STTTTHHHHHHHHHHC--SEEEEEEECC
T ss_pred --CCCCEEEEcCCCccc--cCCchHHHHHHHHHhc--CcEEEEEeCC
Confidence 479999998877654 2123457788888888 6655555433
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=122.44 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=91.8
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CC-CEEEEEeCChHHHHHHHHHhcCCCcc--cccccCCCcCeEEEEC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KI-GYYVGIDIAEGSIEDCRTRYNGDADH--HQRRKKFSFPARLICG 149 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 149 (372)
..++..+.+.++.+|||+|||+|.++..++.. +. .+|+|+|+++.+++.|++++...+.. .....+...++.++++
T Consensus 95 ~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 33455556788999999999999999988875 43 68999999999999999987521000 0000011347999999
Q ss_pred cCccc--ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 150 DCYEV--HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 150 D~~~~--~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
|+.+. ++ ++++||+|++..... ..++.++.++|+|||.+++..++...+...+.
T Consensus 175 d~~~~~~~~-----~~~~fD~V~~~~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 230 (336)
T 2b25_A 175 DISGATEDI-----KSLTFDAVALDMLNP---------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLD 230 (336)
T ss_dssp CTTCCC------------EEEEEECSSST---------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHH
T ss_pred ChHHccccc-----CCCCeeEEEECCCCH---------HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Confidence 99875 33 456899999854332 23789999999999999999998876554433
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=116.35 Aligned_cols=122 Identities=14% Similarity=0.237 Sum_probs=84.8
Q ss_pred CCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-ccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~ 160 (372)
.++.+|||+|||+|.++..++.... ..|+|+|+|+.+++.|++++...........++ .++.++++|+.+ ++ ...
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~--~~~ 124 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLP--NFF 124 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGG--GTS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHH--Hhc
Confidence 4678999999999999999987654 489999999999999988765210000000022 379999999976 33 111
Q ss_pred CCCCCeeEEEecccccccCCCHHH------HHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEAR------ARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~------~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
+.+.+|.|++.+.-.+. .... ...++.++.++|+|||.|++.+....
T Consensus 125 -~~~~~d~v~~~~p~p~~--k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~ 177 (246)
T 2vdv_E 125 -EKGQLSKMFFCFPDPHF--KQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKD 177 (246)
T ss_dssp -CTTCEEEEEEESCCCC--------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred -cccccCEEEEECCCccc--ccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHH
Confidence 56789999865432221 0000 04799999999999999999876653
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-13 Score=120.02 Aligned_cols=122 Identities=16% Similarity=0.055 Sum_probs=87.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc---
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--- 157 (372)
..++.+|||+|||+|.++..++... ..+|+|+|+++.+++.|++++.... ..++..++.++++|+.+....
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~-----~~~l~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD-----NAAFSARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGG-----GTTTGGGEEEEECCTTCCHHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhh-----hCCCcceEEEEeCCHHHHhhhhhh
Confidence 3467899999999999999888764 4579999999999999999876300 022334699999999876210
Q ss_pred cccCCCCCeeEEEeccccccc--------------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 158 KVLADDAPFDICSCQFAMHYS--------------WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~--------------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..+ ++++||+|+++..+... .........+++.+.++|||||+|++..+..
T Consensus 109 ~~~-~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 173 (260)
T 2ozv_A 109 AGL-PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ 173 (260)
T ss_dssp TTC-CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred hcc-CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence 001 46789999998433211 0011236789999999999999999887654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=114.72 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=84.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
..++.+|||+|||+|..+..++... .++|+|+|+++.+++.|++++.. .++..++.++++|+.+......
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~~~ 127 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER--------ANLNDRVEVRTGLALDSLQQIE 127 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEESCHHHHHHHHH
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEEcCHHHHHHHHH
Confidence 3467899999999999999988753 45899999999999999998863 3445579999999865321000
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....++||+|++..... ....+++.+.++|+|||++++..+
T Consensus 128 ~~~~~~fD~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 128 NEKYEPFDFIFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp HTTCCCCSEEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred hcCCCCcCEEEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 00126799999876533 356899999999999999988654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=112.59 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=76.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC---CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc-
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD- 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~- 157 (372)
+.++.+|||+|||+|.++..++... ..+|+|+|+|+.+ . ..++.++++|+.+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~------------~~~v~~~~~d~~~~~~~~ 79 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------P------------IPNVYFIQGEIGKDNMNN 79 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------C------------CTTCEEEECCTTTTSSCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------C------------CCCceEEEccccchhhhh
Confidence 4678899999999999999988753 3689999999821 1 12588899999876500
Q ss_pred --------------------cccCCCCCeeEEEecccccccCCCHHH-------HHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 158 --------------------KVLADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 158 --------------------~~~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..+ ++++||+|++..++++.-....+ ...+++++.++|||||.|++.+..
T Consensus 80 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 80 IKNINYIDNMNNNSVDYKLKEIL-QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp C-----------CHHHHHHHHHH-TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hccccccccccchhhHHHHHhhc-CCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 001 45789999998877653110111 134889999999999999987654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-12 Score=108.75 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=77.9
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++.. ++.++++|+.+++
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~--------------~~~~~~~d~~~~~----- 108 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------------GVNFMVADVSEIS----- 108 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCGGGCC-----
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC--------------CCEEEECcHHHCC-----
Confidence 345788999999999999998887755679999999999999998764 4889999987632
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++||+|+++..+++.- ......+++++.+.+ |+.+++..+..
T Consensus 109 ---~~~D~v~~~~p~~~~~--~~~~~~~l~~~~~~~--g~~~~~~~~~~ 150 (200)
T 1ne2_A 109 ---GKYDTWIMNPPFGSVV--KHSDRAFIDKAFETS--MWIYSIGNAKA 150 (200)
T ss_dssp ---CCEEEEEECCCC---------CHHHHHHHHHHE--EEEEEEEEGGG
T ss_pred ---CCeeEEEECCCchhcc--CchhHHHHHHHHHhc--CcEEEEEcCch
Confidence 6899999999988762 223357899999998 55555544443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-13 Score=112.71 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=80.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc----
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH---- 155 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---- 155 (372)
..++.+|||+|||+|.++..++.. + ..+++|+|+|+ +++. .++.++++|+.+.+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------------------~~~~~~~~d~~~~~~~~~ 79 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------------------VGVDFLQGDFRDELVMKA 79 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------------------TTEEEEESCTTSHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------------------CcEEEEEcccccchhhhh
Confidence 567889999999999999988876 3 36899999999 6532 25889999998765
Q ss_pred ----cccccCCCCCeeEEEecccccccCCCHHH-------HHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 156 ----LDKVLADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 156 ----~~~~~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+ ++++||+|++...+++.-....+ ...+++++.++|+|||.++++++..
T Consensus 80 ~~~~~-----~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 80 LLERV-----GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHH-----TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhccC-----CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 4 56789999998887764221111 1689999999999999999877643
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=116.31 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=85.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-ccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~ 159 (372)
..++.+|||+|||+|..+..++... ..+|+|+|+++.+++.|++++.. .++..++.++++|+.+. +..
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~~-- 121 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKA--------LGLESRIELLFGDALQLGEKL-- 121 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------TTCTTTEEEECSCGGGSHHHH--
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECCHHHHHHhc--
Confidence 3577899999999999999888753 46899999999999999998863 23345699999998763 220
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+++||+|++....+ +...+++.+.++|+|||.+++..
T Consensus 122 -~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 122 -ELYPLFDVLFIDAAKG-------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp -TTSCCEEEEEEEGGGS-------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred -ccCCCccEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 0147899999977653 35689999999999999999874
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-13 Score=117.66 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=73.2
Q ss_pred HHHHHHHHhCC-CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEE-ECc
Q 017369 73 IKSVLVQLYAR-RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI-CGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~-~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~D 150 (372)
+...+..+... ++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++... +... ..+
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~--------------~~~~~~~~ 90 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER--------------VVVMEQFN 90 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT--------------EEEECSCC
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc--------------ccccccce
Confidence 34455554443 4679999999999999999887666999999999999998775431 1111 112
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+...... .+ +...||.+.+..++.++ ..++.++.++|||||.+++.+
T Consensus 91 ~~~~~~~-~~-~~~~~d~~~~D~v~~~l-------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 91 FRNAVLA-DF-EQGRPSFTSIDVSFISL-------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp GGGCCGG-GC-CSCCCSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEEEEE
T ss_pred EEEeCHh-Hc-CcCCCCEEEEEEEhhhH-------HHHHHHHHHhccCCCEEEEEE
Confidence 2111100 00 11235665555554432 579999999999999998865
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-13 Score=121.86 Aligned_cols=111 Identities=10% Similarity=0.068 Sum_probs=79.8
Q ss_pred HHHHHHHHhCC-CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE-EECc
Q 017369 73 IKSVLVQLYAR-RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL-ICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~-~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~D 150 (372)
+..++..+.+. ++.+|||+|||||.++..++..+.++|+|+|+|+.|++.+.+... ++.. ...|
T Consensus 73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~--------------rv~~~~~~n 138 (291)
T 3hp7_A 73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD--------------RVRSMEQYN 138 (291)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT--------------TEEEECSCC
T ss_pred HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc--------------ccceecccC
Confidence 44455555443 577999999999999998888777799999999999998654321 2322 2334
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+..+... .+ +..+||+|+|..+++++ ..+|.++.++|||||.+++.+
T Consensus 139 i~~l~~~-~l-~~~~fD~v~~d~sf~sl-------~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 139 FRYAEPV-DF-TEGLPSFASIDVSFISL-------NLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp GGGCCGG-GC-TTCCCSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEEEEE
T ss_pred ceecchh-hC-CCCCCCEEEEEeeHhhH-------HHHHHHHHHHcCcCCEEEEEE
Confidence 4433321 11 33469999998887754 579999999999999998764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=114.99 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=82.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+.++.+|||+|||+|.++..++.. + .++|+|+|+|+.|++.++++... ..++.++++|+.+......
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~ 139 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----------RRNIVPILGDATKPEEYRA 139 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----------CTTEEEEECCTTCGGGGTT
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----------cCCCEEEEccCCCcchhhc
Confidence 567899999999999999988865 2 36899999999999999988763 1479999999986421111
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..++||+|++.... ......++.++.++|||||++++.+
T Consensus 140 --~~~~~D~v~~~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 140 --LVPKVDVIFEDVAQ------PTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp --TCCCEEEEEECCCS------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --ccCCceEEEECCCC------HhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 23589999986551 1334566999999999999998774
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.8e-13 Score=117.17 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=86.8
Q ss_pred HHHHHHHH--hCCCCCEEEEecCCccccHHHHHHc-C------CCEEEEEeCChHHHHHHHHHhcCCCcccccccCC---
Q 017369 73 IKSVLVQL--YARRGDVVLDLACGKGGDLIKWDKA-K------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--- 140 (372)
Q Consensus 73 ~k~~l~~~--~~~~~~~VLDlGcG~G~~~~~l~~~-~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--- 140 (372)
...++..+ .+.++.+|||+|||+|..+..++.. + .++|+|+|+++.+++.|+++.... +.
T Consensus 71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~ 142 (227)
T 1r18_A 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD--------DRSML 142 (227)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH--------HHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhc--------Ccccc
Confidence 33444444 3678899999999999998888764 2 248999999999999999887521 10
Q ss_pred -CcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 141 -SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 141 -~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++.++++|+.+ .+. ..++||+|++..+++++. +++.++|||||++++.+..
T Consensus 143 ~~~~v~~~~~d~~~-~~~----~~~~fD~I~~~~~~~~~~----------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 143 DSGQLLIVEGDGRK-GYP----PNAPYNAIHVGAAAPDTP----------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp HHTSEEEEESCGGG-CCG----GGCSEEEEEECSCBSSCC----------HHHHHTEEEEEEEEEEESC
T ss_pred CCCceEEEECCccc-CCC----cCCCccEEEECCchHHHH----------HHHHHHhcCCCEEEEEEec
Confidence 1268999999876 331 237899999999998762 6789999999999998854
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-13 Score=122.59 Aligned_cols=111 Identities=9% Similarity=0.147 Sum_probs=75.0
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc---ccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV---HLDKV 159 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~ 159 (372)
++.+|||+|||+|.++..++.. ...+|+|+|+|+.|++.|+++... .++..++.++++|+.+. ++..
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~~~~~- 135 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ--------NNLSDLIKVVKVPQKTLLMDALKE- 135 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEECCTTCSSTTTSTT-
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH--------cCCCccEEEEEcchhhhhhhhhhc-
Confidence 5779999999999998888764 246899999999999999998863 33444699999998652 2210
Q ss_pred cCCCCCeeEEEecccccccCCC-----------HHHHHHHHHHHHHhcCCCcEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWST-----------EARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~-----------~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
..+++||+|+++...++.... ......++.++.++|||||.+.+
T Consensus 136 -~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 136 -ESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp -CCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred -ccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 002589999998655432100 01123567889999999998753
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=121.56 Aligned_cols=116 Identities=17% Similarity=0.096 Sum_probs=85.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCc-CeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++.. .++.. ++.++++|+.+.... ..
T Consensus 151 ~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~--------~gl~~~~v~~i~~D~~~~l~~-~~ 220 (332)
T 2igt_A 151 ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVL--------AGLEQAPIRWICEDAMKFIQR-EE 220 (332)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHH--------HTCTTSCEEEECSCHHHHHHH-HH
T ss_pred cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHH--------cCCCccceEEEECcHHHHHHH-HH
Confidence 34678999999999999999988666 999999999999999998763 23333 489999999764310 00
Q ss_pred CCCCCeeEEEeccc---cc---ccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 161 ADDAPFDICSCQFA---MH---YSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 161 ~~~~~fD~V~~~~~---l~---~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
...++||+|++... .. .++....+...++..+.++|+|||.++++..
T Consensus 221 ~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 221 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred hcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 01468999999532 10 0111236778999999999999999777653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=116.10 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=83.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--ccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDK 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~ 158 (372)
.++.+|||+|||+|..+..++... ..+|+|+|+++.+++.|++++.. .++..++.++++|+.+.. +..
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~~~~ 134 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK--------AGLSDKIGLRLSPAKDTLAELIH 134 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEESCHHHHHHHHHT
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHH--------CCCCCceEEEeCCHHHHHHHhhh
Confidence 467899999999999999988752 56899999999999999999864 344556999999986532 100
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.. ..++||+|++.... .+...+++.+.++|||||++++...
T Consensus 135 ~~-~~~~fD~v~~~~~~-------~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 135 AG-QAWQYDLIYIDADK-------ANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp TT-CTTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cc-CCCCccEEEECCCH-------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 00 11789999976543 3466799999999999999988643
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=118.43 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=90.8
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
.++....+.++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++.. .++..++.++++|+.
T Consensus 103 ~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~ 174 (277)
T 1o54_A 103 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK--------WGLIERVTIKVRDIS 174 (277)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH--------TTCGGGEEEECCCGG
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------cCCCCCEEEEECCHH
Confidence 3444556778999999999999999988876 3 46899999999999999998763 233347999999987
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
+. + ++++||+|++.. .+...+++++.++|+|||.+++.++..+.
T Consensus 175 ~~-~-----~~~~~D~V~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (277)
T 1o54_A 175 EG-F-----DEKDVDALFLDV---------PDPWNYIDKCWEALKGGGRFATVCPTTNQ 218 (277)
T ss_dssp GC-C-----SCCSEEEEEECC---------SCGGGTHHHHHHHEEEEEEEEEEESSHHH
T ss_pred Hc-c-----cCCccCEEEECC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 65 3 457899999842 12447899999999999999999987643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-13 Score=125.69 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=81.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..+..+|||+|||+|..+..++... ..+++++|+ +.+++.|++. .++.++.+|+.+ ++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~d~~~-~~---- 244 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---------------NNLTYVGGDMFT-SI---- 244 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---------------TTEEEEECCTTT-CC----
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---------------CCcEEEeccccC-CC----
Confidence 4567899999999999999988763 457999999 9998876531 249999999976 44
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP---GGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---gG~li~~~ 206 (372)
+ .||+|++..++||+ +..+...+|++++++||| ||++++..
T Consensus 245 -p--~~D~v~~~~~lh~~--~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 245 -P--NADAVLLKYILHNW--TDKDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp -C--CCSEEEEESCGGGS--CHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred -C--CccEEEeehhhccC--CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 3 39999999999987 445566999999999999 99988764
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=119.70 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=87.6
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++......++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++... .++..++.++++|+.
T Consensus 112 v~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~--------~~l~~~v~~~~~D~~ 183 (284)
T 1nv8_A 112 VELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER--------HGVSDRFFVRKGEFL 183 (284)
T ss_dssp HHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH--------TTCTTSEEEEESSTT
T ss_pred HHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCceEEEECcch
Confidence 333433333346679999999999999998877445899999999999999998864 333446999999997
Q ss_pred ccccccccCCCCCe---eEEEecccccc----c-----CCCH------HHHHHHHHHHH-HhcCCCcEEEEEeCCh
Q 017369 153 EVHLDKVLADDAPF---DICSCQFAMHY----S-----WSTE------ARARRALANVS-ALLRPGGTFIGTMPDA 209 (372)
Q Consensus 153 ~~~~~~~~~~~~~f---D~V~~~~~l~~----~-----~~~~------~~~~~~l~~i~-~~LkpgG~li~~~~~~ 209 (372)
+. + + ++| |+|+++--... + ++.. .+...+++++. +.|+|||++++.++..
T Consensus 184 ~~-~-----~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~ 252 (284)
T 1nv8_A 184 EP-F-----K-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED 252 (284)
T ss_dssp GG-G-----G-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred hh-c-----c-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence 63 2 1 468 99999721110 0 1111 11237899999 9999999999988654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-13 Score=114.07 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=76.3
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.+.++.+|||+|||. +++|+|+.|++.|+++... ++.+.++|+.++++..
T Consensus 7 ~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-------------~~~~~~~d~~~~~~~~ 58 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-------------EGRVSVENIKQLLQSA 58 (176)
T ss_dssp TTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-------------TSEEEEEEGGGGGGGC
T ss_pred ccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-------------CcEEEEechhcCcccc
Confidence 34567899999999986 2399999999999998742 3889999998776410
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
. ++++||+|+|.+++||+.. +...++++++++|||||+|++..
T Consensus 59 -~-~~~~fD~V~~~~~l~~~~~---~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 59 -H-KESSFDIILSGLVPGSTTL---HSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp -C-CSSCEEEEEECCSTTCCCC---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred -C-CCCCEeEEEECChhhhccc---CHHHHHHHHHHHCCCCEEEEEEc
Confidence 0 3578999999999998622 34789999999999999998854
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=112.82 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=81.7
Q ss_pred CCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-ccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~ 159 (372)
.++.+|||+|||+|..+..++... .++|+++|+|+.+++.|++++.. .++..++.++++|+.+. +.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~--- 123 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD--------NGLIDRVELQVGDPLGIAAG--- 123 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH--------HSGGGGEEEEESCHHHHHTT---
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------CCCCceEEEEEecHHHHhcc---
Confidence 356799999999999999887652 46899999999999999998763 23345699999998753 32
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++ ||+|++.... .+...+++++.++|||||++++..
T Consensus 124 --~~~-fD~v~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 124 --QRD-IDILFMDCDV-------FNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp --CCS-EEEEEEETTT-------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred --CCC-CCEEEEcCCh-------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence 235 9999987432 235689999999999999998753
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.6e-13 Score=118.62 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=84.2
Q ss_pred CCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.++.+|||+|||+|..+..++.. ..++|+|+|+++.+++.|++++.. .++..++.++++|+.+.... ..
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--------~g~~~~i~~~~gda~~~l~~-~~ 129 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE--------AKQEHKIKLRLGPALDTLHS-LL 129 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHH--------TTCTTTEEEEESCHHHHHHH-HH
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEEcCHHHHHHH-Hh
Confidence 45689999999999999998874 256899999999999999998864 34456899999998764210 00
Q ss_pred C--CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 A--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
. ..++||+|++.... .+...+++++.++|||||++++..
T Consensus 130 ~~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 130 NEGGEHQFDFIFIDADK-------TNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp HHHCSSCEEEEEEESCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hccCCCCEeEEEEcCCh-------HHhHHHHHHHHHhcCCCeEEEEEC
Confidence 0 04789999987653 345678999999999999998853
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=117.49 Aligned_cols=110 Identities=10% Similarity=0.022 Sum_probs=82.3
Q ss_pred CEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|||||||+|..+..+++ ....++++||+++.+++.|++++.. ....+++++++|+.+.... . +++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~---------~~~~rv~v~~~Da~~~l~~--~-~~~ 158 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI---------PRAPRVKIRVDDARMVAES--F-TPA 158 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC---------CCTTTEEEEESCHHHHHHT--C-CTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc---------cCCCceEEEECcHHHHHhh--c-cCC
Confidence 4999999999999999887 3455899999999999999998752 1145799999999764210 0 357
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+||+|++....+......-....+++.+.++|+|||+|++.+.
T Consensus 159 ~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 159 SRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 8999999654332100000125899999999999999988764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.7e-13 Score=120.37 Aligned_cols=116 Identities=12% Similarity=0.037 Sum_probs=79.1
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEE--ECcCc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI--CGDCY 152 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~D~~ 152 (372)
.++....+.++.+|||||||+|.++..++.. ++|+|+|+++ |+..+++... .......++.++ ++|+.
T Consensus 65 ~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~-------~~~~~~~~v~~~~~~~D~~ 134 (265)
T 2oxt_A 65 WMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPR-------ITESYGWNIVKFKSRVDIH 134 (265)
T ss_dssp HHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCC-------CCCBTTGGGEEEECSCCTT
T ss_pred HHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhh-------hhhccCCCeEEEecccCHh
Confidence 3444445678899999999999999888766 6899999998 5432221100 001122368888 89998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCH-HHH--HHHHHHHHHhcCCCc--EEEEEeCC
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTE-ARA--RRALANVSALLRPGG--TFIGTMPD 208 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~~--~~~l~~i~~~LkpgG--~li~~~~~ 208 (372)
+++ +++||+|+|.++ ++..... +.. ..+|..+.++||||| .|++.+..
T Consensus 135 ~l~-------~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 135 TLP-------VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp TSC-------CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HCC-------CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 643 478999999877 4321111 111 138899999999999 99987743
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=129.64 Aligned_cols=114 Identities=22% Similarity=0.251 Sum_probs=84.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+..+.+|||||||.|.++..+++.+. .|+|||+|+.+|+.|+.++...+ ..++.+.++++.++... .
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~---------~~~~~~~~~~~~~~~~~--~- 130 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENP---------DFAAEFRVGRIEEVIAA--L- 130 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTST---------TSEEEEEECCHHHHHHH--C-
T ss_pred cCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcC---------CCceEEEECCHHHHhhh--c-
Confidence 34668999999999998888887654 89999999999999999886421 23699999999876310 0
Q ss_pred CCCCeeEEEecccccccCCCHHHHH--HHHHHHHHhcCCCcE-EEEEeCChHHH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARAR--RALANVSALLRPGGT-FIGTMPDANVI 212 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~--~~l~~i~~~LkpgG~-li~~~~~~~~~ 212 (372)
.++.||+|+|..+++|+ .++. ..+..+.+.|+++|. +++++...+.+
T Consensus 131 ~~~~fD~v~~~e~~ehv----~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~ 180 (569)
T 4azs_A 131 EEGEFDLAIGLSVFHHI----VHLHGIDEVKRLLSRLADVTQAVILELAVKEEP 180 (569)
T ss_dssp CTTSCSEEEEESCHHHH----HHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSS
T ss_pred cCCCccEEEECcchhcC----CCHHHHHHHHHHHHHhccccceeeEEecccccc
Confidence 45789999999999998 3332 334456677777775 44554444433
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=117.76 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=85.3
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+|||+|||+|..+..++.. +.+.|+|+|+|+.+++.++++... .++. ++.++++|+.+++...
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~--------~g~~-~v~~~~~D~~~~~~~~ 150 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR--------MGVL-NTIIINADMRKYKDYL 150 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH--------TTCC-SEEEEESCHHHHHHHH
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH--------hCCC-cEEEEeCChHhcchhh
Confidence 4678899999999999999988873 336899999999999999998863 2222 7999999997654210
Q ss_pred ccCCCCCeeEEEeccccccc--CC-----CH-------HHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFAMHYS--WS-----TE-------ARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~--~~-----~~-------~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ...++||+|++....... +. +. .....+++++.++|||||.+++++.
T Consensus 151 ~-~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 151 L-KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp H-HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred h-hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 0 014689999987321100 00 00 2247899999999999999998764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.4e-12 Score=118.59 Aligned_cols=121 Identities=15% Similarity=0.164 Sum_probs=91.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||+|||+|.++..++.... ++|+|+|+|+.|++.|++++.. .++..++.+.++|+.+++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~--------~gl~~~i~~~~~D~~~~~~---- 282 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALA--------AGVLDKIKFIQGDATQLSQ---- 282 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHH--------TTCGGGCEEEECCGGGGGG----
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH--------cCCCCceEEEECChhhCCc----
Confidence 67889999999999999999887644 3899999999999999999864 3444579999999998876
Q ss_pred CCCCCeeEEEecccccccCC---CHHH-HHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 161 ADDAPFDICSCQFAMHYSWS---TEAR-ARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~---~~~~-~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
++++||+|+++.....-.. ...+ ...+++.+.++| ||.+++.+++...+...+.
T Consensus 283 -~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~~ 340 (373)
T 3tm4_A 283 -YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEEAIA 340 (373)
T ss_dssp -TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHHHHH
T ss_pred -ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence 5689999999765432211 1122 377889999988 6777777777766555443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-12 Score=113.97 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-c-cc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H-LD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~-~~ 157 (372)
..++.+|||+|||+|..+..++... .++|+++|+++.+++.|++++.. .++..++.++++|+.+. + +.
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~g~~~~v~~~~~d~~~~~~~~~ 129 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE--------NGLENKIFLKLGSALETLQVLI 129 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHHHHHH
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCCEEEEECCHHHHHHHHH
Confidence 3467899999999999999888763 46899999999999999998863 23344699999998652 1 10
Q ss_pred ---------cccCCC--CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 ---------KVLADD--APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ---------~~~~~~--~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+ ++ ++||+|++..... +...+++++.++|+|||++++..
T Consensus 130 ~~~~~~~~~~~f-~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 130 DSKSAPSWASDF-AFGPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HCSSCCGGGTTT-CCSTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhcccccccccc-cCCCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 000 22 7899999886543 35588999999999999999875
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=116.63 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCCEEEEecCCccccHHHHHHc-----CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc---c
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV---H 155 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~---~ 155 (372)
++.+|||||||+|..+..++.. ..++|+|+|+|+.|++.|+. . ..++.++++|+.+. +
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~-------------~~~v~~~~gD~~~~~~l~ 146 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D-------------MENITLHQGDCSDLTTFE 146 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G-------------CTTEEEEECCSSCSGGGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c-------------CCceEEEECcchhHHHHH
Confidence 5679999999999999988765 35689999999999887761 1 23699999999874 3
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH-hcCCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA-LLRPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~-~LkpgG~li~~~ 206 (372)
.. ...+||+|++..+ | . +...+|.++.+ +|||||++++..
T Consensus 147 ~~----~~~~fD~I~~d~~-~-~-----~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 147 HL----REMAHPLIFIDNA-H-A-----NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp GG----SSSCSSEEEEESS-C-S-----SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred hh----ccCCCCEEEECCc-h-H-----hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 21 2347999998665 2 1 35679999997 999999999864
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-12 Score=116.82 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=85.6
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|..+..++.. +.+.|+|+|+|+.+++.+++++.. .++ .++.++++|+.+++.
T Consensus 114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~--------~g~-~~v~~~~~D~~~~~~- 183 (315)
T 1ixk_A 114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR--------LGV-LNVILFHSSSLHIGE- 183 (315)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH--------HTC-CSEEEESSCGGGGGG-
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH--------hCC-CeEEEEECChhhccc-
Confidence 35678899999999999999998874 346899999999999999998863 222 268999999987654
Q ss_pred cccCCCCCeeEEEecc------cccccCC-----CHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQF------AMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~~-----~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..++||+|++.. ++++..+ +.. ....+|+++.++|||||++++++.
T Consensus 184 ----~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 184 ----LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp ----GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ----ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 346899999842 2221100 111 126899999999999999998763
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-12 Score=120.12 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=89.0
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCc-CeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.. +++.. ++.++++|+.+..- ....
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~--------n~~~~~~v~~~~~D~~~~l~-~~~~ 281 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA--------NHLDMANHQLVVMDVFDYFK-YARR 281 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH--------TTCCCTTEEEEESCHHHHHH-HHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCccceEEEECCHHHHHH-HHHH
Confidence 57889999999999999999876666899999999999999998863 33444 79999999976311 0000
Q ss_pred CCCCeeEEEecccc-----cccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
...+||+|++.... ............++..+.++|+|||.+++++..
T Consensus 282 ~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 282 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 23589999985422 233334466778899999999999999988743
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.7e-13 Score=121.04 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=77.9
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEE--ECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI--CGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~D~~~~~ 155 (372)
....+.++.+|||+|||+|.++..++.. ++|+|+|+|+ |+..|+++.. .......++.++ ++|+.+++
T Consensus 76 ~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~-------~~~~~~~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 76 ERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPR-------LVETFGWNLITFKSKVDVTKME 145 (276)
T ss_dssp HTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCC-------CCCCTTGGGEEEECSCCGGGCC
T ss_pred HcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchh-------hhhhcCCCeEEEeccCcHhhCC
Confidence 3334568899999999999999888766 6899999999 6433322110 001122368889 89987643
Q ss_pred cccccCCCCCeeEEEecccccccCCCH-HHH--HHHHHHHHHhcCCCc--EEEEEeCC
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTE-ARA--RRALANVSALLRPGG--TFIGTMPD 208 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~~--~~~l~~i~~~LkpgG--~li~~~~~ 208 (372)
+++||+|+|..+ ++..... +.. ..+|..+.++||||| .|++.+..
T Consensus 146 -------~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 -------PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp -------CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred -------CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 478999999877 4321111 111 137899999999999 98887643
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-12 Score=113.73 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=83.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-ccc-c
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLD-K 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~-~ 158 (372)
.++.+|||+|||+|..+..++... .++|+++|+|+.+++.|++++.. .++..+++++++|+.+. +.. .
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--------~g~~~~i~~~~gda~~~l~~l~~ 149 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK--------AGVDHKIDFREGPALPVLDEMIK 149 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHHHHHHH
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCCeEEEECCHHHHHHHHHh
Confidence 466899999999999999888752 46899999999999999998864 34455799999998753 210 0
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.....++||+|++.... .+...+++.+.++|||||++++..
T Consensus 150 ~~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 150 DEKNHGSYDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SGGGTTCBSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred ccCCCCCEEEEEEcCch-------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 00014789999987542 245689999999999999998764
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=106.53 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=75.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc-
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL- 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~- 160 (372)
+.++.+|||+|||+|.++..++.. .+.|+|+|+++.. . ..++.++++|+.+.+....+
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~--------~------------~~~v~~~~~D~~~~~~~~~~~ 81 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME--------E------------IAGVRFIRCDIFKETIFDDID 81 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC--------C------------CTTCEEEECCTTSSSHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc--------c------------CCCeEEEEccccCHHHHHHHH
Confidence 468899999999999999988776 6689999999731 1 23689999999875421100
Q ss_pred --CC---CCCeeEEEecccccccC-------CCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 161 --AD---DAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 161 --~~---~~~fD~V~~~~~l~~~~-------~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.. .++||+|++........ ........++..+.++|||||.|++.+..
T Consensus 82 ~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 82 RALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp HHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 01 14899999975432110 01122467889999999999999987743
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=106.98 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=76.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CC---------CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEE-ECc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KI---------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI-CGD 150 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~---------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~D 150 (372)
+.++.+|||+|||+|.++..++.. +. .+|+|+|+|+.+ . ..++.++ ++|
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~------------~~~~~~~~~~d 79 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P------------LEGATFLCPAD 79 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C------------CTTCEEECSCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c------------CCCCeEEEecc
Confidence 567899999999999999998876 32 689999999831 0 1247888 888
Q ss_pred Ccccccccc---cCCCCCeeEEEecccccccCCCHHHH-------HHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 151 CYEVHLDKV---LADDAPFDICSCQFAMHYSWSTEARA-------RRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 151 ~~~~~~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~-------~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.+.+.... ..++++||+|++..++++......+. ..+++++.++|||||.|++.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 80 VTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp TTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred CCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 876432100 00345899999976554321111222 588999999999999999987644
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-12 Score=111.01 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=82.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.++.+|||+|||+|..+..++... .++|+++|+++.+++.|++++.. .++..++.++++|+.+.. ....
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--------~g~~~~i~~~~~d~~~~l-~~l~ 141 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK--------AGVAEKISLRLGPALATL-EQLT 141 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH--------HTCGGGEEEEESCHHHHH-HHHH
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEEcCHHHHH-HHHH
Confidence 356799999999999999888752 45899999999999999998763 334457999999976421 0000
Q ss_pred CCC--CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADD--APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~--~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+ ++||+|++.... .+...+++++.++|+|||++++..
T Consensus 142 ~~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 142 QGKPLPEFDLIFIDADK-------RNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp TSSSCCCEEEEEECSCG-------GGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred hcCCCCCcCEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 012 789999987553 345689999999999999999864
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=112.14 Aligned_cols=104 Identities=16% Similarity=0.094 Sum_probs=84.6
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.+.++.+|||+|||+|.++..++.. +.++|+|+|+|+.+++.|++++.. .++ .++.++++|+.+.+
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~--------n~l-~~~~~~~~d~~~~~---- 182 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL--------NKL-NNVIPILADNRDVE---- 182 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH--------TTC-SSEEEEESCGGGCC----
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCC-CCEEEEECChHHcC----
Confidence 3568899999999999999999876 355899999999999999998863 222 25889999998762
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+.||+|++.... ....++..+.+.|+|||.++++..
T Consensus 183 --~~~~~D~Vi~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 183 --LKDVADRVIMGYVH--------KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp --CTTCEEEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred --ccCCceEEEECCcc--------cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 24689999987654 244688999999999999987764
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.2e-12 Score=118.74 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=79.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.+..+|||+|||+|..+..++... ..+++++|+ +.+++.|++ ..+++++.+|+.+ ++
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~~~-~~----- 249 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------------NENLNFVGGDMFK-SI----- 249 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------------CSSEEEEECCTTT-CC-----
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------------CCCcEEEeCccCC-CC-----
Confidence 466899999999999999998764 347999999 788866542 1249999999986 54
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP---GGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---gG~li~~~ 206 (372)
+ .||+|++..++|++ +......+|+++.++|+| ||++++..
T Consensus 250 ~--~~D~v~~~~vlh~~--~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 250 P--SADAVLLKWVLHDW--NDEQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp C--CCSEEEEESCGGGS--CHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred C--CceEEEEcccccCC--CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 3 49999999999987 445566999999999999 99988754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-12 Score=114.89 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=83.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC--------CcCeEEEECcCcc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYE 153 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~~ 153 (372)
..++.+|||+|||+|..+..+++.+..+|+++|+++.+++.|++++ ... .++ ..+++++++|+.+
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~------~~l~~~~~~~~~~~v~~~~~D~~~ 145 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KID------NGLLEAMLNGKHEKAKLTIGDGFE 145 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTT------TTHHHHHHTTCCSSEEEEESCHHH
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhc------cccccccccCCCCcEEEEECchHH
Confidence 3466899999999999999998775568999999999999999987 320 011 3579999999865
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHH--HHHHHHHHHHhcCCCcEEEEEeC
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
... .+++||+|++....+.. .... ...+++.+.++|+|||.+++...
T Consensus 146 ~l~-----~~~~fD~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 146 FIK-----NNRGFDVIIADSTDPVG--PAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp HHH-----HCCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Hhc-----ccCCeeEEEECCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 321 14689999987654321 1122 26789999999999999998753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.8e-12 Score=113.47 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=84.9
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCccc-ccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEV-HLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~-~~~~~ 159 (372)
..+.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++.... .++ ..+++++++|+.+. +.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~------~~~~~~rv~v~~~D~~~~l~~--- 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA------GKLDDPRVDVQVDDGFMHIAK--- 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH------TTTTSTTEEEEESCSHHHHHT---
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhc------cccCCCceEEEECcHHHHHhh---
Confidence 45689999999999999998876 45689999999999999999874200 011 35799999998763 22
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|++....+......-....+++.+.++|+|||.+++.+.+
T Consensus 145 --~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 145 --SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp --CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred --CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 35789999997544321000000247899999999999999998754
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-12 Score=116.14 Aligned_cols=115 Identities=19% Similarity=0.167 Sum_probs=82.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCccc-cccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEV-HLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~-~~~~ 158 (372)
..++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.... .++ ..+++++++|+.+. +.
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~------~~~~~~rv~v~~~Da~~~l~~-- 164 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA------IGYSSSKLTLHVGDGFEFMKQ-- 164 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH------GGGGCTTEEEEESCHHHHHHT--
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhh------cccCCCcEEEEECcHHHHHhh--
Confidence 3466899999999999999998763 4689999999999999999864200 111 35799999998753 22
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.+++||+|++....+...........+++++.++|+|||.+++...
T Consensus 165 ---~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 165 ---NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp ---CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 3578999999765432100001235789999999999999998763
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=115.22 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=103.3
Q ss_pred cchhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHH-hCCCCCEEEEecCCccccHHHHHHcCC---
Q 017369 32 EDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKI--- 107 (372)
Q Consensus 32 ~~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~-~~~~~~~VLDlGcG~G~~~~~l~~~~~--- 107 (372)
..+....+++.+...+.. ......+ .+..+.....+..++..+ ...++.+|||+|||+|.++..++....
T Consensus 83 ~~~~~g~~ye~~~~~~~~-~~~~~g~-----~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~ 156 (344)
T 2f8l_A 83 SNEEIRKGLQLALLKGMK-HGIQVNH-----QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKG 156 (344)
T ss_dssp CHHHHHHHHHHHHHHHTS-SSCCGGG-----CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTS
T ss_pred ChhHHHHHHHHHHHHHhh-cccccCc-----CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhc
Confidence 344556667766666653 1111111 122333333334444333 234678999999999999988876421
Q ss_pred ---CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHH
Q 017369 108 ---GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR 184 (372)
Q Consensus 108 ---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~ 184 (372)
..++|+|+++.+++.|+.++.. .+. ++.++++|+.... ..++||+|+++..+++.. ..+.
T Consensus 157 ~~~~~v~GiDi~~~~~~~a~~n~~~--------~g~--~~~i~~~D~l~~~------~~~~fD~Ii~NPPfg~~~-~~~~ 219 (344)
T 2f8l_A 157 DVDVHASGVDVDDLLISLALVGADL--------QRQ--KMTLLHQDGLANL------LVDPVDVVISDLPVGYYP-DDEN 219 (344)
T ss_dssp SCEEEEEEEESCHHHHHHHHHHHHH--------HTC--CCEEEESCTTSCC------CCCCEEEEEEECCCSEES-CHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHh--------CCC--CceEEECCCCCcc------ccCCccEEEECCCCCCcC-chhh
Confidence 5799999999999999998752 222 5789999987532 357899999998776642 2111
Q ss_pred ---------------HHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 185 ---------------ARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 185 ---------------~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
...++..+.+.|+|||++++.+|+.
T Consensus 220 ~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 220 AKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp HTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred hhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 1268999999999999999888654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-11 Score=110.94 Aligned_cols=114 Identities=20% Similarity=0.323 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.+..++......++.+|||+|||+|.++..++... .+|+|+|+|+.|++.|+++... .+...+++++++|
T Consensus 15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~v~~~~~D 85 (285)
T 1zq9_A 15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQG--------TPVASKLQVLVGD 85 (285)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTT--------STTGGGEEEEESC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEEcc
Confidence 345556666667788999999999999999998764 4899999999999999998753 1223479999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHH--------------HH--HHhcCCCcEEE
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA--------------NV--SALLRPGGTFI 203 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~--------------~i--~~~LkpgG~li 203 (372)
+.+.++ ..||+|+++...++. .+-...++. ++ +++|+|||.++
T Consensus 86 ~~~~~~-------~~fD~vv~nlpy~~~---~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 86 VLKTDL-------PFFDTCVANLPYQIS---SPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp TTTSCC-------CCCSEEEEECCGGGH---HHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred eecccc-------hhhcEEEEecCcccc---hHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 987765 379999998766643 122233332 23 35899999874
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-12 Score=117.88 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=75.7
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeC----ChHHHHHHHHHhcCCCcccccccCC-CcCeEEEEC-cCcc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI----AEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICG-DCYE 153 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~-D~~~ 153 (372)
..+.++.+|||+|||+|.++..++.. ++|+|+|+ ++.+++.+. . ... ..++.++++ |+..
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~----------~~~~~~~v~~~~~~D~~~ 143 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--M----------STYGWNLVRLQSGVDVFF 143 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--C----------CSTTGGGEEEECSCCTTT
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--h----------hhcCCCCeEEEecccccc
Confidence 34567899999999999999988766 57999999 564432110 0 111 246899998 8876
Q ss_pred cccccccCCCCCeeEEEeccccc---ccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 154 VHLDKVLADDAPFDICSCQFAMH---YSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~---~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++ ..+||+|+|..+.+ +.. .......+|..+.++|||||.|++.+..+
T Consensus 144 l~-------~~~fD~V~sd~~~~~g~~~~-d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 144 IP-------PERCDTLLCDIGESSPNPTV-EAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp SC-------CCCCSEEEECCCCCCSSHHH-HHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CC-------cCCCCEEEECCccccCcchh-hHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 43 36899999987653 210 00111257899999999999999987655
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-11 Score=125.21 Aligned_cols=113 Identities=17% Similarity=0.220 Sum_probs=89.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCccc-cccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEV-HLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~-~~~~~~ 160 (372)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++.. +++. .++.++++|+.+. +.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~--------ngl~~~~v~~i~~D~~~~l~~---- 605 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRL--------NGLTGRAHRLIQADCLAWLRE---- 605 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTCCSTTEEEEESCHHHHHHH----
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCccceEEEecCHHHHHHh----
Confidence 46889999999999999998887777899999999999999999864 3444 4799999999863 22
Q ss_pred CCCCCeeEEEeccccc-------ccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 161 ADDAPFDICSCQFAMH-------YSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|++..-.. ..+....+...++..+.++|+|||++++++..
T Consensus 606 -~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 606 -ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp -CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred -cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 357899999964211 11223467888999999999999999988754
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9.6e-12 Score=116.46 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=83.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~ 159 (372)
..++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++.... .++ ..+++++++|+.+... .
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~------~gl~~~rv~~~~~D~~~~l~-~- 189 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA------IGYEDPRVNLVIGDGVAFLK-N- 189 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH------GGGGSTTEEEEESCHHHHHH-T-
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc------cccCCCcEEEEECCHHHHHH-h-
Confidence 3466899999999999999988763 4689999999999999999875210 011 3479999999876311 0
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
. ++++||+|++................+++++.++|+|||++++..
T Consensus 190 ~-~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 190 A-AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp S-CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred c-cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 0 347899999865422110000013689999999999999999964
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=109.79 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=83.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--cc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~ 157 (372)
..++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++.. .++..++.++++|+.+.. +.
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~g~~~~i~~~~~d~~~~~~~~~ 138 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ--------AEAEHKIDLRLKPALETLDELL 138 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH--------TTCTTTEEEEESCHHHHHHHHH
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------CCCCCeEEEEEcCHHHHHHHHH
Confidence 3567899999999999999888752 46899999999999999998863 334457999999986531 10
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
... ..++||+|++.... .....+++++.++|+|||.+++..
T Consensus 139 ~~~-~~~~~D~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 139 AAG-EAGTFDVAVVDADK-------ENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp HTT-CTTCEEEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hcC-CCCCccEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEEC
Confidence 000 01689999986542 335688999999999999998854
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=113.04 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=82.6
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCccc-ccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEV-HLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~-~~~~~ 159 (372)
..+.+|||+|||+|..+..+++. +..+|+++|+|+.+++.|++++...+ .++ ..+++++++|+.+. +.
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~------~~~~~~~v~~~~~D~~~~l~~--- 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS------CGFDDPRAEIVIANGAEYVRK--- 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH------GGGGCTTEEEEESCHHHHGGG---
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhc------cccCCCceEEEECcHHHHHhh---
Confidence 45689999999999999999876 45689999999999999999874200 011 34799999998763 22
Q ss_pred cCCCCCeeEEEecccccccCCCHH--HHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEA--RARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~--~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|++...-++. .... ....+++++.++|+|||.+++.+.+
T Consensus 160 --~~~~fD~Ii~d~~~~~~-~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 160 --FKNEFDVIIIDSTDPTA-GQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp --CSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred --CCCCceEEEEcCCCccc-CchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 35789999986432211 0111 1268999999999999999998654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=109.90 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=83.9
Q ss_pred CCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-c-ccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H-LDK 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~-~~~ 158 (372)
.++.+|||+|||+|..+..++.. + .++|+++|+++.+++.|++++.. .++..++.++++|+.+. + +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--------~g~~~~i~~~~gda~~~l~~l~~ 140 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRK--------AGVEHKINFIESDAMLALDNLLQ 140 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEEcCHHHHHHHHHh
Confidence 46789999999999999988875 2 46899999999999999998864 34455799999998753 1 100
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
...+.++||+|++.... .....+++.+.++|+|||++++..
T Consensus 141 ~~~~~~~fD~I~~d~~~-------~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 141 GQESEGSYDFGFVDADK-------PNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp STTCTTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccCCCCCcCEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEec
Confidence 00014789999986432 346789999999999999998864
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=115.20 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=85.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCccc-cccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEV-HLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~-~~~~ 158 (372)
..++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.|++++.... .++ ..+++++++|+.+. +.
T Consensus 114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~------~~~~~~~v~~~~~D~~~~l~~-- 185 (321)
T 2pt6_A 114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS------CGYEDKRVNVFIEDASKFLEN-- 185 (321)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS------GGGGSTTEEEEESCHHHHHHH--
T ss_pred CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc------cccCCCcEEEEEccHHHHHhh--
Confidence 345689999999999999998876 35689999999999999999876310 111 34799999998763 22
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHH--HHHHHHHHHhcCCCcEEEEEeCC
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~--~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.+++||+|++...-.+ ...... ..+++++.++|+|||++++...+
T Consensus 186 ---~~~~fDvIi~d~~~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 186 ---VTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp ---CCSCEEEEEEECCCSS--SGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ---cCCCceEEEECCcCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3478999998753221 111111 68999999999999999987654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.5e-12 Score=116.45 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=85.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccC-C-CcCeEEEECcCccc-ccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-F-SFPARLICGDCYEV-HLD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~-~~~ 157 (372)
..++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++.... .+ + ..+++++++|+.+. +.
T Consensus 75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~------~~~~~~~~v~~~~~D~~~~l~~- 147 (314)
T 1uir_A 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH------QGAFDDPRAVLVIDDARAYLER- 147 (314)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHH------TTGGGCTTEEEEESCHHHHHHH-
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhc------cccccCCceEEEEchHHHHHHh-
Confidence 346689999999999999998876 35689999999999999999864200 01 1 34799999999763 22
Q ss_pred cccCCCCCeeEEEecccccccC-CCHHH--HHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQFAMHYSW-STEAR--ARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~-~~~~~--~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+++||+|++....++.. ..... ...+++++.++|+|||.+++..
T Consensus 148 ----~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 148 ----TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ----CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 357899999987655400 01111 3689999999999999998765
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=110.07 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=84.4
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++.. +++..++.++++|+.++.
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~--------N~v~~~v~~~~~D~~~~~----- 188 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL--------NKVEDRMSAYNMDNRDFP----- 188 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHH--------TTCTTTEEEECSCTTTCC-----
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEeCcHHHhc-----
Confidence 4578999999999999999999887777899999999999999999874 566778999999998765
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
..+.||.|+++.-.. ...+|..+.++|||||++.+
T Consensus 189 -~~~~~D~Vi~~~p~~--------~~~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 189 -GENIADRILMGYVVR--------THEFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp -CCSCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEE
T ss_pred -cccCCCEEEECCCCc--------HHHHHHHHHHHcCCCCEEEE
Confidence 357899998764221 23577888899999998754
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=114.46 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=82.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCccc-cccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEV-HLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~-~~~~ 158 (372)
..++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.... .++ ..+++++++|+.+. +.
T Consensus 106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~------~~~~~~rv~~~~~D~~~~l~~-- 177 (314)
T 2b2c_A 106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS------CGFSHPKLDLFCGDGFEFLKN-- 177 (314)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS------GGGGCTTEEEECSCHHHHHHH--
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhc------cccCCCCEEEEEChHHHHHHh--
Confidence 3456899999999999999988763 4689999999999999999875310 012 35799999998763 22
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHH--HHHHHHHHHhcCCCcEEEEEeCC
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~--~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|++....+.. ..... ..+++++.++|+|||++++...+
T Consensus 178 ---~~~~fD~Ii~d~~~~~~--~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 178 ---HKNEFDVIITDSSDPVG--PAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp ---CTTCEEEEEECCC---------------HHHHHHHHEEEEEEEEEECCC
T ss_pred ---cCCCceEEEEcCCCCCC--cchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 35789999987643321 11122 68999999999999999997643
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=112.82 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=86.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~ 159 (372)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.|++++...+. ++ ..+++++++|+.+....
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~------~~~~~~v~~~~~D~~~~l~~-- 147 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISC------GYEDKRVNVFIEDASKFLEN-- 147 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSG------GGGSTTEEEEESCHHHHHHH--
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcc------ccCCCcEEEEECChHHHHHh--
Confidence 3466899999999999999988763 46899999999999999998753210 11 35799999998763211
Q ss_pred cCCCCCeeEEEecccccccCCCHHHH--HHHHHHHHHhcCCCcEEEEEeCC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~--~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|++....++. ..... ..+++.+.++|+|||.+++...+
T Consensus 148 --~~~~fD~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 148 --VTNTYDVIIVDSSDPIG--PAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp --CCSCEEEEEEECCCTTT--GGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred --CCCCceEEEEcCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 25789999996543321 11222 68999999999999999988654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=116.13 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=88.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.. .++ ..++.++++|+.+.... ...
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~--------ngl~~~~v~~~~~D~~~~~~~-~~~ 289 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL--------NKLDLSKAEFVRDDVFKLLRT-YRD 289 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTCCGGGEEEEESCHHHHHHH-HHH
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCccceEEEECCHHHHHHH-HHh
Confidence 57889999999999999999887667899999999999999998863 333 33799999999764310 000
Q ss_pred CCCCeeEEEeccccc-----ccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMH-----YSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
...+||+|++..... .++........++..+.+.|+|||.+++++..
T Consensus 290 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp TTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 146899999964221 11122256778999999999999999887643
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=119.04 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=88.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.. +++..++.++++|+.+.... ...
T Consensus 215 ~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~--------n~~~~~v~~~~~d~~~~~~~-~~~ 285 (396)
T 2as0_A 215 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL--------NGVEDRMKFIVGSAFEEMEK-LQK 285 (396)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHHHH-HHH
T ss_pred hhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCccceEEECCHHHHHHH-HHh
Confidence 347899999999999999999877666899999999999999999863 33334799999998764310 000
Q ss_pred CCCCeeEEEecccccc-----cCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|++...... ++........++..+.++|+|||.+++.+.+
T Consensus 286 ~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 286 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2468999998532211 1111256778999999999999998887654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-11 Score=113.68 Aligned_cols=106 Identities=11% Similarity=-0.048 Sum_probs=83.8
Q ss_pred CCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-ccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~ 160 (372)
.++.+|||+| |+|.++..++..+. .+|+|+|+|+.|++.|+++... .++. ++.++++|+.+ ++..
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~--------~g~~-~v~~~~~D~~~~l~~~--- 237 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANE--------IGYE-DIEIFTFDLRKPLPDY--- 237 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHH--------HTCC-CEEEECCCTTSCCCTT---
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-CEEEEEChhhhhchhh---
Confidence 3678999999 99999999887654 6899999999999999998863 2333 79999999987 4320
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCc-EEEEEeC
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMP 207 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~li~~~~ 207 (372)
.+++||+|+++..++.. ....+++++.++||||| .+++++.
T Consensus 238 -~~~~fD~Vi~~~p~~~~-----~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 238 -ALHKFDTFITDPPETLE-----AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp -TSSCBSEEEECCCSSHH-----HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred -ccCCccEEEECCCCchH-----HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 24689999998765432 35889999999999999 4465553
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.2e-11 Score=103.75 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=81.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+..+|||||||.|.++..+. +...|+|+||++.|++.++++.... +.+..+.++|....+.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~----------g~~~~~~v~D~~~~~~------ 165 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK----------DWDFTFALQDVLCAPP------ 165 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT----------TCEEEEEECCTTTSCC------
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc----------CCCceEEEeecccCCC------
Confidence 467899999999999998886 6668999999999999999997531 3467889999987664
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++||+|++.-++|++ +.......-++...|+++|.+| +.|
T Consensus 166 ~~~~DvvLllk~lh~L---E~q~~~~~~~ll~aL~~~~vvV-sfP 206 (253)
T 3frh_A 166 AEAGDLALIFKLLPLL---EREQAGSAMALLQSLNTPRMAV-SFP 206 (253)
T ss_dssp CCBCSEEEEESCHHHH---HHHSTTHHHHHHHHCBCSEEEE-EEE
T ss_pred CCCcchHHHHHHHHHh---hhhchhhHHHHHHHhcCCCEEE-EcC
Confidence 4699999999999987 2233334448888999997654 444
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=114.73 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=81.9
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.++..++..+. .|+|+|+|+.+++.|++++.. +++. ..+.++|+.+..-.
T Consensus 211 ~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~--------ng~~--~~~~~~D~~~~l~~--- 276 (393)
T 4dmg_A 211 MVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALR--------LGLR--VDIRHGEALPTLRG--- 276 (393)
T ss_dssp TCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH--------HTCC--CEEEESCHHHHHHT---
T ss_pred HhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHH--------hCCC--CcEEEccHHHHHHH---
Confidence 345689999999999999999988765 499999999999999998863 2222 35668998764211
Q ss_pred CCCCCeeEEEecccccc-----cCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 161 ADDAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+.||+|++...... .+....+...++..+.++|+|||.+++.+.
T Consensus 277 -~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 277 -LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp -CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1234999998643210 011124567899999999999999986553
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-11 Score=115.60 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=85.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++.. +++. ++.++++|+.+.... .....
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~--------n~~~-~~~~~~~d~~~~~~~-~~~~~ 277 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARL--------NGLG-NVRVLEANAFDLLRR-LEKEG 277 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHH--------TTCT-TEEEEESCHHHHHHH-HHHTT
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH--------cCCC-CceEEECCHHHHHHH-HHhcC
Confidence 7789999999999999999876 56899999999999999998863 2323 389999999764310 00014
Q ss_pred CCeeEEEecccccc-----cCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 164 APFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 164 ~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.+||+|++...... ++........++..+.++|+|||.+++++..
T Consensus 278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 68999998542210 1111256678999999999999999987754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=113.46 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=85.0
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+...++.+|||+|||+|..+..++.. +.+.|+|+|+|+.+++.+++++... ++ .++.++++|+.+.+.
T Consensus 255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~--------g~-~~v~~~~~D~~~~~~- 324 (450)
T 2yxl_A 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM--------GI-KIVKPLVKDARKAPE- 324 (450)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT--------TC-CSEEEECSCTTCCSS-
T ss_pred cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------CC-CcEEEEEcChhhcch-
Confidence 35678899999999999999998874 2268999999999999999988632 22 268999999987641
Q ss_pred cccCCCCCeeEEEec------ccccccCC--------CH----HHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQ------FAMHYSWS--------TE----ARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~------~~l~~~~~--------~~----~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.+ ++++||+|++. .++++..+ .. .....+|.++.++|||||.+++++.
T Consensus 325 -~~-~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 325 -II-GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp -SS-CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred -hh-ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 01 34689999972 22222100 00 0126789999999999999987764
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=106.14 Aligned_cols=90 Identities=19% Similarity=0.375 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+++..++......++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|+++... .+. .+++++++|
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~--------~~~-~~v~~~~~D 98 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLY--------EGY-NNLEVYEGD 98 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHH--------TTC-CCEEC----
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHH--------cCC-CceEEEECc
Confidence 45566666666778899999999999999998765 45899999999999999998752 111 468999999
Q ss_pred CcccccccccCCCCCeeEEEecccccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHY 177 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~ 177 (372)
+.+.++ .+||+|+++...+.
T Consensus 99 ~~~~~~-------~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 99 AIKTVF-------PKFDVCTANIPYKI 118 (299)
T ss_dssp CCSSCC-------CCCSEEEEECCGGG
T ss_pred hhhCCc-------ccCCEEEEcCCccc
Confidence 987654 47999999876654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.3e-11 Score=105.59 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=81.7
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.+..+|||||||+|-++..|... +...|+++|+++.|++.++.++... +....+.+.|....+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~----------g~~~~~~v~D~~~~~------ 194 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL----------NVPHRTNVADLLEDR------ 194 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT----------TCCEEEEECCTTTSC------
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----------CCCceEEEeeecccC------
Confidence 45779999999999999988776 5668999999999999999998632 334788888887654
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+.++||+|++.-++|++ ..+.....+ ++...|+|+|.+|
T Consensus 195 p~~~~DvaL~lkti~~L--e~q~kg~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 195 LDEPADVTLLLKTLPCL--ETQQRGSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp CCSCCSEEEETTCHHHH--HHHSTTHHH-HHHHHSSCSEEEE
T ss_pred CCCCcchHHHHHHHHHh--hhhhhHHHH-HHHHHhCCCCEEE
Confidence 46889999999999998 222223444 8999999999776
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=112.99 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=84.6
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--c
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~ 156 (372)
+...++.+|||+|||+|..+..++.... +.|+|+|+++.+++.+++++... +.++.++++|+.+.+ +
T Consensus 242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~----------g~~~~~~~~D~~~~~~~~ 311 (429)
T 1sqg_A 242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL----------GMKATVKQGDGRYPSQWC 311 (429)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT----------TCCCEEEECCTTCTHHHH
T ss_pred cCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc----------CCCeEEEeCchhhchhhc
Confidence 3567889999999999999999887543 68999999999999999988632 224788999998765 3
Q ss_pred ccccCCCCCeeEEEecc------cccccCC-----CHH-------HHHHHHHHHHHhcCCCcEEEEEe
Q 017369 157 DKVLADDAPFDICSCQF------AMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~------~l~~~~~-----~~~-------~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++||+|++.. ++++..+ +.. ....++.++.+.|||||++++++
T Consensus 312 -----~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst 374 (429)
T 1sqg_A 312 -----GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374 (429)
T ss_dssp -----TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 457899999632 2222110 001 12588999999999999999876
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=108.97 Aligned_cols=112 Identities=21% Similarity=0.182 Sum_probs=85.9
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.++.. +. +..+|+|+|+|+.+++.|++++.. .++..++.++++|+.+..
T Consensus 192 ~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~--------n~l~~~v~~~~~D~~~~~----- 256 (336)
T 2yx1_A 192 KVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKL--------NKLEHKIIPILSDVREVD----- 256 (336)
T ss_dssp HCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEESCGGGCC-----
T ss_pred hcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECChHHhc-----
Confidence 346789999999999999998 76 567899999999999999999864 344457999999997642
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe--CChHHHHHHHhh
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM--PDANVIIKKLRE 218 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~--~~~~~~~~~l~~ 218 (372)
++||+|++..... ...++..+.++|+|||.+++.. +......+.+.+
T Consensus 257 ---~~fD~Vi~dpP~~--------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~~ 305 (336)
T 2yx1_A 257 ---VKGNRVIMNLPKF--------AHKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEK 305 (336)
T ss_dssp ---CCEEEEEECCTTT--------GGGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHHH
T ss_pred ---CCCcEEEECCcHh--------HHHHHHHHHHHcCCCCEEEEEEeecCchHHHHHHHH
Confidence 6899999864221 2278899999999999987754 333444444444
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.7e-11 Score=115.50 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=84.4
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+...++.+|||+|||+|..+..++.. ..+.|+|+|+|+.+++.+++++.. .++. +.++++|+.+++..
T Consensus 97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r--------~G~~--v~~~~~Da~~l~~~ 166 (464)
T 3m6w_A 97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER--------WGAP--LAVTQAPPRALAEA 166 (464)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH--------HCCC--CEEECSCHHHHHHH
T ss_pred cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCe--EEEEECCHHHhhhh
Confidence 35678999999999999999998864 336899999999999999998863 2333 88899998775410
Q ss_pred cccCCCCCeeEEEecc------ccccc------CCC------HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQF------AMHYS------WST------EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~------~~~------~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..++||+|++.- ++... +.. ......+|.++.++|||||+++.++.
T Consensus 167 ----~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 167 ----FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp ----HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred ----ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 247899999631 12111 000 01237899999999999999998663
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-10 Score=107.09 Aligned_cols=122 Identities=10% Similarity=0.014 Sum_probs=94.7
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCC---------------------------------------CEEEEEeC
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------------GYYVGIDI 115 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD~ 115 (372)
.++......++..|||++||+|.++++.+.... ..++|+|+
T Consensus 185 all~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDi 264 (384)
T 3ldg_A 185 AIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDF 264 (384)
T ss_dssp HHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEES
T ss_pred HHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEEC
Confidence 344444567889999999999999988765311 35999999
Q ss_pred ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHh
Q 017369 116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195 (372)
Q Consensus 116 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~ 195 (372)
++.|++.|++++.. .++...+.+.++|+.+++. ..+||+|+++--...-.....+...+.+.+.+.
T Consensus 265 d~~al~~Ar~Na~~--------~gl~~~I~~~~~D~~~l~~------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~ 330 (384)
T 3ldg_A 265 DGRMVEIARKNARE--------VGLEDVVKLKQMRLQDFKT------NKINGVLISNPPYGERLLDDKAVDILYNEMGET 330 (384)
T ss_dssp CHHHHHHHHHHHHH--------TTCTTTEEEEECCGGGCCC------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--------cCCCCceEEEECChHHCCc------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHH
Confidence 99999999999874 4455579999999988764 358999999854332244567788888888888
Q ss_pred cCC--CcEEEEEeCChH
Q 017369 196 LRP--GGTFIGTMPDAN 210 (372)
Q Consensus 196 Lkp--gG~li~~~~~~~ 210 (372)
||+ ||.+++.+++.+
T Consensus 331 lk~~~g~~~~iit~~~~ 347 (384)
T 3ldg_A 331 FAPLKTWSQFILTNDTD 347 (384)
T ss_dssp HTTCTTSEEEEEESCTT
T ss_pred HhhCCCcEEEEEECCHH
Confidence 877 999888888775
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-10 Score=111.47 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=84.7
Q ss_pred hCC--CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 81 YAR--RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 81 ~~~--~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
.+. ++.+|||+|||+|..+..++.. +.+.|+|+|+|+.+++.+++++.. .++ .++.++++|+.+++.
T Consensus 112 ~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r--------~g~-~nv~~~~~D~~~~~~ 182 (479)
T 2frx_A 112 FADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR--------CGI-SNVALTHFDGRVFGA 182 (479)
T ss_dssp TTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH--------HTC-CSEEEECCCSTTHHH
T ss_pred CcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEeCCHHHhhh
Confidence 445 8899999999999999998875 346899999999999999998863 222 268999999987642
Q ss_pred ccccCCCCCeeEEEec------ccccccCC-----CH-------HHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 157 DKVLADDAPFDICSCQ------FAMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~------~~l~~~~~-----~~-------~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. .++.||+|++. .++....+ +. .....+|.++.++|||||++++++.
T Consensus 183 ~----~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 183 A----VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp H----STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred h----ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1 24689999983 12221100 11 1235789999999999999998763
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=110.49 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=91.2
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCC---------------------------------------CEEEEEeCC
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------------GYYVGIDIA 116 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD~s 116 (372)
++......++..|||+|||+|.++.+++.... ..|+|+|++
T Consensus 187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid 266 (385)
T 3ldu_A 187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID 266 (385)
T ss_dssp HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence 33344556788999999999999988765311 369999999
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhc
Q 017369 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL 196 (372)
Q Consensus 117 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L 196 (372)
+.|++.|+.++.. .++...+++.++|+.+++. ..+||+|+++--...-.....+...+.+.+.+.|
T Consensus 267 ~~ai~~Ar~Na~~--------~gl~~~i~~~~~D~~~l~~------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~l 332 (385)
T 3ldu_A 267 EESIDIARENAEI--------AGVDEYIEFNVGDATQFKS------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAF 332 (385)
T ss_dssp HHHHHHHHHHHHH--------HTCGGGEEEEECCGGGCCC------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------cCCCCceEEEECChhhcCc------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHH
Confidence 9999999999863 3445579999999988764 4689999997654322223356677888888888
Q ss_pred CC--CcEEEEEeCChH
Q 017369 197 RP--GGTFIGTMPDAN 210 (372)
Q Consensus 197 kp--gG~li~~~~~~~ 210 (372)
|+ ||.+.+.+++..
T Consensus 333 k~~~g~~~~iit~~~~ 348 (385)
T 3ldu_A 333 RKLKNWSYYLITSYED 348 (385)
T ss_dssp HTSBSCEEEEEESCTT
T ss_pred hhCCCCEEEEEECCHH
Confidence 77 888888887765
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=111.84 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=84.7
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|..+..++.. +.+.|+++|+|+.+++.+++++.. .++. ++.++++|+.++...
T Consensus 101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r--------~g~~-nv~v~~~Da~~l~~~ 171 (456)
T 3m4x_A 101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER--------WGVS-NAIVTNHAPAELVPH 171 (456)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH--------HTCS-SEEEECCCHHHHHHH
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-ceEEEeCCHHHhhhh
Confidence 34678999999999999999888764 346899999999999999998864 2332 688999998775411
Q ss_pred cccCCCCCeeEEEecc------ccccc------CCC------HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQF------AMHYS------WST------EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~------~~~------~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++.||+|++.- ++..- +.. ......+|.++.++|||||.++.++.
T Consensus 172 ----~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 172 ----FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp ----HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ----ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 247899999843 11110 000 01234789999999999999998663
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-11 Score=107.23 Aligned_cols=102 Identities=10% Similarity=-0.061 Sum_probs=78.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccC-CCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+.+|||||||+|..+..+++.+ .+|+++|+++.+++.|++++.... .. -..+++++.+|+.+.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~------~~~~~~rv~~~~~D~~~~------- 136 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFH------EVKNNKNFTHAKQLLDLD------- 136 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHH------HHHTCTTEEEESSGGGSC-------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhc------cccCCCeEEEEechHHHH-------
Confidence 356799999999999999888775 789999999999999987654200 00 134789999998653
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
. ++||+|++... + +..+++.+.++|+|||.+++...+
T Consensus 137 ~-~~fD~Ii~d~~-----d----p~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 137 I-KKYDLIFCLQE-----P----DIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp C-CCEEEEEESSC-----C----CHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred H-hhCCEEEECCC-----C----hHHHHHHHHHhcCCCcEEEEEcCC
Confidence 2 67999998632 1 224899999999999999986543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=109.23 Aligned_cols=123 Identities=10% Similarity=0.015 Sum_probs=90.4
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcCC---------------------------------------CEEEEEe
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------------GYYVGID 114 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD 114 (372)
..++......++..|||++||+|.++++++.... ..|+|+|
T Consensus 191 a~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD 270 (393)
T 3k0b_A 191 AALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGD 270 (393)
T ss_dssp HHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred HHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEE
Confidence 3344444566788999999999999888765321 3599999
Q ss_pred CChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 115 ~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
+++.|++.|++++.. .++...+.+.++|+.+++. ..+||+|+++--...-.....+...+.+.+.+
T Consensus 271 id~~al~~Ar~Na~~--------~gl~~~I~~~~~D~~~~~~------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~ 336 (393)
T 3k0b_A 271 IDARLIEIAKQNAVE--------AGLGDLITFRQLQVADFQT------EDEYGVVVANPPYGERLEDEEAVRQLYREMGI 336 (393)
T ss_dssp SCHHHHHHHHHHHHH--------TTCTTCSEEEECCGGGCCC------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--------cCCCCceEEEECChHhCCC------CCCCCEEEECCCCccccCCchhHHHHHHHHHH
Confidence 999999999999874 4445579999999988764 35899999984332111223456667777777
Q ss_pred hcCC--CcEEEEEeCChH
Q 017369 195 LLRP--GGTFIGTMPDAN 210 (372)
Q Consensus 195 ~Lkp--gG~li~~~~~~~ 210 (372)
.||+ ||.+++.+++.+
T Consensus 337 ~lk~~~g~~~~iit~~~~ 354 (393)
T 3k0b_A 337 VYKRMPTWSVYVLTSYEL 354 (393)
T ss_dssp HHHTCTTCEEEEEECCTT
T ss_pred HHhcCCCCEEEEEECCHH
Confidence 7766 888888887765
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=103.72 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
++++.++....+.++.+|||||||+|.++..++.. ..+|+|+|+++.|++.|++++.. ..+++++++|
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~-----------~~~v~vi~gD 104 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL-----------YNNIEIIWGD 104 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH-----------CSSEEEEESC
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc-----------CCCeEEEECc
Confidence 55677777777788999999999999999999876 45899999999999999998752 3369999999
Q ss_pred CcccccccccCCCCCeeEEEeccccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (372)
+.+.++ ++.+||+|+++...+
T Consensus 105 ~l~~~~-----~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 105 ALKVDL-----NKLDFNKVVANLPYQ 125 (295)
T ss_dssp TTTSCG-----GGSCCSEEEEECCGG
T ss_pred hhhCCc-----ccCCccEEEEeCccc
Confidence 998876 456799999886654
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.5e-10 Score=109.50 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=87.0
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc--------------CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--------------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 141 (372)
++......++.+|||+|||+|.++..+.+. ....++|+|+++.+++.|+.++.- .++.
T Consensus 163 mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l--------~g~~ 234 (445)
T 2okc_A 163 MVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--------HGIG 234 (445)
T ss_dssp HHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH--------TTCC
T ss_pred HHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH--------hCCC
Confidence 333344567789999999999998887653 224699999999999999988652 2222
Q ss_pred c-CeEEEECcCcccccccccCCCCCeeEEEecccccccCCC-------------HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 142 F-PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-------------EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 142 ~-~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-------------~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ++.+.++|....+. ..+||+|+++-.+...... ......+++.+.+.|||||++++.+|
T Consensus 235 ~~~~~i~~gD~l~~~~------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 235 TDRSPIVCEDSLEKEP------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SSCCSEEECCTTTSCC------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCEeeCCCCCCcc------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 1 56789999876553 3489999998655432111 01124789999999999999998887
Q ss_pred Ch
Q 017369 208 DA 209 (372)
Q Consensus 208 ~~ 209 (372)
+.
T Consensus 309 ~~ 310 (445)
T 2okc_A 309 DN 310 (445)
T ss_dssp HH
T ss_pred Cc
Confidence 54
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=97.78 Aligned_cols=88 Identities=9% Similarity=0.181 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+++..++......++.+|||+|||+|.++..++... .+|+|+|+|+.|++.|+++... ..+++++++|
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~-----------~~~v~~~~~D 84 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD-----------HDNFQVLNKD 84 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT-----------CCSEEEECCC
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc-----------CCCeEEEECh
Confidence 445555555556788999999999999999998765 6899999999999999998752 2369999999
Q ss_pred CcccccccccCCCCCeeEEEecccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAM 175 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l 175 (372)
+.++++. ....| .|+++...
T Consensus 85 ~~~~~~~----~~~~~-~vv~nlPy 104 (244)
T 1qam_A 85 ILQFKFP----KNQSY-KIFGNIPY 104 (244)
T ss_dssp GGGCCCC----SSCCC-EEEEECCG
T ss_pred HHhCCcc----cCCCe-EEEEeCCc
Confidence 9987762 12455 45555443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-09 Score=104.16 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+...++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++.. .++. ++.|+++|+.
T Consensus 275 ~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~--------~~~~-~v~f~~~d~~ 344 (433)
T 1uwv_A 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARL--------NGLQ-NVTFYHENLE 344 (433)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH--------TTCC-SEEEEECCTT
T ss_pred HHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHH--------cCCC-ceEEEECCHH
Confidence 344444445567889999999999999998876 56899999999999999998863 2222 7999999997
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHH
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 213 (372)
+......+ .+++||+|++.---..+ . .+++.+.+ ++|++.++++. ++..+.
T Consensus 345 ~~l~~~~~-~~~~fD~Vv~dPPr~g~----~---~~~~~l~~-~~p~~ivyvsc-~p~tla 395 (433)
T 1uwv_A 345 EDVTKQPW-AKNGFDKVLLDPARAGA----A---GVMQQIIK-LEPIRIVYVSC-NPATLA 395 (433)
T ss_dssp SCCSSSGG-GTTCCSEEEECCCTTCC----H---HHHHHHHH-HCCSEEEEEES-CHHHHH
T ss_pred HHhhhhhh-hcCCCCEEEECCCCccH----H---HHHHHHHh-cCCCeEEEEEC-ChHHHH
Confidence 72110001 34689999986543322 1 34444443 78988777664 444433
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-09 Score=103.84 Aligned_cols=110 Identities=19% Similarity=0.155 Sum_probs=81.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++.. +++. +.|+++|+.+...
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~--------ngl~--v~~~~~d~~~~~~----- 351 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEI--------NNVD--AEFEVASDREVSV----- 351 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHH--------HTCC--EEEEECCTTTCCC-----
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHH--------cCCc--EEEEECChHHcCc-----
Confidence 467889999999999999998765 45899999999999999998763 2333 8999999987532
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
..||+|++...-..+ ...+++.+. .|+|||.++++. ++..+...+.
T Consensus 352 --~~fD~Vv~dPPr~g~------~~~~~~~l~-~l~p~givyvsc-~p~tlarDl~ 397 (425)
T 2jjq_A 352 --KGFDTVIVDPPRAGL------HPRLVKRLN-REKPGVIVYVSC-NPETFARDVK 397 (425)
T ss_dssp --TTCSEEEECCCTTCS------CHHHHHHHH-HHCCSEEEEEES-CHHHHHHHHH
T ss_pred --cCCCEEEEcCCccch------HHHHHHHHH-hcCCCcEEEEEC-ChHHHHhHHh
Confidence 289999986543222 123445444 489999988876 4545544443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=97.86 Aligned_cols=90 Identities=11% Similarity=0.186 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+++..++......++.+|||||||+|.++..++... .+|+|+|+++.|++.+++++.. ..+++++++|
T Consensus 16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-----------~~~v~~i~~D 83 (255)
T 3tqs_A 16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-----------QKNITIYQND 83 (255)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-----------CTTEEEEESC
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-----------CCCcEEEEcc
Confidence 456667777778889999999999999999998764 6899999999999999998862 3479999999
Q ss_pred CcccccccccCCCCCeeEEEeccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFA 174 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~ 174 (372)
+.+.++.+.. ..++|| |+++.-
T Consensus 84 ~~~~~~~~~~-~~~~~~-vv~NlP 105 (255)
T 3tqs_A 84 ALQFDFSSVK-TDKPLR-VVGNLP 105 (255)
T ss_dssp TTTCCGGGSC-CSSCEE-EEEECC
T ss_pred hHhCCHHHhc-cCCCeE-EEecCC
Confidence 9988764322 235788 555543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5e-10 Score=108.23 Aligned_cols=103 Identities=24% Similarity=0.283 Sum_probs=76.9
Q ss_pred CCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.++.+|||+|||+|.++..++.. ...+++|+|+++.+++.| . ++.++++|+.+..
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~--------------~~~~~~~D~~~~~----- 94 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----P--------------WAEGILADFLLWE----- 94 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----T--------------TEEEEESCGGGCC-----
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----C--------------CCcEEeCChhhcC-----
Confidence 45679999999999999988764 456899999999888766 1 4889999987654
Q ss_pred CCCCCeeEEEecccccccCC--------CHHH-----------------HHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 161 ADDAPFDICSCQFAMHYSWS--------TEAR-----------------ARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~--------~~~~-----------------~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.+.||+|+++--...... ..+. ...+++.+.++|+|||.+++.+|+.
T Consensus 95 -~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 95 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred -ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 3478999999632211100 1111 2267899999999999999988864
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-11 Score=107.76 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=79.6
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++......++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++... ..+++++++|+.
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~-----------~~~v~~~~~D~~ 85 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL-----------NTRVTLIHQDIL 85 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT-----------CSEEEECCSCCT
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc-----------CCceEEEECChh
Confidence 4445555566788899999999999999998775 6899999999999888766531 346899999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHH----------H----HHHHHhcCCCcEEEEEe
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRA----------L----ANVSALLRPGGTFIGTM 206 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~----------l----~~i~~~LkpgG~li~~~ 206 (372)
++++. .+++| .|+++...+. +......+ + +.+.++|+|||.+.+.+
T Consensus 86 ~~~~~----~~~~f-~vv~n~Py~~---~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 86 QFQFP----NKQRY-KIVGNIPYHL---STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TTTCC----CSSEE-EEEEECCSSS---CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred hcCcc----cCCCc-EEEEeCCccc---cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 87751 13678 6666533221 11222222 2 55788888888765443
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.6e-10 Score=100.79 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=73.2
Q ss_pred hCCCCCEEEEecCC------ccccHHHHHH-cC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE-EECcC
Q 017369 81 YARRGDVVLDLACG------KGGDLIKWDK-AK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL-ICGDC 151 (372)
Q Consensus 81 ~~~~~~~VLDlGcG------~G~~~~~l~~-~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~D~ 151 (372)
.++++.+|||+||| +|. ..++. .+ .+.|+|+|+|+. .. ++.+ +++|+
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v~--------------~v~~~i~gD~ 115 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------VS--------------DADSTLIGDC 115 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------BC--------------SSSEEEESCG
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------CC--------------CCEEEEECcc
Confidence 45788999999994 465 22332 23 468999999996 12 3778 99999
Q ss_pred cccccccccCCCCCeeEEEeccccccc-------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCC---hHHHHHHHh
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYS-------WSTEARARRALANVSALLRPGGTFIGTMPD---ANVIIKKLR 217 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~-------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~---~~~~~~~l~ 217 (372)
.++++ .++||+|+++...+.. .........+++++.++|||||.|++.+.. ...+...++
T Consensus 116 ~~~~~------~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~ 185 (290)
T 2xyq_A 116 ATVHT------ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMG 185 (290)
T ss_dssp GGCCC------SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHT
T ss_pred ccCCc------cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHH
Confidence 87664 3689999997543210 011133568999999999999999987643 334444443
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-09 Score=97.49 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 70 ~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
.+++..++......++ +|||+|||+|.++..++..+ .+|+|+|+++.|++.+++++. ..+++++++
T Consensus 33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~------------~~~v~vi~~ 98 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLS------------GLPVRLVFQ 98 (271)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTT------------TSSEEEEES
T ss_pred HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcC------------CCCEEEEEC
Confidence 4677778888888888 99999999999999998765 589999999999999999875 237999999
Q ss_pred cCcccccccccCCCCCeeEEEeccccc
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (372)
|+.+.++.+ ...+|.|+++.-.+
T Consensus 99 D~l~~~~~~----~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 99 DALLYPWEE----VPQGSLLVANLPYH 121 (271)
T ss_dssp CGGGSCGGG----SCTTEEEEEEECSS
T ss_pred ChhhCChhh----ccCccEEEecCccc
Confidence 999887631 13689888876554
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=94.38 Aligned_cols=115 Identities=12% Similarity=0.031 Sum_probs=79.7
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|+.+..++.. +.+.|+++|+++.+++.+++++... ++ .++.++++|+.++...
T Consensus 98 l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~--------g~-~~v~~~~~D~~~~~~~ 168 (309)
T 2b9e_A 98 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA--------GV-SCCELAEEDFLAVSPS 168 (309)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT--------TC-CSEEEEECCGGGSCTT
T ss_pred hCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------CC-CeEEEEeCChHhcCcc
Confidence 35678999999999999999988774 4578999999999999999998742 22 3689999999876431
Q ss_pred cccCCCCCeeEEEecc------cccccCC----------CHH----HHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQF------AMHYSWS----------TEA----RARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~~----------~~~----~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.. ...+||.|++.- ++....+ ... ....+|..+.+.|+ ||+++.++
T Consensus 169 ~~--~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT 234 (309)
T 2b9e_A 169 DP--RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST 234 (309)
T ss_dssp CG--GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred cc--ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence 00 015799999731 2211000 111 12456778888786 99988765
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.7e-09 Score=92.38 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 70 ~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
.++++.++......++.+|||+|||+|.++..++..+..+|+|+|+++.|++.++++ . ..+++++++
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~------------~~~v~~i~~ 83 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G------------DERLEVINE 83 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C------------CTTEEEECS
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c------------CCCeEEEEc
Confidence 356667777777778999999999999999999877557899999999999999866 3 346899999
Q ss_pred cCcccccc
Q 017369 150 DCYEVHLD 157 (372)
Q Consensus 150 D~~~~~~~ 157 (372)
|+.++++.
T Consensus 84 D~~~~~~~ 91 (249)
T 3ftd_A 84 DASKFPFC 91 (249)
T ss_dssp CTTTCCGG
T ss_pred chhhCChh
Confidence 99988874
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-08 Score=97.39 Aligned_cols=112 Identities=11% Similarity=0.123 Sum_probs=80.2
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC-
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD- 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~- 162 (372)
.+.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|++++.. +++ .++.|+++|+.+..-. +..
T Consensus 213 ~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~--------ng~-~~v~~~~~d~~~~~~~--~~~~ 280 (369)
T 3bt7_A 213 SKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAA--------NHI-DNVQIIRMAAEEFTQA--MNGV 280 (369)
T ss_dssp CCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHH--------TTC-CSEEEECCCSHHHHHH--HSSC
T ss_pred CCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHH--------cCC-CceEEEECCHHHHHHH--Hhhc
Confidence 357899999999999998775 456899999999999999998863 233 3799999999764210 001
Q ss_pred ------------CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 163 ------------DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 163 ------------~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
...||+|++.---. .+...+.+.|+++|.++...-++..+...+.
T Consensus 281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~----------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~ 337 (369)
T 3bt7_A 281 REFNRLQGIDLKSYQCETIFVDPPRS----------GLDSETEKMVQAYPRILYISCNPETLCKNLE 337 (369)
T ss_dssp CCCTTGGGSCGGGCCEEEEEECCCTT----------CCCHHHHHHHTTSSEEEEEESCHHHHHHHHH
T ss_pred cccccccccccccCCCCEEEECcCcc----------ccHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence 13799998754321 1234566667789998887777766555443
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=97.34 Aligned_cols=113 Identities=15% Similarity=0.044 Sum_probs=81.3
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCccc-cc------ccCCCcCeEEEECcCcccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHH-QR------RKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~------~~~~~~~~~~~~~D~~~~~ 155 (372)
++.+|||+|||+|..+..++.. +...|+++|+++.+++.|++++....... .. ..++. ++.++++|+.+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence 6789999999999999998876 55679999999999999999886310000 00 00332 3899999997653
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.. ..+.||+|++.- . . ....++..+.+.|+|||.++++..+.
T Consensus 126 ~~----~~~~fD~I~lDP-~-~------~~~~~l~~a~~~lk~gG~l~vt~td~ 167 (378)
T 2dul_A 126 AE----RHRYFHFIDLDP-F-G------SPMEFLDTALRSAKRRGILGVTATDG 167 (378)
T ss_dssp HH----STTCEEEEEECC-S-S------CCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred Hh----ccCCCCEEEeCC-C-C------CHHHHHHHHHHhcCCCCEEEEEeecc
Confidence 21 135799999643 1 1 12478889999999999988876443
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-09 Score=94.68 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=77.4
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
+..+.....+.++.+|||||||+|+++...+.. +...++|+|++..+...... ......++..+..++
T Consensus 63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-----------~~~~g~~ii~~~~~~ 131 (277)
T 3evf_A 63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-----------VQSLGWNIITFKDKT 131 (277)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-----------CCBTTGGGEEEECSC
T ss_pred HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-----------cCcCCCCeEEEeccc
Confidence 344444556778899999999999999987764 45568899998543100000 001122455566665
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCH-HHH--HHHHHHHHHhcCCC-cEEEEEeCC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTE-ARA--RRALANVSALLRPG-GTFIGTMPD 208 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~~--~~~l~~i~~~Lkpg-G~li~~~~~ 208 (372)
....+ ++++||+|+|..+.+ .-... +.. ..+|+.+.++|+|| |.|++.+-.
T Consensus 132 dv~~l-----~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 132 DIHRL-----EPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CTTTS-----CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred eehhc-----CCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 44444 567899999988665 10001 222 23578889999999 999998876
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=104.00 Aligned_cols=127 Identities=14% Similarity=0.094 Sum_probs=88.4
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-------------------------------------------CCEE
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-------------------------------------------IGYY 110 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-------------------------------------------~~~v 110 (372)
..++......++..|||++||+|.++++.+... ...+
T Consensus 180 a~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i 259 (703)
T 3v97_A 180 AAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHF 259 (703)
T ss_dssp HHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred HHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccE
Confidence 344444455678899999999999988876421 1369
Q ss_pred EEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHH
Q 017369 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190 (372)
Q Consensus 111 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~ 190 (372)
+|+|+++.|++.|+.++.. .++...+.+.++|+.++..+ . ..++||+|+++--...-+........+.+
T Consensus 260 ~G~Did~~av~~A~~N~~~--------agv~~~i~~~~~D~~~~~~~--~-~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~ 328 (703)
T 3v97_A 260 YGSDSDARVIQRARTNARL--------AGIGELITFEVKDVAQLTNP--L-PKGPYGTVLSNPPYGERLDSEPALIALHS 328 (703)
T ss_dssp EEEESCHHHHHHHHHHHHH--------TTCGGGEEEEECCGGGCCCS--C-TTCCCCEEEECCCCCC---CCHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHH--------cCCCCceEEEECChhhCccc--c-ccCCCCEEEeCCCccccccchhHHHHHHH
Confidence 9999999999999999874 45566799999999876421 0 22389999998432211123344555555
Q ss_pred HHH---HhcCCCcEEEEEeCChHH
Q 017369 191 NVS---ALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 191 ~i~---~~LkpgG~li~~~~~~~~ 211 (372)
.+. +.+.|||.+++-+++...
T Consensus 329 ~l~~~lk~~~~g~~~~ilt~~~~l 352 (703)
T 3v97_A 329 LLGRIMKNQFGGWNLSLFSASPDL 352 (703)
T ss_dssp HHHHHHHHHCTTCEEEEEESCHHH
T ss_pred HHHHHHHhhCCCCeEEEEeCCHHH
Confidence 444 455689999999998853
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=94.52 Aligned_cols=132 Identities=12% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhCCC-----CCEEEEecCCccccHHHHHH--------c--------CCCEEEEEeCChHHHHHHHHHhcC
Q 017369 71 NWIKSVLVQLYARR-----GDVVLDLACGKGGDLIKWDK--------A--------KIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 71 ~~~k~~l~~~~~~~-----~~~VLDlGcG~G~~~~~l~~--------~--------~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
.++...+..+.... ..+|+|+|||+|..+..++. . +.-+|+..|+-.......-+.+..
T Consensus 34 ~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~ 113 (374)
T 3b5i_A 34 HLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113 (374)
T ss_dssp HHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCC
T ss_pred HHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhh
Confidence 44555555544433 57899999999998776632 0 223588888888776665555542
Q ss_pred CCccc---ccccCCCcCeEEEEC---cCcccccccccCCCCCeeEEEecccccccCCC----------------------
Q 017369 130 DADHH---QRRKKFSFPARLICG---DCYEVHLDKVLADDAPFDICSCQFAMHYSWST---------------------- 181 (372)
Q Consensus 130 ~~~~~---~~~~~~~~~~~~~~~---D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------- 181 (372)
..... ....+...+..|..+ ....-.+ ++++||+|+++.+|||+-..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlf-----P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~ 188 (374)
T 3b5i_A 114 LVSNTCMEECLAADGNRSYFVAGVPGSFYRRLF-----PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGA 188 (374)
T ss_dssp BCCCC--CCC---CCCBCSEEEEEESCTTSCCS-----CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSC
T ss_pred hhhhcchhhhccccCCCceEEEecChhhhcccC-----CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCC
Confidence 10000 000000111123332 2222223 78999999999999998311
Q ss_pred ------------HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 182 ------------EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 182 ------------~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..|+..+|+..++.|+|||.+++++.
T Consensus 189 ~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 189 GEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL 226 (374)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 12677889999999999999998875
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.7e-09 Score=99.35 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=83.8
Q ss_pred CCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC-eEEEECcCcccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYEVHLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~ 159 (372)
.++.+|||++||+|..++.++.. +..+|+++|+++.+++.++++++. +++..+ +.++++|+.+..-..
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~--------Ngl~~~~v~v~~~Da~~~l~~~- 121 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL--------NNIPEDRYEIHGMEANFFLRKE- 121 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH--------TTCCGGGEEEECSCHHHHHHSC-
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------hCCCCceEEEEeCCHHHHHHHh-
Confidence 46789999999999999998874 336799999999999999999874 344445 899999987642100
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
..+.||+|++.- +. . ...++..+.+.|+|||+++++..+..
T Consensus 122 --~~~~fD~V~lDP---~g--~---~~~~l~~a~~~Lk~gGll~~t~t~~~ 162 (392)
T 3axs_A 122 --WGFGFDYVDLDP---FG--T---PVPFIESVALSMKRGGILSLTATDTA 162 (392)
T ss_dssp --CSSCEEEEEECC---SS--C---CHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred --hCCCCcEEEECC---Cc--C---HHHHHHHHHHHhCCCCEEEEEecchh
Confidence 235799999875 21 1 23588899999999999988875544
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=94.08 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=69.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
+..++..+.+.++.+|||+|||+|.++..++... .++|+|+|+|+.|++.|+++.... +.++.++++|+
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~----------g~~v~~v~~d~ 84 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----------SDRVSLFKVSY 84 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----------TTTEEEEECCG
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc----------CCcEEEEECCH
Confidence 3445555567788999999999999999998764 468999999999999999998631 14799999999
Q ss_pred cccccc-cccCCCCCeeEEEeccc
Q 017369 152 YEVHLD-KVLADDAPFDICSCQFA 174 (372)
Q Consensus 152 ~~~~~~-~~~~~~~~fD~V~~~~~ 174 (372)
.+++.. ... ...+||.|++...
T Consensus 85 ~~l~~~l~~~-g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 85 READFLLKTL-GIEKVDGILMDLG 107 (301)
T ss_dssp GGHHHHHHHT-TCSCEEEEEEECS
T ss_pred HHHHHHHHhc-CCCCCCEEEEcCc
Confidence 876410 000 1157999998654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.7e-09 Score=102.54 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=84.6
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc----C---------------CCEEEEEeCChHHHHHHHHHhcCCCcccccccC
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA----K---------------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~----~---------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~ 139 (372)
.+.+.++.+|||+|||+|.++..+... . ...++|+|+++.+++.|+.++.- .+
T Consensus 164 ~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l--------~g 235 (541)
T 2ar0_A 164 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL--------HD 235 (541)
T ss_dssp HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT--------TT
T ss_pred HhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH--------hC
Confidence 334567889999999999998877642 1 13699999999999999988653 22
Q ss_pred CCc----CeEEEECcCcccccccccCCCCCeeEEEecccccccCCC----------HHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 140 FSF----PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST----------EARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 140 ~~~----~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----------~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
... ...+.++|....+.. ..++||+|+++--+...... ......++..+.+.|+|||++.+.
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~----~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGE----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHH----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccccccCCeEeCCCcccccc----cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 221 267889998654321 34689999998544332110 112247899999999999999888
Q ss_pred eCCh
Q 017369 206 MPDA 209 (372)
Q Consensus 206 ~~~~ 209 (372)
+|+.
T Consensus 312 ~p~~ 315 (541)
T 2ar0_A 312 VPDN 315 (541)
T ss_dssp EEHH
T ss_pred ecCc
Confidence 8765
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-08 Score=90.66 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCC---CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE
Q 017369 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI---GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (372)
Q Consensus 70 ~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (372)
.++++.++......++.+|||||||+|.++..++.... ++|+|+|+++.|++.|+++. ..++++
T Consensus 28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-------------~~~v~~ 94 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-------------GELLEL 94 (279)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-------------GGGEEE
T ss_pred HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-------------CCCcEE
Confidence 35667777777778899999999999999999987543 23999999999999999873 125899
Q ss_pred EECcCcccccccc
Q 017369 147 ICGDCYEVHLDKV 159 (372)
Q Consensus 147 ~~~D~~~~~~~~~ 159 (372)
+++|+.++++.+.
T Consensus 95 i~~D~~~~~~~~~ 107 (279)
T 3uzu_A 95 HAGDALTFDFGSI 107 (279)
T ss_dssp EESCGGGCCGGGG
T ss_pred EECChhcCChhHh
Confidence 9999999887543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=9.1e-08 Score=90.44 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=99.6
Q ss_pred CCEEEEecCCccccHHHHHHc------------------CCCEEEEEeCC-----------hHHHHHHHHHhcCCCcccc
Q 017369 85 GDVVLDLACGKGGDLIKWDKA------------------KIGYYVGIDIA-----------EGSIEDCRTRYNGDADHHQ 135 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~------------------~~~~v~gvD~s-----------~~~l~~a~~~~~~~~~~~~ 135 (372)
..+|+|+||++|..+..++.. +.-+|+..|+- +.+.+.+++...
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g------- 125 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG------- 125 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC-------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc-------
Confidence 578999999999988776543 11258888987 444444433221
Q ss_pred cccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCH---------------------------------
Q 017369 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE--------------------------------- 182 (372)
Q Consensus 136 ~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--------------------------------- 182 (372)
...+..|+.+....+ -.-+.+++++|+|+++.+|||+-.-+
T Consensus 126 ----~~~~~~f~~gvpgSF--y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Q 199 (384)
T 2efj_A 126 ----RKIGSCLIGAMPGSF--YSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQ 199 (384)
T ss_dssp ----CCTTSEEEEECCSCT--TSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHH
T ss_pred ----CCCCceEEEecchhh--hhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHH
Confidence 112345666554432 11122789999999999999972211
Q ss_pred --HHHHHHHHHHHHhcCCCcEEEEEeCChHH---------HHHHHhhh---cCCccCCeEEEEEeCchhhhcccCCCCCc
Q 017369 183 --ARARRALANVSALLRPGGTFIGTMPDANV---------IIKKLREV---EGLAIGNSVYWIRLDEEFADKKFKSSRPF 248 (372)
Q Consensus 183 --~~~~~~l~~i~~~LkpgG~li~~~~~~~~---------~~~~l~~~---~~~~~~~~~~~i~f~~~~~~~~f~~~~~~ 248 (372)
.|+..+|+..++.|+|||++++++..... ++...... .+.. +.+.
T Consensus 200 f~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli----------~~ek----------- 258 (384)
T 2efj_A 200 FTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHL----------EEEK----------- 258 (384)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSS----------CHHH-----------
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCc----------chhh-----------
Confidence 23455688889999999999998753211 22222110 1100 0000
Q ss_pred eeeEEEEecccccCceeeeehHHHHHHHHHcC-cEEEEecCh
Q 017369 249 GIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYD-LELVFVKNS 289 (372)
Q Consensus 249 g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~G-f~~v~~~~~ 289 (372)
-+..+.|.|..+.+++++++++.| |++.....+
T Consensus 259 --------~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~ 292 (384)
T 2efj_A 259 --------LDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETF 292 (384)
T ss_dssp --------HHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEE
T ss_pred --------hcccCCcccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 112345778999999999999874 777665433
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-07 Score=94.50 Aligned_cols=138 Identities=13% Similarity=0.133 Sum_probs=92.6
Q ss_pred ccccchhhhHHHHHHHHHHh-CCCCCEEEEecCCccccHHHHHHc----CCCEEEEEeCChHHHHHHHHHhcCCCccccc
Q 017369 62 PIIHLKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKA----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQR 136 (372)
Q Consensus 62 ~~~~~~~~~~~~k~~l~~~~-~~~~~~VLDlGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 136 (372)
..+..+.+...+..++.... ..++.+|||.|||+|.++..+... ....++|+|+++.++..|+.++.-
T Consensus 198 ~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l------- 270 (542)
T 3lkd_A 198 EFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL------- 270 (542)
T ss_dssp SCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH-------
T ss_pred eecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH-------
Confidence 34455555444444433111 346789999999999999887764 245799999999999999987642
Q ss_pred ccCCC-cCeEEEECcCcccccccccCCCCCeeEEEecccccccCCC-------------------HHHHHHHHHHHHHhc
Q 017369 137 RKKFS-FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-------------------EARARRALANVSALL 196 (372)
Q Consensus 137 ~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-------------------~~~~~~~l~~i~~~L 196 (372)
.+.. .++.+.++|....+++. .....||+|+++--+..-+.. ...--.++..+.+.|
T Consensus 271 -~gi~~~~~~I~~gDtL~~d~p~--~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~L 347 (542)
T 3lkd_A 271 -HGVPIENQFLHNADTLDEDWPT--QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHL 347 (542)
T ss_dssp -TTCCGGGEEEEESCTTTSCSCC--SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTB
T ss_pred -cCCCcCccceEecceecccccc--cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHh
Confidence 2332 35788999987652111 135789999997322111100 000125899999999
Q ss_pred C-CCcEEEEEeCCh
Q 017369 197 R-PGGTFIGTMPDA 209 (372)
Q Consensus 197 k-pgG~li~~~~~~ 209 (372)
+ |||++.+.+|+.
T Consensus 348 k~~gGr~a~VlP~g 361 (542)
T 3lkd_A 348 KQDNGVMAIVLPHG 361 (542)
T ss_dssp CTTTCEEEEEEETH
T ss_pred CCCceeEEEEecch
Confidence 9 999999888876
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-08 Score=91.36 Aligned_cols=91 Identities=8% Similarity=-0.005 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCE--EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEE
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGY--YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC 148 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (372)
+++..++......++.+|||+|||+|.++. +.. . .+ |+|+|+++.|++.++++... ..++++++
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~-----------~~~v~~i~ 73 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFL-----------GPKLTIYQ 73 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTT-----------GGGEEEEC
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhcc-----------CCceEEEE
Confidence 456667777777888999999999999999 643 3 46 99999999999999887642 23699999
Q ss_pred CcCcccccccccCCCCCeeEEEecccc
Q 017369 149 GDCYEVHLDKVLADDAPFDICSCQFAM 175 (372)
Q Consensus 149 ~D~~~~~~~~~~~~~~~fD~V~~~~~l 175 (372)
+|+.++++.+.....+..|.|+++...
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 74 QDAMTFNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp SCGGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred CchhhCCHHHhhcccCCceEEEECCCC
Confidence 999987763211001234677766543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.1e-09 Score=93.44 Aligned_cols=82 Identities=15% Similarity=0.014 Sum_probs=61.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCCh-------HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE-------GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~-------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
..++.+|||+|||+|.++..++.. .++|+|+|+|+ .+++.|+++... .++..+++++++|+.+.
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~--------~~~~~ri~~~~~d~~~~ 151 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPET--------QDTAARINLHFGNAAEQ 151 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHH--------HHHHTTEEEEESCHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHh--------hCCccCeEEEECCHHHH
Confidence 346789999999999999998876 45899999999 999998876542 12223599999999764
Q ss_pred -c-cccccCCC--CCeeEEEecccccc
Q 017369 155 -H-LDKVLADD--APFDICSCQFAMHY 177 (372)
Q Consensus 155 -~-~~~~~~~~--~~fD~V~~~~~l~~ 177 (372)
+ + ++ ++||+|++.-.+++
T Consensus 152 l~~~-----~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 152 MPAL-----VKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHH-----HHHHCCCSEEEECCCC--
T ss_pred HHhh-----hccCCCccEEEECCCCCC
Confidence 2 2 22 68999999766554
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-08 Score=98.54 Aligned_cols=112 Identities=15% Similarity=0.079 Sum_probs=77.7
Q ss_pred CEEEEecCCccccHHHHHHc--------C--------CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 86 DVVLDLACGKGGDLIKWDKA--------K--------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~--------~--------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
.+|||.|||+|.++...... . ...++|+|+++.++..|+.++.- .++..++.+.++
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l--------~gi~~~i~i~~g 317 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI--------RGIDFNFGKKNA 317 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH--------TTCCCBCCSSSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH--------hCCCcccceecc
Confidence 49999999999988876431 0 34799999999999999988752 233334444777
Q ss_pred cCcccccccccCCCCCeeEEEecccccc-------------------------cCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHY-------------------------SWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~-------------------------~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
|....+.. ...+||+|+++--+.. +......--.++..+.+.|+|||++.+
T Consensus 318 DtL~~~~~----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai 393 (544)
T 3khk_A 318 DSFLDDQH----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL 393 (544)
T ss_dssp CTTTSCSC----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred chhcCccc----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence 87654321 4578999999743321 100001112689999999999999998
Q ss_pred EeCCh
Q 017369 205 TMPDA 209 (372)
Q Consensus 205 ~~~~~ 209 (372)
.+|+.
T Consensus 394 VlP~g 398 (544)
T 3khk_A 394 LLANG 398 (544)
T ss_dssp EEETH
T ss_pred Eecch
Confidence 88875
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=91.08 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=75.9
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
+..+.....+.++.+|||||||+|+++...+.. +...|+|+|++..+...+.. . .....++..+..++
T Consensus 79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~----------~~~g~~ii~~~~~~ 147 (282)
T 3gcz_A 79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-R----------TTLGWNLIRFKDKT 147 (282)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C----------CBTTGGGEEEECSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-c----------ccCCCceEEeeCCc
Confidence 334444556778899999999999999987753 45569999998754222110 0 01122333444333
Q ss_pred cccccccccCCCCCeeEEEecccccccCC-CHHHH--HHHHHHHHHhcCCC--cEEEEEeCC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWS-TEARA--RRALANVSALLRPG--GTFIGTMPD 208 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~--~~~l~~i~~~Lkpg--G~li~~~~~ 208 (372)
....+ +..++|+|+|..+.+ .-. ..+.. ..+|.-+.++|+|| |.|++.+-.
T Consensus 148 dv~~l-----~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 148 DVFNM-----EVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CGGGS-----CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred chhhc-----CCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 22233 467899999988766 200 01222 23577778999999 999998876
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-08 Score=97.26 Aligned_cols=108 Identities=15% Similarity=0.014 Sum_probs=74.3
Q ss_pred CCEEEEecCCccccHHHHHHc----C----------CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 85 GDVVLDLACGKGGDLIKWDKA----K----------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~----~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..|||+|||+|.++...+.+ + ..+|++||.|+.++..++.+.. +++...++++.+|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~---------Ng~~d~VtVI~gd 480 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV---------RTWKRRVTIIESD 480 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH---------HTTTTCSEEEESC
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh---------cCCCCeEEEEeCc
Confidence 468999999999886432221 1 2379999999987766665554 4567789999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+++..++......+++|+|++-..= ++... +-...+|..+.+.|||||.++
T Consensus 481 ~eev~lp~~~~~~ekVDIIVSElmG-sfl~n-EL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 481 MRSLPGIAKDRGFEQPDIIVSELLG-SFGDN-ELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp GGGHHHHHHHTTCCCCSEEEECCCB-TTBGG-GSHHHHHHTTGGGSCTTCEEE
T ss_pred hhhcccccccCCCCcccEEEEeccc-cccch-hccHHHHHHHHHhCCCCcEEE
Confidence 9987651000015789999986532 21111 223457777889999999887
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=95.39 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=73.4
Q ss_pred CCCEEEEecCCccccHHHHHH---cCCC--EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDK---AKIG--YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~---~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....|||+|||+|.+....+. .... +|++||-|+ |...|++.... +++..+|+++++|+++..+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~--------N~~~dkVtVI~gd~eev~L-- 425 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQF--------EEWGSQVTVVSSDMREWVA-- 425 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHH--------HTTGGGEEEEESCTTTCCC--
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHh--------ccCCCeEEEEeCcceeccC--
Confidence 345899999999987444433 2333 689999997 55566666543 5678899999999999876
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
++++|+|++-..= ++...+ .....+....+.|||||.++
T Consensus 426 ----PEKVDIIVSEwMG-~fLl~E-~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 426 ----PEKADIIVSELLG-SFADNE-LSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ----SSCEEEEECCCCB-TTBGGG-CHHHHHHHHGGGEEEEEEEE
T ss_pred ----CcccCEEEEEcCc-cccccc-CCHHHHHHHHHhcCCCcEEc
Confidence 4789999985321 111112 23367888889999999986
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.5e-07 Score=76.67 Aligned_cols=104 Identities=8% Similarity=-0.001 Sum_probs=72.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC--CcCeEEEECcCcccc-----
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--SFPARLICGDCYEVH----- 155 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~----- 155 (372)
.+..+|||+||| .-+..+++...++|+.+|.+++..+.|++.+.. .++ ..++.++.+|+.+..
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~--------~g~~~~~~I~~~~gda~~~~~wg~p 98 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAA--------NPPAEGTEVNIVWTDIGPTGDWGHP 98 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHH--------SCCCTTCEEEEEECCCSSBCGGGCB
T ss_pred hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCCCCceEEEEeCchhhhccccc
Confidence 356799999995 344444443357999999999999999998874 444 557999999976431
Q ss_pred --------ccc----c--cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 --------LDK----V--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 --------~~~----~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.. . ....++||+|++..... ...+..+.+.|+|||++++.
T Consensus 99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~---------~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR---------VGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp SSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH---------HHHHHHHHHHCSSCEEEEET
T ss_pred ccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc---------hhHHHHHHHhcCCCeEEEEe
Confidence 100 0 10237899999876421 24556677999999999764
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.3e-07 Score=90.68 Aligned_cols=119 Identities=17% Similarity=0.061 Sum_probs=77.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcC----CCEEEEEeCChHHHHHHHHH--hcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
.++.+|||+|||+|.++..++... ...++|+|+++.+++.|+.+ +...... .+. ....+...|+.....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Ll----hGi-~~~~I~~dD~L~~~~ 394 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLV----SSN-NAPTITGEDVCSLNP 394 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTC----BTT-BCCEEECCCGGGCCG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhh----cCC-CcceEEecchhcccc
Confidence 357899999999999999887643 24699999999999999443 3210000 111 123455556554221
Q ss_pred ccccCCCCCeeEEEecccccccCCCHH-------------------------HHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEA-------------------------RARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~-------------------------~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
. ....||+|+++--......... -...++..+.+.|+|||++.+.+|+.-
T Consensus 395 ~----~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 395 E----DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp G----GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred c----ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 1 3468999999754311011111 133578889999999999999998763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=84.83 Aligned_cols=112 Identities=17% Similarity=0.227 Sum_probs=83.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+...+||-||.|.|..+.++++.. ..+|+.|||++.+++.|++.+...... .--..+++++.+|+...--.
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~----~~~dpRv~v~~~Dg~~~l~~--- 153 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAG----SYDDPRFKLVIDDGVNFVNQ--- 153 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTT----GGGCTTEEEEESCTTTTTSC---
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcccccc----ccCCCcEEEEechHHHHHhh---
Confidence 3456799999999999999998764 568999999999999999876421000 11146899999999864321
Q ss_pred CCCCCeeEEEecccc-----cccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..++||+|+....- ..+++ ..+++.+.++|+|||+++...
T Consensus 154 -~~~~yDvIi~D~~dp~~~~~~L~t-----~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 154 -TSQTFDVIISDCTDPIGPGESLFT-----SAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp -SSCCEEEEEESCCCCCCTTCCSSC-----CHHHHHHHHTEEEEEEEEEEE
T ss_pred -ccccCCEEEEeCCCcCCCchhhcC-----HHHHHHHHHHhCCCCEEEEec
Confidence 45789999986421 12222 368999999999999999754
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-07 Score=86.96 Aligned_cols=110 Identities=11% Similarity=0.053 Sum_probs=78.9
Q ss_pred CCEEEEecCCccccHHHHHHc----------------C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEE
Q 017369 85 GDVVLDLACGKGGDLIKWDKA----------------K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~----------------~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 147 (372)
..+|+|+||++|..+..+... . .-+|+..|+..+....+-+.+.... . ..+..|+
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~------~--~~~~~f~ 123 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN------D--VDGVCFI 123 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC------S--CTTCEEE
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc------c--cCCCEEE
Confidence 468999999999876654432 1 1258899999999988887765311 0 0023455
Q ss_pred ECcCc---ccccccccCCCCCeeEEEecccccccCCC-----------------------------HHHHHHHHHHHHHh
Q 017369 148 CGDCY---EVHLDKVLADDAPFDICSCQFAMHYSWST-----------------------------EARARRALANVSAL 195 (372)
Q Consensus 148 ~~D~~---~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-----------------------------~~~~~~~l~~i~~~ 195 (372)
.+... ...+ +++++|+|+++.++||+-.. ..|+..+|+..++.
T Consensus 124 ~gvpgSFy~rlf-----p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~E 198 (359)
T 1m6e_X 124 NGVPGSFYGRLF-----PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQE 198 (359)
T ss_dssp EEEESCSSSCCS-----CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhhhccC-----CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 2333 78999999999999997221 24678889999999
Q ss_pred cCCCcEEEEEeC
Q 017369 196 LRPGGTFIGTMP 207 (372)
Q Consensus 196 LkpgG~li~~~~ 207 (372)
|+|||.+++++.
T Consensus 199 L~pGG~mvl~~~ 210 (359)
T 1m6e_X 199 VVPGGRMVLTIL 210 (359)
T ss_dssp BCTTCEEEEEEE
T ss_pred hcCCceEEEEEe
Confidence 999999998874
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.8e-08 Score=91.08 Aligned_cols=79 Identities=20% Similarity=0.114 Sum_probs=60.7
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-ccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~ 161 (372)
.++.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.|++++.... .++ .+++++++|+.+. +..
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~------~gl-~~i~~i~~Da~~~L~~~---- 159 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLL------NEG-KDVNILTGDFKEYLPLI---- 159 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHS------CTT-CEEEEEESCGGGSHHHH----
T ss_pred CCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhc------cCC-CcEEEEECcHHHhhhhc----
Confidence 35899999999999999887655 4589999999999999999886310 023 4699999999863 210
Q ss_pred CCCCeeEEEecc
Q 017369 162 DDAPFDICSCQF 173 (372)
Q Consensus 162 ~~~~fD~V~~~~ 173 (372)
++++||+|++.-
T Consensus 160 ~~~~fDvV~lDP 171 (410)
T 3ll7_A 160 KTFHPDYIYVDP 171 (410)
T ss_dssp HHHCCSEEEECC
T ss_pred cCCCceEEEECC
Confidence 135899999963
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.42 E-value=8e-07 Score=79.86 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=69.1
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+.+.++..+||.+||.|+++..++.. .++|+|+|.++.+++.|++ +.. .++.++++++.
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~------------~rv~lv~~~f~ 76 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL------------PGLTVVQGNFR 76 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC------------TTEEEEESCGG
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc------------CCEEEEECCcc
Confidence 555667777888999999999999999999987 5699999999999999998 651 37999999998
Q ss_pred ccccc-cccCCCCCeeEEEecccc
Q 017369 153 EVHLD-KVLADDAPFDICSCQFAM 175 (372)
Q Consensus 153 ~~~~~-~~~~~~~~fD~V~~~~~l 175 (372)
+++.. ... ..+++|.|++...+
T Consensus 77 ~l~~~L~~~-g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 77 HLKRHLAAL-GVERVDGILADLGV 99 (285)
T ss_dssp GHHHHHHHT-TCSCEEEEEEECSC
T ss_pred hHHHHHHHc-CCCCcCEEEeCCcc
Confidence 76421 001 22579999976543
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.3e-07 Score=81.09 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=72.0
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
.+.....+.++.+||||||++|+++..++.. +...|+|+|+...+...... . .....++..+..++..
T Consensus 72 ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~----------~~~~~~iv~~~~~~di 140 (300)
T 3eld_A 72 WLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-M----------QTLGWNIVKFKDKSNV 140 (300)
T ss_dssp HHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C----------CBTTGGGEEEECSCCT
T ss_pred HHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-c----------cccCCceEEeecCcee
Confidence 3334444578899999999999999999864 45569999997643110000 0 0011123323322222
Q ss_pred cccccccCCCCCeeEEEecccccccCC-CHHH--HHHHHHHHHHhcCCC-cEEEEEeCC
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWS-TEAR--ARRALANVSALLRPG-GTFIGTMPD 208 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~--~~~~l~~i~~~Lkpg-G~li~~~~~ 208 (372)
..+ ...++|+|+|..+-+ .-. ..+. ...+|.-+..+|+|| |.|++.+-.
T Consensus 141 ~~l-----~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 141 FTM-----PTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp TTS-----CCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred eec-----CCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 222 457899999987765 200 0111 134577778999999 999998876
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=77.21 Aligned_cols=117 Identities=15% Similarity=0.067 Sum_probs=68.2
Q ss_pred CCCCEEEEecCCccccHHHHHHc-------CC------CEEEEEeCCh---HHHH-----------HHHHHhcCCCc---
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-------KI------GYYVGIDIAE---GSIE-----------DCRTRYNGDAD--- 132 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-------~~------~~v~gvD~s~---~~l~-----------~a~~~~~~~~~--- 132 (372)
.+..+|||+|||+|..+..++.. .+ .+|+++|..+ +++. .|++.......
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 45679999999999977664432 22 3799999877 5555 34444321000
Q ss_pred cccc--ccCCCcCeEEEECcCccc-ccccccCCCCCeeEEEecc-cccccCCCHHH--HHHHHHHHHHhcCCCcEEEE
Q 017369 133 HHQR--RKKFSFPARLICGDCYEV-HLDKVLADDAPFDICSCQF-AMHYSWSTEAR--ARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 133 ~~~~--~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~--~~~~l~~i~~~LkpgG~li~ 204 (372)
...+ -..-..+++++.+|+.+. +..... ....||+|+... +-.-. .+ -..+|..+.++|+|||+|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~-~~~~~D~iflD~fsp~~~----p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDS-LNQKVDAWFLDGFAPAKN----PDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGG-GTTCEEEEEECSSCTTTC----GGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccc-cCCeEEEEEECCCCcccC----hhhcCHHHHHHHHHHcCCCcEEEE
Confidence 0000 000124678899998763 321000 013799999853 21100 01 24789999999999999873
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=9.5e-07 Score=77.69 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=72.5
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC---eEEEEC-c
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP---ARLICG-D 150 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~-D 150 (372)
+.....++|+.+||||||+.|+++...+.. +.+.|.|.++.... . ... ....... +.|+++ |
T Consensus 65 IdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P-------~~~~~~Gv~~i~~~~G~D 131 (269)
T 2px2_A 65 LVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEP-------MLMQSYGWNIVTMKSGVD 131 (269)
T ss_dssp HHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCC-------CCCCSTTGGGEEEECSCC
T ss_pred HHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCC-------CcccCCCceEEEeeccCC
Confidence 333446789999999999999999988764 13334455544320 0 000 0000012 355557 9
Q ss_pred CcccccccccCCCCCeeEEEecccccccCC-CHHHH--HHHHHHHHHhcCCCc-EEEEEeCCh--HHHHH---HHhh
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWS-TEARA--RRALANVSALLRPGG-TFIGTMPDA--NVIIK---KLRE 218 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~--~~~l~~i~~~LkpgG-~li~~~~~~--~~~~~---~l~~ 218 (372)
+.++ ...++|+|+|..+-. .-. ..+.. ..+|.-+.+.|+||| .|++-+-.+ ..+.+ .++.
T Consensus 132 f~~~-------~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~ 200 (269)
T 2px2_A 132 VFYK-------PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQR 200 (269)
T ss_dssp GGGS-------CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ccCC-------CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHH
Confidence 8763 346899999987443 100 11111 125777779999999 999887665 44533 5554
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.8e-06 Score=79.76 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=84.3
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.+.+.+|.+|||+|+|.|+=+..++.... +.|+++|+++.-++..++++...+.. ......++.+.+.|...++..
T Consensus 143 ~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~---~~~~~~~v~v~~~D~~~~~~~ 219 (359)
T 4fzv_A 143 ALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPE---EIRDGNQVRVTSWDGRKWGEL 219 (359)
T ss_dssp HHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCT---TTTTSSSEEEECCCGGGHHHH
T ss_pred HhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhh---hhccCCceEEEeCchhhcchh
Confidence 34678999999999999998888877543 46999999999998888877532211 011235788888898765421
Q ss_pred cccCCCCCeeEEEeccc--------cc------ccCCCHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQFA--------MH------YSWSTEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~--------l~------~~~~~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+.||.|++.-- +. +-+ +.. -..++|.++.+.|||||+++.+|-
T Consensus 220 ----~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~-~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC 285 (359)
T 4fzv_A 220 ----EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRS-RKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC 285 (359)
T ss_dssp ----STTCEEEEEEECCCCCHHHHTTCCTTCTTSGG-GHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ----ccccCCEEEECCccCCCCCcccccChhhhhhC-CHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence 3578999997421 10 100 111 235788999999999999987763
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-05 Score=75.73 Aligned_cols=121 Identities=20% Similarity=0.176 Sum_probs=81.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+..+||-||.|.|..+.++++.+..+|+.|||++.+++.|++.+......... ..-..+++++.+|+...-- .....
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d-~pr~~rv~vii~Da~~fl~-~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLD-NLKGDCYQVLIEDCIPVLK-RYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCS-SSEETTEEEEESCHHHHHH-HHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhc-cccccceeeehHHHHHHHH-hhhhc
Confidence 356899999999999999999877778999999999999999986532110000 0112458899999865321 00002
Q ss_pred CCCeeEEEeccccccc------CCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 163 DAPFDICSCQFAMHYS------WSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~------~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.++||+|+....-... .....--+.+++.+.++|+|||+++..
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4689999986421110 001122367899999999999999864
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.9e-06 Score=72.49 Aligned_cols=125 Identities=19% Similarity=0.262 Sum_probs=79.5
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEEC-
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICG- 149 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~- 149 (372)
+..+.....+.++.+||||||++|+++...+.. +...|+|+|+...--+. +... ..+. ..+.++.+
T Consensus 83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~---------P~~~--~ql~w~lV~~~~~~ 151 (321)
T 3lkz_A 83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE---------PQLV--QSYGWNIVTMKSGV 151 (321)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC---------CCCC--CBTTGGGEEEECSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC---------cchh--hhcCCcceEEEecc
Confidence 444555556788899999999999999977664 44469999997631100 0000 0111 23777777
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHH---HHHHHHHHHhcCCC-cEEEEEeCCh--HHHHHHH
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA---RRALANVSALLRPG-GTFIGTMPDA--NVIIKKL 216 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~---~~~l~~i~~~Lkpg-G~li~~~~~~--~~~~~~l 216 (372)
|+..++ ..++|+|+|..+ .-.....-+. ..+|+-+.+.|++| |-|++-+.++ ..+++.+
T Consensus 152 Dv~~l~-------~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l 216 (321)
T 3lkz_A 152 DVFYRP-------SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKM 216 (321)
T ss_dssp CTTSSC-------CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHH
T ss_pred CHhhCC-------CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHH
Confidence 776554 367999999876 3221111122 33677778899999 8999988766 4444433
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1e-06 Score=78.97 Aligned_cols=123 Identities=9% Similarity=-0.034 Sum_probs=72.8
Q ss_pred hCCCC--CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccC-CCcCeEEEECcCcccccc
Q 017369 81 YARRG--DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVHLD 157 (372)
Q Consensus 81 ~~~~~--~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~ 157 (372)
.+.++ .+|||+|||+|.++..++..+. +|+++|+++.+.+.+++.+...... ....+ +..+++++++|+.+.--
T Consensus 83 ~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~-~~~~~~l~~~i~~~~~D~~~~L~- 159 (258)
T 2oyr_A 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYAD-AEIGGWLQERLQLIHASSLTALT- 159 (258)
T ss_dssp TCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHC-TTTHHHHHHHEEEEESCHHHHST-
T ss_pred cccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhh-HhhhhhhhcCEEEEECCHHHHHH-
Confidence 34566 8999999999999999987754 7999999998766665554311000 00011 12369999999876311
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
. ....||+|++.-...+- .. ..++++..+.|++.+ ...++...+++...
T Consensus 160 -~--~~~~fDvV~lDP~y~~~--~~---saavkk~~~~lr~l~---~~~~~~~~ll~~a~ 208 (258)
T 2oyr_A 160 -D--ITPRPQVVYLDPMFPHK--QK---SALVKKEMRVFQSLV---GPDLDADGLLEPAR 208 (258)
T ss_dssp -T--CSSCCSEEEECCCCCCC--CC--------HHHHHHHHHS---CCCTTGGGGHHHHH
T ss_pred -h--CcccCCEEEEcCCCCCc--cc---chHHHHHHHHHHHhh---cCCccHHHHHHHHH
Confidence 0 12469999998776542 11 133344444444432 12455555555443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=7.4e-06 Score=76.50 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=66.4
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+.+|.+|||+||++|+++..++..+ +.|+|||+.+ |-... .. ..++.++++|+.....
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~-l~~~l---~~------------~~~V~~~~~d~~~~~~---- 266 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGP-MAQSL---MD------------TGQVTWLREDGFKFRP---- 266 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSC-CCHHH---HT------------TTCEEEECSCTTTCCC----
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhh-cChhh---cc------------CCCeEEEeCccccccC----
Confidence 35789999999999999999998765 4999999875 21111 11 3469999999987664
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~ 201 (372)
+..+||+|+|.++... ......+..+...+..++.
T Consensus 267 -~~~~~D~vvsDm~~~p-----~~~~~l~~~wl~~~~~~~a 301 (375)
T 4auk_A 267 -TRSNISWMVCDMVEKP-----AKVAALMAQWLVNGWCRET 301 (375)
T ss_dssp -CSSCEEEEEECCSSCH-----HHHHHHHHHHHHTTSCSEE
T ss_pred -CCCCcCEEEEcCCCCh-----HHhHHHHHHHHhccccceE
Confidence 4578999999887742 3444455555444444443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-05 Score=68.24 Aligned_cols=118 Identities=18% Similarity=0.194 Sum_probs=75.1
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC-c
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-D 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-D 150 (372)
+..+.....+.++.+||||||++|+++...+.. +...|+|+|+-..--+.-+ ..+. .+ ...++|.++ |
T Consensus 67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s--------~g-wn~v~fk~gvD 136 (267)
T 3p8z_A 67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMST--------YG-WNIVKLMSGKD 136 (267)
T ss_dssp HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCC--------TT-TTSEEEECSCC
T ss_pred HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhh--------cC-cCceEEEeccc
Confidence 344445556789999999999999999977664 4456999999763210000 0000 01 146899998 8
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHH---HHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA---RRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~---~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+..++ ..++|+|+|..+=..- ...-+. ..+|+-+.+.|++ |-|++-+.++
T Consensus 137 v~~~~-------~~~~DtllcDIgeSs~-~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 137 VFYLP-------PEKCDTLLCDIGESSP-SPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp GGGCC-------CCCCSEEEECCCCCCS-CHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred eeecC-------CccccEEEEecCCCCC-ChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 75443 3679999997654211 111122 3367777899998 7888777544
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.8e-06 Score=81.44 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=87.5
Q ss_pred CccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--------------CCCEEEEEeCChHHHHHHHHH
Q 017369 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------------KIGYYVGIDIAEGSIEDCRTR 126 (372)
Q Consensus 61 s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--------------~~~~v~gvD~s~~~l~~a~~~ 126 (372)
...+..+.+... ++..+.+.++.+|+|.+||+|+++....+. ....++|+|+++.+...|+-+
T Consensus 197 GqfyTP~~Vv~l---mv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN 273 (530)
T 3ufb_A 197 GEFYTPRPVVRF---MVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN 273 (530)
T ss_dssp CCCCCCHHHHHH---HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred ceECCcHHHHHH---HHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 345555655443 334445677889999999999998776541 123599999999999999876
Q ss_pred hcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccC------------CCHHHHHHHHHHHHH
Q 017369 127 YNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW------------STEARARRALANVSA 194 (372)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~------------~~~~~~~~~l~~i~~ 194 (372)
+-- ++.. ...+.++|....+..... ....||+|+++--+.--+ .....-..++..+.+
T Consensus 274 l~l--------hg~~-~~~I~~~dtL~~~~~~~~-~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~ 343 (530)
T 3ufb_A 274 LLL--------HGLE-YPRIDPENSLRFPLREMG-DKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMR 343 (530)
T ss_dssp HHH--------HTCS-CCEEECSCTTCSCGGGCC-GGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHH
T ss_pred HHh--------cCCc-cccccccccccCchhhhc-ccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHH
Confidence 541 1211 245677887655432221 235799999975332110 011122356777888
Q ss_pred hcC-------CCcEEEEEeCCh
Q 017369 195 LLR-------PGGTFIGTMPDA 209 (372)
Q Consensus 195 ~Lk-------pgG~li~~~~~~ 209 (372)
.|| |||++.+.+|++
T Consensus 344 ~Lk~~~~~l~~gGr~avVlP~g 365 (530)
T 3ufb_A 344 KLKRPGHGSDNGGRAAVVVPNG 365 (530)
T ss_dssp HBCCTTSSSSSCCEEEEEEEHH
T ss_pred HhhhhhhccCCCceEEEEecch
Confidence 886 799999888864
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.7e-05 Score=68.93 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCEEEEecCCccccHHHHHHc------CCCEEEEEeCChH--------------------------HHHHHHHHhcCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEG--------------------------SIEDCRTRYNGDA 131 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~------~~~~v~gvD~s~~--------------------------~l~~a~~~~~~~~ 131 (372)
....|||+||..|..+..++.. ..++|+++|..+. .++.+++++..
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~-- 183 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN-- 183 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH--
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH--
Confidence 4569999999999977766542 2557999996432 35667777764
Q ss_pred cccccccCC-CcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 132 DHHQRRKKF-SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 132 ~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++ ..+++++.+|+.+.- +. . +.++||+|+..... | +.....|+.+...|+|||++++.-.
T Consensus 184 ------~gl~~~~I~li~Gda~etL-~~-~-~~~~~d~vfIDaD~-y-----~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 184 ------YDLLDEQVRFLPGWFKDTL-PT-A-PIDTLAVLRMDGDL-Y-----ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp ------TTCCSTTEEEEESCHHHHS-TT-C-CCCCEEEEEECCCS-H-----HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred ------cCCCcCceEEEEeCHHHHH-hh-C-CCCCEEEEEEcCCc-c-----ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 344 368999999996532 11 1 34689999987654 2 4456889999999999999988654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00098 Score=61.89 Aligned_cols=120 Identities=14% Similarity=0.101 Sum_probs=81.4
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccc-------cc-----cCCCcCeEEEEC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQ-------RR-----KKFSFPARLICG 149 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~ 149 (372)
.+...|+.||||.......+... ....++-||. |++++.-++.+........ .. .-...+..++.+
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 46689999999999888887654 3446778887 7787777666653210000 00 001256889999
Q ss_pred cCcccccc----cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE-EEe
Q 017369 150 DCYEVHLD----KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-GTM 206 (372)
Q Consensus 150 D~~~~~~~----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li-~~~ 206 (372)
|+.+.... ..........++++-.++.|+ +++....+++.+.... |+|.++ +..
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL--~~~~~~~ll~~ia~~~-~~~~~v~~e~ 233 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYM--HNNESQLLINTIMSKF-SHGLWISYDP 233 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC--CHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence 99875431 111123567899999999999 7889999999999988 677654 443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.6e-05 Score=61.89 Aligned_cols=88 Identities=15% Similarity=0.019 Sum_probs=58.1
Q ss_pred CCCCEEEEecCCccc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||.|. .+..+++.....|+++|+++.+++ +++.|+.+..+.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~------------------------~v~dDiF~P~~~---- 85 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG------------------------IVRDDITSPRME---- 85 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT------------------------EECCCSSSCCHH----
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc------------------------eEEccCCCCccc----
Confidence 456799999999994 777777534447999999984322 688898874431
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.-..||+|.+..- +.++...+.++++.. |.-+++..-
T Consensus 86 ~Y~~~DLIYsirP-------P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 86 IYRGAALIYSIRP-------PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp HHTTEEEEEEESC-------CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred ccCCcCEEEEcCC-------CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 0148999965432 244556666666654 445666543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.72 E-value=6.1e-05 Score=69.02 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
++.++ .....++..|||++||+|..+..++..+ .+++|+|+++.+++.|++++.
T Consensus 225 ~~~~i-~~~~~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 225 AERLV-RMFSFVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp HHHHH-HHHCCTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHH-HHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHH
Confidence 33343 3444789999999999999998887654 489999999999999999986
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00012 Score=67.40 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=66.7
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
++.++..+.+.++..++|..||.|+++..++.. ..++|+|+|.++.+++.|+ ++. ..++.+++++
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~------------~~Rv~lv~~n 112 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID------------DPRFSIIHGP 112 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC------------CTTEEEEESC
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc------------CCcEEEEeCC
Confidence 455667777889999999999999999999875 3568999999999999984 442 3478999999
Q ss_pred Ccccccc-cccCCCCCeeEEEecccc
Q 017369 151 CYEVHLD-KVLADDAPFDICSCQFAM 175 (372)
Q Consensus 151 ~~~~~~~-~~~~~~~~fD~V~~~~~l 175 (372)
..++.-. ....-.+++|.|+....+
T Consensus 113 F~~l~~~L~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 113 FSALGEYVAERDLIGKIDGILLDLGV 138 (347)
T ss_dssp GGGHHHHHHHTTCTTCEEEEEEECSC
T ss_pred HHHHHHHHHhcCCCCcccEEEECCcc
Confidence 8775310 000011369999887544
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00021 Score=63.95 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=64.6
Q ss_pred CCCCCEEEEecC------CccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 82 ARRGDVVLDLAC------GKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 82 ~~~~~~VLDlGc------G~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.+.+.+|||+|+ -.|.....-. .+. +.|+++|+.+-. . ... .++++|+...
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~VLr~~-~p~g~~VVavDL~~~~-------------------s-da~-~~IqGD~~~~ 164 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAVLRQW-LPTGTLLVDSDLNDFV-------------------S-DAD-STLIGDCATV 164 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHHHHHH-SCTTCEEEEEESSCCB-------------------C-SSS-EEEESCGGGE
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHHHHHh-CCCCcEEEEeeCcccc-------------------c-CCC-eEEEcccccc
Confidence 456899999996 5666432221 232 489999997611 0 112 5599998764
Q ss_pred ccccccCCCCCeeEEEeccccccc--C-----CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYS--W-----STEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~--~-----~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
. ..++||+|++.++-.-. . .+..-.+.++.-+.+.|+|||.|++-+-.+
T Consensus 165 ~------~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 165 H------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp E------ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred c------cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 4 24789999997532110 0 011236677888889999999999877443
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0026 Score=58.43 Aligned_cols=115 Identities=12% Similarity=-0.002 Sum_probs=79.2
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc----
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL---- 160 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---- 160 (372)
...|++||||-=.-...+.......++=+| -|..++..++.+.+.+. ....+..++.+|+.+ .+...+
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~------~~~~~~~~v~~Dl~d-~~~~~l~~~g 174 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGV------TPTADRREVPIDLRQ-DWPPALRSAG 174 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTC------CCSSEEEEEECCTTS-CHHHHHHHTT
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCC------CCCCCeEEEecchHh-hHHHHHHhcc
Confidence 357999999874443333211224788999 58899888888753111 113467889999987 332111
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
......-++++-.+++|+ +.++...+++.+...+.||+.++++....
T Consensus 175 ~d~~~Pt~~i~Egvl~Yl--~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 175 FDPSARTAWLAEGLLMYL--PATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp CCTTSCEEEEECSCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCCCCCEEEEEechHhhC--CHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 122445678888899998 66889999999999999999999887543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00065 Score=60.80 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=43.4
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
+.....++..|||+.||+|..+......+ .+++|+|+++.+++.|++|+..
T Consensus 206 i~~~~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 206 IRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp HHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC
T ss_pred HHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHh
Confidence 44456789999999999999888876654 4899999999999999999863
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0002 Score=82.91 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=54.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcC------CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-c
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H 155 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~ 155 (372)
.+..+|||+|.|+|..+..++..- ...|+.+|+|+...+.|++++.. ..+..-..|..+. +
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~------------~di~~~~~d~~~~~~ 1306 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ------------LHVTQGQWDPANPAP 1306 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH------------HTEEEECCCSSCCCC
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh------------ccccccccccccccc
Confidence 467899999999998766654421 23699999999888888777641 1232222233221 1
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+ ....||+|++..++|-. .+....|.++.++|||||++++..+
T Consensus 1307 ~-----~~~~ydlvia~~vl~~t----~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1307 G-----SLGKADLLVCNCALATL----GDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp ----------CCEEEEECC------------------------CCEEEEEEC
T ss_pred C-----CCCceeEEEEccccccc----ccHHHHHHHHHHhcCCCcEEEEEec
Confidence 1 23579999999999743 5778899999999999999887543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.002 Score=60.09 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCC------CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 72 WIKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 72 ~~k~~l~~~~~~------~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
.+..++....+. ++..|||||.|.|.++..++.. ...+|+++|+++.++...++... ..++
T Consensus 40 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~------------~~~l 107 (353)
T 1i4w_A 40 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------------GSPL 107 (353)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------------TSSC
T ss_pred HHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc------------CCCE
Confidence 344455444443 3589999999999999999875 45689999999999998887652 2368
Q ss_pred EEEECcCcccc
Q 017369 145 RLICGDCYEVH 155 (372)
Q Consensus 145 ~~~~~D~~~~~ 155 (372)
+++.+|+.+..
T Consensus 108 ~ii~~D~l~~~ 118 (353)
T 1i4w_A 108 QILKRDPYDWS 118 (353)
T ss_dssp EEECSCTTCHH
T ss_pred EEEECCccchh
Confidence 99999997654
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0024 Score=57.34 Aligned_cols=107 Identities=7% Similarity=-0.130 Sum_probs=76.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+..+||+-+|+|.++.++++ +..+++.+|.++..++..++++.. ..++.++..|....- .....+.
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~-----------~~~~~V~~~D~~~~L-~~l~~~~ 157 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF-----------NKKVYVNHTDGVSKL-NALLPPP 157 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT-----------TSCEEEECSCHHHHH-HHHCSCT
T ss_pred cCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc-----------CCcEEEEeCcHHHHH-HHhcCCC
Confidence 356789999999999999987 447899999999999988877652 346899999975421 1111134
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHH--hcCCCcEEEEEeC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMP 207 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~li~~~~ 207 (372)
.+||+|++.--... ..+...++..+.+ .+.|+|.+++=-|
T Consensus 158 ~~fdLVfiDPPYe~----k~~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 158 EKRGLIFIDPSYER----KEEYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp TSCEEEEECCCCCS----TTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCccEEEECCCCCC----CcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 57999998765542 1356666766665 4568998776443
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.5 Score=43.52 Aligned_cols=207 Identities=11% Similarity=-0.005 Sum_probs=112.2
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCccc-----------cccc---CCCcCeEEE
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHH-----------QRRK---KFSFPARLI 147 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----------~~~~---~~~~~~~~~ 147 (372)
+...|+-||||-=.....+... ....++=||. |+.++.=++.+....... .... -...+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4679999999986555555443 2335667776 444443333332100000 0000 013467889
Q ss_pred ECcCcccc-cccc----cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH-HHHHHHhhhcC
Q 017369 148 CGDCYEVH-LDKV----LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN-VIIKKLREVEG 221 (372)
Q Consensus 148 ~~D~~~~~-~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~-~~~~~l~~~~~ 221 (372)
..|+.+.. +... .......-++++-.++.|+ +++....+|+.+.....+|..++....++. ..-..+.+...
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL--~~~~~~~ll~~ia~~f~~~~~i~yE~i~p~d~fg~~M~~~l~ 246 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM--TPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLR 246 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHCSSEEEEEEEECCTTSHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC--CHHHHHHHHHHHHHhCCCceEEEEeccCCCCHHHHHHHHHHH
Confidence 99987642 1110 1133556788888999998 788999999999998865555555443331 11111111000
Q ss_pred CccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChh
Q 017369 222 LAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPE 301 (372)
Q Consensus 222 ~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~ 301 (372)
..|. | +... ....+.+...+.+.++||+.+...+..++|. .+. ++
T Consensus 247 -~~g~----------------p------------l~sl----~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~~-~l~-~~ 291 (334)
T 3iei_A 247 -RRQC----------------D------------LAGV----ETCKSLESQKERLLSNGWETASAVDMMELYN-RLP-RA 291 (334)
T ss_dssp -TTTC----------------C------------CTTG----GGGGCHHHHHHHHHTTTCSEEEEEEHHHHHH-TSC-HH
T ss_pred -HhCC----------------C------------Cccc----ccCCCHHHHHHHHHHcCCCcceeecHHHHHH-hCC-HH
Confidence 0000 0 0000 0134667778889999999998888988884 342 22
Q ss_pred hHHHHHHhccCCCCCCCCCCCCHhHHHHHHh-hcEEE
Q 017369 302 YIELMRRLGALGDGNQDQSTLSADEWEVAYL-YLAFV 337 (372)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~~~ls~~e~e~~~l-y~~~v 337 (372)
-..-++++..++ --|||..+.- |++..
T Consensus 292 e~~ri~~lE~fD---------E~EE~~l~~~HY~i~~ 319 (334)
T 3iei_A 292 EVSRIESLEFLD---------EMELLEQLMRHYCLCW 319 (334)
T ss_dssp HHHHHHHHSCCC---------CHHHHHHHHTTEEEEE
T ss_pred HHHHHHhccccc---------cHHHHHHHhCceEEEE
Confidence 233344444432 1356664443 65554
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.015 Score=54.77 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=57.0
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc---cCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV---LAD 162 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~~~ 162 (372)
.+|||+.||.|+++.-+...+...+.++|+++.+++..+.++. ...++++|+.++..... ...
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~--------------~~~~~~~DI~~~~~~~~~~~~~~ 68 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP--------------RSLHVQEDVSLLNAEIIKGFFKN 68 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT--------------TSEEECCCGGGCCHHHHHHHHCS
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC--------------CCceEecChhhcCHHHHHhhccc
Confidence 5899999999999999988887668899999999988887764 35678899887643211 002
Q ss_pred CCCeeEEEecc
Q 017369 163 DAPFDICSCQF 173 (372)
Q Consensus 163 ~~~fD~V~~~~ 173 (372)
...+|+|+...
T Consensus 69 ~~~~D~i~ggp 79 (376)
T 3g7u_A 69 DMPIDGIIGGP 79 (376)
T ss_dssp CCCCCEEEECC
T ss_pred CCCeeEEEecC
Confidence 36799999765
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0035 Score=58.45 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=55.2
Q ss_pred CEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+|||+.||.|++...+...+ ...|+++|+++.+++..+.++.. ..++++|+.++.... + +.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~--------------~~~~~~Di~~~~~~~-~-~~ 66 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH--------------TQLLAKTIEGITLEE-F-DR 66 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT--------------SCEECSCGGGCCHHH-H-HH
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc--------------cccccCCHHHccHhH-c-Cc
Confidence 589999999999999988777 34699999999999999888752 346788887754211 1 11
Q ss_pred CCeeEEEeccc
Q 017369 164 APFDICSCQFA 174 (372)
Q Consensus 164 ~~fD~V~~~~~ 174 (372)
..+|+|+...-
T Consensus 67 ~~~D~l~~gpP 77 (343)
T 1g55_A 67 LSFDMILMSPP 77 (343)
T ss_dssp HCCSEEEECCC
T ss_pred CCcCEEEEcCC
Confidence 26899998753
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.011 Score=54.48 Aligned_cols=52 Identities=10% Similarity=0.279 Sum_probs=43.6
Q ss_pred HHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC
Q 017369 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 77 l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
++.....++..|||..||+|..+......+ .+.+|+|+++..++.|++|+..
T Consensus 245 ~i~~~~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 245 FIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp HHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence 345556889999999999998887776554 4899999999999999999864
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.31 Score=43.10 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=70.2
Q ss_pred CCCEEEEecCCccccHHHHHHc--------CCCEEEEEeCChHH---------------------------HHHHHHHhc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGS---------------------------IEDCRTRYN 128 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~---------------------------l~~a~~~~~ 128 (372)
-...|+|+||-.|+.+..++.. ...+++|+|.=+.+ ++...+...
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3468999999999977765431 23579999932211 111111110
Q ss_pred CCCcccccccC-CCcCeEEEECcCccccccccc--CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 129 GDADHHQRRKK-FSFPARLICGDCYEVHLDKVL--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 129 ~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. ++-+ ...++.++.+++.+.- +..+ .+..+||+|..-.-. | ......++.+...|+|||++++.
T Consensus 149 ~~-----~~~g~~~~~i~li~G~~~dTL-~~~l~~~~~~~~dlv~ID~D~-Y-----~~t~~~le~~~p~l~~GGvIv~D 216 (257)
T 3tos_A 149 CS-----DFFGHVTQRSVLVEGDVRETV-PRYLAENPQTVIALAYFDLDL-Y-----EPTKAVLEAIRPYLTKGSIVAFD 216 (257)
T ss_dssp TT-----STTTTSCCSEEEEESCHHHHH-HHHHHHCTTCCEEEEEECCCC-H-----HHHHHHHHHHGGGEEEEEEEEES
T ss_pred hh-----hhcCCCCCcEEEEEecHHHHH-HHHHHhCCCCceEEEEEcCcc-c-----chHHHHHHHHHHHhCCCcEEEEc
Confidence 00 0112 2368999999987532 1110 134579999987754 2 45667899999999999999986
Q ss_pred eC
Q 017369 206 MP 207 (372)
Q Consensus 206 ~~ 207 (372)
-.
T Consensus 217 D~ 218 (257)
T 3tos_A 217 EL 218 (257)
T ss_dssp ST
T ss_pred CC
Confidence 54
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=95.90 E-value=0.02 Score=52.85 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=53.7
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
+.+|||+.||.|++...+...+...+.++|+++.+++..+.++.. . .++|+.++... . -.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~--------------~--~~~Di~~~~~~-~---~~ 70 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------------K--PEGDITQVNEK-T---IP 70 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------------C--CBSCGGGSCGG-G---SC
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC--------------C--CcCCHHHcCHh-h---CC
Confidence 579999999999999999888876799999999999998888752 1 15787765432 1 13
Q ss_pred CeeEEEecc
Q 017369 165 PFDICSCQF 173 (372)
Q Consensus 165 ~fD~V~~~~ 173 (372)
.+|+|+...
T Consensus 71 ~~D~l~~gp 79 (327)
T 2c7p_A 71 DHDILCAGF 79 (327)
T ss_dssp CCSEEEEEC
T ss_pred CCCEEEECC
Confidence 589998864
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.018 Score=52.98 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=43.6
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCCh---HHHHHHHHHhcC
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE---GSIEDCRTRYNG 129 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~---~~l~~a~~~~~~ 129 (372)
..++.....++..|||.-||+|..+......+ .+.+|+|+++ ..++.|++|+..
T Consensus 233 ~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 233 ERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp HHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHH
Confidence 33455567899999999999998888776654 4899999999 999999999863
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.065 Score=48.68 Aligned_cols=106 Identities=12% Similarity=0.044 Sum_probs=58.5
Q ss_pred CCCCEEEEecCCccccHHHHH----H-cCCC--EEEEEeCCh--------H----HHHHHHHHhcCCCcccccccCCCcC
Q 017369 83 RRGDVVLDLACGKGGDLIKWD----K-AKIG--YYVGIDIAE--------G----SIEDCRTRYNGDADHHQRRKKFSFP 143 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~----~-~~~~--~v~gvD~s~--------~----~l~~a~~~~~~~~~~~~~~~~~~~~ 143 (372)
.+.-+|||+|-|+|....... + .... +++.+|..+ + ..+.....+... .+-...
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~-------~~~~v~ 167 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY-------EGERLS 167 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE-------ECSSEE
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc-------cCCcEE
Confidence 345689999999998543221 1 2222 467777522 1 111111121100 111224
Q ss_pred eEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHH----HHHHHHHHHhcCCCcEEE
Q 017369 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA----RRALANVSALLRPGGTFI 203 (372)
Q Consensus 144 ~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~----~~~l~~i~~~LkpgG~li 203 (372)
+.+..+|+.+.- .. + +...||+|+....- +..++ ..+++.++++++|||.|+
T Consensus 168 L~l~~GDa~~~l-~~-l-~~~~~Da~flDgFs-----P~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 168 LKVLLGDARKRI-KE-V-ENFKADAVFHDAFS-----PYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp EEEEESCHHHHG-GG-C-CSCCEEEEEECCSC-----TTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred EEEEechHHHHH-hh-h-cccceeEEEeCCCC-----cccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 567888886521 11 1 34579999875311 11111 479999999999999875
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.032 Score=51.36 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=54.0
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 165 (372)
.+|||+-||-|++..-+...+..-+.++|+++.+++.-+.+.. ..++.+|+.++...+ -..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~---------------~~~~~~DI~~i~~~~----~~~ 61 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS---------------AKLIKGDISKISSDE----FPK 61 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC---------------SEEEESCGGGCCGGG----SCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC---------------CCcccCChhhCCHhh----CCc
Confidence 4799999999999988887787668899999998888777654 356789998775431 246
Q ss_pred eeEEEecc
Q 017369 166 FDICSCQF 173 (372)
Q Consensus 166 fD~V~~~~ 173 (372)
+|+++...
T Consensus 62 ~D~l~ggp 69 (331)
T 3ubt_Y 62 CDGIIGGP 69 (331)
T ss_dssp CSEEECCC
T ss_pred ccEEEecC
Confidence 89988754
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.042 Score=51.48 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=63.6
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--c
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--H 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~ 155 (372)
..+.++.+||-+|||. |..+..+++. +...|+++|.+++.++.+++... ..++..+-.+. .
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~ 250 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA---------------THVINSKTQDPVAA 250 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC---------------SEEEETTTSCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC---------------CEEecCCccCHHHH
Confidence 4567899999999986 6667777664 44479999999999988876432 11122111110 0
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+ . ..+.+|+|+-.... ...+..+.+.|++||.++..
T Consensus 251 ~~~-~-~~gg~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 251 IKE-I-TDGGVNFALESTGS----------PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp HHH-H-TTSCEEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred HHH-h-cCCCCcEEEECCCC----------HHHHHHHHHHHhcCCEEEEe
Confidence 001 1 12379999854332 14577888999999998753
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.034 Score=50.46 Aligned_cols=76 Identities=24% Similarity=0.272 Sum_probs=56.2
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCE--EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGY--YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
....+|+|+.||.|+...-+...+... |.++|+++.+++..+.+.. ...++.+|+.++...+..
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~--------------~~~~~~~DI~~i~~~~i~ 79 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ--------------GKIMYVGDVRSVTQKHIQ 79 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT--------------TCEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC--------------CCceeCCChHHccHHHhc
Confidence 346799999999999998888777655 6899999998887776654 245678898876532111
Q ss_pred CCCCCeeEEEecc
Q 017369 161 ADDAPFDICSCQF 173 (372)
Q Consensus 161 ~~~~~fD~V~~~~ 173 (372)
..+.+|+++...
T Consensus 80 -~~~~~Dll~ggp 91 (295)
T 2qrv_A 80 -EWGPFDLVIGGS 91 (295)
T ss_dssp -HTCCCSEEEECC
T ss_pred -ccCCcCEEEecC
Confidence 124699998864
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.084 Score=49.43 Aligned_cols=101 Identities=11% Similarity=-0.017 Sum_probs=64.9
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
....+.++.+||-+|+|. |..+..+++... ..|+++|.+++.++.+++.... ..+ |..+..
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---------------~vi--~~~~~~ 238 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT---------------ATV--DPSAGD 238 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS---------------EEE--CTTSSC
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC---------------EEE--CCCCcC
Confidence 445678999999999875 666667766544 4899999999998888765321 111 211111
Q ss_pred ccccc-----CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKVL-----ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~~-----~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+.+ ...+.+|+|+-.... ...+..+.+.|++||.++..
T Consensus 239 ~~~~i~~~~~~~~gg~Dvvid~~G~----------~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 239 VVEAIAGPVGLVPGGVDVVIECAGV----------AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp HHHHHHSTTSSSTTCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHhhhhccCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence 10000 023489999864331 14577888999999998754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.054 Score=50.00 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=64.5
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
....+.++.+||-.|+|. |..+..+++....+|+++|.+++.++.+++... ...+ |..+..+
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~~i--~~~~~~~ 222 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA---------------EVAV--NARDTDP 222 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---------------SEEE--ETTTSCH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC---------------CEEE--eCCCcCH
Confidence 334567899999999975 777777777655599999999999988866332 1112 2111111
Q ss_pred cccc-CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVL-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.+ ...+.+|+|+..... ...+..+.+.|++||.++..
T Consensus 223 ~~~~~~~~g~~d~vid~~g~----------~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 223 AAWLQKEIGGAHGVLVTAVS----------PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp HHHHHHHHSSEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHhCCCCCEEEEeCCC----------HHHHHHHHHHhccCCEEEEe
Confidence 0000 011378988754321 14677888999999998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.12 Score=47.99 Aligned_cols=102 Identities=15% Similarity=0.052 Sum_probs=63.2
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC-ccc-
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEV- 154 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~- 154 (372)
....+.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++... . ..+..+- .+.
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa--------------~-~~~~~~~~~~~~ 226 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA--------------D-VTLVVDPAKEEE 226 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC--------------S-EEEECCTTTSCH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC--------------C-EEEcCcccccHH
Confidence 344577899999999875 666677776555579999999998888865321 1 1121110 110
Q ss_pred -ccccccCC---CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 155 -HLDKVLAD---DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 155 -~~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.... . ...+|+|+..... ...+....+.|++||.++..
T Consensus 227 ~~i~~~~-~~~~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 227 SSIIERI-RSAIGDLPNVTIDCSGN----------EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHHHHH-HHHSSSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHh-ccccCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 000000 1 2469999864432 13567788899999998754
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.15 Score=47.32 Aligned_cols=100 Identities=15% Similarity=0.060 Sum_probs=63.1
Q ss_pred HHhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc---Ccc
Q 017369 79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYE 153 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D---~~~ 153 (372)
...+.++.+||-+|+|. |..+..+++.... .|+++|.+++-++.+++... . .++..+ ..+
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--------------~-~vi~~~~~~~~~ 230 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA--------------D-LVLQISKESPQE 230 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC--------------S-EEEECSSCCHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC--------------C-EEEcCcccccch
Confidence 34577899999999875 6667777765444 89999999998888865321 1 122211 000
Q ss_pred c--ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 154 V--HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 154 ~--~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. .+.... . ..+|+|+-.-.. ...+....++|+|||.++..
T Consensus 231 ~~~~i~~~~-~-~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 231 IARKVEGQL-G-CKPEVTIECTGA----------EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHHHHHHH-T-SCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHHh-C-CCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence 0 000001 2 569999864332 13567778899999998753
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.057 Score=50.58 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=62.8
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
..+.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++... ..++ |..+.....
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa---------------~~vi--~~~~~~~~~ 252 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA---------------DEVV--NSRNADEMA 252 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC---------------SEEE--ETTCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------cEEe--ccccHHHHH
Confidence 4567899999999975 666777776555579999999998888876322 1112 111111111
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. ...+|+|+....-. ..+....+.|+++|.++..
T Consensus 253 ~~--~~g~Dvvid~~g~~----------~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 253 AH--LKSFDFILNTVAAP----------HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp TT--TTCEEEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred Hh--hcCCCEEEECCCCH----------HHHHHHHHHhccCCEEEEe
Confidence 11 15799998654432 1346677899999998753
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.031 Score=51.67 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=53.2
Q ss_pred CEEEEecCCccccHHHHHHcCC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+|+|+.||.|++..-+...+. ..+.++|+++.+++.-+.++.. ..++++|+.++...+. +.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~--------------~~~~~~DI~~~~~~~~--~~ 67 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE--------------TNLLNRNIQQLTPQVI--KK 67 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT--------------SCEECCCGGGCCHHHH--HH
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC--------------CceeccccccCCHHHh--cc
Confidence 4799999999999988877665 3488999999999888877652 3456788877653211 12
Q ss_pred CCeeEEEecc
Q 017369 164 APFDICSCQF 173 (372)
Q Consensus 164 ~~fD~V~~~~ 173 (372)
..+|+++...
T Consensus 68 ~~~D~l~ggp 77 (333)
T 4h0n_A 68 WNVDTILMSP 77 (333)
T ss_dssp TTCCEEEECC
T ss_pred CCCCEEEecC
Confidence 3689998654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.068 Score=49.51 Aligned_cols=94 Identities=16% Similarity=0.052 Sum_probs=64.0
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
....+.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++... .. ++ .+.. .+
T Consensus 170 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa--------------~~-v~-~~~~--~~ 231 (348)
T 3two_A 170 KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGV--------------KH-FY-TDPK--QC 231 (348)
T ss_dssp HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTC--------------SE-EE-SSGG--GC
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCC--------------Ce-ec-CCHH--HH
Confidence 344678899999999875 667777776555589999999998888876322 11 22 2321 11
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
...+|+|+-...-. ..+....+.|+|||.++..
T Consensus 232 ------~~~~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 232 ------KEELDFIISTIPTH----------YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp ------CSCEEEEEECCCSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred ------hcCCCEEEECCCcH----------HHHHHHHHHHhcCCEEEEE
Confidence 12799998654432 2456778899999998754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.1 Score=48.38 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=65.1
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
....+.++.+||-+|+|. |..+..+++.... .|+++|.+++.++.+++.... .++ |..+..
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~---------------~vi--~~~~~~ 222 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT---------------DII--NYKNGD 222 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC---------------EEE--CGGGSC
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc---------------eEE--cCCCcC
Confidence 445678899999999875 6667777765444 799999999988888775321 112 211111
Q ss_pred ccc---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDK---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+ .......+|+|+-...-. ..+..+.+.|+|||.++..
T Consensus 223 ~~~~v~~~t~g~g~D~v~d~~g~~----------~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 223 IVEQILKATDGKGVDKVVIAGGDV----------HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp HHHHHHHHTTTCCEEEEEECSSCT----------THHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEECCCCh----------HHHHHHHHHHhcCCEEEEe
Confidence 110 011234799998643321 3567788899999998754
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.11 Score=49.17 Aligned_cols=110 Identities=14% Similarity=0.041 Sum_probs=65.0
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV- 154 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~- 154 (372)
....+.++.+||-+|||. |..+..+++. +..+|+++|.+++.++.+++.. +..+..+-.+.
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG----------------a~~i~~~~~~~~ 242 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG----------------FETIDLRNSAPL 242 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT----------------CEEEETTSSSCH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC----------------CcEEcCCCcchH
Confidence 344677899999999976 7777777764 4448999999999888875321 22232211111
Q ss_pred --ccccccCCCCCeeEEEecccccccCCCH----HHHHHHHHHHHHhcCCCcEEEE
Q 017369 155 --HLDKVLADDAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 155 --~~~~~~~~~~~fD~V~~~~~l~~~~~~~----~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.+.... ....+|+|+-.-.-....... ......+..+.+.|++||++++
T Consensus 243 ~~~~~~~~-~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 243 RDQIDQIL-GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp HHHHHHHH-SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred HHHHHHHh-CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 000000 223699998654432100000 0012357888899999999864
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.23 Score=46.14 Aligned_cols=105 Identities=17% Similarity=0.025 Sum_probs=65.6
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
....+.++.+||=+|+|. |..+..+++..... |+++|.+++-++.+++. .. .-+.+...+.....
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~------------~~~~~~~~~~~~~~ 239 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP------------EVVTHKVERLSAEE 239 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT------------TCEEEECCSCCHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch------------hcccccccccchHH
Confidence 445678899999999875 66677777654444 99999999999999876 31 11222111111011
Q ss_pred cccc---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+. ......+|+|+-...- ...+..+.+.|++||.++..
T Consensus 240 ~~~~v~~~t~g~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 240 SAKKIVESFGGIEPAVALECTGV----------ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HHHHHHHHTSSCCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHHhCCCCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence 1000 0123579999864432 13567788899999998754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.073 Score=49.23 Aligned_cols=97 Identities=19% Similarity=0.028 Sum_probs=61.4
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-ccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHL 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~ 156 (372)
.+ ++.+||-+|+|. |..+..+++.. ..+|+++|.+++.++.+++.... .++ |..+ ...
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------------~vi--~~~~~~~~ 229 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD---------------YVS--EMKDAESL 229 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS---------------EEE--CHHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC---------------EEe--ccccchHH
Confidence 56 899999999974 55666666654 45899999999988888764321 111 1111 000
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
...+.....+|+|+..-.. ...+..+.+.|++||.++..
T Consensus 230 ~~~~~~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 230 INKLTDGLGASIAIDLVGT----------EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp HHHHHTTCCEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHhhcCCCccEEEECCCC----------hHHHHHHHHHhhcCCEEEEe
Confidence 0001023379999865432 13567788999999998753
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.045 Score=50.43 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=54.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCC--CEE-EEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKI--GYY-VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~--~~v-~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...+|+|+.||.|++..-+...+. ..+ .++|+++.+++..+.++.. . ++++|+.++...+.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------------~-~~~~DI~~~~~~~i- 72 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------------E-VQVKNLDSISIKQI- 72 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------------C-CBCCCTTTCCHHHH-
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------------C-cccCChhhcCHHHh-
Confidence 356899999999999998887764 457 7999999999988888752 1 46788877653211
Q ss_pred CCCCCeeEEEecc
Q 017369 161 ADDAPFDICSCQF 173 (372)
Q Consensus 161 ~~~~~fD~V~~~~ 173 (372)
+...+|+++...
T Consensus 73 -~~~~~Dil~ggp 84 (327)
T 3qv2_A 73 -ESLNCNTWFMSP 84 (327)
T ss_dssp -HHTCCCEEEECC
T ss_pred -ccCCCCEEEecC
Confidence 123689998764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.066 Score=45.10 Aligned_cols=97 Identities=21% Similarity=0.170 Sum_probs=58.5
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+||..|+ |.|..+..++.....+|+++|.+++.++.+++. . ... .+ |..+....+
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~-g-------------~~~-~~--d~~~~~~~~ 97 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL-G-------------VEY-VG--DSRSVDFAD 97 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT-C-------------CSE-EE--ETTCSTHHH
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-C-------------CCE-Ee--eCCcHHHHH
Confidence 4568899999995 445556665554345899999999877766431 1 111 11 222211100
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+....- ..+..+.+.|+|||+++..
T Consensus 98 ~~~~~~~~~~~D~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 98 EILELTDGYGVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp HHHHHTTTCCEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHhCCCCCeEEEECCch-----------HHHHHHHHHhccCCEEEEE
Confidence 0 0022469999865321 3567888999999988754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.37 Score=38.01 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=63.9
Q ss_pred CCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
..+|+=+|||. |..+...+......|+++|.+++.++.+++. .+.++.+|..+....... .-
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~----------------g~~~i~gd~~~~~~l~~a-~i 69 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER----------------GVRAVLGNAANEEIMQLA-HL 69 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT----------------TCEEEESCTTSHHHHHHT-TG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc----------------CCCEEECCCCCHHHHHhc-Cc
Confidence 35789999986 4444444444444799999999988877642 256788998764321111 12
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
..+|+|++...- ......+-...+.+.|+..++....+...
T Consensus 70 ~~ad~vi~~~~~-------~~~n~~~~~~a~~~~~~~~iiar~~~~~~ 110 (140)
T 3fwz_A 70 ECAKWLILTIPN-------GYEAGEIVASARAKNPDIEIIARAHYDDE 110 (140)
T ss_dssp GGCSEEEECCSC-------HHHHHHHHHHHHHHCSSSEEEEEESSHHH
T ss_pred ccCCEEEEECCC-------hHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 468888764321 12223334456677888888877766643
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.26 Score=45.31 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=62.0
Q ss_pred HHhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
...+.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++... . .. .|..+..+.
T Consensus 159 ~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa--------------~-~~--~d~~~~~~~ 221 (339)
T 1rjw_A 159 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA--------------D-LV--VNPLKEDAA 221 (339)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC--------------S-EE--ECTTTSCHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC--------------C-EE--ecCCCccHH
Confidence 34577899999999863 556666666555589999999998888864211 1 11 132221111
Q ss_pred cccC-CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KVLA-DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+. ..+.+|+|+..... ...+..+.+.|++||.++..
T Consensus 222 ~~~~~~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 222 KFMKEKVGGVHAAVVTAVS----------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HHHHHHHSSEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHhCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEe
Confidence 0000 00469999864432 13567788899999998753
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.11 Score=48.35 Aligned_cols=99 Identities=15% Similarity=0.026 Sum_probs=61.3
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-ccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~ 157 (372)
..+.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++... ..++ |..+. .+.
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~v~--~~~~~~~~~ 237 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA---------------DHYI--ATLEEGDWG 237 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC---------------SEEE--EGGGTSCHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC---------------CEEE--cCcCchHHH
Confidence 4567899999999864 556666666444479999999988888876322 1112 22111 111
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+ . +.+|+|+....... ...+..+.+.|++||.++..
T Consensus 238 ~~~-~-~~~D~vid~~g~~~--------~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 238 EKY-F-DTFDLIVVCASSLT--------DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp HHS-C-SCEEEEEECCSCST--------TCCTTTGGGGEEEEEEEEEC
T ss_pred HHh-h-cCCCEEEECCCCCc--------HHHHHHHHHHhcCCCEEEEe
Confidence 111 1 47999987544300 01245567899999998753
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.22 Score=46.96 Aligned_cols=110 Identities=9% Similarity=0.024 Sum_probs=65.3
Q ss_pred HHhCCCCCEEEEecCCc-cccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-c-
Q 017369 79 QLYARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-V- 154 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~- 154 (372)
...+.++.+||-+|||. |..+..+++... ..|+++|.+++.++.|++.. +..+...-.+ +
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG----------------a~~i~~~~~~~~~ 243 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG----------------FEIADLSLDTPLH 243 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT----------------CEEEETTSSSCHH
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC----------------CcEEccCCcchHH
Confidence 34567899999999876 667777776544 47999999999988886532 1222211111 0
Q ss_pred -ccccccCCCCCeeEEEecccccccCC-----CHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 155 -HLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 155 -~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.+.. ....+|+|+-.-....... ...+....+....+.|++||.+++.
T Consensus 244 ~~v~~~t-~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 244 EQIAALL-GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp HHHHHHH-SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHh-CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 000000 2247999987544210000 0011224678888999999998753
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.16 Score=46.93 Aligned_cols=98 Identities=8% Similarity=0.079 Sum_probs=63.3
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--c
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~ 156 (372)
.+.++.+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++... ..++..+- +.. .
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa---------------~~~i~~~~-~~~~~v 231 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA---------------DAAVKSGA-GAADAI 231 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC---------------SEEEECST-THHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------CEEEcCCC-cHHHHH
Confidence 567899999999975 6666677664 36689999999999988876432 11222111 100 0
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.. ....+|+|+-.-.- ...+..+.+.|++||.++..
T Consensus 232 ~~~t-~g~g~d~v~d~~G~----------~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 232 RELT-GGQGATAVFDFVGA----------QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp HHHH-GGGCEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHh-CCCCCeEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 0000 12479999864332 13678888999999998754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.22 Score=45.95 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=61.6
Q ss_pred HHhCCCCCEEEEecCC--ccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 79 QLYARRGDVVLDLACG--KGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG--~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
...+.++.+||-.|+| .|..+..++... ..+|+++|.+++.++.+++... .. ++ |..+..
T Consensus 165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~--------------~~-~~--~~~~~~ 227 (347)
T 1jvb_A 165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA--------------DY-VI--NASMQD 227 (347)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC--------------SE-EE--ETTTSC
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC--------------CE-Ee--cCCCcc
Confidence 3456789999999998 455555665543 4589999999998888865321 11 11 221111
Q ss_pred cc---cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 156 LD---KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 156 ~~---~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.. ......+.+|+|+....- ...+..+.+.|+++|.++.
T Consensus 228 ~~~~~~~~~~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 228 PLAEIRRITESKGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp HHHHHHHHTTTSCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEE
T ss_pred HHHHHHHHhcCCCceEEEECCCC----------HHHHHHHHHHHhcCCEEEE
Confidence 10 001011479999865432 1356778899999999875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.16 Score=46.74 Aligned_cols=98 Identities=20% Similarity=0.199 Sum_probs=60.7
Q ss_pred HhCCCCCEEEEecCC--ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..+.++.+||-+||| .|..+..+++....+|+++|.+++.++.+++... . ..+ |..+..+.
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga--------------~-~~~--~~~~~~~~ 202 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA--------------A-YVI--DTSTAPLY 202 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC--------------S-EEE--ETTTSCHH
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC--------------c-EEE--eCCcccHH
Confidence 356789999999997 4666666666544589999999998888876432 1 112 22111111
Q ss_pred cc---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+. ......+|+|+....-. . +....+.|++||.++..
T Consensus 203 ~~~~~~~~~~g~Dvvid~~g~~-------~----~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 203 ETVMELTNGIGADAAIDSIGGP-------D----GNELAFSLRPNGHFLTI 242 (340)
T ss_dssp HHHHHHTTTSCEEEEEESSCHH-------H----HHHHHHTEEEEEEEEEC
T ss_pred HHHHHHhCCCCCcEEEECCCCh-------h----HHHHHHHhcCCCEEEEE
Confidence 00 11234799998654321 1 22344799999998754
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.7 Score=43.58 Aligned_cols=103 Identities=12% Similarity=-0.080 Sum_probs=60.5
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+||=+|+|. |..+..+++.... .|+++|.+++-++.+++.... .++ |..+..+.+
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~---------------~vi--~~~~~~~~~ 272 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD---------------HVI--DPTKENFVE 272 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS---------------EEE--CTTTSCHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC---------------EEE--cCCCCCHHH
Confidence 357899999999865 5566666665444 899999999999988765321 112 221111100
Q ss_pred ---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 ---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.......+|+|+-.-.-.. .....+++.+.+.+++||.++..
T Consensus 273 ~i~~~t~g~g~D~vid~~g~~~-----~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 273 AVLDYTNGLGAKLFLEATGVPQ-----LVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp HHHHHTTTCCCSEEEECSSCHH-----HHHHHHHHHHHHCSCCCCEEEEC
T ss_pred HHHHHhCCCCCCEEEECCCCcH-----HHHHHHHHHHHhccCCCcEEEEe
Confidence 0112347999986433210 12233334444555999998754
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.70 E-value=0.16 Score=49.23 Aligned_cols=60 Identities=10% Similarity=0.064 Sum_probs=46.0
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
..+|+|+.||.|++..-+...+...|.++|+++.+++.-+.++.. .....++++|+.++.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~-----------~p~~~~~~~DI~~i~ 147 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC-----------DPATHHFNEDIRDIT 147 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC-----------CTTTCEEESCTHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc-----------CCCcceeccchhhhh
Confidence 468999999999999988777665589999999988887776631 123456778887654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.69 E-value=0.11 Score=47.09 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=41.9
Q ss_pred CeEEEECcCcccccccccCCCCCeeEEEecccccccC--CC--------------HHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW--ST--------------EARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 143 ~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~~--------------~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.++++|+.+.. ..+ ++++||+|+++--....- .. ......+++++.++|||||.+++.+
T Consensus 21 ~~~i~~gD~~~~l--~~l-~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 21 VHRLHVGDAREVL--ASF-PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp CEEEEESCHHHHH--TTS-CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECcHHHHH--hhC-CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5789999997621 011 568999999974322100 00 0123567889999999999998887
Q ss_pred CC
Q 017369 207 PD 208 (372)
Q Consensus 207 ~~ 208 (372)
.+
T Consensus 98 ~d 99 (297)
T 2zig_A 98 GD 99 (297)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=9.6 Score=38.52 Aligned_cols=151 Identities=9% Similarity=0.051 Sum_probs=84.5
Q ss_pred CeEEEECcCcccc-ccccc----C-CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE-EeCCh----HH
Q 017369 143 PARLICGDCYEVH-LDKVL----A-DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG-TMPDA----NV 211 (372)
Q Consensus 143 ~~~~~~~D~~~~~-~~~~~----~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~-~~~~~----~~ 211 (372)
+..++..|+.+.. +...+ . .....-++++-.++.|+ +++...++|+.+.+ + |+|.+++ ...++ +.
T Consensus 189 ~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl--~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 189 KYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYM--KPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp SEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGS--CHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEc--CHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 6788999998752 11111 1 22445678888899998 78899999999985 4 5666554 33222 11
Q ss_pred HHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhH
Q 017369 212 IIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHE 291 (372)
Q Consensus 212 ~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~ 291 (372)
.-..+.+... ..|. + + .... ...+.+...+.+.++||+.+...++.+
T Consensus 265 f~~~m~~~~~-~~g~----------------~----l--------~~~~----~~~~~~~~~~~~~~~Gw~~v~~~~~~~ 311 (695)
T 2zwa_A 265 FSKQMLAHFK-RNDS----------------P----L--------QSVL----KYNTIESQVQRFNKLGFAYVNVGDMFQ 311 (695)
T ss_dssp HHHHHHHHHH-HTTC----------------C----C--------CGGG----TCCSHHHHHHHHHHTTCCEEEEEEHHH
T ss_pred HHHHHHHHHH-HcCC----------------C----C--------Cccc----cCCCHHHHHHHHHHCCCCCcceeeHHH
Confidence 1111111000 0000 0 0 0000 244677888999999999998888888
Q ss_pred HHHHHhCChhhHHHHHHhccCCCCCCCCCCCCHhHHH-HHHhhcEEEEEec
Q 017369 292 FVHEYLKKPEYIELMRRLGALGDGNQDQSTLSADEWE-VAYLYLAFVLRKR 341 (372)
Q Consensus 292 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ls~~e~e-~~~ly~~~vf~K~ 341 (372)
.|. +... .-......+..+ +..+||. ....|++.+-.+.
T Consensus 312 ~y~-~~~~-~e~~R~~~lE~l---------dE~e~~~l~~~hY~~~~a~~~ 351 (695)
T 2zwa_A 312 LWE-SADE-ATKKELLKVEPF---------DELEEFHLFCHHYVLCHATNY 351 (695)
T ss_dssp HHH-HSCH-HHHHHHHHHSCC---------CCHHHHHHHHHTEEEEEEESC
T ss_pred HHh-hCCH-HHHHHHHhcccc---------chHHHHHHhhccEEEEEEecC
Confidence 875 5432 222223343332 3445555 3344766665543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.22 Score=45.64 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=60.3
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-cccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLD 157 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~ 157 (372)
.+.++.+||-.|| |.|..+..++.....+|+++|.+++.++.+++ +.. .. ..|..+ ..+.
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~-------------~~---~~d~~~~~~~~ 204 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGF-------------DA---AFNYKTVNSLE 204 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTC-------------SE---EEETTSCSCHH
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCC-------------cE---EEecCCHHHHH
Confidence 4678899999998 45656666666555589999999988887733 220 11 113322 1110
Q ss_pred cc---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. . ..+.+|+++.+... ..+....+.|++||.++..
T Consensus 205 ~~~~~~-~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 205 EALKKA-SPDGYDCYFDNVGG-----------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHHHH-CTTCEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHH-hCCCCeEEEECCCh-----------HHHHHHHHHHhcCCEEEEE
Confidence 00 1 12579999865442 2467788999999998753
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.34 Score=45.07 Aligned_cols=99 Identities=13% Similarity=-0.067 Sum_probs=63.3
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--c
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~ 156 (372)
..++++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++... ...+..+..+.. +
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~v 249 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA---------------DHGINRLEEDWVERV 249 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC---------------SEEEETTTSCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC---------------CEEEcCCcccHHHHH
Confidence 4567899999999875 666667766555589999999998888876432 112221111110 0
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.... ....+|+|+-...- ..+..+.+.|+|||.++..
T Consensus 250 ~~~~-~g~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 250 YALT-GDRGADHILEIAGG-----------AGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp HHHH-TTCCEEEEEEETTS-----------SCHHHHHHHEEEEEEEEEE
T ss_pred HHHh-CCCCceEEEECCCh-----------HHHHHHHHHhhcCCEEEEE
Confidence 0001 23479999865441 2356777899999998754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.30 E-value=0.41 Score=44.62 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=61.8
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--cc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--VH 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~ 155 (372)
..+.++.+||-+|+|. |..+..+++.... .|+++|.+++.++.+++... ..++ |..+ ..
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi--~~~~~~~~ 250 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA---------------TDFV--NPNDHSEP 250 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------CEEE--CGGGCSSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC---------------ceEE--eccccchh
Confidence 3567899999999875 6566667665444 79999999998888864321 1111 2211 01
Q ss_pred cccccC--CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC-cEEEEE
Q 017369 156 LDKVLA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT 205 (372)
Q Consensus 156 ~~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~li~~ 205 (372)
+.+.+. ..+.+|+|+-.-.. ...+..+.+.|++| |.++..
T Consensus 251 ~~~~~~~~~~~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 251 ISQVLSKMTNGGVDFSLECVGN----------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHHHHHHHTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHHhCCCCCEEEECCCC----------HHHHHHHHHHhhcCCcEEEEE
Confidence 100000 12479999864332 13567888999999 998753
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.2 Score=47.68 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=39.7
Q ss_pred CCCCEEEEecCCccccHHHHH-Hc-C-CCEEEEEeCChHHHHHHHHHhc
Q 017369 83 RRGDVVLDLACGKGGDLIKWD-KA-K-IGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~-~~-~-~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
.++..|+|+||+.|..+..++ .. + .++|+++|+++...+..+++..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~ 273 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 273 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 688999999999999998877 33 2 3689999999999999998876
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.25 E-value=0.53 Score=43.85 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=61.6
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--cc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--VH 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~ 155 (372)
..+.++.+||-+|+|. |..+..+++.... .|+++|.+++.++.+++... ..++ |..+ ..
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi--~~~~~~~~ 249 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA---------------TECV--NPQDYKKP 249 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------SEEE--CGGGCSSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC---------------ceEe--cccccchh
Confidence 3567899999999875 6666666665444 79999999998888864321 1111 2211 01
Q ss_pred ccc---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC-cEEEEE
Q 017369 156 LDK---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT 205 (372)
Q Consensus 156 ~~~---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~li~~ 205 (372)
+.+ .. ..+.+|+|+-.-.. ...+....+.|++| |.++..
T Consensus 250 ~~~~~~~~-~~~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 250 IQEVLTEM-SNGGVDFSFEVIGR----------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHHHHHHH-TTSCBSEEEECSCC----------HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHHHHHHH-hCCCCcEEEECCCC----------HHHHHHHHHHhhcCCcEEEEe
Confidence 100 01 12479999854332 13567788899999 998753
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.3 Score=44.76 Aligned_cols=99 Identities=14% Similarity=-0.000 Sum_probs=62.7
Q ss_pred HHhCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 79 QLYARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 79 ~~~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
...+.++.+||-.|| |.|..+..+++....+|+++|.+++-++.+.+.+. .. ..+ |..+..+
T Consensus 144 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g-------------~~-~~~--~~~~~~~ 207 (336)
T 4b7c_A 144 VGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELG-------------FD-GAI--DYKNEDL 207 (336)
T ss_dssp TTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-------------CS-EEE--ETTTSCH
T ss_pred hcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-------------CC-EEE--ECCCHHH
Confidence 345778999999998 34666777766555599999999988887743332 01 112 2221111
Q ss_pred ccc---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+. . ..+.+|+|+....- ..+..+.+.|++||.++..
T Consensus 208 ~~~~~~~-~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 208 AAGLKRE-CPKGIDVFFDNVGG-----------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHHHHHH-CTTCEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHh-cCCCceEEEECCCc-----------chHHHHHHHHhhCCEEEEE
Confidence 100 1 13579999864331 3577888999999998753
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.53 Score=43.82 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=61.9
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--cc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--VH 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~ 155 (372)
..+.++.+||-+|+|. |..+..+++. +...|+++|.+++.++.+++.... .++ |..+ ..
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~---------------~vi--~~~~~~~~ 248 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT---------------ECI--NPQDFSKP 248 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS---------------EEE--CGGGCSSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------------eEe--cccccccc
Confidence 3567899999999875 5566666664 444799999999998888754321 111 2211 01
Q ss_pred ccc---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC-cEEEEE
Q 017369 156 LDK---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT 205 (372)
Q Consensus 156 ~~~---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~li~~ 205 (372)
+.+ .. ..+.+|+|+-.... ...+..+.+.|+++ |.++..
T Consensus 249 ~~~~v~~~-~~~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 249 IQEVLIEM-TDGGVDYSFECIGN----------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HHHHHHHH-TTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHH-hCCCCCEEEECCCc----------HHHHHHHHHhhccCCcEEEEE
Confidence 100 01 12479999864332 13567888999999 998753
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.47 Score=44.19 Aligned_cols=98 Identities=11% Similarity=0.015 Sum_probs=61.6
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--cc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--VH 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~ 155 (372)
..+.++.+||-+|+|. |..+..+++. +...|+++|.+++-++.+++... ..++ |..+ ..
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi--~~~~~~~~ 249 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA---------------TECL--NPKDYDKP 249 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC---------------SEEE--CGGGCSSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC---------------cEEE--ecccccch
Confidence 3567899999999875 5566666664 44489999999998888865321 1112 2111 01
Q ss_pred ccc---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC-cEEEEE
Q 017369 156 LDK---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT 205 (372)
Q Consensus 156 ~~~---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~li~~ 205 (372)
+.+ .. ..+.+|+|+-.-.. ...+....+.|+++ |.++..
T Consensus 250 ~~~~i~~~-t~gg~Dvvid~~g~----------~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 250 IYEVICEK-TNGGVDYAVECAGR----------IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HHHHHHHH-TTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHH-hCCCCCEEEECCCC----------HHHHHHHHHHHhcCCCEEEEE
Confidence 100 01 12479999864332 14567888999999 998754
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.37 Score=44.35 Aligned_cols=97 Identities=16% Similarity=0.070 Sum_probs=62.1
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+||-.|+ |.|..+..++.....+|+++|.+++.++.+++... . ..+ |..+..+.+
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga--------------~-~~~--d~~~~~~~~ 225 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGA--------------D-ETV--NYTHPDWPK 225 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC--------------S-EEE--ETTSTTHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC--------------C-EEE--cCCcccHHH
Confidence 4568899999998 56667777766555589999999998888865321 1 112 222211110
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+.... . ..+..+.+.|+++|.++..
T Consensus 226 ~~~~~~~~~~~d~vi~~~g-~----------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 226 EVRRLTGGKGADKVVDHTG-A----------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp HHHHHTTTTCEEEEEESSC-S----------SSHHHHHHHEEEEEEEEES
T ss_pred HHHHHhCCCCceEEEECCC-H----------HHHHHHHHhhccCCEEEEE
Confidence 0 002347999987654 2 2356778899999988753
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.79 E-value=0.43 Score=44.63 Aligned_cols=99 Identities=16% Similarity=0.016 Sum_probs=61.1
Q ss_pred CCCCCEEEEecCCc-cccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc-cccccc
Q 017369 82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~ 158 (372)
+.++.+||-+|+|. |..+..+++... .+|+++|.+++.++.+++... -.++..+.. +..+.+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~~~ 257 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA---------------DLTLNRRETSVEERRK 257 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC---------------cEEEeccccCcchHHH
Confidence 67899999999764 556666666555 589999999998888874321 112221100 111100
Q ss_pred ---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 ---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.......+|+|+-..... ..+....+.|++||.++..
T Consensus 258 ~v~~~~~g~g~Dvvid~~g~~----------~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 258 AIMDITHGRGADFILEATGDS----------RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHHHHTTTSCEEEEEECSSCT----------THHHHHHHHEEEEEEEEEC
T ss_pred HHHHHhCCCCCcEEEECCCCH----------HHHHHHHHHHhcCCEEEEE
Confidence 010223699998654321 3467778899999998753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.21 Score=46.15 Aligned_cols=99 Identities=20% Similarity=0.114 Sum_probs=61.6
Q ss_pred HhCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-ccc
Q 017369 80 LYARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHL 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~ 156 (372)
..+.++.+||-+|+ |.|..+..++.....+|+++|.+++.++.+++... . ..+ |..+ ..+
T Consensus 165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~--------------~-~~~--d~~~~~~~ 227 (347)
T 2hcy_A 165 ANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGG--------------E-VFI--DFTKEKDI 227 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTC--------------C-EEE--ETTTCSCH
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCC--------------c-eEE--ecCccHhH
Confidence 35678999999998 45666666666545589999999888877754211 1 111 3221 111
Q ss_pred ccccC--CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
...+. ..+.+|+|+..... ...++.+.+.|++||.++..
T Consensus 228 ~~~~~~~~~~~~D~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 228 VGAVLKATDGGAHGVINVSVS----------EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHHHHHHHTSCEEEEEECSSC----------HHHHHHHTTSEEEEEEEEEC
T ss_pred HHHHHHHhCCCCCEEEECCCc----------HHHHHHHHHHHhcCCEEEEE
Confidence 00000 01279999865442 14678888999999998753
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.34 Score=44.72 Aligned_cols=97 Identities=19% Similarity=0.063 Sum_probs=60.8
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+ ++.+||-+|+|. |..+..+++.... +|+++|.+++.++.+++... ...+ |..+..+.+
T Consensus 165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga---------------~~~~--~~~~~~~~~ 226 (348)
T 2d8a_A 165 PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA---------------DYVI--NPFEEDVVK 226 (348)
T ss_dssp CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC---------------SEEE--CTTTSCHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---------------CEEE--CCCCcCHHH
Confidence 45 889999999964 5566666665444 79999999988888875322 1111 221111110
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+..... ...+..+.+.|+++|.++..
T Consensus 227 ~v~~~~~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 227 EVMDITDGNGVDVFLEFSGA----------PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp HHHHHTTTSCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHcCCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 0 0022469999865432 13567788899999998753
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.3 Score=45.70 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=61.9
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc--ccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY--EVH 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~ 155 (372)
..+.++.+||-+|+|. |..+..+++. +..+|+++|.+++-++.|++.-. ..++ |.. +..
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi--~~~~~~~~ 251 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV---------------NEFV--NPKDHDKP 251 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC---------------CEEE--CGGGCSSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---------------cEEE--ccccCchh
Confidence 4567899999999974 6666666664 44479999999998888764321 1112 211 111
Q ss_pred ccc---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC-cEEEEE
Q 017369 156 LDK---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT 205 (372)
Q Consensus 156 ~~~---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~li~~ 205 (372)
+.+ .. ..+.+|+|+-...- ...+..+.+.|++| |+++..
T Consensus 252 ~~~~i~~~-~~gg~D~vid~~g~----------~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 252 IQEVIVDL-TDGGVDYSFECIGN----------VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHHHHHHH-TTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHh-cCCCCCEEEECCCC----------HHHHHHHHHHhhccCCEEEEE
Confidence 100 01 12479999864332 14578888999997 987753
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.37 Score=44.30 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=61.3
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-ccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLD 157 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~ 157 (372)
.+.++.+||-.|| |.|..+..++.....+|+++|.+++.++.+++.+. ... .+ |..+. .+.
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g-------------~~~-~~--d~~~~~~~~ 215 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFG-------------FDD-AF--NYKEESDLT 215 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSC-------------CSE-EE--ETTSCSCSH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-------------Cce-EE--ecCCHHHHH
Confidence 4678999999997 45666666666555589999999988887764332 011 11 22211 110
Q ss_pred c---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 K---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. .. ..+.+|+|+..... ..+....+.|++||.++..
T Consensus 216 ~~~~~~-~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 216 AALKRC-FPNGIDIYFENVGG-----------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHHHHH-CTTCEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHH-hCCCCcEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence 0 01 12569999865431 2567888999999998753
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.57 Score=43.37 Aligned_cols=98 Identities=15% Similarity=0.064 Sum_probs=60.1
Q ss_pred HhCCCC------CEEEEecCCc-cccH-HHHH-HcCCCE-EEEEeCChH---HHHHHHHHhcCCCcccccccCCCcCeEE
Q 017369 80 LYARRG------DVVLDLACGK-GGDL-IKWD-KAKIGY-YVGIDIAEG---SIEDCRTRYNGDADHHQRRKKFSFPARL 146 (372)
Q Consensus 80 ~~~~~~------~~VLDlGcG~-G~~~-~~l~-~~~~~~-v~gvD~s~~---~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (372)
..+.++ .+||-+|+|. |..+ ..++ +..... |+++|.+++ -++.+++.. +..
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lG----------------a~~ 225 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD----------------ATY 225 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTT----------------CEE
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcC----------------Ccc
Confidence 345678 9999999864 5566 6676 543444 999999988 788776422 111
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+ |..+..+.+.....+.+|+|+-...- ...+..+.+.|++||.++..
T Consensus 226 v--~~~~~~~~~i~~~~gg~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 226 V--DSRQTPVEDVPDVYEQMDFIYEATGF----------PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp E--ETTTSCGGGHHHHSCCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred c--CCCccCHHHHHHhCCCCCEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence 2 32221111100001379999754332 13567788999999998753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.94 Score=41.54 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=61.0
Q ss_pred HHHhCCCCCEEEEecCCccc-cHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGKGG-DLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~-~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
......++.+||=+|+|.++ .+..+++ ....+|+++|.+++-++.+++.... .-+.....|..+.
T Consensus 157 ~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~------------~~i~~~~~~~~~~- 223 (348)
T 4eez_A 157 KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD------------VTINSGDVNPVDE- 223 (348)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS------------EEEEC-CCCHHHH-
T ss_pred cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe------------EEEeCCCCCHHHH-
Confidence 34456789999999998754 3444444 4566899999999888877764331 0111111111110
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+ ......+|.++....- ...+....+.|+++|.+++.
T Consensus 224 v~~-~t~g~g~d~~~~~~~~----------~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 224 IKK-ITGGLGVQSAIVCAVA----------RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp HHH-HTTSSCEEEEEECCSC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred hhh-hcCCCCceEEEEeccC----------cchhheeheeecCCceEEEE
Confidence 001 1123457766643221 24567788899999997754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=0.63 Score=43.37 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=61.5
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--cc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--VH 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~ 155 (372)
..+.++.+||-+|+|. |..+..+++.... .|+++|.+++-++.+++... ...+ |..+ ..
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi--~~~~~~~~ 253 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA---------------TDCL--NPRELDKP 253 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------SEEE--CGGGCSSC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC---------------cEEE--ccccccch
Confidence 3567899999999874 5566666665444 79999999998888864321 1111 2211 01
Q ss_pred cccccC--CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC-cEEEEE
Q 017369 156 LDKVLA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT 205 (372)
Q Consensus 156 ~~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~li~~ 205 (372)
+.+.+. ..+.+|+|+-.-.- ...+..+.+.|++| |.++..
T Consensus 254 ~~~~v~~~~~~g~Dvvid~~G~----------~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 254 VQDVITELTAGGVDYSLDCAGT----------AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHHHHHHHTSCBSEEEESSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHHHhCCCccEEEECCCC----------HHHHHHHHHHhhcCCCEEEEE
Confidence 100000 12379999854332 14567888999999 998753
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=0.33 Score=44.31 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=61.3
Q ss_pred hCCCCCEEEEec-CC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLA-CG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlG-cG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.++++.+||-.| +| .|..+..+++....+|+++|.+++-++.+++... ...+ |..+..+.+
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga---------------~~~~--~~~~~~~~~ 199 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA---------------WETI--DYSHEDVAK 199 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC---------------SEEE--ETTTSCHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------CEEE--eCCCccHHH
Confidence 457899999998 33 4666666666544589999999998888875432 1112 211111100
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+....- ..+....+.|++||.++..
T Consensus 200 ~~~~~~~~~g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 200 RVLELTDGKKCPVVYDGVGQ-----------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp HHHHHTTTCCEEEEEESSCG-----------GGHHHHHTTEEEEEEEEEC
T ss_pred HHHHHhCCCCceEEEECCCh-----------HHHHHHHHHhcCCCEEEEE
Confidence 0 1123579999865442 2456778899999998754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.67 E-value=0.21 Score=45.10 Aligned_cols=92 Identities=16% Similarity=0.075 Sum_probs=59.4
Q ss_pred CCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-ccccc
Q 017369 82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~ 158 (372)
+.++.+||-+|+ |.|..+..+++....+|+++|.+++.++.+++... . ..+ |..+ ..+.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga--------------~-~~~--~~~~~~~~~~ 185 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA--------------E-EAA--TYAEVPERAK 185 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC--------------S-EEE--EGGGHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC--------------C-EEE--ECCcchhHHH
Confidence 678999999998 34666667766555589999999988887754211 1 112 2221 11111
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+ ..+|+|+. ..- ..+....+.|+++|.++..
T Consensus 186 ~~---~~~d~vid-~g~-----------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 186 AW---GGLDLVLE-VRG-----------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp HT---TSEEEEEE-CSC-----------TTHHHHHTTEEEEEEEEEC
T ss_pred Hh---cCceEEEE-CCH-----------HHHHHHHHhhccCCEEEEE
Confidence 11 56999986 432 2457778899999988743
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.41 Score=43.84 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=61.0
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+||-.|+ |.|..+..+++....+|+++|.+++.++.+++... ...+ |..+..+.+
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---------------~~~~--~~~~~~~~~ 207 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA---------------EYLI--NASKEDILR 207 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEE--ETTTSCHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------cEEE--eCCCchHHH
Confidence 4578999999994 34656666666555589999999988887765321 1112 211111100
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+....- ..+..+.+.|++||.++..
T Consensus 208 ~~~~~~~~~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 208 QVLKFTNGKGVDASFDSVGK-----------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp HHHHHTTTSCEEEEEECCGG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred HHHHHhCCCCceEEEECCCh-----------HHHHHHHHHhccCCEEEEE
Confidence 0 0123579999865442 2456778899999998754
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.87 Score=42.22 Aligned_cols=97 Identities=16% Similarity=0.049 Sum_probs=61.3
Q ss_pred hCCCCCEEEEec--CCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLA--CGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlG--cG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.++++.+||-.| .|.|..+..+++....+|+++|.+++.++.+++... . ..+. ..+..+.+
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga--------------~-~~~~--~~~~~~~~ 222 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC--------------D-RPIN--YKTEPVGT 222 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC--------------S-EEEE--TTTSCHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCC--------------c-EEEe--cCChhHHH
Confidence 567899999999 345767777776555589999999988888765221 1 1121 11111100
Q ss_pred cc--CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VL--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+ .....+|+|+....- ..+..+.+.|+++|.++..
T Consensus 223 ~~~~~~~~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 223 VLKQEYPEGVDVVYESVGG-----------AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp HHHHHCTTCEEEEEECSCT-----------HHHHHHHHHEEEEEEEEEC
T ss_pred HHHHhcCCCCCEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence 00 012469999865431 3567788999999987753
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.09 E-value=0.44 Score=44.07 Aligned_cols=97 Identities=20% Similarity=0.124 Sum_probs=59.8
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+||-.|+ |.|..+..++.....+|+++|.+++.++.+++... . ..+ |..+..+.+
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga--------------~-~~~--d~~~~~~~~ 229 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA--------------H-EVF--NHREVNYID 229 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC--------------S-EEE--ETTSTTHHH
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCC--------------C-EEE--eCCCchHHH
Confidence 4678999999997 44666666666555589999999988887654211 1 111 222111100
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+....- ..+....+.|++||.++..
T Consensus 230 ~~~~~~~~~~~D~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 230 KIKKYVGEKGIDIIIEMLAN-----------VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp HHHHHHCTTCEEEEEESCHH-----------HHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHcCCCCcEEEEECCCh-----------HHHHHHHHhccCCCEEEEE
Confidence 0 0023479999865331 2456778999999998753
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=0.58 Score=43.26 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=59.9
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+||-.|+ |.|..+..++.....+|+++|.+++.++.+++... .. .+ |..+..+.+
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~--------------~~-~~--~~~~~~~~~ 221 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGA--------------AA-GF--NYKKEDFSE 221 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC--------------SE-EE--ETTTSCHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--------------cE-EE--ecCChHHHH
Confidence 4568899999984 45666666666555589999999998888854321 11 11 222111100
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+....-. .+....+.|++||.++..
T Consensus 222 ~~~~~~~~~~~d~vi~~~G~~-----------~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 222 ATLKFTKGAGVNLILDCIGGS-----------YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp HHHHHTTTSCEEEEEESSCGG-----------GHHHHHHHEEEEEEEEEC
T ss_pred HHHHHhcCCCceEEEECCCch-----------HHHHHHHhccCCCEEEEE
Confidence 0 00234699998655432 346677899999998753
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.01 E-value=2 Score=33.48 Aligned_cols=101 Identities=10% Similarity=-0.026 Sum_probs=58.7
Q ss_pred CCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
..+|+=+|||. |..+...+......|+++|.+++.++.++.. .+.++.+|..+....... .-
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~----------------~~~~~~gd~~~~~~l~~~-~~ 68 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE----------------GFDAVIADPTDESFYRSL-DL 68 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT----------------TCEEEECCTTCHHHHHHS-CC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC----------------CCcEEECCCCCHHHHHhC-Cc
Confidence 45789999975 3333333333344799999999887776542 256788888764321111 22
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
..+|+|++... + ......+....+.+. .+.++....+..
T Consensus 69 ~~~d~vi~~~~------~-~~~n~~~~~~a~~~~-~~~iia~~~~~~ 107 (141)
T 3llv_A 69 EGVSAVLITGS------D-DEFNLKILKALRSVS-DVYAIVRVSSPK 107 (141)
T ss_dssp TTCSEEEECCS------C-HHHHHHHHHHHHHHC-CCCEEEEESCGG
T ss_pred ccCCEEEEecC------C-HHHHHHHHHHHHHhC-CceEEEEEcChh
Confidence 56898876433 1 223333444455555 566666665553
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.95 E-value=3.3 Score=31.81 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=55.2
Q ss_pred CCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+.+|+=+|||. |..+...+......|+++|.+++.++.+.+.. .+.++.+|..+....... .-
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~d~~~~~~l~~~-~~ 67 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---------------DALVINGDCTKIKTLEDA-GI 67 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---------------SSEEEESCTTSHHHHHHT-TT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---------------CcEEEEcCCCCHHHHHHc-Cc
Confidence 46788888875 33332323333447999999988776654432 244567776542210000 12
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..+|+|+..... ......+..+.+.+.++ .++....+.
T Consensus 68 ~~~d~vi~~~~~-------~~~~~~~~~~~~~~~~~-~ii~~~~~~ 105 (140)
T 1lss_A 68 EDADMYIAVTGK-------EEVNLMSSLLAKSYGIN-KTIARISEI 105 (140)
T ss_dssp TTCSEEEECCSC-------HHHHHHHHHHHHHTTCC-CEEEECSST
T ss_pred ccCCEEEEeeCC-------chHHHHHHHHHHHcCCC-EEEEEecCH
Confidence 468988865322 22334455566667775 555554443
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.51 Score=43.40 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=61.9
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--c
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L 156 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~ 156 (372)
.+.++.+||-.|+ |.|..+..+++....+|++++.+++.++.+++... ..++..+ .+.. .
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---------------~~v~~~~-~~~~~~v 219 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA---------------DIVLPLE-EGWAKAV 219 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC---------------SEEEESS-TTHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC---------------cEEecCc-hhHHHHH
Confidence 4578999999997 34667777776655589999999988888876432 1122222 1110 0
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.. ....+|+|+....- ..+..+.+.|++||.++..
T Consensus 220 ~~~~-~~~g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 220 REAT-GGAGVDMVVDPIGG-----------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HHHT-TTSCEEEEEESCC-------------CHHHHHHTEEEEEEEEEC
T ss_pred HHHh-CCCCceEEEECCch-----------hHHHHHHHhhcCCCEEEEE
Confidence 0111 23479999865442 1456778899999998754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.76 E-value=1.4 Score=40.35 Aligned_cols=101 Identities=12% Similarity=0.029 Sum_probs=61.7
Q ss_pred HHHhCCCCCEEEEecCCccc-cHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGKGG-DLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~-~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
......++.+||=.|+|..+ .+..+++. +...++++|.+++-++.|++... ...+. ..+..
T Consensus 154 ~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa---------------~~~i~--~~~~~ 216 (346)
T 4a2c_A 154 HLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA---------------MQTFN--SSEMS 216 (346)
T ss_dssp HHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---------------SEEEE--TTTSC
T ss_pred HHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC---------------eEEEe--CCCCC
Confidence 34456789999999997644 44445544 45568999999998888876432 11222 11111
Q ss_pred cc---cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LD---KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~---~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. ..+.....+|+|+..... ...++...++|++||.+++.
T Consensus 217 ~~~~~~~~~~~~g~d~v~d~~G~----------~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 217 APQMQSVLRELRFNQLILETAGV----------PQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp HHHHHHHHGGGCSSEEEEECSCS----------HHHHHHHHHHCCTTCEEEEC
T ss_pred HHHHHHhhcccCCcccccccccc----------cchhhhhhheecCCeEEEEE
Confidence 10 001123568888754332 14567778899999998753
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=0.47 Score=44.14 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=59.6
Q ss_pred HHhCC-CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-
Q 017369 79 QLYAR-RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH- 155 (372)
Q Consensus 79 ~~~~~-~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~- 155 (372)
..... ++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++.+.. . .++ |..+..
T Consensus 181 ~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa-------------~-~v~--~~~~~~~ 244 (366)
T 1yqd_A 181 YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA-------------D-SFL--VSRDQEQ 244 (366)
T ss_dssp HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC-------------S-EEE--ETTCHHH
T ss_pred hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC-------------c-eEE--eccCHHH
Confidence 34556 899999999864 5556666665555899999999888777643321 1 112 211111
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
... ..+.+|+|+....... .++...+.|+++|.++..
T Consensus 245 ~~~---~~~~~D~vid~~g~~~----------~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 245 MQA---AAGTLDGIIDTVSAVH----------PLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp HHH---TTTCEEEEEECCSSCC----------CSHHHHHHEEEEEEEEEC
T ss_pred HHH---hhCCCCEEEECCCcHH----------HHHHHHHHHhcCCEEEEE
Confidence 111 1247999987654321 234566788999997753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.66 E-value=2.4 Score=34.74 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=59.3
Q ss_pred CCEEEEecCCc-cccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 85 GDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~-G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+.+|+=+|||. |..+...+... ...|+++|.+++.++.++.. .+..+.+|..+.........
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~----------------g~~~~~gd~~~~~~l~~~~~ 102 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE----------------GRNVISGDATDPDFWERILD 102 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT----------------TCCEEECCTTCHHHHHTBCS
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC----------------CCCEEEcCCCCHHHHHhccC
Confidence 56899999885 43333333333 44799999999887766532 14456777754321100001
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
-..+|+|++... + ......+-...+.+.|++.++..+.+..
T Consensus 103 ~~~ad~vi~~~~------~-~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 143 (183)
T 3c85_A 103 TGHVKLVLLAMP------H-HQGNQTALEQLQRRNYKGQIAAIAEYPD 143 (183)
T ss_dssp CCCCCEEEECCS------S-HHHHHHHHHHHHHTTCCSEEEEEESSHH
T ss_pred CCCCCEEEEeCC------C-hHHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence 246898886432 1 1222333345666778888887776654
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.42 E-value=0.47 Score=43.25 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=59.9
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+||-.|+ |.|..+..++.....+|+++|.+++.++.+++... .. .+ |..+..+.+
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~--------------~~-~~--~~~~~~~~~ 199 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA--------------WQ-VI--NYREEDLVE 199 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC--------------SE-EE--ETTTSCHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--------------CE-EE--ECCCccHHH
Confidence 4568899999994 44555666655444589999999988888765321 11 11 222111100
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+....- ..++.+.+.|++||.++..
T Consensus 200 ~~~~~~~~~~~D~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 200 RLKEITGGKKVRVVYDSVGR-----------DTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp HHHHHTTTCCEEEEEECSCG-----------GGHHHHHHTEEEEEEEEEC
T ss_pred HHHHHhCCCCceEEEECCch-----------HHHHHHHHHhcCCCEEEEE
Confidence 0 0023469999876541 3467788899999998753
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=89.40 E-value=0.37 Score=43.72 Aligned_cols=90 Identities=13% Similarity=-0.007 Sum_probs=57.9
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
..++++.+||=+|+|. |..+..+++....+|++++ +++-++.+++... ...+ .|. ..
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa---------------~~v~-~d~-----~~ 195 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGV---------------RHLY-REP-----SQ 195 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTE---------------EEEE-SSG-----GG
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCC---------------CEEE-cCH-----HH
Confidence 3567899999999964 6667777665444999999 9988888876432 1122 231 11
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+ ...+|+|+-...- ..+....++|++||.++..
T Consensus 196 -v--~~g~Dvv~d~~g~-----------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 196 -V--TQKYFAIFDAVNS-----------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp -C--CSCEEEEECC------------------TTGGGEEEEEEEEEE
T ss_pred -h--CCCccEEEECCCc-----------hhHHHHHHHhcCCCEEEEE
Confidence 1 4679999753321 1225667899999998765
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.33 E-value=0.7 Score=42.23 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=60.8
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+||-.|+ |.|..+..++.....+|+++|.+++.++.+++... .. .+ |..+....+
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~--------------~~-~~--d~~~~~~~~ 204 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGC--------------HH-TI--NYSTQDFAE 204 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC--------------SE-EE--ETTTSCHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC--------------CE-EE--ECCCHHHHH
Confidence 4568899999995 55666666666555589999999988888765321 11 11 222211100
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+....- ..++.+.+.|++||.++..
T Consensus 205 ~i~~~~~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 205 VVREITGGKGVDVVYDSIGK-----------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp HHHHHHTTCCEEEEEECSCT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred HHHHHhCCCCCeEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence 0 0012469999865432 2457778899999998754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.14 E-value=0.93 Score=42.05 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=60.6
Q ss_pred CCCEEEEec-CCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc--
Q 017369 84 RGDVVLDLA-CGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-- 158 (372)
Q Consensus 84 ~~~~VLDlG-cG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-- 158 (372)
++.+||=.| +|. |..+..+++. ...+|+++|.+++-++.+++... -.++ |..+ ++.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa---------------d~vi--~~~~-~~~~~v 232 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA---------------HHVI--DHSK-PLAAEV 232 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC---------------SEEE--CTTS-CHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC---------------CEEE--eCCC-CHHHHH
Confidence 688999998 554 7777777775 56799999999998888865321 1111 1111 1100
Q ss_pred -ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 -VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 -~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. ..+.+|+|+-...- ...+..+.++|++||.++..
T Consensus 233 ~~~-~~~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 233 AAL-GLGAPAFVFSTTHT----------DKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HTT-CSCCEEEEEECSCH----------HHHHHHHHHHSCTTCEEEEC
T ss_pred HHh-cCCCceEEEECCCc----------hhhHHHHHHHhcCCCEEEEE
Confidence 01 23579999764321 24667888999999998754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.09 E-value=1.9 Score=40.84 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=68.1
Q ss_pred CCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
..+|+=+|||. |..+...+......|+++|.+++.++.++.. .+.++.+|+.+...-... .-
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~----------------g~~vi~GDat~~~~L~~a-gi 66 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF----------------GMKVFYGDATRMDLLESA-GA 66 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT----------------TCCCEESCTTCHHHHHHT-TT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC----------------CCeEEEcCCCCHHHHHhc-CC
Confidence 45788899876 4444444444444799999999999888642 245688998875432111 23
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
..+|+|++... + ......+....+.+.|...++....+...
T Consensus 67 ~~A~~viv~~~------~-~~~n~~i~~~ar~~~p~~~Iiara~~~~~ 107 (413)
T 3l9w_A 67 AKAEVLINAID------D-PQTNLQLTEMVKEHFPHLQIIARARDVDH 107 (413)
T ss_dssp TTCSEEEECCS------S-HHHHHHHHHHHHHHCTTCEEEEEESSHHH
T ss_pred CccCEEEECCC------C-hHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 57898876432 1 34455566677788899888888776643
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=0.83 Score=41.46 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=57.6
Q ss_pred EEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 87 VVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 87 ~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
+||=.|+ |.|..+..+++....+|+++|.+++-++.+++.-.. ..+ |..+......+ ..+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------------~vi--~~~~~~~~~~~-~~~ 210 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGAN---------------RIL--SRDEFAESRPL-EKQ 210 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCS---------------EEE--EGGGSSCCCSS-CCC
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---------------EEE--ecCCHHHHHhh-cCC
Confidence 4999987 357777777776555899999999988888764321 111 11111111111 235
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+|+|+-... . ..+..+.+.|+++|.++..
T Consensus 211 ~~d~v~d~~g-------~----~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 211 LWAGAIDTVG-------D----KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp CEEEEEESSC-------H----HHHHHHHHTEEEEEEEEEC
T ss_pred CccEEEECCC-------c----HHHHHHHHHHhcCCEEEEE
Confidence 7998875322 1 2678888999999998754
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.90 E-value=0.92 Score=41.45 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=43.2
Q ss_pred CeEEEECcCcc-cccccccCCCCCeeEEEeccccccc----CCC------HHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 143 PARLICGDCYE-VHLDKVLADDAPFDICSCQFAMHYS----WST------EARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 143 ~~~~~~~D~~~-~~~~~~~~~~~~fD~V~~~~~l~~~----~~~------~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
...++++|+.+ +.. + ++++||+|++.--.... +.. .......+.++.++|+|||.+++.+.+.
T Consensus 14 ~~~ii~gD~~~~l~~---l-~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 14 NGSMYIGDSLELLES---F-PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SEEEEESCHHHHGGG---S-CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CceEEeCcHHHHHhh---C-CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 57889999875 221 1 56899999997422110 000 1346788999999999999999887653
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.87 E-value=0.59 Score=43.19 Aligned_cols=97 Identities=18% Similarity=0.083 Sum_probs=61.1
Q ss_pred hCCCCCEEEEecC-C-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.++++.+||-.|+ | .|..+..+++....+|+++|.+++.++.+++... ...+ |..+..+.+
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~~~--~~~~~~~~~ 226 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA---------------KRGI--NYRSEDFAA 226 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC---------------SEEE--ETTTSCHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC---------------CEEE--eCCchHHHH
Confidence 4678999999953 3 4666777776555589999999999888876432 1112 221111110
Q ss_pred ccC--CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+. ....+|+|+....-. .+....+.|++||.++..
T Consensus 227 ~~~~~~~~g~Dvvid~~g~~-----------~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 227 VIKAETGQGVDIILDMIGAA-----------YFERNIASLAKDGCLSII 264 (353)
T ss_dssp HHHHHHSSCEEEEEESCCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred HHHHHhCCCceEEEECCCHH-----------HHHHHHHHhccCCEEEEE
Confidence 000 135799998754421 456778899999998754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=0.3 Score=44.97 Aligned_cols=97 Identities=19% Similarity=0.043 Sum_probs=58.6
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..+ ++.+||-+|+|. |..+..+++.... +|+++|.+++.++.+++. . ..++ |..+..+.
T Consensus 161 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a---------------~~v~--~~~~~~~~ 221 (343)
T 2dq4_A 161 SGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A---------------DRLV--NPLEEDLL 221 (343)
T ss_dssp TCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C---------------SEEE--CTTTSCHH
T ss_pred CCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H---------------Hhcc--CcCccCHH
Confidence 345 889999999864 5566666665444 799999998776655432 1 1111 22111111
Q ss_pred cccC--CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KVLA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+. ....+|+|+....- ...++...+.|+++|.++..
T Consensus 222 ~~~~~~~~~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 222 EVVRRVTGSGVEVLLEFSGN----------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp HHHHHHHSSCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHhcCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 0000 12469999864432 13567788899999987753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=88.61 E-value=1.1 Score=41.10 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=59.2
Q ss_pred CCCEEEEe-cCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-c--cccc
Q 017369 84 RGDVVLDL-ACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-V--HLDK 158 (372)
Q Consensus 84 ~~~~VLDl-GcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~--~~~~ 158 (372)
++.+||=. |+|. |..+..+++....+|+++|.+++-++.+++.... ..+ |..+ . .+..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------------~vi--~~~~~~~~~~~~ 212 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD---------------IVL--NHKESLLNQFKT 212 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS---------------EEE--CTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc---------------EEE--ECCccHHHHHHH
Confidence 78999999 4543 6666666665555999999999988888774321 111 1111 0 0001
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ....+|+|+....- ...+..+.++|+++|.++..
T Consensus 213 -~-~~~g~Dvv~d~~g~----------~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 213 -Q-GIELVDYVFCTFNT----------DMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp -H-TCCCEEEEEESSCH----------HHHHHHHHHHEEEEEEEEES
T ss_pred -h-CCCCccEEEECCCc----------hHHHHHHHHHhccCCEEEEE
Confidence 1 23579999864321 24567888999999998753
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=88.49 E-value=0.36 Score=44.75 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=58.6
Q ss_pred HHhCC-CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 79 QLYAR-RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 79 ~~~~~-~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
..... ++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++.+.. . .++..+-.+ ..
T Consensus 174 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa-------------~-~vi~~~~~~-~~ 238 (357)
T 2cf5_A 174 HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGA-------------D-DYVIGSDQA-KM 238 (357)
T ss_dssp HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCC-------------S-CEEETTCHH-HH
T ss_pred hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCC-------------c-eeeccccHH-HH
Confidence 34556 899999999864 5555666654445899999999887777633320 1 111111000 01
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. ..+.+|+|+-.-.-. ..+....+.|++||.++..
T Consensus 239 ~~---~~~g~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 239 SE---LADSLDYVIDTVPVH----------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp HH---STTTEEEEEECCCSC----------CCSHHHHTTEEEEEEEEEC
T ss_pred HH---hcCCCCEEEECCCCh----------HHHHHHHHHhccCCEEEEe
Confidence 11 124699998654422 1235567899999998753
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=1.3 Score=35.45 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=57.8
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|+=+|||. |..+...+......|+++|.+++.++.++. ...+.++.+|..+.......
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---------------~~g~~~~~~d~~~~~~l~~~- 80 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---------------EFSGFTVVGDAAEFETLKEC- 80 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---------------TCCSEEEESCTTSHHHHHTT-
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---------------cCCCcEEEecCCCHHHHHHc-
Confidence 3578999999976 444444443334489999999865433221 01244566775432210000
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
.-..+|+|+....- ......+..+.+.+.+...++....+..
T Consensus 81 ~~~~ad~Vi~~~~~-------~~~~~~~~~~~~~~~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 81 GMEKADMVFAFTND-------DSTNFFISMNARYMFNVENVIARVYDPE 122 (155)
T ss_dssp TGGGCSEEEECSSC-------HHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred CcccCCEEEEEeCC-------cHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 12468988865332 2334445555666666677776665543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=87.97 E-value=1 Score=42.20 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--------CCCEEEEEeCChHHHHHHHHHhc
Q 017369 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 68 ~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
.+..|+..+......+....|+|+|.|+|.++..+++. ...+|+.||+|+...+.-++++.
T Consensus 64 ~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 132 (387)
T 1zkd_A 64 LLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 132 (387)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence 34455555555554445568999999999987776542 22379999999988887666664
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=87.94 E-value=0.71 Score=48.70 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=52.7
Q ss_pred CCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-------
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH------- 155 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------- 155 (372)
+..+++||.||-|+++.-+..++. ..+.++|+++.+++.-+.+.. ...++.+|+.++.
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p--------------~~~~~~~DI~~l~~~~~~~d 604 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP--------------GSTVFTEDCNILLKLVMAGE 604 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT--------------TSEEECSCHHHHHHHHHHTC
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC--------------CCccccccHHHHhhhccchh
Confidence 346899999999999998877776 458899999999888777654 2455666654321
Q ss_pred c----ccccCCCCCeeEEEecc
Q 017369 156 L----DKVLADDAPFDICSCQF 173 (372)
Q Consensus 156 ~----~~~~~~~~~fD~V~~~~ 173 (372)
+ ...++..+.+|+|+...
T Consensus 605 i~~~~~~~lp~~~~vDll~GGp 626 (1002)
T 3swr_A 605 TTNSRGQRLPQKGDVEMLCGGP 626 (1002)
T ss_dssp SBCTTCCBCCCTTTCSEEEECC
T ss_pred hhhhhhhhcccCCCeeEEEEcC
Confidence 0 01111235799998765
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=2 Score=43.59 Aligned_cols=115 Identities=14% Similarity=0.209 Sum_probs=62.9
Q ss_pred CCCCEEEEecCCccccHHHHHHc-----------CC--CEEEEEeC---ChHHHHHHHHHhcC-----------CCcc--
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-----------KI--GYYVGIDI---AEGSIEDCRTRYNG-----------DADH-- 133 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-----------~~--~~v~gvD~---s~~~l~~a~~~~~~-----------~~~~-- 133 (372)
.+..+|+|+|.|+|...+..... .. -+++.+|. +.+.+..|-..+.. ....
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 34579999999999865544331 11 35899999 44444433222110 0000
Q ss_pred cccccCC---CcCeEEEECcCccccccccc-CCCCCeeEEEeccccc----ccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 134 HQRRKKF---SFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMH----YSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 134 ~~~~~~~---~~~~~~~~~D~~~~~~~~~~-~~~~~fD~V~~~~~l~----~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
...+-.+ ...++++.+|+.+.- .... .....+|.++....-- -+| -..++..+.++++|||.+.
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l-~~~~~~~~~~~da~flD~f~p~~np~~w-----~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLL-PTLDDSLNNQVDAWFLDGFAPAKNPDMW-----NEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHG-GGCCGGGTTCEEEEEECSSCC--CCTTC-----SHHHHHHHHHHEEEEEEEE
T ss_pred CceEEEecCCcEEEEEEccCHHHHH-hhcccccCCceeEEEECCCCCCCChhhh-----hHHHHHHHHHHhCCCCEEE
Confidence 0000001 125677888886532 1110 0146899998754211 011 1478899999999999764
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=1.4 Score=40.75 Aligned_cols=91 Identities=14% Similarity=-0.046 Sum_probs=55.9
Q ss_pred CCEEEEecCCc-cccHHHHHHcCCCEEEEEeCCh---HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAE---GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 85 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
+.+||-+|+|. |..+..+++....+|+++|.++ +.++.+++.. +..+ | .+ .+.+.+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~g----------------a~~v--~-~~-~~~~~~ 240 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK----------------TNYY--N-SS-NGYDKL 240 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHT----------------CEEE--E-CT-TCSHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhC----------------Ccee--c-hH-HHHHHH
Confidence 89999999843 4445555554334899999998 7777776432 1112 3 22 211000
Q ss_pred C-CCCCeeEEEecccccccCCCHHHHHHHH-HHHHHhcCCCcEEEEE
Q 017369 161 A-DDAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 ~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l-~~i~~~LkpgG~li~~ 205 (372)
. ..+.+|+|+...... ..+ +.+.+.|++||.++..
T Consensus 241 ~~~~~~~d~vid~~g~~----------~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 241 KDSVGKFDVIIDATGAD----------VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp HHHHCCEEEEEECCCCC----------THHHHHHGGGEEEEEEEEEC
T ss_pred HHhCCCCCEEEECCCCh----------HHHHHHHHHHHhcCCEEEEE
Confidence 0 015699998755432 244 7788999999998754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.64 E-value=4.9 Score=31.74 Aligned_cols=105 Identities=10% Similarity=-0.056 Sum_probs=59.4
Q ss_pred CCEEEEecCCc-cccHHHHHHcCCCEEEEEeCCh-HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAE-GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
..+|+=+|||. |..+...+......|+.+|.++ +..+....... ..+.++.+|..+....... .
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a-~ 68 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-------------DNADVIPGDSNDSSVLKKA-G 68 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-------------TTCEEEESCTTSHHHHHHH-T
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-------------CCCeEEEcCCCCHHHHHHc-C
Confidence 35678788764 2222222223344799999974 54444443332 1367889998754321110 1
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
-..+|+|++...- ......+....+.+.|...++....+..
T Consensus 69 i~~ad~vi~~~~~-------d~~n~~~~~~a~~~~~~~~ii~~~~~~~ 109 (153)
T 1id1_A 69 IDRCRAILALSDN-------DADNAFVVLSAKDMSSDVKTVLAVSDSK 109 (153)
T ss_dssp TTTCSEEEECSSC-------HHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred hhhCCEEEEecCC-------hHHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence 2568888764321 3345566667777778777777665543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=86.44 E-value=2.5 Score=40.44 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=36.0
Q ss_pred hCCCCCEEEEecC-C-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHH
Q 017369 81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR 126 (372)
Q Consensus 81 ~~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~ 126 (372)
.+.++.+||=+|+ | .|..+..+++....++++++.+++-++.+++.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l 272 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM 272 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh
Confidence 4578999999997 4 46677777776666899999999988888664
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=1.8 Score=39.83 Aligned_cols=99 Identities=13% Similarity=-0.019 Sum_probs=60.6
Q ss_pred HhCCCC--CEEEEecC--CccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 80 LYARRG--DVVLDLAC--GKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 80 ~~~~~~--~~VLDlGc--G~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
..+.++ .+||-.|+ |.|..+..++..... +|+++|.+++.++.+++.+. ... .+ |..+.
T Consensus 154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g-------------~~~-~~--d~~~~ 217 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELG-------------FDA-AI--NYKKD 217 (357)
T ss_dssp SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC-------------CSE-EE--ETTTS
T ss_pred cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC-------------Cce-EE--ecCch
Confidence 456788 99999998 345556666655455 89999999887777765332 011 11 22221
Q ss_pred ccccccC--CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 155 HLDKVLA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 155 ~~~~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.+.+. ..+.+|+|+....- ..+..+.++|++||.++..
T Consensus 218 ~~~~~~~~~~~~~~d~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 218 NVAEQLRESCPAGVDVYFDNVGG-----------NISDTVISQMNENSHIILC 259 (357)
T ss_dssp CHHHHHHHHCTTCEEEEEESCCH-----------HHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCEEEECCCH-----------HHHHHHHHHhccCcEEEEE
Confidence 1100000 11279999865431 4567888999999998753
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.26 E-value=3.8 Score=34.62 Aligned_cols=98 Identities=11% Similarity=-0.008 Sum_probs=58.9
Q ss_pred EEEEecCCccccHHHHH---HcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 87 VVLDLACGKGGDLIKWD---KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+|+=+|+|. ....++ ......|+.+|.+++.++...+.. .+.++.+|..+....... .-
T Consensus 2 ~iiIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~---------------~~~~i~gd~~~~~~l~~a-~i 63 (218)
T 3l4b_C 2 KVIIIGGET--TAYYLARSMLSRKYGVVIINKDRELCEEFAKKL---------------KATIIHGDGSHKEILRDA-EV 63 (218)
T ss_dssp CEEEECCHH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS---------------SSEEEESCTTSHHHHHHH-TC
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc---------------CCeEEEcCCCCHHHHHhc-Cc
Confidence 467777754 433333 233447999999998887655432 256789998764321110 12
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..+|+|++...- +.....+..+.+.+.|...++..+.+.
T Consensus 64 ~~ad~vi~~~~~-------d~~n~~~~~~a~~~~~~~~iia~~~~~ 102 (218)
T 3l4b_C 64 SKNDVVVILTPR-------DEVNLFIAQLVMKDFGVKRVVSLVNDP 102 (218)
T ss_dssp CTTCEEEECCSC-------HHHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred ccCCEEEEecCC-------cHHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence 578988864321 334455666667777777777666544
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=85.22 E-value=3.6 Score=37.17 Aligned_cols=96 Identities=20% Similarity=0.107 Sum_probs=59.0
Q ss_pred HHHhCCCCCEEEEec-CC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLA-CG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlG-cG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
....+.++.+||=+| +| .|..+..+++....+|++++ ++..++.+++... -..+ |..+..
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa---------------~~~i--~~~~~~ 207 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGA---------------EQCI--NYHEED 207 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTC---------------SEEE--ETTTSC
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCC---------------CEEE--eCCCcc
Confidence 445678999999996 55 46677777776555899887 5555666665322 1122 222211
Q ss_pred -cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+ .-..+|+|+-.-.- ..+....++|++||.++..
T Consensus 208 ~~~~---~~~g~D~v~d~~g~-----------~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 208 FLLA---ISTPVDAVIDLVGG-----------DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp HHHH---CCSCEEEEEESSCH-----------HHHHHHGGGEEEEEEEEEC
T ss_pred hhhh---hccCCCEEEECCCc-----------HHHHHHHHhccCCCEEEEe
Confidence 111 12569999864331 1237788999999998764
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.19 E-value=1.1 Score=41.58 Aligned_cols=98 Identities=20% Similarity=0.126 Sum_probs=57.2
Q ss_pred CCCCCEEEEec-CC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLA-CG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlG-cG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+.++.+||=.| +| .|..+..+++....+|++++ +++-++.+++... . ..+ |..+..+.+.
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa--------------~-~v~--~~~~~~~~~~ 242 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGA--------------D-DVI--DYKSGSVEEQ 242 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC--------------S-EEE--ETTSSCHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCC--------------C-EEE--ECCchHHHHH
Confidence 56889999998 44 46666677665555899998 7766666643211 1 112 2211111111
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.....+|+|+..-.-. ...+....+.|++||.++...
T Consensus 243 ~~~~~g~D~vid~~g~~---------~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 243 LKSLKPFDFILDNVGGS---------TETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp HHTSCCBSEEEESSCTT---------HHHHGGGGBCSSSCCEEEESC
T ss_pred HhhcCCCCEEEECCCCh---------hhhhHHHHHhhcCCcEEEEeC
Confidence 10224699998654321 123466678899999987643
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=85.08 E-value=6.2 Score=35.69 Aligned_cols=90 Identities=19% Similarity=0.085 Sum_probs=54.8
Q ss_pred CCEEEEecCCc-cc-cHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 85 GDVVLDLACGK-GG-DLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 85 ~~~VLDlGcG~-G~-~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+|.=||+|. |. ++..+...+.. .|+++|.+++.++.+.+... +.-...|..+..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~---------------~~~~~~~~~~~~------ 91 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---------------IDEGTTSIAKVE------ 91 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---------------CSEEESCTTGGG------
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC---------------cchhcCCHHHHh------
Confidence 36899999986 32 33344444432 79999999988877754211 101222332201
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
-...|+|+..--.. ....+++++...|+||..++
T Consensus 92 -~~~aDvVilavp~~-------~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 92 -DFSPDFVMLSSPVR-------TFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp -GGCCSEEEECSCGG-------GHHHHHHHHHHHSCTTCEEE
T ss_pred -hccCCEEEEeCCHH-------HHHHHHHHHhhccCCCcEEE
Confidence 13579988654332 35578888999999987654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=84.89 E-value=3 Score=40.07 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=60.8
Q ss_pred CCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.++|+=+|||. |..+...+......|+.+|.+++.++.+..++. +..++||+.+...-..- .-
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~---------------~~~i~Gd~~~~~~L~~A-gi 66 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYD---------------LRVVNGHASHPDVLHEA-GA 66 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSS---------------CEEEESCTTCHHHHHHH-TT
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC---------------cEEEEEcCCCHHHHHhc-CC
Confidence 46888888875 333333333334469999999999988877653 67899999875431111 23
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
...|++++.-. .+...-+...+++.+-+.-..+..+-++
T Consensus 67 ~~ad~~ia~t~-------~De~Nl~~~~~Ak~~~~~~~~iar~~~~ 105 (461)
T 4g65_A 67 QDADMLVAVTN-------TDETNMAACQVAFTLFNTPNRIARIRSP 105 (461)
T ss_dssp TTCSEEEECCS-------CHHHHHHHHHHHHHHHCCSSEEEECCCH
T ss_pred CcCCEEEEEcC-------ChHHHHHHHHHHHHhcCCccceeEeccc
Confidence 57898875211 1333344444555554444445444443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.90 E-value=1.3 Score=40.25 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=57.4
Q ss_pred hCCCCC-EEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC-cCccccc
Q 017369 81 YARRGD-VVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHL 156 (372)
Q Consensus 81 ~~~~~~-~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~ 156 (372)
.+.++. +||-+|+ |.|..+..+++....+|++++.+++-++.+++... . ..+.. +......
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa--------------~-~~i~~~~~~~~~~ 209 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA--------------K-EVLAREDVMAERI 209 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC--------------S-EEEECC-------
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC--------------c-EEEecCCcHHHHH
Confidence 456665 8999997 44666777776555579999999888888765221 0 11111 1100000
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. .. ....+|+|+-...- ..+....+.|++||.++..
T Consensus 210 ~-~~-~~~~~d~vid~~g~-----------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 210 R-PL-DKQRWAAAVDPVGG-----------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp ---C-CSCCEEEEEECSTT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred H-Hh-cCCcccEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence 0 01 23479998764332 1356778899999998753
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=82.92 E-value=2.5 Score=38.73 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=60.2
Q ss_pred HhCCCCCEEEEecC-C-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--
Q 017369 80 LYARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-- 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-- 155 (372)
..+.++.+||-+|+ | .|..+..+++....+|+++ .+++.++.+++... ..+. +-.+..
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa----------------~~i~-~~~~~~~~ 207 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGA----------------TPID-ASREPEDY 207 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTS----------------EEEE-TTSCHHHH
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCC----------------CEec-cCCCHHHH
Confidence 35678999999994 3 4666777776655589999 88888887765422 1122 111110
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..... ....+|+|+-.-.- ..+....+.|+++|.++..
T Consensus 208 ~~~~~-~~~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 208 AAEHT-AGQGFDLVYDTLGG-----------PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp HHHHH-TTSCEEEEEESSCT-----------HHHHHHHHHEEEEEEEEES
T ss_pred HHHHh-cCCCceEEEECCCc-----------HHHHHHHHHHhcCCeEEEE
Confidence 00001 23579999864331 3567778899999998753
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=82.71 E-value=10 Score=32.84 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCCEEEEecCCccc---cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc-
Q 017369 84 RGDVVLDLACGKGG---DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV- 159 (372)
Q Consensus 84 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~- 159 (372)
.+.+||=.|++.|. .+..+++. ..+|+.+|.+++.++...+... .++.++.+|+.+..-...
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v~~~ 72 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEG-GAEVLLTGRNESNIARIREEFG-------------PRVHALRSDIADLNEIAVL 72 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG-------------GGEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhC-------------CcceEEEccCCCHHHHHHH
Confidence 46788988877653 23333333 4489999999988877666542 257889999876431100
Q ss_pred ----cCCCCCeeEEEeccccccc----CCCHHHHHH-----------HHHHHHHhcCCCcEEEEE
Q 017369 160 ----LADDAPFDICSCQFAMHYS----WSTEARARR-----------ALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ----~~~~~~fD~V~~~~~l~~~----~~~~~~~~~-----------~l~~i~~~LkpgG~li~~ 205 (372)
....+..|+++.+...... -.+.+++.. +.+.+...++++|.++..
T Consensus 73 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 73 GAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 0012579999887644321 013344433 334555666778877654
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=82.07 E-value=2.5 Score=40.15 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc------CCCEEEEEeCChHHHHHHHHHhc
Q 017369 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 68 ~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
.+-.|+..++.... ...|+|+|.|+|.++..+++. ...+|+.||+|+.+.+.-++++.
T Consensus 124 ~la~~~~~~~~~~g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 124 TLARPVAQALDASG---TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp HHHHHHHHHHHHHT---CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 34556655555543 479999999999977766542 13479999999998887777664
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=81.64 E-value=1.6 Score=39.59 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=58.0
Q ss_pred hCCCCC-EEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC-cCccccc
Q 017369 81 YARRGD-VVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHL 156 (372)
Q Consensus 81 ~~~~~~-~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~ 156 (372)
.+.++. +||-.|+ |.|..+..+++....+|++++.+++-++.+++.... ..+.. +......
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~---------------~v~~~~~~~~~~~ 210 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS---------------EVISREDVYDGTL 210 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS---------------EEEEHHHHCSSCC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------------EEEECCCchHHHH
Confidence 456665 8999997 346566666664444799999998888887653221 11111 1100000
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. .. ....+|+|+....- ..+....+.|++||.++..
T Consensus 211 ~-~~-~~~~~d~vid~~g~-----------~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 211 K-AL-SKQQWQGAVDPVGG-----------KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp C-SS-CCCCEEEEEESCCT-----------HHHHHHHTTEEEEEEEEEC
T ss_pred H-Hh-hcCCccEEEECCcH-----------HHHHHHHHhhcCCCEEEEE
Confidence 0 01 23469998754321 2467788899999998753
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=81.48 E-value=2.9 Score=39.82 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=35.4
Q ss_pred HhCCCCCEEEEecC-C-ccccHHHHHHcCCCEEEEEeCChHHHHHHHH
Q 017369 80 LYARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 80 ~~~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 125 (372)
..+.++.+||=.|+ | .|..+..+++....++++++.+++-++.+++
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~ 263 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA 263 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 34678999999997 3 4666677776666689999999988888854
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=80.76 E-value=2.9 Score=42.19 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=70.2
Q ss_pred CCCEEEEecCCccccHHHHHHc-----------CC--CEEEEEeC---ChHHHHHHHHHhcC-----------CC---cc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-----------KI--GYYVGIDI---AEGSIEDCRTRYNG-----------DA---DH 133 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-----------~~--~~v~gvD~---s~~~l~~a~~~~~~-----------~~---~~ 133 (372)
+.-+|||+|.|+|......... .. -+++++|. +.+.+..+-..+.. .. ..
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 4469999999999855443321 11 25899999 77777644332111 00 00
Q ss_pred cccc--cCCCcCeEEEECcCccccccccc-CCCCCeeEEEeccccc----ccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 134 HQRR--KKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMH----YSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 134 ~~~~--~~~~~~~~~~~~D~~~~~~~~~~-~~~~~fD~V~~~~~l~----~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++. ..-...+++..+|+.+.- .... .....||+++....-. -+|+ ..++..+.++++|||.+....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l-~~~~~~~~~~~d~~~~D~f~p~~np~~w~-----~~~~~~l~~~~~~g~~~~t~~ 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELT-SQLDDSLNQKVDAWFLDGFAPAKNPDMWT-----QNLFNAMARLARPGGTLATFT 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHG-GGBCGGGTTCEEEEEECCSCGGGCGGGSC-----HHHHHHHHHHEEEEEEEEESC
T ss_pred ceEEEecCCcEEEEEecCCHHHHH-HhcccccCCcccEEEECCCCCcCChhhhh-----HHHHHHHHHHhCCCCEEEecc
Confidence 0000 000124556777776521 1110 0136799998743211 1121 468899999999999865333
Q ss_pred CChHHHHHHHhhh
Q 017369 207 PDANVIIKKLREV 219 (372)
Q Consensus 207 ~~~~~~~~~l~~~ 219 (372)
....+...+.+.
T Consensus 220 -~~~~vr~~L~~a 231 (676)
T 3ps9_A 220 -SAGFVRRGLQDA 231 (676)
T ss_dssp -CCHHHHHHHHHH
T ss_pred -CcHHHHHHHHhC
Confidence 334555555554
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=80.04 E-value=1.4 Score=35.40 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=59.1
Q ss_pred CCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc-ccCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-VLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~~ 162 (372)
..-|||+|-|+|+.--.+.... ...++.+|-.-. ......+..-.++.+|+.+.--.- .. -
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~----------------~hp~~~P~~e~~ilGdi~~tL~~~~~r-~ 103 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVA----------------SHPDSTPPEAQLILGDIRETLPATLER-F 103 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCC----------------CCGGGCCCGGGEEESCHHHHHHHHHHH-H
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeec----------------cCCCCCCchHheecccHHHHHHHHHHh-c
Confidence 4569999999999888887653 445999996321 011222344567888876531100 00 0
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+.-++-+....++--.+......+-.-+..+|.|||+++-..|
T Consensus 104 g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~p 148 (174)
T 3iht_A 104 GATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDR 148 (174)
T ss_dssp CSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 345556666555554200000111222345678999999876543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 372 | ||||
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 6e-54 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 7e-11 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 1e-10 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 7e-10 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 5e-09 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 3e-08 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-07 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 1e-06 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 8e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 9e-06 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-05 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 3e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 6e-05 | |
| d1af7a2 | 193 | c.66.1.8 (A:92-284) Chemotaxis receptor methyltran | 1e-04 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-04 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.001 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 0.002 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 0.002 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 0.002 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.002 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.002 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 0.003 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 0.003 | |
| d2as0a2 | 324 | c.66.1.51 (A:73-396) Hypothetical protein PH1915, | 0.004 |
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 176 bits (447), Expect = 6e-54
Identities = 95/281 (33%), Positives = 140/281 (49%), Gaps = 31/281 (11%)
Query: 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
S I+++ NN+IK+ L++LY +RGD VLDL CGKGGDL+K+++A IG Y G+DIAE SI
Sbjct: 1 SKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI 60
Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
D R R K F D Y H+D FD+ S QF+ HY++S
Sbjct: 61 NDARVRARN--------MKRRFKVFFRAQDSYGRHMD----LGKEFDVISSQFSFHYAFS 108
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
T A N++ LRPGG FI T+P +VI+++ ++ + N Y I +K
Sbjct: 109 TSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGR---MSNDFYKI-----ELEK 160
Query: 241 KFKSSRPFGIQYKFHLEDAV-DCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKK 299
+Y+F L D+V +C E+ V F + L LV K +F + ++
Sbjct: 161 MEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRR 220
Query: 300 PEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRK 340
EL +++G L+ +E EV +Y V RK
Sbjct: 221 --NPELSKKMGL--------GCLTREESEVVGIYEVVVFRK 251
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.0 bits (144), Expect = 7e-11
Identities = 44/261 (16%), Positives = 83/261 (31%), Gaps = 24/261 (9%)
Query: 32 EDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDL 91
S V A + D Y+ + + + + +L L VLD+
Sbjct: 6 RTRSLGVAAEGIPDQYADGEAARVWQLYIGD--TRSRTAEYKAWLLGLLRQHGCHRVLDV 63
Query: 92 ACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150
ACG G D I + G+ V +D ++ ++ RRK+ +F +I
Sbjct: 64 ACGTGVDSIML--VEEGFSVTSVDASDKMLKYALKER------WNRRKEPAFDKWVIEEA 115
Query: 151 CYEVHLDKVLADDAPFDICSCQFAMHY---SWSTEARARRALANVSALLRPGGTFIGTMP 207
+ V A D + + + S ++ R AL N+++++RPGG +
Sbjct: 116 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175
Query: 208 DANVIIKK----------LREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLE 257
+ + I+ + I SV + + P +
Sbjct: 176 NYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGF 235
Query: 258 DAVDCPEWIVPFHIFKSLAEE 278
+ F L +E
Sbjct: 236 SKFRLSYYPHCLASFTELVQE 256
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.9 bits (141), Expect = 1e-10
Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 26/179 (14%)
Query: 45 DHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK 104
Y E E +L+ L+ +GD ++D+ G +
Sbjct: 18 ATYYSFDGSPSPEAEMLKF-NLECLHKTFGPGG-----LQGDTLIDIGSGPTIYQVLAAC 71
Query: 105 AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC------------- 151
D + + E+ + + F L
Sbjct: 72 DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV 131
Query: 152 -----YEVHLDKVLA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
+VHL LA D AM + + R AL N+++LL+PGG +
Sbjct: 132 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV 190
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 55.9 bits (133), Expect = 7e-10
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 10/142 (7%)
Query: 65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR 124
H ++N ++ L G VL CGK D+ W + + VG +++E ++E
Sbjct: 1 HQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMS-WLSGQGYHVVGAELSEAAVERYF 59
Query: 125 TRYNGDADHHQRRKKFSFP---ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST 181
T + + + CGD + + + A +D +
Sbjct: 60 TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMR-- 117
Query: 182 EARARRALANVSALLRPGGTFI 203
R + ++ AL+ + +
Sbjct: 118 ----ERYVQHLEALMPQACSGL 135
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (129), Expect = 5e-09
Identities = 31/265 (11%), Positives = 69/265 (26%), Gaps = 47/265 (17%)
Query: 69 LNNWIKSVLVQLYARRGDV-----VLDLACGKGGDLIKWDKAKI-------GYYVGIDIA 116
+ ++ L + R GD +L + G G ++ ++ +
Sbjct: 20 MQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS 79
Query: 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH 176
I + ++ + + + +D ++
Sbjct: 80 AEQIAKYKELVAKISNLENVKFAWHK-----ETSSEYQSRMLEKKELQKWDFIHMIQMLY 134
Query: 177 YSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEE 236
Y A L +LL + + + KL + Y R ++
Sbjct: 135 YVKDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWK---------KYGSRFPQD 181
Query: 237 FADKKFKSS------RPFGIQY-KFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVF---V 286
+ S G++Y + L +D + F E DL F
Sbjct: 182 DLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISD------CFIDGNENGDLLWDFLTET 235
Query: 287 KNSHEFVHEYLKKPEYIELMRRLGA 311
N + L+ E + ++
Sbjct: 236 CNFNATAPPDLRA-ELGKDLQEPEF 259
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 3e-08
Identities = 23/165 (13%), Positives = 41/165 (24%), Gaps = 25/165 (15%)
Query: 68 KLNNWIKSVLVQLYA---RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR 124
+ W L Q +A G ++D+ G + + D E + ++
Sbjct: 35 GVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELG 94
Query: 125 TRYNGDADHHQRRKKFSFPARL----------------------ICGDCYEVHLDKVLAD 162
+ + L
Sbjct: 95 RWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPA 154
Query: 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207
P D F + A +RAL +++ LLRPGG +
Sbjct: 155 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.7 bits (118), Expect = 2e-07
Identities = 26/193 (13%), Positives = 67/193 (34%), Gaps = 13/193 (6%)
Query: 13 EGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA-SPIIHLKKLNN 71
+ + F+ D V+ R + ++ L+ +A S ++ + L N
Sbjct: 149 RQRIIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANK-----LKHYKAFSNYVYGELLPN 203
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNGD 130
++ V Q ++GD +DL G G +++ + G +I + + + +Y
Sbjct: 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE-- 261
Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190
+ +K+ + + + V + I C + ++ + + +
Sbjct: 262 ----ELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVE 317
Query: 191 NVSALLRPGGTFI 203
+ + G I
Sbjct: 318 KILQTAKVGCKII 330
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 46.9 bits (110), Expect = 1e-06
Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 35/198 (17%)
Query: 65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDC 123
H + L + I + L + + VLD+ CG+G + D G+D+++ +I+
Sbjct: 65 HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 124
Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
RY + F D D +A
Sbjct: 125 AKRYPQVTFCVASSHRLPFS-------------------DTSMDAIIRIYAPC------- 158
Query: 184 RARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFK 243
++ +++PGG I P L E++GL E+ +
Sbjct: 159 ----KAEELARVVKPGGWVITATPGPR----HLMELKGLIYNEVHLHAPHAEQLEGFTLQ 210
Query: 244 SSRPFGIQYKFHLEDAVD 261
S + ++AV
Sbjct: 211 QSAELCYPMRLRGDEAVA 228
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 8e-06
Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 6/146 (4%)
Query: 65 HLKKLNNWIKSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIED 122
H ++ + +K L + G V CGK ++ + A G+ V G++I+E I++
Sbjct: 25 HQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWF--ADRGHSVVGVEISELGIQE 82
Query: 123 CRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW--S 180
T N + ++ + +
Sbjct: 83 FFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI 142
Query: 181 TEARARRALANVSALLRPGGTFIGTM 206
+ + +LL ++ +
Sbjct: 143 NPGDRKCYADTMFSLLGKKFQYLLCV 168
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.3 bits (103), Expect = 9e-06
Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 26/196 (13%)
Query: 42 KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
+A++Y + +E +A ++++ + + R VLDLACG G ++
Sbjct: 7 LLAEYYDTIYRRRIERVKAE--------IDFVEEIFKEDAKREVRRVLDLACGTGIPTLE 58
Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
+ + VG+D+ E + R + + +
Sbjct: 59 LAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN------------- 104
Query: 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEG 221
FD + F+ + E R+ + V+ L+PGG FI P + V
Sbjct: 105 ---EFDAVTMFFSTIM-YFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWN 160
Query: 222 LAIGNSVYWIRLDEEF 237
G I E
Sbjct: 161 EQKGEEKLVIMDWREV 176
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 2e-05
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 14/179 (7%)
Query: 30 FLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVL 89
L +V+ V D SP ++ + + + ++ ++ D+ +
Sbjct: 102 LLRHILQQVYNHSVTDPEKLN-----NYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFV 156
Query: 90 DLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC 148
DL G G +++ A + G++ A+ + T + K L
Sbjct: 157 DLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 216
Query: 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207
GD + +A+ + L A ++ GG + + P
Sbjct: 217 GDFLSEEWRERIAN---TSVIFVNNFAFGP-----EVDHQLKERFANMKEGGRIVSSKP 267
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 3e-05
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 12/128 (9%)
Query: 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135
L + +G VL++ G K +A I + I+ +G + R A
Sbjct: 45 ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDW----APRQT 100
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
+ I + + + + L
Sbjct: 101 HKVIPLKGLWEDVAPTLPDGHFD--------GILYDTYPLSEETWHTHQFNFIKNHAFRL 152
Query: 196 LRPGGTFI 203
L+PGG
Sbjct: 153 LKPGGVLT 160
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 6e-05
Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)
Query: 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYN--GDA 131
+L + GD VL+ G GG + KA G + ++ + + + Y D+
Sbjct: 90 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
+++ I D D FD L
Sbjct: 150 WKLSHVEEWPDNVDFIHKDISGATED---IKSLTFDAV---------ALDMLNPHVTLPV 197
Query: 192 VSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI 231
L+ GG + + +I+ L + + S I
Sbjct: 198 FYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKI 237
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 3/109 (2%)
Query: 98 DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157
D +KA+ G Y ++ S + + + H+ + L+
Sbjct: 65 DTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE 124
Query: 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-FIGT 205
K PFD C+ M Y + L LL+P G F G
Sbjct: 125 KQYNVPGPFDAIFCRNVMIY--FDKTTQEDILRRFVPLLKPDGLLFAGH 171
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 14/116 (12%)
Query: 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135
++ + DV +D+ CG GG + ++ ID +I +
Sbjct: 25 IMCLAEPGKNDVAVDVGCGTGG-VTLELAGRVRRVYAIDRNPEAISTTE--------MNL 75
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
+R L+ GD E L DI + + L
Sbjct: 76 QRHGLGDNVTLMEGDAPE-----ALCKIPDIDIAVVGGSGGELQEILRIIKDKLKP 126
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 30/208 (14%), Positives = 65/208 (31%), Gaps = 17/208 (8%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR 136
D LDLACG G+L + K +D+++ + + ++ +
Sbjct: 30 KCVENNLVFDDYLDLACG-TGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRL 88
Query: 137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL 196
C D ++ + FD+ +C ++ VS L
Sbjct: 89 ----------ACQDISNLN------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHL 132
Query: 197 RPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHL 256
+ GG FI + + + L + + V++ ++ D F +F+
Sbjct: 133 KEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYK 192
Query: 257 EDAVDCPEWIVPFHIFKSLAEEYDLELV 284
+ E + + L ++
Sbjct: 193 RFDEEHEERAYKEEDIEKYLKHGQLNIL 220
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 20/128 (15%)
Query: 77 LVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135
L+Q+ A + + VLD+A G GG + + V D+ E ++ R G+
Sbjct: 7 LMQIAALKGNEEVLDVATG-GGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQV 65
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
+ + + + ++ +
Sbjct: 66 EYVQGDAEQMPFTDERF------------------HIVTCRIAAHHFPNPASFVSEAYRV 107
Query: 196 LRPGGTFI 203
L+ GG +
Sbjct: 108 LKKGGQLL 115
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.0 bits (87), Expect = 8e-04
Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 22/169 (13%)
Query: 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129
++ + ++ R VLD+ G G + + + +G+D +
Sbjct: 2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSP-YVQECIGVDATK------------ 48
Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL 189
+ + F+ + + + + D FDI +C++A H+ +
Sbjct: 49 --EMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKA----V 102
Query: 190 ANVSALLRPGGTFI---GTMPDANVIIKKLREVEGLAIGNSVYWIRLDE 235
V+ +L+ G F+ P+ V+ + + + L + V L E
Sbjct: 103 REVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSE 151
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 37.3 bits (85), Expect = 0.001
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 18/116 (15%)
Query: 88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
LDL CG G + + + + A +
Sbjct: 34 TLDLGCGNGRNSLYL----------------AANGYDVTAWDKNPASMANLERIKAAEGL 77
Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
++ L D +D M + +AN+ +PGG +
Sbjct: 78 DNLQTDLVDLNTLTFDGEYDFILSTVVMM--FLEAQTIPGLIANMQRCTKPGGYNL 131
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.002
Identities = 29/120 (24%), Positives = 39/120 (32%), Gaps = 15/120 (12%)
Query: 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
+ VVLD+ CG G + KA +G+D +E + A R K
Sbjct: 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ---------AMDIIRLNKLEDT 85
Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
LI G EVHL M Y E+ L + L GG+
Sbjct: 86 ITLIKGKIEEVHLPV------EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.0 bits (84), Expect = 0.002
Identities = 41/252 (16%), Positives = 76/252 (30%), Gaps = 37/252 (14%)
Query: 45 DHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK 104
Y R + ++ L + Y ++ VLDLACG GG
Sbjct: 3 KEYYRVFPTYTDINSQEYRSRIETLEPLLMK-----YMKKRGKVLDLACGVGGFSFLL-- 55
Query: 105 AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164
++ R+ + +R + K+ +D
Sbjct: 56 --------------EDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDK 101
Query: 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAI 224
FD ++ + E + V +L+P G FI D ++ +L+E
Sbjct: 102 TFDYVIFIDSIVHFEPLELN--QVFKEVRRVLKPSGKFIMYFTDLRELLPRLKE------ 153
Query: 225 GNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELV 284
+ + + K + +F E + V F+++ E +L
Sbjct: 154 ----SLVVGQKYWISKVIPDQEERTVVIEFKSEQD----SFRVRFNVWGKTGVELLAKLY 205
Query: 285 FVKNSHEFVHEY 296
F K + E V Y
Sbjct: 206 FTKEAEEKVGNY 217
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.5 bits (86), Expect = 0.002
Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
+ S+ + + VVLD+ G G + KA +GI+ + S
Sbjct: 21 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAV-------- 72
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
+ K +I G E + M Y E+ L
Sbjct: 73 -KIVKANKLDHVVTIIKGKVEE------VELPVEKVDIIISEWMGYCLFYESMLNTVLHA 125
Query: 192 VSALLRPGGTFI 203
L P G
Sbjct: 126 RDKWLAPDGLIF 137
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.2 bits (85), Expect = 0.002
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 22/127 (17%)
Query: 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141
+ ++D CG G + + Y GID E + + R + + + +
Sbjct: 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA 86
Query: 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201
L + C + + + E L + ++ GG
Sbjct: 87 TEIELNDKYDIAI----------------CHAFLLHMTTPE----TMLQKMIHSVKKGGK 126
Query: 202 FIGTMPD 208
I P
Sbjct: 127 IICFEPH 133
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 36.9 bits (84), Expect = 0.002
Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 18/138 (13%)
Query: 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD 132
++ L + G +LDL G G L W + GID++ + R +
Sbjct: 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAE-ELG 80
Query: 133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192
+R A + D+ +C A + +
Sbjct: 81 VSERVHFIHNDAAGYVANE-------------KCDVAACVGATWIAGGFAGAEEL----L 123
Query: 193 SALLRPGGTFIGTMPDAN 210
+ L+PGG + P
Sbjct: 124 AQSLKPGGIMLIGEPYWR 141
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 36.6 bits (84), Expect = 0.003
Identities = 23/158 (14%), Positives = 38/158 (24%), Gaps = 23/158 (14%)
Query: 48 SRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-- 105
+ E R +P + KL I + L + G VL L G
Sbjct: 39 RVIKWEGEEYRIWNP--NRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG 96
Query: 106 KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165
G GI+ + + + + I GD + + L
Sbjct: 97 WEGKIFGIEFSPRVLRELVPIVEERRNIV-----------PILGDATKPEEYRALVPKVD 145
Query: 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
+ N L+ GG +
Sbjct: 146 VIFEDVAQPTQAKI--------LIDNAEVYLKRGGYGM 175
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 35.9 bits (82), Expect = 0.003
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 19/162 (11%)
Query: 67 KKLNNWIKSVLVQ-----LYARRGDVVLDLACGKGGD----LIKWDKAKIGYYVGIDIAE 117
+K + V+V+ L ++LD G+GG L +I +GID+
Sbjct: 1 RKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRI---IGIDVDS 57
Query: 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177
+ + +D K A + +D +L D + + Q
Sbjct: 58 EVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD---LGVSTYQLKGEN 114
Query: 178 SWSTEARARRALANVSALLRPGGTF--IGTMPDANVIIKKLR 217
+ L LL PGG I + I+K+
Sbjct: 115 RELEN--LKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETF 154
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 36.4 bits (83), Expect = 0.004
Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 14/174 (8%)
Query: 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128
L+ + ++ + + GD VLD+ GG I A +GID + +IE +
Sbjct: 130 LDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK---- 185
Query: 129 GDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC-QFAMHYSWSTEARARR 187
+ + + I G +E +K+ FDI A R
Sbjct: 186 ----ENAKLNGVEDRMKFIVGSAFEEM-EKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLR 240
Query: 188 A----LANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEF 237
A L++ GG + +V ++ +++ A + ++++ E +
Sbjct: 241 AYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPY 294
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 100.0 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.89 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.88 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.87 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.87 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.86 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.85 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.85 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.84 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.84 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.83 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.81 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.79 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.79 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.77 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.77 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.77 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.77 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.75 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.75 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.73 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.73 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.71 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.71 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.69 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.68 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.68 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.65 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.65 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.62 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.62 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.62 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.59 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.58 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.55 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.55 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.53 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.52 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.51 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.5 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.49 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.48 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.47 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.47 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.46 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.44 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.42 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.37 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.32 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.3 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.28 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.28 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.26 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.24 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.23 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.15 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.15 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.14 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.13 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.12 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.12 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.01 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.0 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.99 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.97 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.96 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.93 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.91 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.78 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.74 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.73 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.72 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.66 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.62 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.6 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.6 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.58 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.58 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.53 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.53 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.5 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.48 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.46 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.4 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.3 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.28 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.26 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.26 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.22 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.19 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.17 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.1 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.1 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.09 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.95 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.9 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.69 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.04 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.96 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.9 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.88 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.74 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.65 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.6 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.54 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.4 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.39 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.38 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.29 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.25 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.1 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.07 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.84 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.83 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.77 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.45 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.37 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.37 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.34 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.22 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.63 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.54 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.21 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.07 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 94.04 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.89 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.84 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.25 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 93.23 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.15 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.46 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 92.27 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.14 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 91.88 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.73 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.02 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.55 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.5 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 87.05 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.11 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 84.3 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.07 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 83.95 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.17 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 82.79 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 82.45 |
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=100.00 E-value=3.3e-41 Score=304.17 Aligned_cols=251 Identities=38% Similarity=0.604 Sum_probs=213.6
Q ss_pred CccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC
Q 017369 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF 140 (372)
Q Consensus 61 s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 140 (372)
|++..+|.++||+|++|+..+.+++.+|||+|||+|.++..|+..+.++|+|+|+|+.|++.|++++.. .+.
T Consensus 1 ~~~~~~r~~~N~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~--------~~~ 72 (252)
T d1ri5a_ 1 SKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARN--------MKR 72 (252)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHT--------SCC
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHh--------cCC
Confidence 456789999999999999999999999999999999999999988888999999999999999999874 233
Q ss_pred CcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhc
Q 017369 141 SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVE 220 (372)
Q Consensus 141 ~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~ 220 (372)
..++.++++|+...++. ..++||+|+|.+++||++.+.+++..+++++.++|||||+|++++|+.+.+...+.+.
T Consensus 73 ~~~v~f~~~D~~~~~~~----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~- 147 (252)
T d1ri5a_ 73 RFKVFFRAQDSYGRHMD----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQG- 147 (252)
T ss_dssp SSEEEEEESCTTTSCCC----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHT-
T ss_pred CcceEEEEcchhhhccc----ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhc-
Confidence 55799999999766542 4578999999999999999999999999999999999999999999999888877653
Q ss_pred CCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccc-cCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCC
Q 017369 221 GLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV-DCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKK 299 (372)
Q Consensus 221 ~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~-~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~ 299 (372)
.+++..|.+.++... ......+..|.+++.+.+ +++||+++++.+.++++++||++++..+|.+|+.+...
T Consensus 148 --~~~~~~~~~~~~~~~-----~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~f~~~~~~~~~- 219 (252)
T d1ri5a_ 148 --RMSNDFYKIELEKME-----DVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGR- 219 (252)
T ss_dssp --CCBCSSEEEECCCCS-----SCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHHHH-
T ss_pred --ccCCceEEEeccccc-----CCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEecHHHHHHHHhh-
Confidence 567778888776532 112235678999998876 58899999999999999999999999999999876642
Q ss_pred hhhHHHHHHhccCCCCCCCCCCCCHhHHHHHHhhcEEEEEec
Q 017369 300 PEYIELMRRLGALGDGNQDQSTLSADEWEVAYLYLAFVLRKR 341 (372)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~~~~~ls~~e~e~~~ly~~~vf~K~ 341 (372)
....+.++++. +.|+++|||++++|++|||+|+
T Consensus 220 -~~~~~~~~~~~--------~~l~~~e~e~~~ly~~fiF~K~ 252 (252)
T d1ri5a_ 220 -RNPELSKKMGL--------GCLTREESEVVGIYEVVVFRKL 252 (252)
T ss_dssp -TCHHHHHSSSC--------CCCCHHHHHHHTTEEEEEEEEC
T ss_pred -hCHHHHHhcCC--------CcCCHHHHHHHHhhhEEEEEEC
Confidence 34566666542 4589999999999999999995
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.89 E-value=2.8e-22 Score=178.65 Aligned_cols=145 Identities=19% Similarity=0.354 Sum_probs=109.9
Q ss_pred HHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHH--hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCC
Q 017369 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQL--YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA 116 (372)
Q Consensus 39 ~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~--~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s 116 (372)
.|+.+|+.||....... .+..|+..++... ...++.+|||+|||+|.++..+++.+. +|+|+|+|
T Consensus 2 ~y~~~A~~YD~l~~~~~------------~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S 68 (246)
T d1y8ca_ 2 CYNKFAHIYDKLIRADV------------DYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLS 68 (246)
T ss_dssp CHHHHHHHHHHHTTCSC------------CHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSC
T ss_pred CHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccc
Confidence 46788999985432211 1233443332222 234567999999999999999987655 89999999
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecc-cccccCCCHHHHHHHHHHHHHh
Q 017369 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSAL 195 (372)
Q Consensus 117 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~ 195 (372)
+.|++.|+++.... ..+++++++|+.++++ +++||+|+|.+ +++|+ .+.+++..+|++++++
T Consensus 69 ~~ml~~A~~~~~~~----------~~~v~~~~~d~~~~~~------~~~fD~i~~~~~~~~~~-~~~~~~~~~l~~~~~~ 131 (246)
T d1y8ca_ 69 QEMLSEAENKFRSQ----------GLKPRLACQDISNLNI------NRKFDLITCCLDSTNYI-IDSDDLKKYFKAVSNH 131 (246)
T ss_dssp HHHHHHHHHHHHHT----------TCCCEEECCCGGGCCC------SCCEEEEEECTTGGGGC-CSHHHHHHHHHHHHTT
T ss_pred hhhhhhcccccccc----------Cccceeeccchhhhcc------cccccccceeeeeeecc-CCHHHHHHHHHHHHHh
Confidence 99999999987632 3468999999988764 46899999875 56654 5678999999999999
Q ss_pred cCCCcEEEEEeCChHHHH
Q 017369 196 LRPGGTFIGTMPDANVII 213 (372)
Q Consensus 196 LkpgG~li~~~~~~~~~~ 213 (372)
|||||.|++.+++...+.
T Consensus 132 LkpgG~~i~~~~~~~~~~ 149 (246)
T d1y8ca_ 132 LKEGGVFIFDINSYYKLS 149 (246)
T ss_dssp EEEEEEEEEEEECHHHHH
T ss_pred CCCCeEEEEEeCCHHHHh
Confidence 999999999988776543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.88 E-value=3.2e-23 Score=182.74 Aligned_cols=114 Identities=19% Similarity=0.299 Sum_probs=98.3
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
.+++....++++.+|||||||+|..+..++..+ .+|+|+|+|+.|++.|+++.... + ..++.+.++|+.+
T Consensus 5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~--------~-~~~i~~~~~d~~~ 74 (231)
T d1vl5a_ 5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGN--------G-HQQVEYVQGDAEQ 74 (231)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHT--------T-CCSEEEEECCC-C
T ss_pred HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhccccc--------c-ccccccccccccc
Confidence 446677788999999999999999998887665 58999999999999999987632 1 3479999999999
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++ ++++||+|+|..++||+ .++..+++++.++|||||++++..
T Consensus 75 l~~-----~~~~fD~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 75 MPF-----TDERFHIVTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp CCS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-----ccccccccccccccccc----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 887 78999999999999998 568899999999999999988754
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.87 E-value=6.1e-22 Score=176.65 Aligned_cols=146 Identities=24% Similarity=0.410 Sum_probs=113.0
Q ss_pred HHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCCh
Q 017369 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE 117 (372)
Q Consensus 38 ~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~ 117 (372)
++|+.+|+.|+......... ......++..++......+..+|||+|||+|..+..+++.+. +|+|+|+|+
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~ 73 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIER--------VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHE 73 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHHT--------HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCH
T ss_pred chhHhhHHHHHHHHHhhhhh--------HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecc
Confidence 46777888887543322211 122234566666666777788999999999999999987655 899999999
Q ss_pred HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecc-cccccCCCHHHHHHHHHHHHHhc
Q 017369 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALL 196 (372)
Q Consensus 118 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~L 196 (372)
.|++.|+++.... ..++.++++|+.++++ +++||+|+|.+ +++|+ +.++..++|++++++|
T Consensus 74 ~mi~~a~~~~~~~----------~~~i~~~~~d~~~l~~------~~~fD~I~~~~~~~~~~--~~~~~~~~L~~~~~~L 135 (251)
T d1wzna1 74 EMLRVARRKAKER----------NLKIEFLQGDVLEIAF------KNEFDAVTMFFSTIMYF--DEEDLRKLFSKVAEAL 135 (251)
T ss_dssp HHHHHHHHHHHHT----------TCCCEEEESCGGGCCC------CSCEEEEEECSSGGGGS--CHHHHHHHHHHHHHHE
T ss_pred ccccccccccccc----------cccchheehhhhhccc------ccccchHhhhhhhhhcC--ChHHHHHHHHHHHHHc
Confidence 9999999997632 3369999999999886 36899999975 55654 5678899999999999
Q ss_pred CCCcEEEEEeCChH
Q 017369 197 RPGGTFIGTMPDAN 210 (372)
Q Consensus 197 kpgG~li~~~~~~~ 210 (372)
||||++++++++..
T Consensus 136 kpgG~lii~~~~~~ 149 (251)
T d1wzna1 136 KPGGVFITDFPCWF 149 (251)
T ss_dssp EEEEEEEEEEEC--
T ss_pred CCCcEEEEEeccch
Confidence 99999999988753
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.87 E-value=2e-21 Score=176.67 Aligned_cols=162 Identities=19% Similarity=0.136 Sum_probs=122.6
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++... .++..+++++++|+.++++
T Consensus 62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~--------~gl~~~v~~~~~d~~~l~~-- 131 (282)
T d2o57a1 62 TGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQ--------AGLADNITVKYGSFLEIPC-- 131 (282)
T ss_dssp TTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH--------HTCTTTEEEEECCTTSCSS--
T ss_pred hcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccc--------ccccccccccccccccccc--
Confidence 345778999999999999999988876455899999999999999998763 4556789999999999988
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhh
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFA 238 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~ 238 (372)
++++||+|++..+++|+ +++..+|+++.++|||||+|+++.+...... .....
T Consensus 132 ---~~~sfD~V~~~~~l~h~----~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--------------------~~~~~ 184 (282)
T d2o57a1 132 ---EDNSYDFIWSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDPMKEDGI--------------------DKSSI 184 (282)
T ss_dssp ---CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEEECTTC--------------------CGGGG
T ss_pred ---cccccchhhccchhhhc----cCHHHHHHHHHHhcCCCcEEEEEEeecCCCC--------------------chhHH
Confidence 77999999999999998 4577899999999999999988754321000 00000
Q ss_pred hcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHH
Q 017369 239 DKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFV 293 (372)
Q Consensus 239 ~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~ 293 (372)
.. + .+....+ .+.+.+.+.++++++||+.+...+....+
T Consensus 185 ~~-------~--------~~~~~~~-~~~s~~~~~~~l~~~Gf~~i~~~d~~~~~ 223 (282)
T d2o57a1 185 QP-------I--------LDRIKLH-DMGSLGLYRSLAKECGLVTLRTFSRPDSL 223 (282)
T ss_dssp HH-------H--------HHHHTCS-SCCCHHHHHHHHHHTTEEEEEEEECHHHH
T ss_pred HH-------H--------HHHhccC-CCCCHHHHHHHHHHcCCceEEEEECcHhH
Confidence 00 0 0000001 25567888999999999999888765543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1e-21 Score=172.22 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=114.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++...+ ..+++|+++|+.++++
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~---------~~~~~f~~~d~~~~~~----- 123 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG---------KRVRNYFCCGLQDFTP----- 123 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG---------GGEEEEEECCGGGCCC-----
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccc---------cccccccccccccccc-----
Confidence 45678999999999999988876667789999999999999999986321 2367999999998876
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
++++||+|++..++||+ +.++..+++++++++|||||.+++..+... .+..
T Consensus 124 ~~~~fD~I~~~~~l~h~--~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~--------------~~~~------------- 174 (222)
T d2ex4a1 124 EPDSYDVIWIQWVIGHL--TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ--------------EGVI------------- 174 (222)
T ss_dssp CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEEBS--------------SSEE-------------
T ss_pred ccccccccccccccccc--hhhhhhhHHHHHHHhcCCcceEEEEEcccc--------------cccc-------------
Confidence 67899999999999997 556678999999999999999988753221 0000
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
+...+ ..+..+.+.++++++++||++++..
T Consensus 175 ------------~~~~~----~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 175 ------------LDDVD----SSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp ------------EETTT----TEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred ------------cccCC----ceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 00000 1135678899999999999998764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.3e-21 Score=169.71 Aligned_cols=173 Identities=16% Similarity=0.153 Sum_probs=123.4
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCC
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA 116 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s 116 (372)
-++|++++..|+.+...... .+. .....+. ...++.+|||||||+|.++..+. .++|+|+|
T Consensus 3 ~~~f~~~a~~Yd~w~~~~~~-----------~~~-~~~~~~~--~~~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s 63 (208)
T d1vlma_ 3 WHIFERFVNEYERWFLVHRF-----------AYL-SELQAVK--CLLPEGRGVEIGVGTGRFAVPLK-----IKIGVEPS 63 (208)
T ss_dssp THHHHHTHHHHHHHHHHTHH-----------HHH-HHHHHHH--HHCCSSCEEEETCTTSTTHHHHT-----CCEEEESC
T ss_pred HHHHHHHHHHHHHHHHHhHH-----------HHH-HHHHHHH--hhCCCCeEEEECCCCcccccccc-----eEEEEeCC
Confidence 45899999999853221110 010 1111122 23466799999999999887762 46899999
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhc
Q 017369 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL 196 (372)
Q Consensus 117 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L 196 (372)
+.|++.|+++ ++.++++|+.++++ ++++||+|+|..+++|+ +++..+|+++.++|
T Consensus 64 ~~~~~~a~~~----------------~~~~~~~d~~~l~~-----~~~~fD~I~~~~~l~h~----~d~~~~l~~~~~~L 118 (208)
T d1vlma_ 64 ERMAEIARKR----------------GVFVLKGTAENLPL-----KDESFDFALMVTTICFV----DDPERALKEAYRIL 118 (208)
T ss_dssp HHHHHHHHHT----------------TCEEEECBTTBCCS-----CTTCEEEEEEESCGGGS----SCHHHHHHHHHHHE
T ss_pred hhhccccccc----------------cccccccccccccc-----ccccccccccccccccc----cccccchhhhhhcC
Confidence 9999999864 37899999999887 67899999999999998 46789999999999
Q ss_pred CCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHH
Q 017369 197 RPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLA 276 (372)
Q Consensus 197 kpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~ 276 (372)
+|||.+++.+|+.............. ...++ .. .++++.+++.+++
T Consensus 119 ~pgG~l~i~~~~~~~~~~~~~~~~~~----------------~~~~~--------------~~----~~~~s~~~l~~~l 164 (208)
T d1vlma_ 119 KKGGYLIVGIVDRESFLGREYEKNKE----------------KSVFY--------------KN----ARFFSTEELMDLM 164 (208)
T ss_dssp EEEEEEEEEEECSSSHHHHHHHHTTT----------------C-CCS--------------TT----CCCCCHHHHHHHH
T ss_pred CCCceEEEEecCCcchhHHhhhhccc----------------ccccc--------------cc----ccCCCHHHHHHHH
Confidence 99999999998775444322211000 00000 00 1367788999999
Q ss_pred HHcCcEEEEec
Q 017369 277 EEYDLELVFVK 287 (372)
Q Consensus 277 ~~~Gf~~v~~~ 287 (372)
+++||+++...
T Consensus 165 ~~~Gf~~i~v~ 175 (208)
T d1vlma_ 165 RKAGFEEFKVV 175 (208)
T ss_dssp HHTTCEEEEEE
T ss_pred HHcCCeEEEEE
Confidence 99999988654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=2.4e-21 Score=171.89 Aligned_cols=145 Identities=18% Similarity=0.237 Sum_probs=112.4
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCC
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA 116 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s 116 (372)
.++|+++|..|+....... ......++..++.. ..+++.+|||+|||+|..+..++..+ .+|+|+|+|
T Consensus 6 ~~~yd~~a~~Yd~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s 73 (246)
T d2avna1 6 WEFYDRIARAYDSMYETPK----------WKLYHRLIGSFLEE-YLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPS 73 (246)
T ss_dssp HHHHHHHHHHHGGGGCSHH----------HHHHHHHHHHHHHH-HCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESC
T ss_pred HHHHHHHHHHHHHHhcccc----------chHHHHHHHHHHHH-hcCCCCEEEEECCCCchhcccccccc-eEEEEeecc
Confidence 4689999999985433211 12334455554433 45678899999999999999887654 489999999
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEec-ccccccCCCHHHHHHHHHHHHHh
Q 017369 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQ-FAMHYSWSTEARARRALANVSAL 195 (372)
Q Consensus 117 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~i~~~ 195 (372)
+.|++.|+++.. ..++++|+.++++ ++++||+|+|. .++||+ +++..+|+++.++
T Consensus 74 ~~~l~~a~~~~~---------------~~~~~~~~~~l~~-----~~~~fD~ii~~~~~~~~~----~d~~~~l~~i~r~ 129 (246)
T d2avna1 74 KEMLEVAREKGV---------------KNVVEAKAEDLPF-----PSGAFEAVLALGDVLSYV----ENKDKAFSEIRRV 129 (246)
T ss_dssp HHHHHHHHHHTC---------------SCEEECCTTSCCS-----CTTCEEEEEECSSHHHHC----SCHHHHHHHHHHH
T ss_pred cccccccccccc---------------ccccccccccccc-----ccccccceeeecchhhhh----hhHHHHHHHHHhh
Confidence 999999998764 2357899999887 67999999986 478887 4567899999999
Q ss_pred cCCCcEEEEEeCChHHHHHHHh
Q 017369 196 LRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 196 LkpgG~li~~~~~~~~~~~~l~ 217 (372)
|||||.+++++|+...++..+.
T Consensus 130 Lk~gG~~ii~~~~~~~~~~~~~ 151 (246)
T d2avna1 130 LVPDGLLIATVDNFYTFLQQMI 151 (246)
T ss_dssp EEEEEEEEEEEEBHHHHHHHHH
T ss_pred cCcCcEEEEEECCHHHHHHHHH
Confidence 9999999999998876655443
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=3.1e-21 Score=170.45 Aligned_cols=112 Identities=22% Similarity=0.365 Sum_probs=97.6
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++....++|+.+|||||||+|.++..+++.. .+|+|+|+|+.|++.|+++... .+ ..++.++++|+.+++
T Consensus 8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~--------~~-~~~~~~~~~d~~~~~ 77 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQE--------KG-VENVRFQQGTAESLP 77 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHH--------HT-CCSEEEEECBTTBCC
T ss_pred HHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhcc--------cc-ccccccccccccccc
Confidence 4556688999999999999999999988764 5899999999999999998763 11 246999999999988
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+ ++++||+|+|..+++|+ .++..+++++.++|||||+++++.
T Consensus 78 ~-----~~~~fD~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 78 F-----PDDSFDIITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp S-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-----cccccceeeeeceeecc----cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 8 78999999999999997 568899999999999999988754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.84 E-value=2.5e-20 Score=166.54 Aligned_cols=119 Identities=14% Similarity=0.139 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.+.+.++..+...+..+|||+|||+|.++..++......|+|+|+|+.|++.|+++... ..+++++++|
T Consensus 80 ~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~-----------~~~~~~~~~d 148 (254)
T d1xtpa_ 80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-----------MPVGKFILAS 148 (254)
T ss_dssp HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-----------SSEEEEEESC
T ss_pred HHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc-----------cccceeEEcc
Confidence 34555666666667889999999999999988766666899999999999999998763 2358899999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.++++ ++++||+|+|+.+++|+ +.++..++|++++++|+|||++++..+
T Consensus 149 ~~~~~~-----~~~~fD~I~~~~vl~hl--~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 149 METATL-----PPNTYDLIVIQWTAIYL--TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GGGCCC-----CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccc-----CCCccceEEeecccccc--chhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 998876 67899999999999998 556788999999999999999988653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.84 E-value=2e-20 Score=164.24 Aligned_cols=111 Identities=18% Similarity=0.352 Sum_probs=92.7
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc---CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
..+.+++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++... .+...++.+..+|+.+.+
T Consensus 34 ~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~--------~~~~~~~~~~~~d~~~~~ 105 (225)
T d1im8a_ 34 ERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA--------YHSEIPVEILCNDIRHVE 105 (225)
T ss_dssp HHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT--------SCCSSCEEEECSCTTTCC
T ss_pred HHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh--------hcccchhhhccchhhccc
Confidence 345688999999999999999888763 445899999999999999998764 233556888888887654
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
...+|+|+|..++||+ +.++..++|++++++|||||.|++..
T Consensus 106 -------~~~~d~i~~~~~l~~~--~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 106 -------IKNASMVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp -------CCSEEEEEEESCGGGS--CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------cccceeeEEeeecccc--ChhhHHHHHHHHHHhCCCCceeeccc
Confidence 3689999999999987 55788899999999999999998864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=3.1e-20 Score=162.41 Aligned_cols=115 Identities=26% Similarity=0.403 Sum_probs=99.3
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
+++++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++.... ...+.++++|+.++++
T Consensus 34 ~l~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~----------~~~~~~~~~d~~~l~~---- 98 (226)
T d1ve3a1 34 YMKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSR----------ESNVEFIVGDARKLSF---- 98 (226)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHT----------TCCCEEEECCTTSCCS----
T ss_pred hcCCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhccc----------cccccccccccccccc----
Confidence 56788999999999999999888754 48999999999999999987631 3357889999999887
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHH
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 213 (372)
++++||+|+|..+++|+ +..++.++|+++.++|||||.+++.+++...+.
T Consensus 99 -~~~~fD~I~~~~~l~~~--~~~d~~~~l~~i~~~LkpgG~lii~~~~~~~~~ 148 (226)
T d1ve3a1 99 -EDKTFDYVIFIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTDLRELL 148 (226)
T ss_dssp -CTTCEEEEEEESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHG
T ss_pred -cCcCceEEEEecchhhC--ChhHHHHHHHHHHHHcCcCcEEEEEEcCchhhh
Confidence 78999999999999997 556888999999999999999999988765443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.81 E-value=1.2e-19 Score=159.29 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=114.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|+++.. .++.++++|+.+.++ +
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~-------------~~~~~~~~~~~~~~~------~ 79 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLK-------------DGITYIHSRFEDAQL------P 79 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSC-------------SCEEEEESCGGGCCC------S
T ss_pred CCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhcccc-------------ccccccccccccccc------c
Confidence 56689999999999998887654 479999999999999998764 258999999887664 5
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHH-HhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhccc
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVS-ALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKF 242 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~-~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f 242 (372)
++||+|+|..+++|+ .++..+|.++. ++|+|||.+++++|+...+...+....+.....
T Consensus 80 ~~fD~I~~~~vleh~----~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~---------------- 139 (225)
T d2p7ia1 80 RRYDNIVLTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHN---------------- 139 (225)
T ss_dssp SCEEEEEEESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSST----------------
T ss_pred cccccccccceeEec----CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhh----------------
Confidence 789999999999998 56788999998 789999999999999766554433321110000
Q ss_pred CCCCCceeeEEEEeccccc-CceeeeehHHHHHHHHHcCcEEEEec
Q 017369 243 KSSRPFGIQYKFHLEDAVD-CPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 243 ~~~~~~g~~y~~~l~~~~~-~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
..+. ..... .....++.+.++++++++||+++...
T Consensus 140 ---~~~~-------~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 140 ---SAVT-------EAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp ---TCCC-------HHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred ---hhcC-------ccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 0000 00000 00135688899999999999998754
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1e-19 Score=161.66 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=100.3
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..+...+.+.|+.+|||||||+|..+..+++....+|+|||+|+.|++.|+++... .++..+++|+++|+.
T Consensus 22 ~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~--------~gl~~~v~~~~~d~~ 93 (245)
T d1nkva_ 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEE--------LGVSERVHFIHNDAA 93 (245)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEESCCT
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHH--------hhccccchhhhhHHh
Confidence 344556667889999999999999999988776556899999999999999998764 445668999999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
++. ++++||+|+|..+++|+ .++..+++++.++|||||++++..+
T Consensus 94 ~~~------~~~~fD~v~~~~~~~~~----~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 94 GYV------ANEKCDVAACVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TCC------CSSCEEEEEEESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hcc------ccCceeEEEEEehhhcc----CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 763 56899999999999998 4678999999999999999998764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=6.1e-19 Score=159.33 Aligned_cols=180 Identities=9% Similarity=0.078 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.+..++..+.++++.+|||||||+|+.+..+++....+|+|+|+|+++++.|+++..+ .++...+.+...|
T Consensus 39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~--------~~l~~~~~~~~~d 110 (280)
T d2fk8a1 39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLAS--------IDTNRSRQVLLQG 110 (280)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT--------SCCSSCEEEEESC
T ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHh--------hccccchhhhhhh
Confidence 34555666778899999999999999999888776556999999999999999999875 4456678888887
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe---CChHHHHHHHhhhcCCccCCe
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLREVEGLAIGNS 227 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~---~~~~~~~~~l~~~~~~~~~~~ 227 (372)
..++ +++||.|++..+++|+ ...+...+|++++++|||||.+++.+ .+.......-... .....
T Consensus 111 ~~~~--------~~~fD~i~si~~~eh~--~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~-~~~~~-- 177 (280)
T d2fk8a1 111 WEDF--------AEPVDRIVSIEAFEHF--GHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKL-SFETA-- 177 (280)
T ss_dssp GGGC--------CCCCSEEEEESCGGGT--CGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHH-HHHHH--
T ss_pred hhhh--------ccchhhhhHhhHHHHh--hhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhccccc-ccccc--
Confidence 6542 4789999999999998 44567899999999999999998754 2221111000000 00000
Q ss_pred EEEEEeCchhhh-cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHH
Q 017369 228 VYWIRLDEEFAD-KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHE 295 (372)
Q Consensus 228 ~~~i~f~~~~~~-~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~ 295 (372)
-..+... ..||. -++++.+++.++++++||+++...++...|..
T Consensus 178 -----~~~dfI~kyifPg-------------------g~lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~ 222 (280)
T d2fk8a1 178 -----RFIKFIVTEIFPG-------------------GRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIK 222 (280)
T ss_dssp -----HHHHHHHHHTSTT-------------------CCCCCHHHHHHHHHHTTCBCCCCEECHHHHHH
T ss_pred -----cccchhhhhccCC-------------------CcccchHhhhhhHHhhccccceeeecccCHHH
Confidence 0000000 01221 14778899999999999999999887765433
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.77 E-value=7.2e-19 Score=150.32 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccccc---ccCCCcCeE
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR---RKKFSFPAR 145 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~---~~~~~~~~~ 145 (372)
.+.+++..+..+.++|+.+|||+|||+|.++..+++.+. .|+|+|+|+.|++.|+++.+........ ...-...+.
T Consensus 5 ~~~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T d1pjza_ 5 VNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 83 (201)
T ss_dssp STHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence 345667777888889999999999999999999988765 8999999999999999998642110000 000123467
Q ss_pred EEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 146 ~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++|+.+++.. ....||+|++..+++|+ ...+...++++++++|||||.+++..
T Consensus 84 ~~~~d~~~l~~~----~~~~~D~i~~~~~l~~l--~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 84 IWCGDFFALTAR----DIGHCAAFYDRAAMIAL--PADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EEEECCSSSTHH----HHHSEEEEEEESCGGGS--CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred eecccccccccc----cccceeEEEEEeeeEec--chhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 888888876542 34689999999999988 66778899999999999999987654
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=5.2e-19 Score=157.92 Aligned_cols=177 Identities=13% Similarity=0.095 Sum_probs=115.5
Q ss_pred hhhHHHHHHHHHHh---CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccccc--------
Q 017369 68 KLNNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR-------- 136 (372)
Q Consensus 68 ~~~~~~k~~l~~~~---~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-------- 136 (372)
...+|+...+.+.. ..++.+|||+|||+|.++..++..+...|+|+|+|+.|++.|++++.........
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~ 111 (257)
T d2a14a1 32 EMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFAC 111 (257)
T ss_dssp HHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHH
Confidence 44556655555543 3467899999999999887776666657999999999999999987642210000
Q ss_pred -ccC-----------CCcCe-EEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 137 -RKK-----------FSFPA-RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 137 -~~~-----------~~~~~-~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
..+ ....+ .....+.......... +.++||+|++.+++||+....++...+++++.++|||||+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li 190 (257)
T d2a14a1 112 ELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPA-VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV 190 (257)
T ss_dssp HHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTC-CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HhccccchHHHHHHHHhhhhhcccccccccccccccc-cCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEE
Confidence 000 00001 1112222111111111 568999999999999998788899999999999999999999
Q ss_pred EEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEE
Q 017369 204 GTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLEL 283 (372)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~ 283 (372)
+..+... ..|... ... .+.+.++.++++++++++||++
T Consensus 191 ~~~~~~~----------------~~~~~~----------------~~~----------~~~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 191 TTVTLRL----------------PSYMVG----------------KRE----------FSCVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp EEEESSC----------------CEEEET----------------TEE----------EECCCCCHHHHHHHHHHTTEEE
T ss_pred EEEeccc----------------ccceec----------------ccc----------ccccCCCHHHHHHHHHHCCCEE
Confidence 8764321 111110 000 0113567899999999999998
Q ss_pred EEec
Q 017369 284 VFVK 287 (372)
Q Consensus 284 v~~~ 287 (372)
++..
T Consensus 229 ~~~~ 232 (257)
T d2a14a1 229 EQLL 232 (257)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=5.4e-18 Score=153.06 Aligned_cols=179 Identities=14% Similarity=0.141 Sum_probs=127.8
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..++..+.+.+|.+|||||||.|..+..+++....+|+|+++|+..++.|+++... .++..++.+..+|.
T Consensus 50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~--------~g~~~~v~~~~~d~ 121 (285)
T d1kpga_ 50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVAN--------SENLRSKRVLLAGW 121 (285)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT--------CCCCSCEEEEESCG
T ss_pred HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHh--------hhhhhhhHHHHhhh
Confidence 3455666678899999999999999999988876667999999999999999999764 45567899999998
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC---ChHHHHHHHhhhcCCccCCeE
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREVEGLAIGNSV 228 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~---~~~~~~~~l~~~~~~~~~~~~ 228 (372)
.++ +++||.|++..+++|+ .......+++++.++|||||.+++.+. .+....++.... .....+
T Consensus 122 ~~~--------~~~fD~i~si~~~eh~--~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~-~~~~~~-- 188 (285)
T d1kpga_ 122 EQF--------DEPVDRIVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPM-SFTFAR-- 188 (285)
T ss_dssp GGC--------CCCCSEEEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSC-HHHHHH--
T ss_pred hcc--------cccccceeeehhhhhc--CchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCc-chhhhc--
Confidence 653 3689999999999997 335567899999999999999886442 222111000000 000000
Q ss_pred EEEEeCchhhh-cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHH
Q 017369 229 YWIRLDEEFAD-KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHE 295 (372)
Q Consensus 229 ~~i~f~~~~~~-~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~ 295 (372)
..++.. ..||. -++++.+.+..+++++||+++...++..-|.+
T Consensus 189 -----~~~fi~kyiFpg-------------------g~lPsl~~~~~~~e~agf~v~~~~~~~~hYar 232 (285)
T d1kpga_ 189 -----FLKFIVTEIFPG-------------------GRLPSIPMVQECASANGFTVTRVQSLQPHYAK 232 (285)
T ss_dssp -----HHHHHHHHTSTT-------------------CCCCCHHHHHHHHHTTTCEEEEEEECHHHHHH
T ss_pred -----hhhHHHHHhccC-------------------CCCCChhhHHHHHHHhchhhcccccchhhHHH
Confidence 000000 11221 03778889999999999999999988876543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=5.9e-18 Score=153.24 Aligned_cols=181 Identities=12% Similarity=0.034 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.++.++..+.+++|.+|||||||.|+.+..++.....+|+|+++|+++++.|+++... .++...+.+...|
T Consensus 48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~--------~~l~~~v~~~~~d 119 (291)
T d1kpia_ 48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE--------VDSPRRKEVRIQG 119 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH--------SCCSSCEEEEECC
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHh--------hccchhhhhhhhc
Confidence 34566667778899999999999999999988876566999999999999999998874 4556678888887
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCC-----HHHHHHHHHHHHHhcCCCcEEEEEe---CChHHHHHHHhhhcCC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWST-----EARARRALANVSALLRPGGTFIGTM---PDANVIIKKLREVEGL 222 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-----~~~~~~~l~~i~~~LkpgG~li~~~---~~~~~~~~~l~~~~~~ 222 (372)
.. . .+++||.|++..+++|+.+. .+....+++++.++|||||++++.+ ++.....+. ... .
T Consensus 120 ~~---~-----~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~-~~~-~- 188 (291)
T d1kpia_ 120 WE---E-----FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQEL-GLT-S- 188 (291)
T ss_dssp GG---G-----CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHH-TCC-C-
T ss_pred cc---c-----cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhc-cCC-C-
Confidence 64 2 46899999999999997332 2467899999999999999998754 333211110 000 0
Q ss_pred ccCCeEEEEEeCchhhh-cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHH
Q 017369 223 AIGNSVYWIRLDEEFAD-KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVH 294 (372)
Q Consensus 223 ~~~~~~~~i~f~~~~~~-~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~ 294 (372)
... .. -..++.. ..||. -++++...+..+++++||+++...++...|.
T Consensus 189 p~~-~~----~~~~fi~kyiFpg-------------------g~lps~~~~~~~~e~~gl~v~~~~~~~~hYa 237 (291)
T d1kpia_ 189 PMS-LL----RFIKFILTEIFPG-------------------GRLPRISQVDYYSSNAGWKVERYHRIGANYV 237 (291)
T ss_dssp CHH-HH----HHHHHHHHHTCTT-------------------CCCCCHHHHHHHHHHHTCEEEEEEECGGGHH
T ss_pred chh-hc----ccchHHHHHhcCC-------------------CCCCCHHHHHhhhcccccccceeeeccccHH
Confidence 000 00 0000000 01221 1477889999999999999999888776554
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=2.9e-18 Score=156.26 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEE
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC 148 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (372)
+..|+..++.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.||+.|+++....+.. .......+..
T Consensus 44 ~~~~l~~~l~~---~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~-----~~~~~~~~~~ 114 (292)
T d1xvaa_ 44 YKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKE-----PAFDKWVIEE 114 (292)
T ss_dssp HHHHHHHHHHH---TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTS-----HHHHTCEEEE
T ss_pred HHHHHHHHhhh---cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccc-----cccceeeeee
Confidence 44565555433 4677999999999999999988754 8999999999999999887532110 0011234445
Q ss_pred CcCcccccccccCCCCCeeEEEecc-cccccCC---CHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 149 GDCYEVHLDKVLADDAPFDICSCQF-AMHYSWS---TEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 149 ~D~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~---~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
+|+...+. .....+.||+|+|.+ +++|+.. +.++...+|++++++|||||+|++++.+.+.++..
T Consensus 115 ~~~~~~~~--~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~ 183 (292)
T d1xvaa_ 115 ANWLTLDK--DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILST 183 (292)
T ss_dssp CCGGGHHH--HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred cccccccc--ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHHHhhc
Confidence 55543221 111457899999865 7888743 23678899999999999999999999998777654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.4e-17 Score=149.28 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHh---CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccccc---------
Q 017369 69 LNNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR--------- 136 (372)
Q Consensus 69 ~~~~~k~~l~~~~---~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~--------- 136 (372)
+.+|....+.... ...+.+|||+|||+|.+....+.....+|+|+|+|+.|++.|++++........-
T Consensus 36 ~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~ 115 (263)
T d2g72a1 36 VGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACL 115 (263)
T ss_dssp HHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhh
Confidence 3455444444332 3357899999999998766555555668999999999999999887532110000
Q ss_pred cc-----------CC-CcCeEEEECcCccccc-ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 137 RK-----------KF-SFPARLICGDCYEVHL-DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 137 ~~-----------~~-~~~~~~~~~D~~~~~~-~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
.. .. .........|+..... .......+.||+|++.+++||+..+.++...++++++++|||||+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li 195 (263)
T d2g72a1 116 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195 (263)
T ss_dssp HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 00 00 0012334456543221 11111356899999999999998888889999999999999999998
Q ss_pred EEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEE
Q 017369 204 GTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLEL 283 (372)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~ 283 (372)
+..+... ..|.. .....+.+.++.++++++++++||++
T Consensus 196 ~~~~~~~----------------~~~~~--------------------------~~~~~~~~~~t~e~v~~~l~~aGf~v 233 (263)
T d2g72a1 196 LIGALEE----------------SWYLA--------------------------GEARLTVVPVSEEEVREALVRSGYKV 233 (263)
T ss_dssp EEEEESC----------------CEEEE--------------------------TTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred EecccCC----------------ccccc--------------------------CCcccccCCCCHHHHHHHHHHCCCeE
Confidence 7653210 01110 00011113578899999999999999
Q ss_pred EEec
Q 017369 284 VFVK 287 (372)
Q Consensus 284 v~~~ 287 (372)
++..
T Consensus 234 ~~~~ 237 (263)
T d2g72a1 234 RDLR 237 (263)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.1e-17 Score=150.36 Aligned_cols=114 Identities=19% Similarity=0.338 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
+.+...+......++.+|||+|||+|.++..++... ...++|+|+|+.|++.|+++.. ++.+.++
T Consensus 71 ~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~--------------~~~~~~~ 136 (268)
T d1p91a_ 71 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP--------------QVTFCVA 136 (268)
T ss_dssp HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT--------------TSEEEEC
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc--------------cccceee
Confidence 334444455556778899999999999999998764 4579999999999999988764 5899999
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
|+.++++ ++++||+|++.++++++ +++.++|||||++++++|+.+.+.+
T Consensus 137 d~~~l~~-----~~~sfD~v~~~~~~~~~-----------~e~~rvLkpgG~l~~~~p~~~~l~e 185 (268)
T d1p91a_ 137 SSHRLPF-----SDTSMDAIIRIYAPCKA-----------EELARVVKPGGWVITATPGPRHLME 185 (268)
T ss_dssp CTTSCSB-----CTTCEEEEEEESCCCCH-----------HHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred ehhhccC-----CCCCEEEEeecCCHHHH-----------HHHHHHhCCCcEEEEEeeCCcchHH
Confidence 9999998 78999999999888763 6789999999999999998865443
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.73 E-value=2.1e-17 Score=141.80 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=89.6
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++... .++ .++.+.+.|+.+.++ +
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~--------~~~-~~~~~~~~d~~~~~~------~ 93 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAA--------EGL-DNLQTDLVDLNTLTF------D 93 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH--------TTC-TTEEEEECCTTTCCC------C
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhh--------ccc-cchhhhheecccccc------c
Confidence 445999999999999999987654 899999999999999988763 222 368899999987764 5
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
++||+|+|..++||+ +..+..++++++.++|+|||++++.+.
T Consensus 94 ~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 94 GEYDFILSTVVMMFL--EAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp CCEEEEEEESCGGGS--CTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccEEEEeeeeecC--CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 789999999999998 446788999999999999999887653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.71 E-value=1.2e-17 Score=148.81 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=92.4
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++......+..+|||||||+|.++..+++.. ...++++|+ +++++.|+++... .++..++.++.+|+.+.
T Consensus 72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~rv~~~~~D~~~~ 142 (253)
T d1tw3a2 72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKD--------EGLSDRVDVVEGDFFEP 142 (253)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHH--------TTCTTTEEEEECCTTSC
T ss_pred HHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHH--------hhcccchhhccccchhh
Confidence 4444455677899999999999999998764 457999998 6799999998764 45567899999998652
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
...+||+|++..++||+ +.++..++|++++++|||||++++..
T Consensus 143 -------~~~~~D~v~~~~vlh~~--~d~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 143 -------LPRKADAIILSFVLLNW--PDHDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp -------CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -------cccchhheeeccccccC--CchhhHHHHHHHHHhcCCCcEEEEEe
Confidence 23579999999999987 56777899999999999999988754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.71 E-value=2.8e-17 Score=148.79 Aligned_cols=109 Identities=20% Similarity=0.311 Sum_probs=92.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+.++.+|||+|||+|.++..++.. ...+|+|+|+|+.|++.|+++.... +.+++|.++|+.++++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~----------~~~~~f~~~d~~~~~~--- 91 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----------PYDSEFLEGDATEIEL--- 91 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS----------SSEEEEEESCTTTCCC---
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc----------cccccccccccccccc---
Confidence 456789999999999998888764 2357999999999999999988642 3468999999988775
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
+++||+|+|..++||+ +++..+|+++.++|||||.+++..|+..
T Consensus 92 ---~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~lii~~~~~~ 135 (281)
T d2gh1a1 92 ---NDKYDIAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPHWI 135 (281)
T ss_dssp ---SSCEEEEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECCHH
T ss_pred ---cCCceEEEEehhhhcC----CCHHHHHHHHHHHcCcCcEEEEEECCcc
Confidence 3579999999999998 5677999999999999999999988753
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.3e-16 Score=139.93 Aligned_cols=131 Identities=18% Similarity=0.149 Sum_probs=100.2
Q ss_pred hhHHHHHHHHH-HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc--------ccccC
Q 017369 69 LNNWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH--------QRRKK 139 (372)
Q Consensus 69 ~~~~~k~~l~~-~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--------~~~~~ 139 (372)
.+.++...+.. +...++.+|||+|||+|.++..++..+. +|+|||+|+.+|+.|+++........ .....
T Consensus 29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence 34444444433 3567889999999999999999988765 89999999999999999875321100 00011
Q ss_pred CCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 140 FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 140 ~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
...++.++++|+.+++.. ..+.||+|+...+++++ ..++...+++++.++|||||++++.+
T Consensus 108 ~~~~v~~~~~d~~~l~~~----~~~~fd~i~~~~~l~~~--~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPRT----NIGKFDMIWDRGALVAI--NPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp TTSSEEEEESCGGGGGGS----CCCCEEEEEESSSTTTS--CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCcEEEEEcchhhcccc----ccCceeEEEEEEEEEec--cchhhHHHHHHHHhhcCCcceEEEEE
Confidence 235789999999877542 56799999999999988 55678899999999999999987765
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=1.1e-16 Score=139.95 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=88.1
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.+.++|+.+|||+|||+|..+..+++. +.+.|+|+|+|+.|++.|+++... ..++..+.+|.......
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-----------~~ni~~i~~d~~~~~~~ 137 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----------RENIIPILGDANKPQEY 137 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----------CTTEEEEECCTTCGGGG
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-----------hcccceEEEeeccCccc
Confidence 446789999999999999999998875 456899999999999999998763 34678888888764432
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+..+|++++...+++. .+...++.++.+.|||||.+++..
T Consensus 138 ----~~~~~~v~~i~~~~~~~----~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 138 ----ANIVEKVDVIYEDVAQP----NQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp ----TTTCCCEEEEEECCCST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----ccccceeEEeeccccch----HHHHHHHHHHHHhcccCceEEEEe
Confidence 34567777766666665 678899999999999999988765
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.68 E-value=2e-16 Score=134.23 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=96.9
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.++..+.+.++.+|||+|||+|..+..++.. ..+|+|+|+++.|++.|+++++. .++..+++++++|+.+.
T Consensus 24 ~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~--------~gl~~~v~~~~gda~~~ 94 (186)
T d1l3ia_ 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQR--------HGLGDNVTLMEGDAPEA 94 (186)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH--------TTCCTTEEEEESCHHHH
T ss_pred HHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHH--------cCCCcceEEEECchhhc
Confidence 3555667889999999999999999988764 55899999999999999999874 45567899999999876
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
.. ....||+|++....++ ...+++.+.+.|||||++++..+..+.
T Consensus 95 ~~-----~~~~~D~v~~~~~~~~-------~~~~~~~~~~~LkpgG~lvi~~~~~e~ 139 (186)
T d1l3ia_ 95 LC-----KIPDIDIAVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLET 139 (186)
T ss_dssp HT-----TSCCEEEEEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred cc-----ccCCcCEEEEeCcccc-------chHHHHHHHHHhCcCCEEEEEeecccc
Confidence 65 5679999999887654 357899999999999999988766544
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3e-16 Score=141.74 Aligned_cols=137 Identities=9% Similarity=-0.005 Sum_probs=93.5
Q ss_pred hhhHHHHHHHHHHh-----CCCCCEEEEecCCccccHHHHHHc------C-CCEEEEEeCChHHHHHHHHHhcCCCcccc
Q 017369 68 KLNNWIKSVLVQLY-----ARRGDVVLDLACGKGGDLIKWDKA------K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135 (372)
Q Consensus 68 ~~~~~~k~~l~~~~-----~~~~~~VLDlGcG~G~~~~~l~~~------~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 135 (372)
.+.+|+...+.... .++..+|||||||+|.++..++.. + ...++|+|+|+.|++.|++++...
T Consensus 19 ~~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~----- 93 (280)
T d1jqea_ 19 CMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI----- 93 (280)
T ss_dssp HHHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc-----
Confidence 44556665554431 234458999999999987766542 1 225899999999999999998642
Q ss_pred cccCCCcCe--EEEECcCcccccc-cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 136 RRKKFSFPA--RLICGDCYEVHLD-KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 136 ~~~~~~~~~--~~~~~D~~~~~~~-~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
....++ .+.+.++.+.... ....++++||+|+|.+++||+ .++..+|+++.++|+|||.+++++++....
T Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~ 166 (280)
T d1jqea_ 94 ---SNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSGSSG 166 (280)
T ss_dssp ---CSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECTTSH
T ss_pred ---cccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecC----CCHHHHHHHHHhhCCCCCEEEEEEecCcch
Confidence 111233 3444444321100 001156899999999999998 567899999999999999999988766544
Q ss_pred HHHH
Q 017369 213 IKKL 216 (372)
Q Consensus 213 ~~~l 216 (372)
...+
T Consensus 167 ~~~l 170 (280)
T d1jqea_ 167 WDKL 170 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.2e-16 Score=140.21 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=101.9
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHH---HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIK---SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYY 110 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k---~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v 110 (372)
|...+.|+..+..|+..... ... ..-..+..|-+ ..+......++.+|||||||+|..+..+++....+|
T Consensus 7 e~~~~~w~~~~~~yd~~~~~-l~~------~~~~~m~~w~~~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v 79 (229)
T d1zx0a1 7 ENCSPAWGAAPAAYDAADTH-LRI------LGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEH 79 (229)
T ss_dssp CBCHHHHTTSCEEECTTSCE-EEE------TTEEEEEGGGHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEE
T ss_pred ccchhhhhhhhhcCCcHHHH-HHH------hchHHHHHHHHHHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeE
Confidence 34456788777778643211 110 00111222322 223334456789999999999999988887666689
Q ss_pred EEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEe-----cccccccCCCHHHH
Q 017369 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC-----QFAMHYSWSTEARA 185 (372)
Q Consensus 111 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~-----~~~l~~~~~~~~~~ 185 (372)
+|||+|+.+++.|+++.... ..++.++.+|+...... + ++++||.|+. ...++|+ .+.
T Consensus 80 ~~id~s~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~--~-~~~~fD~i~fD~~~~~~~~~~~----~~~ 142 (229)
T d1zx0a1 80 WIIECNDGVFQRLRDWAPRQ----------THKVIPLKGLWEDVAPT--L-PDGHFDGILYDTYPLSEETWHT----HQF 142 (229)
T ss_dssp EEEECCHHHHHHHHHHGGGC----------SSEEEEEESCHHHHGGG--S-CTTCEEEEEECCCCCBGGGTTT----HHH
T ss_pred EEeCCCHHHHHHHHHHhhhc----------ccccccccccccccccc--c-ccccccceeecccccccccccc----cCH
Confidence 99999999999999998642 34577788876543211 1 5688999874 4556655 788
Q ss_pred HHHHHHHHHhcCCCcEEEEE
Q 017369 186 RRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 186 ~~~l~~i~~~LkpgG~li~~ 205 (372)
..++++++++|||||+|++.
T Consensus 143 ~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 143 NFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp HHHHHTHHHHEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEEE
Confidence 89999999999999998764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=1.3e-15 Score=134.93 Aligned_cols=101 Identities=26% Similarity=0.321 Sum_probs=81.9
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++... + ..++.++++|+.+. +
T Consensus 117 ~~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~--------n--~~~~~~~~~d~~~~-~---- 180 (254)
T d2nxca1 117 HLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKR--------N--GVRPRFLEGSLEAA-L---- 180 (254)
T ss_dssp HCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHH--------T--TCCCEEEESCHHHH-G----
T ss_pred hcCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHH--------c--CCceeEEecccccc-c----
Confidence 45789999999999999988877655 5899999999999999998864 2 22467889887653 2
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.++||+|+++...+ ....++..+.++|||||+++++
T Consensus 181 -~~~~fD~V~ani~~~-------~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 181 -PFGPFDLLVANLYAE-------LHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp -GGCCEEEEEEECCHH-------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred -cccccchhhhccccc-------cHHHHHHHHHHhcCCCcEEEEE
Confidence 457999999875543 4567889999999999999875
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.62 E-value=5.5e-15 Score=131.51 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=91.9
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++......+..+|||||||+|..+..+++..+ .+++++|+ +++++.|+++... .+...++.+..+|+.+
T Consensus 73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~--------~~~~~ri~~~~~d~~~- 142 (256)
T d1qzza2 73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD--------AGLADRVTVAEGDFFK- 142 (256)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH--------TTCTTTEEEEECCTTS-
T ss_pred HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhh--------cCCcceeeeeeeeccc-
Confidence 34444456778999999999999999988643 47999998 7899999988764 4456689999999875
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+. +..||+|++.+++|++ +.++..++|++++++|||||++++..
T Consensus 143 ~~------p~~~D~v~~~~vLh~~--~d~~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 143 PL------PVTADVVLLSFVLLNW--SDEDALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp CC------SCCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc------cccchhhhcccccccc--CcHHHHHHHHHHHhhcCCcceeEEEE
Confidence 32 3569999999999987 66778899999999999999988754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=2.1e-15 Score=128.68 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=91.6
Q ss_pred HHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCcccc
Q 017369 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVH 155 (372)
Q Consensus 77 l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~ 155 (372)
+..+...++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++.. .++. .++++..+|+.+ .
T Consensus 45 i~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~--------~~l~~~~i~~~~~d~~~-~ 114 (194)
T d1dusa_ 45 VENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKL--------NNLDNYDIRVVHSDLYE-N 114 (194)
T ss_dssp HHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHH--------TTCTTSCEEEEECSTTT-T
T ss_pred HHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHH--------hCCccceEEEEEcchhh-h
Confidence 33456678999999999999999888764 45899999999999999998764 2222 368999999876 3
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+ ++++||+|+|+..+|+. .+....+++++.+.|+|||.+++.+..
T Consensus 115 ~-----~~~~fD~Ii~~~p~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 115 V-----KDRKYNKIITNPPIRAG---KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp C-----TTSCEEEEEECCCSTTC---HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred h-----ccCCceEEEEcccEEec---chhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 3 56899999999887753 345678999999999999998776543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=3.1e-15 Score=132.68 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=100.1
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..++..+.+.|+.+|||+|||+|.++..+++. ..++|+++|+++++++.|++++.... .....++.+.++|
T Consensus 85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~------~~~~~nv~~~~~d 158 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY------GQPPDNWRLVVSD 158 (264)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH------TSCCTTEEEECSC
T ss_pred HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc------cCCCceEEEEecc
Confidence 445666778999999999999999999999874 45799999999999999999876310 1234589999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
+.+.++ +++.||.|++ ++ .++..++.++.++|||||.+++.+|+.+.+.+.
T Consensus 159 ~~~~~~-----~~~~fDaV~l-----dl----p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~ 209 (264)
T d1i9ga_ 159 LADSEL-----PDGSVDRAVL-----DM----LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRI 209 (264)
T ss_dssp GGGCCC-----CTTCEEEEEE-----ES----SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHH
T ss_pred cccccc-----cCCCcceEEE-----ec----CCHHHHHHHHHhccCCCCEEEEEeCccChHHHH
Confidence 988777 6789999975 23 335578999999999999999999998665443
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.58 E-value=2.9e-15 Score=129.06 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=84.0
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
+.++|+.+|||+|||+|..+..++.. +.++|+|+|+|+.|++.|+++.+. ..++.++.+|+...+...
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-----------~~ni~~i~~d~~~~~~~~ 120 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----------RNNIIPLLFDASKPWKYS 120 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----------CSSEEEECSCTTCGGGTT
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-----------cCCceEEEeeccCccccc
Confidence 56789999999999999988888764 456899999999999999998763 237999999998765521
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
. ....+|+|++ .+.|. .+...+++++.+.|||||++++.+
T Consensus 121 ~--~~~~vd~v~~--~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 121 G--IVEKVDLIYQ--DIAQK----NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp T--TCCCEEEEEE--CCCST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--ccceEEEEEe--cccCh----hhHHHHHHHHHHHhccCCeEEEEE
Confidence 1 1234555544 33332 567889999999999999998775
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=1.1e-14 Score=125.96 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=89.8
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..++..+.++++.+|||+|||+|..+..+++. ..+.|+++|+++.+++.|++++... ...++.++++|
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~---------~~~n~~~~~~d 134 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL---------GIENVIFVCGD 134 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---------TCCSEEEEESC
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh---------cccccccccCc
Confidence 455667778999999999999999998888763 4568999999999999999998742 13478889999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.+... ..++||+|++..+++++. .++.++|||||++++.+.
T Consensus 135 ~~~~~~-----~~~~fD~I~~~~~~~~~p----------~~l~~~LkpGG~lv~pv~ 176 (213)
T d1dl5a1 135 GYYGVP-----EFSPYDVIFVTVGVDEVP----------ETWFTQLKEGGRVIVPIN 176 (213)
T ss_dssp GGGCCG-----GGCCEEEEEECSBBSCCC----------HHHHHHEEEEEEEEEEBC
T ss_pred hHHccc-----cccchhhhhhhccHHHhH----------HHHHHhcCCCcEEEEEEC
Confidence 877554 467899999999998761 246778999999988653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.55 E-value=1.3e-14 Score=127.85 Aligned_cols=116 Identities=14% Similarity=0.149 Sum_probs=92.0
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
++..+.+.||.+|||+|||+|.++..+++. ..++|+++|+++++++.|++++... ....++.+..+|+.+
T Consensus 77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~--------~~~~nv~~~~~Di~~ 148 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF--------YDIGNVRTSRSDIAD 148 (250)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT--------SCCTTEEEECSCTTT
T ss_pred HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--------cCCCceEEEEeeeec
Confidence 555667899999999999999999888864 5569999999999999999998742 234589999999876
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
.. ++..||.|++.. .++..++.++.++|||||++++.+|+.+.+.+
T Consensus 149 ~~------~~~~fD~V~ld~---------p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~ 194 (250)
T d1yb2a1 149 FI------SDQMYDAVIADI---------PDPWNHVQKIASMMKPGSVATFYLPNFDQSEK 194 (250)
T ss_dssp CC------CSCCEEEEEECC---------SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHH
T ss_pred cc------ccceeeeeeecC---------CchHHHHHHHHHhcCCCceEEEEeCCcChHHH
Confidence 42 467899998642 22347899999999999999999998765443
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.53 E-value=2.8e-14 Score=122.11 Aligned_cols=116 Identities=13% Similarity=0.202 Sum_probs=90.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++..|||||||+|..+..++... ...++|+|+++.++..|.++... .++ .|+.++++|+..+. +.+
T Consensus 27 ~~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~--------~~l-~Nv~~~~~Da~~l~--~~~ 95 (204)
T d2fcaa1 27 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD--------SEA-QNVKLLNIDADTLT--DVF 95 (204)
T ss_dssp TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--------SCC-SSEEEECCCGGGHH--HHC
T ss_pred CCCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHH--------Hhc-cCchhcccchhhhh--ccc
Confidence 3456789999999999999998864 45799999999999999998764 222 47999999998654 122
Q ss_pred CCCCCeeEEEecccccccCCCHHH------HHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEAR------ARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~------~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
+++++|.|++.+...|. ...+ ...+|+.++++|||||.|++.+-+...
T Consensus 96 -~~~~~d~v~i~fp~P~~--k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y 149 (204)
T d2fcaa1 96 -EPGEVKRVYLNFSDPWP--KKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGL 149 (204)
T ss_dssp -CTTSCCEEEEESCCCCC--SGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHH
T ss_pred -Cchhhhccccccccccc--hhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHH
Confidence 67899999998877764 1111 147999999999999999998865543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=2.6e-14 Score=131.76 Aligned_cols=118 Identities=21% Similarity=0.255 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.|.+.+.......++.+|||||||+|.++..+++.+..+|+|+|.|+ +++.|++.... .+...++.++++|
T Consensus 25 ~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~--------~~~~~~i~~i~~~ 95 (328)
T d1g6q1_ 25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVEL--------NGFSDKITLLRGK 95 (328)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHH--------TTCTTTEEEEESC
T ss_pred HHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHH--------hCccccceEEEee
Confidence 34444444444457899999999999999888887777999999996 67778777653 4556789999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+.++++ ++++||+|++....+++. .+.....++..+.++|||||.++
T Consensus 96 ~~~l~~-----~~~~~D~i~se~~~~~~~-~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 96 LEDVHL-----PFPKVDIIISEWMGYFLL-YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTTSCC-----SSSCEEEEEECCCBTTBS-TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccC-----cccceeEEEEEecceeec-cchhHHHHHHHHHhccCCCeEEE
Confidence 999887 678999999987766553 23557788999999999999986
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.2e-14 Score=128.75 Aligned_cols=118 Identities=22% Similarity=0.208 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
.|.+.+.......++.+|||||||+|.++..+++.+..+|+|+|.|+.++..++.... .+...++.++++|
T Consensus 22 ~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~---------~~~~~~i~~~~~~ 92 (311)
T d2fyta1 22 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRL---------NKLEDTITLIKGK 92 (311)
T ss_dssp HHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHH---------TTCTTTEEEEESC
T ss_pred HHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHH---------hCCCccceEEEee
Confidence 4444454444556889999999999999998888887899999999988765444333 4456789999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+.++++ +..+||+|++....++++ .+..+..++....+.|||||.++
T Consensus 93 ~~~l~~-----~~~~~D~Ivse~~~~~~~-~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 93 IEEVHL-----PVEKVDVIISEWMGYFLL-FESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TTTSCC-----SCSCEEEEEECCCBTTBT-TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHhcC-----ccccceEEEEeeeeeecc-cccccHHHHHHHHhcCCCCcEEe
Confidence 999887 678999999987666553 33567788888899999999987
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=3.3e-14 Score=130.33 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=86.9
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||||||+|.++..+++.+..+|+|+|.|+.+ ..|++.... +++..++.++++|+.++++
T Consensus 30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~--------n~~~~~v~~~~~~~~~~~~---- 96 (316)
T d1oria_ 30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKA--------NKLDHVVTIIKGKVEEVEL---- 96 (316)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHH--------TTCTTTEEEEESCTTTCCC----
T ss_pred ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHH--------hCCccccceEeccHHHccc----
Confidence 344789999999999999888888777789999999865 555554432 4556789999999999887
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+.++||+|++....++++ .+..+..++..+.+.|||||.++
T Consensus 97 -~~~~~D~ivs~~~~~~l~-~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 97 -PVEKVDIIISEWMGYCLF-YESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp -SSSCEEEEEECCCBBTBT-BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -ccceeEEEeeeeeeeeec-cHHHHHHHHHHHHhcCCCCeEEE
Confidence 678999999987766653 33457889999999999999987
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.5e-14 Score=133.13 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
..+..++....+.++.+|||+|||+|..+..++.. +...++|+|+|+.+++.|++.......+......-..++.++++
T Consensus 138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 44667777778899999999999999999888764 55679999999999999987654211000000011347999999
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
|+.+.++.+.. ..+|+|+++... |. +++...|.++.+.|||||+++...
T Consensus 218 d~~~~~~~~~~---~~advi~~~~~~-f~----~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 218 DFLSEEWRERI---ANTSVIFVNNFA-FG----PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CTTSHHHHHHH---HHCSEEEECCTT-TC----HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccccc---CcceEEEEccee-cc----hHHHHHHHHHHHhCCCCcEEEEec
Confidence 99988763211 135777775443 33 678899999999999999998753
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=7.2e-14 Score=121.45 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=88.1
Q ss_pred HHHHHHH--hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 74 KSVLVQL--YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 74 k~~l~~~--~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
..++..+ .++++.+|||+|||+|..+..++.. ..+.|+|+|+++++++.|++++...+... ....++.+.++
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~----~~~~~~~~~~g 139 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL----LSSGRVQLVVG 139 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH----HHTSSEEEEES
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccc----ccccceEEEEe
Confidence 3455544 5689999999999999888777653 45689999999999999999876321100 01246889999
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
|+..... +..+||+|++..++++++ ..+.+.|||||++++.+..
T Consensus 140 D~~~~~~-----~~~~fD~I~~~~~~~~ip----------~~l~~~LkpGG~LV~pv~~ 183 (224)
T d1i1na_ 140 DGRMGYA-----EEAPYDAIHVGAAAPVVP----------QALIDQLKPGGRLILPVGP 183 (224)
T ss_dssp CGGGCCG-----GGCCEEEEEECSBBSSCC----------HHHHHTEEEEEEEEEEESC
T ss_pred ecccccc-----hhhhhhhhhhhcchhhcC----------HHHHhhcCCCcEEEEEEcc
Confidence 9887655 567999999999998762 3467899999999987643
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=8.3e-14 Score=123.99 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=94.5
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
..++..+.+.|+.+|||+|||+|..+..+++. ..++|+++|+++++++.|++++.. .++..++.+...|+
T Consensus 93 ~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~--------~g~~~~v~~~~~d~ 164 (266)
T d1o54a_ 93 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK--------WGLIERVTIKVRDI 164 (266)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH--------TTCGGGEEEECCCG
T ss_pred HHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--------hccccCcEEEeccc
Confidence 34566778899999999999999999988774 456899999999999999999874 34456788888887
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
... + ....||.|+. ++ .++..++.++.++|||||.+++.+|+.+.+.+
T Consensus 165 ~~~-~-----~~~~~D~V~~-----d~----p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~ 212 (266)
T d1o54a_ 165 SEG-F-----DEKDVDALFL-----DV----PDPWNYIDKCWEALKGGGRFATVCPTTNQVQE 212 (266)
T ss_dssp GGC-C-----SCCSEEEEEE-----CC----SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred ccc-c-----cccceeeeEe-----cC----CCHHHHHHHHHhhcCCCCEEEEEeCcccHHHH
Confidence 542 2 4577998864 33 34568999999999999999999998765443
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.47 E-value=2.6e-13 Score=115.95 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=90.0
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.....|||||||+|..+..++... ...++|+|+++.++..|.++... .+ ..|+.++++|+.++. +.+
T Consensus 30 ~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~--------~~-l~Ni~~~~~da~~l~--~~~- 97 (204)
T d1yzha1 30 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE--------VG-VPNIKLLWVDGSDLT--DYF- 97 (204)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------HC-CSSEEEEECCSSCGG--GTS-
T ss_pred CCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhh--------hc-cccceeeecCHHHHh--hhc-
Confidence 456789999999999999998864 55799999999999999888763 22 247999999998754 222
Q ss_pred CCCCeeEEEecccccccCCCHHH------HHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEAR------ARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~------~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
++.++|.|++.+.-.|. ...+ ...+|+.++++|||||.|.+.|-+.+..
T Consensus 98 ~~~~~~~i~i~fPdPw~--K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~ 152 (204)
T d1yzha1 98 EDGEIDRLYLNFSDPWP--KKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLF 152 (204)
T ss_dssp CTTCCSEEEEESCCCCC--SGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHH
T ss_pred cCCceehhccccccccc--chhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHH
Confidence 67899999988765542 1111 1579999999999999999988666543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=2.3e-13 Score=118.11 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=85.9
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
.+.++||.+|||+|||+|..+..+++. ..+.|+|+|+|+.|++.++++.+. ..++..+..|+.....
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-----------~~~~~~i~~d~~~~~~ 136 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----------RRNIVPILGDATKPEE 136 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----------CTTEEEEECCTTCGGG
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-----------cCCceEEEEECCCccc
Confidence 446789999999999999999999874 467999999999999999998864 3357788888865432
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
... ....+|+|++... +. .+...++.++.+.|||||++++.+
T Consensus 137 ~~~--~~~~vD~i~~d~~--~~----~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 137 YRA--LVPKVDVIFEDVA--QP----TQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GTT--TCCCEEEEEECCC--ST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc--cccceEEEEEEcc--cc----chHHHHHHHHHHhcccCCeEEEEE
Confidence 111 3467898876433 32 567789999999999999998765
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.44 E-value=3.2e-13 Score=116.87 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=86.0
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
..++..+.++++.+|||+|||+|..+..++.. .++|+++|+++.+++.|+++... ..++.++++|...
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~-----------~~nv~~~~~d~~~ 127 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSY-----------YNNIKLILGDGTL 127 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTT-----------CSSEEEEESCGGG
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhc-----------ccccccccCchhh
Confidence 34666778899999999999999988777654 56999999999999999988763 3479999999865
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
... ..++||.|++..++.++. ..+.+.|||||++++-+
T Consensus 128 g~~-----~~~pfD~Iiv~~a~~~ip----------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 128 GYE-----EEKPYDRVVVWATAPTLL----------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp CCG-----GGCCEEEEEESSBBSSCC----------HHHHHTEEEEEEEEEEE
T ss_pred cch-----hhhhHHHHHhhcchhhhh----------HHHHHhcCCCCEEEEEE
Confidence 432 457899999999888761 34567899999998765
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.5e-13 Score=122.23 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=95.2
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCccc--ccccCCCcCeEEEE
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHH--QRRKKFSFPARLIC 148 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~ 148 (372)
+..++..+.+.||.+|||+|||+|.++..+++. ..++|+++|+++++++.|+++++..+... ........++.+.+
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 444666778999999999999999999998874 56799999999999999999876321100 01123456899999
Q ss_pred CcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 149 ~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
+|+.+.... + +...||.|++. + .++..++.++.++|||||++++.+|+.+.+...
T Consensus 167 ~di~~~~~~--~-~~~~fD~V~LD-----~----p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~ 221 (324)
T d2b25a1 167 KDISGATED--I-KSLTFDAVALD-----M----LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIEL 221 (324)
T ss_dssp SCTTCCC----------EEEEEEC-----S----SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHH
T ss_pred cchhhcccc--c-CCCCcceEeec-----C----cCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHH
Confidence 998764321 1 45789999863 2 123368999999999999999999998765443
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=8.3e-13 Score=123.55 Aligned_cols=131 Identities=12% Similarity=0.132 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE
Q 017369 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (372)
Q Consensus 68 ~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (372)
.....+..++..+.+.++.+|||||||+|..+..++.. +.++++|||+|+.|++.|+++....+........-.....+
T Consensus 200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~ 279 (406)
T d1u2za_ 200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279 (406)
T ss_dssp BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence 34567888888889999999999999999999988765 55689999999999999998875321100000000112333
Q ss_pred -EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 147 -ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 147 -~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..++....+.... .-..+|+|+++..+ |. +++...|.++.+.|||||+++.+
T Consensus 280 ~~~~~f~~~~~~d~--~~~~adVV~inn~~-f~----~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 280 SLKKSFVDNNRVAE--LIPQCDVILVNNFL-FD----EDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp EESSCSTTCHHHHH--HGGGCSEEEECCTT-CC----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred eeeechhhcccccc--ccccceEEEEeccc-Cc----hHHHHHHHHHHHhcCCCcEEEEe
Confidence 3444433221100 11457888876433 33 68899999999999999998864
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.32 E-value=3.9e-12 Score=109.21 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+.++++.+|||||||+|..+..++....++|+++|.++.+++.|++++...+ ..++.++++|..
T Consensus 67 ~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g---------~~nv~~~~gd~~ 137 (215)
T d1jg1a_ 67 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG---------VKNVHVILGDGS 137 (215)
T ss_dssp HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEESCGG
T ss_pred HHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcC---------CceeEEEECccc
Confidence 45567777899999999999999998887765433579999999999999999987432 358999999997
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+... ..++||.|++..++..+ + ..+...|+|||++++-+.
T Consensus 138 ~g~~-----~~~pfD~Iiv~~a~~~i--p--------~~l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 138 KGFP-----PKAPYDVIIVTAGAPKI--P--------EPLIEQLKIGGKLIIPVG 177 (215)
T ss_dssp GCCG-----GGCCEEEEEECSBBSSC--C--------HHHHHTEEEEEEEEEEEC
T ss_pred cCCc-----ccCcceeEEeecccccC--C--------HHHHHhcCCCCEEEEEEc
Confidence 6443 56899999999998865 1 235678999999987653
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=2.5e-12 Score=117.79 Aligned_cols=120 Identities=19% Similarity=0.176 Sum_probs=90.3
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...+++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++.. +++..+++++++|+.+.... .
T Consensus 141 ~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~--------ngl~~~~~~~~~d~~~~~~~-~ 211 (324)
T d2as0a2 141 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL--------NGVEDRMKFIVGSAFEEMEK-L 211 (324)
T ss_dssp GGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHHHH-H
T ss_pred hhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHH--------cCCCccceeeechhhhhhHH-H
Confidence 34578999999999999999999888777999999999999999999874 55666899999998753210 0
Q ss_pred cCCCCCeeEEEeccccccc-----CCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 160 LADDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~-----~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.....+||+|++..-.... +....+...++..+.++|+|||+++.++..
T Consensus 212 ~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 212 QKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp HHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred HhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 0135789999985422110 001234567888999999999999887643
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.28 E-value=6e-12 Score=102.45 Aligned_cols=108 Identities=15% Similarity=0.050 Sum_probs=84.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+.+|||+|||+|.++.+.+.++..+|+++|.++.+++.+++++.. .+...+++++++|+...... ..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~--------~~~~~~~~ii~~D~~~~l~~----~~ 81 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIM--------TKAENRFTLLKMEAERAIDC----LT 81 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHT--------TTCGGGEEEECSCHHHHHHH----BC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhh--------cccccchhhhcccccccccc----cc
Confidence 6889999999999999998888888999999999999999999875 34456799999998763211 45
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHH--HhcCCCcEEEEEeCC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPD 208 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~li~~~~~ 208 (372)
++||+|++.--.. .......+..+. +.|+|||.+++..+.
T Consensus 82 ~~fDiIf~DPPy~-----~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 82 GRFDLVFLDPPYA-----KETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp SCEEEEEECCSSH-----HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred cccceeEechhhc-----cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 7899999864321 234456666664 469999999987643
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=9.6e-12 Score=110.53 Aligned_cols=131 Identities=10% Similarity=0.108 Sum_probs=94.1
Q ss_pred ccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC
Q 017369 62 PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF 140 (372)
Q Consensus 62 ~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 140 (372)
.++..|.-...+...........+.+|||+|||+|..+..++.. +...|+|+|+|+.+++.|++++.. .++
T Consensus 86 ~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~--------~~~ 157 (274)
T d2b3ta1 86 ATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH--------LAI 157 (274)
T ss_dssp TSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH--------HTC
T ss_pred cccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH--------hCc
Confidence 34445555554443333444456789999999999999988774 456899999999999999999864 233
Q ss_pred CcCeEEEECcCcccccccccCCCCCeeEEEecccc-------------ccc----CCC----HHHHHHHHHHHHHhcCCC
Q 017369 141 SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAM-------------HYS----WST----EARARRALANVSALLRPG 199 (372)
Q Consensus 141 ~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l-------------~~~----~~~----~~~~~~~l~~i~~~Lkpg 199 (372)
.+++++++|+.+. + ++.+||+|+|+--. .|- +.. ......++.++.+.|+||
T Consensus 158 -~~v~~~~~d~~~~-~-----~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~ 230 (274)
T d2b3ta1 158 -KNIHILQSDWFSA-L-----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG 230 (274)
T ss_dssp -CSEEEECCSTTGG-G-----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred -ccceeeecccccc-c-----CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCC
Confidence 3699999998763 3 45799999997321 110 000 134577889999999999
Q ss_pred cEEEEEeC
Q 017369 200 GTFIGTMP 207 (372)
Q Consensus 200 G~li~~~~ 207 (372)
|.+++.+.
T Consensus 231 G~l~lEig 238 (274)
T d2b3ta1 231 GFLLLEHG 238 (274)
T ss_dssp EEEEEECC
T ss_pred CEEEEEEC
Confidence 99998774
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.26 E-value=1.1e-11 Score=109.57 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=83.7
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.++..++..+.++|+++|+++.+++.+++++.. +++..+++++++|+.++.
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~--------n~l~~~v~~~~~D~~~~~----- 170 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL--------NKVEDRMSAYNMDNRDFP----- 170 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHH--------TTCTTTEEEECSCTTTCC-----
T ss_pred hcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHH--------hCCCceEEEEEcchHHhc-----
Confidence 3578999999999999999999887767999999999999999999874 566778999999998765
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
..+.||.|++...- ....++..+.+.|+|||++.+
T Consensus 171 -~~~~~D~Ii~~~p~--------~~~~~l~~a~~~l~~gG~lh~ 205 (260)
T d2frna1 171 -GENIADRILMGYVV--------RTHEFIPKALSIAKDGAIIHY 205 (260)
T ss_dssp -CCSCEEEEEECCCS--------SGGGGHHHHHHHEEEEEEEEE
T ss_pred -cCCCCCEEEECCCC--------chHHHHHHHHhhcCCCCEEEE
Confidence 35789999875321 123567788899999998754
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=2e-11 Score=102.89 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=95.1
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
++.++..+.+.++..|||++||+|+++..++.. +.++|+|+|.++.|++.|++++.. +..++.++++++
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~----------~~~r~~~~~~~f 81 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE----------FSDRVSLFKVSY 81 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG----------GTTTEEEEECCG
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc----------ccccccchhHHH
Confidence 455666677889999999999999999999875 456899999999999999999863 245799999988
Q ss_pred cccccccccCCCCCeeEEEecccccc--c---CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHY--S---WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~--~---~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.++.........++||.|+....+.. + -.........|..+.++|+|||.+++.+-..
T Consensus 82 ~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 82 READFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp GGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred hhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 76542111113578999988765411 0 0012456788999999999999987666443
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.23 E-value=2.7e-11 Score=104.62 Aligned_cols=114 Identities=19% Similarity=0.158 Sum_probs=83.9
Q ss_pred HHHHHH--hCCCCCEEEEecCCccccHHHHHHc-------CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeE
Q 017369 75 SVLVQL--YARRGDVVLDLACGKGGDLIKWDKA-------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR 145 (372)
Q Consensus 75 ~~l~~~--~~~~~~~VLDlGcG~G~~~~~l~~~-------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 145 (372)
.++..+ .++++.+|||+|||+|..+..++.. ...+|+++|+++++++.|+++....... ..-..++.
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~----~~~~~nv~ 144 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS----MLDSGQLL 144 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH----HHHHTSEE
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh----hcCccEEE
Confidence 344444 5789999999999999987766542 1247999999999999998876421000 00023789
Q ss_pred EEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 146 ~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.++|..+... +.++||.|++..++..+. ..+.+.|||||++++.+.
T Consensus 145 ~~~~d~~~~~~-----~~~~fD~Iiv~~a~~~~p----------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 145 IVEGDGRKGYP-----PNAPYNAIHVGAAAPDTP----------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp EEESCGGGCCG-----GGCSEEEEEECSCBSSCC----------HHHHHTEEEEEEEEEEES
T ss_pred EEecccccccc-----cccceeeEEEEeechhch----------HHHHHhcCCCcEEEEEEe
Confidence 99999876544 567999999999988651 246789999999988663
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.15 E-value=1.3e-10 Score=101.80 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=76.8
Q ss_pred CCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+|||||||+|..+..++++.+ .+++.+|+ ++.++. .....+++++.+|+.+ +.
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~---------------~~~~~ri~~~~gd~~~-~~----- 137 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN---------------APPLSGIEHVGGDMFA-SV----- 137 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT---------------CCCCTTEEEEECCTTT-CC-----
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc---------------cCCCCCeEEecCCccc-cc-----
Confidence 5568999999999999999987643 47999998 333321 1224579999999874 22
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
...|++++..++|+. +.++...+|+++++.|+|||.+++.
T Consensus 138 --p~~D~~~l~~vLh~~--~de~~~~iL~~~~~aL~pgg~llI~ 177 (244)
T d1fp1d2 138 --PQGDAMILKAVCHNW--SDEKCIEFLSNCHKALSPNGKVIIV 177 (244)
T ss_dssp --CCEEEEEEESSGGGS--CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --ccceEEEEehhhhhC--CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 356999999999986 6788999999999999999998764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.15 E-value=2.2e-11 Score=111.11 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=84.2
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++. +..+|+++|+|+.+++.|++++.. +++ .++.++++|+.+..-. ....
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~--------ngl-~~~~~i~~d~~~~~~~-~~~~ 212 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARL--------NGL-GNVRVLEANAFDLLRR-LEKE 212 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHH--------TTC-TTEEEEESCHHHHHHH-HHHT
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHH--------cCC-CCcceeeccHHHHhhh-hHhh
Confidence 3688999999999999988764 456899999999999999999874 333 3689999998763210 0014
Q ss_pred CCCeeEEEeccccc-----ccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMH-----YSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++||+|++.--.. ..+........++..+.++|+|||.++.++-
T Consensus 213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 57899999864211 1111124556788999999999999988764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.14 E-value=2.5e-10 Score=96.36 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=76.9
Q ss_pred CCCCEEEEecCCccccHHH----HHHc-----CCCEEEEEeCChHHHHHHHHHhcCCCccc----------ccc------
Q 017369 83 RRGDVVLDLACGKGGDLIK----WDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHH----------QRR------ 137 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~----l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----------~~~------ 137 (372)
.+..+||++|||+|.-... +.+. ..-+++|+|+|+.+++.|++..-...... -.+
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4556999999999984322 2221 11269999999999999985321100000 000
Q ss_pred ------cCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 138 ------KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 138 ------~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+...+.+...+...... .+.+.||+|+|.++|.|+ +.+...++++++++.|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~fDvI~CRNVLiYf--~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQY----NVPGPFDAIFCRNVMIYF--DKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSC----CCCCCEEEEEECSSGGGS--CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhcccccc----CCCCCccEEEeehhHHhc--CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0011224455555443221 135789999999999998 6778899999999999999998764
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.13 E-value=7.1e-11 Score=107.36 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=88.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||++||+|.++..++..+...|+++|+|+.+++.|++++.. +++. .+++++++|+.+.- ....
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~--------n~l~~~~~~~i~~d~~~~l-~~~~ 212 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA--------NHLDMANHQLVVMDVFDYF-KYAR 212 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH--------TTCCCTTEEEEESCHHHHH-HHHH
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHH--------hcccCcceEEEEccHHHHH-HHHH
Confidence 457899999999999999988777777899999999999999999863 3333 47899999996531 1001
Q ss_pred CCCCCeeEEEeccc-----ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 161 ADDAPFDICSCQFA-----MHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 161 ~~~~~fD~V~~~~~-----l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....+||+|++.-- -...+....+...++..+.++|+|||.+++++-
T Consensus 213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 13468999998521 112223345677899999999999999998764
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.12 E-value=1.6e-10 Score=97.36 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=59.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.|.+|||+|||+|.++..++..+..+|+|+|+++.+++.|+++.. ++.++++|+.++ +
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~--------------~~~~~~~D~~~l--------~ 105 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------------GVNFMVADVSEI--------S 105 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCGGGC--------C
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc--------------cccEEEEehhhc--------C
Confidence 688999999999998888777777789999999999999998875 478999998753 3
Q ss_pred CCeeEEEeccc
Q 017369 164 APFDICSCQFA 174 (372)
Q Consensus 164 ~~fD~V~~~~~ 174 (372)
++||+|+++--
T Consensus 106 ~~fD~Vi~NPP 116 (197)
T d1ne2a_ 106 GKYDTWIMNPP 116 (197)
T ss_dssp CCEEEEEECCC
T ss_pred CcceEEEeCcc
Confidence 68999999744
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.12 E-value=1.1e-10 Score=105.03 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=88.0
Q ss_pred hhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeE
Q 017369 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPAR 145 (372)
Q Consensus 67 ~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~ 145 (372)
+....|++..+.. ..++.+|||++||+|.++..++..+. +|++||.|+.+++.|++++.. +++. .++.
T Consensus 117 r~nr~~~~~~~~~--~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~l--------n~~~~~~~~ 185 (309)
T d2igta1 117 IVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVL--------AGLEQAPIR 185 (309)
T ss_dssp HHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHH--------HTCTTSCEE
T ss_pred hHHHHHHHHHHhh--ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhh--------hcccCCcEE
Confidence 3444555555433 35678999999999999998877655 899999999999999998763 3333 3689
Q ss_pred EEECcCcccccccccCCCCCeeEEEec---cccc---ccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 146 LICGDCYEVHLDKVLADDAPFDICSCQ---FAMH---YSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 146 ~~~~D~~~~~~~~~~~~~~~fD~V~~~---~~l~---~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
|+++|+.+.--. .......||+|++. ++.. -.+.-..+...++..+..+|+|||.+++.+
T Consensus 186 ~i~~D~~~~l~~-~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 186 WICEDAMKFIQR-EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp EECSCHHHHHHH-HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred EEeCCHHHhHHH-HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999754210 00134789999984 2110 001123556677788999999998755443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.01 E-value=1.3e-09 Score=92.52 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=62.3
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
-.|.+|||+|||+|.++..++..+...|+|+|+++.+++.|++++.. ...+..++++|+...
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~----------~~~~~~~~~~d~~~~-------- 106 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE----------FKGKFKVFIGDVSEF-------- 106 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG----------GTTSEEEEESCGGGC--------
T ss_pred CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHH----------cCCCceEEECchhhh--------
Confidence 36789999999999999888777777899999999999999998763 244688899998653
Q ss_pred CCCeeEEEecccc
Q 017369 163 DAPFDICSCQFAM 175 (372)
Q Consensus 163 ~~~fD~V~~~~~l 175 (372)
+++||+|+++--.
T Consensus 107 ~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 107 NSRVDIVIMNPPF 119 (201)
T ss_dssp CCCCSEEEECCCC
T ss_pred CCcCcEEEEcCcc
Confidence 4679999997654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.00 E-value=1.4e-09 Score=95.05 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=75.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+|||||||+|..+..+++.. ..+++..|+ ++.++.+ +...+++++.+|+.+. .
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~---------------~~~~rv~~~~gD~f~~-~----- 136 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL---------------SGSNNLTYVGGDMFTS-I----- 136 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC---------------CCBTTEEEEECCTTTC-C-----
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC---------------cccCceEEEecCcccC-C-----
Confidence 345789999999999999998864 347999998 3343322 2245799999998752 1
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC---cEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG---GTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg---G~li~~ 205 (372)
..+|++++..++|+. +.++..++|+++++.|+|| |++++.
T Consensus 137 --p~aD~~~l~~vLHdw--~d~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 137 --PNADAVLLKYILHNW--TDKDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp --CCCSEEEEESCGGGS--CHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred --CCCcEEEEEeecccC--ChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 358999999999986 6788899999999999998 665543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=5.7e-10 Score=93.28 Aligned_cols=106 Identities=9% Similarity=0.007 Sum_probs=81.6
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+.+|||++||+|.++.+.+.++..+|++||.++.+++.+++++...+ ..++.++.+|+.+.... ..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~---------~~~~~ii~~d~~~~l~~----~~ 109 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK---------AGNARVVNSNAMSFLAQ----KG 109 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT---------CCSEEEECSCHHHHHSS----CC
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcc---------ccceeeeeecccccccc----cc
Confidence 578999999999999999998888899999999999999999886321 34688899998654211 45
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHH--hcCCCcEEEEEeC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMP 207 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~li~~~~ 207 (372)
.+||+|++.--... .....++..+.+ .|+++|.+++...
T Consensus 110 ~~fDlIf~DPPY~~-----~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 110 TPHNIVFVDPPFRR-----GLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp CCEEEEEECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccCEEEEcCcccc-----chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 78999999754321 234456666654 6999999988753
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=2.1e-09 Score=94.90 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=79.7
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+..+|||+|||+|..+..++..+..+|+++|+|+.+++.|++++.. .++..++.+..+|..+.... .
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~--------~~~~~~~~i~~~~~~~~~~~----~ 176 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER--------HGVSDRFFVRKGEFLEPFKE----K 176 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH--------TTCTTSEEEEESSTTGGGGG----G
T ss_pred ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHH--------cCCCceeEEeeccccccccc----c
Confidence 34568999999999988888777777899999999999999999874 44556788888888763321 2
Q ss_pred CCCeeEEEeccc-------cc--ccCCCHH------HHHHHHH-HHHHhcCCCcEEEEEeCC
Q 017369 163 DAPFDICSCQFA-------MH--YSWSTEA------RARRALA-NVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 163 ~~~fD~V~~~~~-------l~--~~~~~~~------~~~~~l~-~i~~~LkpgG~li~~~~~ 208 (372)
.++||+|+++-- +. ..+++.. +-..+++ -+.+.|+|||++++.+..
T Consensus 177 ~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~ 238 (271)
T d1nv8a_ 177 FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 238 (271)
T ss_dssp TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence 478999999731 00 0011111 0011222 245789999999998753
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.97 E-value=4.3e-10 Score=93.01 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=73.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.++..++..+. +++++|.++.+++.|+++++. .++.. ++...++.........
T Consensus 38 ~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~--------~~~~~--~v~~~~~d~~~~~~~~ 106 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRR--------TGLGA--RVVALPVEVFLPEAKA 106 (171)
T ss_dssp HCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHH--------HTCCC--EEECSCHHHHHHHHHH
T ss_pred cccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHh--------hcccc--ceeeeehhcccccccc
Confidence 346788999999999999998877665 899999999999999998874 22333 3444444321100001
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
...+||+|++.--.+. +-......++. ...|+|||++++..+
T Consensus 107 -~~~~fD~If~DPPY~~--~~~~~l~~l~~--~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 107 -QGERFTVAFMAPPYAM--DLAALFGELLA--SGLVEAGGLYVLQHP 148 (171)
T ss_dssp -TTCCEEEEEECCCTTS--CTTHHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred -cCCccceeEEcccccc--CHHHHHHHHHH--cCCcCCCeEEEEEec
Confidence 4578999998643221 11122333332 357999999988764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.96 E-value=5.3e-10 Score=93.34 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=83.3
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
..+.+|||++||+|.++.+.+..+..+|++||.++.+++.+++++.. .+...++.++++|+.+.- ......
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~--------~~~~~~~~i~~~D~~~~l-~~~~~~ 110 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAI--------TKEPEKFEVRKMDANRAL-EQFYEE 110 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------HTCGGGEEEEESCHHHHH-HHHHHT
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhh--------hhcccccccccccchhhh-hhhccc
Confidence 36899999999999999999999888999999999999999998863 233557999999986531 100113
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHH--hcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~li~~~~ 207 (372)
..+||+|++.--... ......+..+.. .|+|+|.+++..+
T Consensus 111 ~~~fDlIflDPPY~~-----~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 111 KLQFDLVLLDPPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp TCCEEEEEECCCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCcceEEechhhhh-----hHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 468999998653221 224456666654 6999999988764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=2.7e-09 Score=91.26 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=80.5
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--cccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV 159 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~ 159 (372)
+..+|||+|||+|..+..++.. ..++|+++|+++.+++.|++++.. .++..+++++.+|+.+.- +...
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~--------~gl~~~i~l~~Gd~~e~l~~l~~~ 127 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF--------AGLQDKVTILNGASQDLIPQLKKK 127 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH--------HTCGGGEEEEESCHHHHGGGHHHH
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHH--------cCCCccceeeeccccccccchhhc
Confidence 4479999999999998888764 346899999999999999998874 566778999999987631 1111
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ..++||+|++...-.+ ......+.+..++|+|||++++.
T Consensus 128 ~-~~~~~D~ifiD~~~~~-----~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 128 Y-DVDTLDMVFLDHWKDR-----YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp S-CCCCEEEEEECSCGGG-----HHHHHHHHHHTTCEEEEEEEEES
T ss_pred c-cccccceeeecccccc-----cccHHHHHHHhCccCCCcEEEEe
Confidence 1 3468999998643222 12334577788999999998864
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=8.5e-09 Score=90.26 Aligned_cols=100 Identities=9% Similarity=0.188 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHh--CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeE
Q 017369 69 LNNWIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR 145 (372)
Q Consensus 69 ~~~~~k~~l~~~~--~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 145 (372)
+..|+..++.... ..+..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+. .++..++.
T Consensus 44 ~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~--------n~l~~~~~ 115 (250)
T d2h00a1 44 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ--------NNLSDLIK 115 (250)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEE
T ss_pred HHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHH--------hCCCccee
Confidence 3456666543222 134569999999999998888764 345899999999999999999874 45667788
Q ss_pred EEECcCccccccccc-CCCCCeeEEEeccccc
Q 017369 146 LICGDCYEVHLDKVL-ADDAPFDICSCQFAMH 176 (372)
Q Consensus 146 ~~~~D~~~~~~~~~~-~~~~~fD~V~~~~~l~ 176 (372)
+.+.+.....+.... ...++||+|+|+--.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~ 147 (250)
T d2h00a1 116 VVKVPQKTLLMDALKEESEIIYDFCMCNPPFF 147 (250)
T ss_dssp EEECCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred eeeeccHHhhhhhhhhcccCceeEEEecCccc
Confidence 887765443221111 1346899999986554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.1e-08 Score=85.84 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=83.4
Q ss_pred CCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc-cc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~ 159 (372)
....+|||+|||+|.-+..++.. ..++++.+|++++..+.|++.+.. .++..+++++.+|+.+..-. ..
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~--------ag~~~~i~~~~Gda~e~l~~~~~ 129 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ--------AEAEHKIDLRLKPALETLDELLA 129 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH--------TTCTTTEEEEESCHHHHHHHHHH
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHh--------cCccceEEEEEeehhhcchhhhh
Confidence 45679999999999988888764 356899999999999999999874 55677899999998653210 00
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
-...++||+|+....- ......++.+.+.|+|||.+++.-
T Consensus 130 ~~~~~~fD~ifiD~dk-------~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 130 AGEAGTFDVAVVDADK-------ENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp TTCTTCEEEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hcccCCccEEEEeCCH-------HHHHHHHHHHHHHhcCCcEEEEeC
Confidence 0135789999876433 235567888899999999998854
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.74 E-value=1e-08 Score=91.00 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=83.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc-ccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH-QRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.++..+||.+|+|.|..+..+++....+|++||+++.+++.|++.+.-..... ........+++++.+|+...--
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~---- 145 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK---- 145 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH----
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh----
Confidence 45668999999999999999888777789999999999999998764211000 0001124689999999976432
Q ss_pred CCCCCeeEEEecccccccCCCHHH--HHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+++||+|++...-... .... -..+++.+.+.|+|||.++...
T Consensus 146 -~~~~yDvIi~D~~~~~~--~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 146 -NNRGFDVIIADSTDPVG--PAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp -HCCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccCCCCEEEEeCCCCCC--CcccccCHHHHHhhHhhcCCCceEEEec
Confidence 35789999986433211 1111 1579999999999999998754
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.73 E-value=2.9e-08 Score=90.48 Aligned_cols=128 Identities=17% Similarity=0.148 Sum_probs=86.7
Q ss_pred chhhhHHHHHHHHHH-hCCCCCEEEEecCCccccHHHHHHc------CCCEEEEEeCChHHHHHHHHHhcCCCccccccc
Q 017369 66 LKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK 138 (372)
Q Consensus 66 ~~~~~~~~k~~l~~~-~~~~~~~VLDlGcG~G~~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~ 138 (372)
.+.....+..++..+ ...++.+|||.|||+|.++..+... ....++|+|+++.+++.|+.+....
T Consensus 98 P~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-------- 169 (328)
T d2f8la1 98 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-------- 169 (328)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH--------
T ss_pred cHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh--------
Confidence 444444444444333 3456789999999999998887542 2236999999999999998876521
Q ss_pred CCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCH--------------HHHHHHHHHHHHhcCCCcEEEE
Q 017369 139 KFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE--------------ARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 139 ~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--------------~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.....+.++|..... +..+||+|+++--........ .....++..+.+.|+|||++++
T Consensus 170 --~~~~~~~~~d~~~~~------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~ 241 (328)
T d2f8la1 170 --RQKMTLLHQDGLANL------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF 241 (328)
T ss_dssp --TCCCEEEESCTTSCC------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred --hhhhhhhcccccccc------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence 234667777765433 457899999985432211111 1123478999999999999988
Q ss_pred EeCCh
Q 017369 205 TMPDA 209 (372)
Q Consensus 205 ~~~~~ 209 (372)
.+|+.
T Consensus 242 I~p~~ 246 (328)
T d2f8la1 242 LVPDA 246 (328)
T ss_dssp EEEGG
T ss_pred EecCc
Confidence 88764
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=4.7e-08 Score=80.97 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=89.3
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
++.++..+.+.++..++|..||.|+++..++.. .++|+|+|.++.+++.|+++. ..++.+++++..
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~-------------~~~~~~~~~~f~ 72 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH-------------LPGLTVVQGNFR 72 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC-------------CTTEEEEESCGG
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc-------------ccceeEeehHHH
Confidence 455666667889999999999999999999886 459999999999999998753 236889998877
Q ss_pred ccccccccCCCCCeeEEEeccccccc-----CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~-----~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++.........+.+|.|+....+... ..........|......|+|||.+++.+-+.
T Consensus 73 ~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 73 HLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp GHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 65421101134679999987644211 0111234567888999999999988766544
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.66 E-value=4.2e-08 Score=84.81 Aligned_cols=74 Identities=11% Similarity=0.218 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.+..++....+.++.+|||||||+|.++..++.. ..+|+++|+++.+++.+++++.. ..++.++++|
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~-----------~~n~~i~~~D 75 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD-----------HDNFQVLNKD 75 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT-----------CCSEEEECCC
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhc-----------ccchhhhhhh
Confidence 44556666667789999999999999999999876 45899999999999999998763 3479999999
Q ss_pred Cccccc
Q 017369 151 CYEVHL 156 (372)
Q Consensus 151 ~~~~~~ 156 (372)
+.+.++
T Consensus 76 ~l~~~~ 81 (235)
T d1qama_ 76 ILQFKF 81 (235)
T ss_dssp GGGCCC
T ss_pred hhhccc
Confidence 998776
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.62 E-value=6.1e-08 Score=80.58 Aligned_cols=111 Identities=13% Similarity=0.096 Sum_probs=80.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+.+|||+.||+|.++.+.+.++..+|+.||.+..+++..+++++..+. ......+...|+.+.... ....
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~-------~~~~~~~~~~d~~~~l~~--~~~~ 113 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC-------SSEQAEVINQSSLDFLKQ--PQNQ 113 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-------CTTTEEEECSCHHHHTTS--CCSS
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcc-------cccccccccccccccccc--cccC
Confidence 5789999999999999999999999999999999999999998864211 022456667765432111 1134
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHH--hcCCCcEEEEEeCC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD 208 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~li~~~~~ 208 (372)
.+||+|++.--... ......+..+.. .|+++|.+++..+.
T Consensus 114 ~~fDlIFlDPPY~~-----~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 114 PHFDVVFLDPPFHF-----NLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp CCEEEEEECCCSSS-----CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CcccEEEechhHhh-----hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 57999998654332 234566777654 79999999987654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.60 E-value=5.9e-08 Score=87.38 Aligned_cols=117 Identities=17% Similarity=0.082 Sum_probs=82.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+...+||.||+|.|..+..+++.. ..+|++||+++.+++.|++.+...+.. ..-..+++++.+|+.+.-..
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~----~~~d~rv~i~~~Da~~~l~~--- 147 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQG----AFDDPRAVLVIDDARAYLER--- 147 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTT----GGGCTTEEEEESCHHHHHHH---
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccC----ccCCCceEEEEchHHHHhhh---
Confidence 4556799999999999998887764 568999999999999999886421000 11245799999999864321
Q ss_pred CCCCCeeEEEecccccccCCCH-H--HHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTE-A--RARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~-~--~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.+||+|++...=.+..... . --..+++.+.+.|+|||.++...
T Consensus 148 -~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 148 -TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp -CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred -cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 357899999754211110000 0 12479999999999999998754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.60 E-value=2.1e-07 Score=80.84 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=74.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+|||||||+|.++..+++.. ..+++++|+.+. ++. .....++.+..+|+.+ +.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~---------------~~~~~r~~~~~~d~~~-~~----- 137 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IED---------------APSYPGVEHVGGDMFV-SI----- 137 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTT---------------CCCCTTEEEEECCTTT-CC-----
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhh---------------cccCCceEEecccccc-cC-----
Confidence 345789999999999999999864 447999999652 221 1224579999999865 22
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
| ..|++++..++|.. +.++...+|++++++|+|||.+++.
T Consensus 138 P--~ad~~~l~~vlh~~--~d~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 138 P--KADAVFMKWICHDW--SDEHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp C--CCSCEECSSSSTTS--CHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred C--CcceEEEEEEeecC--CHHHHHHHHHHHHHhcCCCceEEEE
Confidence 3 35777888888875 6688999999999999999987764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.58 E-value=8e-08 Score=82.43 Aligned_cols=106 Identities=13% Similarity=0.127 Sum_probs=82.2
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc-
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL- 160 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~- 160 (372)
...+|||+|+++|.-+..++.. ..++++.+|.+++..+.|++.+.. .++..++.++.+|+.+.- ....
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~--------~g~~~~i~~~~g~a~~~L-~~l~~ 129 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK--------AGVDHKIDFREGPALPVL-DEMIK 129 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHH-HHHHH
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHH--------hccccceeeeehHHHHHH-HHHHh
Confidence 5679999999999888888764 356999999999999999999875 556678999999986531 1100
Q ss_pred --CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
...++||+|+....- ......++.+.+.|+|||.+++.
T Consensus 130 ~~~~~~~fD~iFiDa~k-------~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 130 DEKNHGSYDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp CGGGTTCBSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred ccccCCceeEEEeccch-------hhhHHHHHHHHhhcCCCcEEEEc
Confidence 024689999986432 23557888889999999999876
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.58 E-value=4.4e-08 Score=83.76 Aligned_cols=110 Identities=23% Similarity=0.253 Sum_probs=75.5
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
++......++.+|||.|||+|.++..+.+. ....++|+|+++.++.. .....++++|...
T Consensus 11 m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~------------------~~~~~~~~~~~~~ 72 (223)
T d2ih2a1 11 MVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL------------------PPWAEGILADFLL 72 (223)
T ss_dssp HHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC------------------CTTEEEEESCGGG
T ss_pred HHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh------------------cccceeeeeehhc
Confidence 333445678899999999999998887653 34569999999854322 2235678888765
Q ss_pred cccccccCCCCCeeEEEecccccccCCC-------------------------HHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWST-------------------------EARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~-------------------------~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.. ....||+|+++......... ..-...++..+.+.|+|||++.+.+|+
T Consensus 73 ~~------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 73 WE------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp CC------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cc------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 44 35789999997543211000 001346678899999999999888875
Q ss_pred h
Q 017369 209 A 209 (372)
Q Consensus 209 ~ 209 (372)
.
T Consensus 147 ~ 147 (223)
T d2ih2a1 147 T 147 (223)
T ss_dssp G
T ss_pred e
Confidence 4
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.53 E-value=9.1e-09 Score=89.56 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++....+.++.+|||||||+|.++..++..+ .+|++||+++.+++.+++++.. ..++.++++|+.
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~-----------~~n~~ii~~D~l 85 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL-----------NTRVTLIHQDIL 85 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT-----------CSEEEECCSCCT
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhh-----------ccchhhhhhhhh
Confidence 4556666677889999999999999999998764 5899999999998887766542 347999999999
Q ss_pred ccccccccCCCCCeeEEEeccccc
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~ 176 (372)
+.++ +...++.|+++.-.+
T Consensus 86 ~~~~-----~~~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 86 QFQF-----PNKQRYKIVGNIPYH 104 (245)
T ss_dssp TTTC-----CCSSEEEEEEECCSS
T ss_pred cccc-----ccceeeeEeeeeehh
Confidence 8877 556677777665543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.53 E-value=1.5e-07 Score=84.07 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=82.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+...+||-||.|.|..+..+++.. ..+|+.||+++.+++.|++.+..... .--..+++++.+|+...--.
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~-----~~~dprv~i~i~Da~~~l~~--- 175 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC-----GFSHPKLDLFCGDGFEFLKN--- 175 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG-----GGGCTTEEEECSCHHHHHHH---
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcc-----ccCCCCeEEEEchHHHHHHh---
Confidence 3456799999999999999998864 46899999999999999998753211 11246899999998764321
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
...+||+|++...-.......---..+++.+.+.|+|||.++....+
T Consensus 176 -~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 176 -HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp -CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred -CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 35789999986432211111112367899999999999999987654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.9e-07 Score=82.79 Aligned_cols=118 Identities=19% Similarity=0.122 Sum_probs=82.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+...+||-+|.|.|..+..+++. +..+++.+|+++.+++.|++.+.... ...-..+++++.+|+...--.
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~-----~~~~d~rv~i~~~Da~~~l~~--- 147 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA-----IGYSSSKLTLHVGDGFEFMKQ--- 147 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-----GGGGCTTEEEEESCHHHHHHT---
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc-----cccCCCCceEEEccHHHHHhc---
Confidence 345679999999999999999876 45689999999999999998764210 011246899999998764321
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|++...-.......---..+++.+++.|+|||.++....+
T Consensus 148 -~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 148 -NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp -CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 35689999986422111000111347899999999999999986643
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=2.1e-07 Score=82.78 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=83.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+...+||-||.|.|..+..+++.. ..+|++||+++.+++.|++.+.... ..--..+++++.+|+...--.
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-----~~~~d~rv~v~~~Da~~~l~~---- 158 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-----CGFDDPRAEIVIANGAEYVRK---- 158 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-----GGGGCTTEEEEESCHHHHGGG----
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-----ccccCCCcEEEhhhHHHHHhc----
Confidence 456799999999999999888764 5679999999999999998764210 011145899999999764321
Q ss_pred CCCCeeEEEecccccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 162 DDAPFDICSCQFAMHYSWST-EARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~-~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..++||+|++...-...... .---..+++.+.+.|+|||.++....++
T Consensus 159 ~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 159 FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 35789999986432210000 0012589999999999999999877553
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.46 E-value=2.7e-07 Score=81.43 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=84.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.....+||-+|.|.|..+..+++. +..+++.+||++.+++.|++.+.... ...-..+++++.+|+...-..
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~-----~~~~d~r~~i~~~D~~~~l~~--- 144 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA-----GKLDDPRVDVQVDDGFMHIAK--- 144 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH-----TTTTSTTEEEEESCSHHHHHT---
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhc-----ccccCCCeEEEechHHHHHhh---
Confidence 355689999999999999998875 45689999999999999999764210 011246899999998763321
Q ss_pred CCCCCeeEEEeccccc-----ccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 161 ADDAPFDICSCQFAMH-----YSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
...+||+|++...-. +++ -..+++.+.+.|+|||.++....+
T Consensus 145 -~~~~yDvIi~D~~~p~~~~~~L~-----t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 145 -SENQYDVIMVDSTEPVGPAVNLF-----TKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp -CCSCEEEEEESCSSCCSCCCCCS-----TTHHHHHHHHHEEEEEEEEEECCC
T ss_pred -cCCCCCEEEEcCCCCCCcchhhc-----cHHHHHHHHhhcCCCceEEEecCC
Confidence 357899999864221 122 247999999999999999987654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.40 E-value=3.3e-07 Score=81.47 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=84.2
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+...+||-||.|.|..+..+++. +..+++++|+++.+++.|++.+.... ...-..+++++.+|+...-.. .
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~-----~~~~~~r~~i~~~Da~~~l~~--~- 150 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA-----IGYEDPRVNLVIGDGVAFLKN--A- 150 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-----GGGGSTTEEEEESCHHHHHHT--S-
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh-----ccccCCCcEEEEccHHHHHhh--c-
Confidence 45579999999999999998876 44689999999999999998763210 012256899999998754321 0
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..++||+|++...-.......---..+++.+.+.|+|||.++...++.
T Consensus 151 ~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 151 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred cccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 346899999754211100000012579999999999999999877653
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=1.9e-06 Score=70.93 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=78.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
++++.+||||||++|+++..+... ..+.++|+|+.+- . ...++.++++|..+......
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-----------~i~~~~~~~~d~~~~~~~~~ 79 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-----------PIVGVDFLQGDFRDELVMKA 79 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-----------CCTTEEEEESCTTSHHHHHH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-----------ccCCceEeecccccchhhhh
Confidence 578999999999999999987763 4467999998661 1 13468899999876432111
Q ss_pred ---cCCCCCeeEEEecccccccCC-------CHHHHHHHHHHHHHhcCCCcEEEEEeCC---hHHHHHHHhh
Q 017369 160 ---LADDAPFDICSCQFAMHYSWS-------TEARARRALANVSALLRPGGTFIGTMPD---ANVIIKKLRE 218 (372)
Q Consensus 160 ---~~~~~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~i~~~LkpgG~li~~~~~---~~~~~~~l~~ 218 (372)
.....++|+|++..+..-.=. ..+-....+.-+.+.|++||.|++-+-+ ...++..+..
T Consensus 80 ~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~ 151 (180)
T d1ej0a_ 80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS 151 (180)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred hhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence 113578999999875432100 0112345667778899999999987643 3445555544
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.2e-05 Score=70.60 Aligned_cols=89 Identities=21% Similarity=0.339 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.+..++....+.++..|||||+|+|.++..++..+ .+|+++|+++.+++..++.+.. .....+++++.+|
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~--------~~~~~~~~~i~~D 78 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQG--------TPVASKLQVLVGD 78 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTT--------STTGGGEEEEESC
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhh--------hccccchhhhHHH
Confidence 445566666677789999999999999999998875 5999999999999999998763 2224579999999
Q ss_pred CcccccccccCCCCCeeEEEecccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAM 175 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l 175 (372)
+...++ ..++.|+.+.-.
T Consensus 79 ~l~~~~-------~~~~~vV~NLPY 96 (278)
T d1zq9a1 79 VLKTDL-------PFFDTCVANLPY 96 (278)
T ss_dssp TTTSCC-------CCCSEEEEECCG
T ss_pred Hhhhhh-------hhhhhhhcchHH
Confidence 987665 234567665443
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=3e-06 Score=77.64 Aligned_cols=125 Identities=16% Similarity=0.128 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
++.++......++.+|||+.||.|.++..+++ ...+|+|+|+++.+++.|++++... + ..++.|+.+|..
T Consensus 201 ~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~na~~n--------~-i~n~~~~~~~~~ 270 (358)
T d1uwva2 201 VARALEWLDVQPEDRVLDLFCGMGNFTLPLAT-QAASVVGVEGVPALVEKGQQNARLN--------G-LQNVTFYHENLE 270 (358)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHT--------T-CCSEEEEECCTT
T ss_pred HHHHHHhhccCCCceEEEecccccccchhccc-cccEEEeccCcHHHHHHHHHhHHhc--------c-cccceeeecchh
Confidence 33344444566889999999999999998865 4568999999999999999987632 2 347999999987
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
+....... ....+|+|+..--=.- ..+.+..+.+. +|.-.++++. |+..+...+.
T Consensus 271 ~~~~~~~~-~~~~~d~vilDPPR~G-------~~~~~~~l~~~-~~~~ivYVSC-np~TlaRDl~ 325 (358)
T d1uwva2 271 EDVTKQPW-AKNGFDKVLLDPARAG-------AAGVMQQIIKL-EPIRIVYVSC-NPATLARDSE 325 (358)
T ss_dssp SCCSSSGG-GTTCCSEEEECCCTTC-------CHHHHHHHHHH-CCSEEEEEES-CHHHHHHHHH
T ss_pred hhhhhhhh-hhccCceEEeCCCCcc-------HHHHHHHHHHc-CCCEEEEEeC-CHHHHHHHHH
Confidence 63221111 3467999987542211 12345555543 5655555554 5555544443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.26 E-value=2.3e-06 Score=80.38 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=86.8
Q ss_pred cccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc----C----------CCEEEEEeCChHHHHHHHHHhc
Q 017369 63 IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA----K----------IGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 63 ~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~----~----------~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
.+..+.+... ++..+.+.++.+|+|.+||+|+++..+.+. . ...++|+|+++.+...|+-++.
T Consensus 144 f~TP~~Iv~~---mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 144 YFTPRPLIQA---MVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp GCCCHHHHHH---HHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred hccchhhhHh---hheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 3444554333 334445667899999999999999877652 1 1248999999999999988764
Q ss_pred CCCcccccccCCC-cCeEEEECcCcccccccccCCCCCeeEEEeccccccc-------------CCCHHHHHHHHHHHHH
Q 017369 129 GDADHHQRRKKFS-FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS-------------WSTEARARRALANVSA 194 (372)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~-------------~~~~~~~~~~l~~i~~ 194 (372)
- .+.. ....+..+|..... +...||+|+++--+... ......-..++..+..
T Consensus 221 l--------~g~~~~~~~i~~~d~l~~~------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~ 286 (425)
T d2okca1 221 L--------HGIGTDRSPIVCEDSLEKE------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMML 286 (425)
T ss_dssp H--------TTCCSSCCSEEECCTTTSC------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHH
T ss_pred h--------cCCccccceeecCchhhhh------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHH
Confidence 2 1111 23456677776433 45789999998543211 0111123468999999
Q ss_pred hcCCCcEEEEEeCCh
Q 017369 195 LLRPGGTFIGTMPDA 209 (372)
Q Consensus 195 ~LkpgG~li~~~~~~ 209 (372)
.|++||++.+.+|+.
T Consensus 287 ~Lk~~G~~~iI~p~~ 301 (425)
T d2okca1 287 MLKTGGRAAVVLPDN 301 (425)
T ss_dssp HEEEEEEEEEEEEHH
T ss_pred hcCCCCeEEEEechH
Confidence 999999998888754
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=1e-05 Score=67.87 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
+.++....++ ++.+|+|+|||.|.-+..++-. +..+++.+|.+..-+...++..... + -.++++++..+
T Consensus 55 ~DSl~~~~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L--------~-L~nv~v~~~R~ 124 (207)
T d1jsxa_ 55 LDSIVVAPYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL--------K-LENIEPVQSRV 124 (207)
T ss_dssp HHHHHHGGGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT--------T-CSSEEEEECCT
T ss_pred cchHhhhhhh-cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc--------C-Ccceeeeccch
Confidence 3333333334 4679999999999988887754 4468999999998777766655432 1 23799999998
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++.. ...+||+|++..+. ....++.-+...+++||.+++--
T Consensus 125 E~~~------~~~~fD~V~sRA~~--------~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 125 EEFP------SEPPFDGVISRAFA--------SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp TTSC------CCSCEEEEECSCSS--------SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhhc------cccccceehhhhhc--------CHHHHHHHHHHhcCCCcEEEEEC
Confidence 8764 35689999875443 25578888899999999977654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.19 E-value=3.5e-06 Score=75.65 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=80.9
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||++||.|+=+..++.. ..+.++++|+++.-+...+++.... + ..++.....|....+.
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~--------~-~~~i~~~~~d~~~~~~- 181 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL--------G-VLNVILFHSSSLHIGE- 181 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--------T-CCSEEEESSCGGGGGG-
T ss_pred ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH--------H-hhcccccccccccccc-
Confidence 35678999999999999977776653 4568999999999999888877642 2 2356777777766554
Q ss_pred cccCCCCCeeEEEecc------cccccC-----CCHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQF------AMHYSW-----STEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~-----~~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....||.|++.- ++..-. .+.. -..++|.++.+.|||||+++.+|-
T Consensus 182 ----~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 182 ----LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp ----GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ----ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 457899999842 111100 0112 246778899999999999887763
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.17 E-value=2.1e-06 Score=73.50 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCCEEEEecCCccccHHHHHH-----cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
+..+|||+|++.|+-+..++. ...++++|+|+.+.....+. ....+++++++|..+....+
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~--------------~~~~~I~~i~gDs~~~~~~~ 145 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA--------------SDMENITLHQGDCSDLTTFE 145 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG--------------GGCTTEEEEECCSSCSGGGG
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh--------------ccccceeeeecccccHHHHH
Confidence 356999999999986655442 24568999999874322211 11347999999987654433
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+ ....+|+|+.-.. |.. .....-+ ++...|+|||++++.-
T Consensus 146 ~l-~~~~~dlIfID~~-H~~----~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 146 HL-REMAHPLIFIDNA-HAN----TFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp GG-SSSCSSEEEEESS-CSS----HHHHHHH-HHHHTCCTTCEEEECS
T ss_pred HH-HhcCCCEEEEcCC-cch----HHHHHHH-HHhcccCcCCEEEEEc
Confidence 33 3456888877644 432 3333334 4678999999998853
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=2.3e-06 Score=74.23 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.+..++......++..|||||||+|.++..++.. ..+|+++|+++.+++..+++... ..+++++.+|
T Consensus 8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~-----------~~~~~ii~~D 75 (252)
T d1qyra_ 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL-----------GPKLTIYQQD 75 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT-----------GGGEEEECSC
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh-----------ccchhHHhhh
Confidence 33555666667788999999999999999999865 45899999999999998875532 3479999999
Q ss_pred Cccccc
Q 017369 151 CYEVHL 156 (372)
Q Consensus 151 ~~~~~~ 156 (372)
+.+.++
T Consensus 76 ~l~~~~ 81 (252)
T d1qyra_ 76 AMTFNF 81 (252)
T ss_dssp GGGCCH
T ss_pred hhhhcc
Confidence 988765
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.10 E-value=2.1e-05 Score=66.83 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=69.8
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDC 151 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~ 151 (372)
..+....++.++.+|+|||||.|+++..++... ...+.|+|+--..-+ .... ...+. .-+.+...+.
T Consensus 56 ~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-----~P~~------~~~~~~ni~~~~~~~d 124 (257)
T d2p41a1 56 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-----EPIP------MSTYGWNLVRLQSGVD 124 (257)
T ss_dssp HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-----CCCC------CCSTTGGGEEEECSCC
T ss_pred HHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-----CCcc------ccccccccccchhhhh
Confidence 334455577889999999999999999987653 345788887432100 0000 00111 1233333322
Q ss_pred cccccccccCCCCCeeEEEecccccccCC--CHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWS--TEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
. ..+ ++..+|+|+|..+-..--. .......+|+-+.+.|+|||.|++-+.+
T Consensus 125 v-~~l-----~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 125 V-FFI-----PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp T-TTS-----CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred H-Hhc-----CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 1 111 4678999999875321100 0112336677888999999999988754
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=7.4e-06 Score=72.41 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=77.6
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
+...++.+|||+|+|.|+=+..++.. ..+.|+++|+++.-+...+++++..+ .. ++.....|.......
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g--------~~-~~~~~~~~~~~~~~~- 167 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG--------MK-ATVKQGDGRYPSQWC- 167 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT--------CC-CEEEECCTTCTHHHH-
T ss_pred cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc--------cc-ceeeeccccccchhc-
Confidence 45678999999999999988777664 34689999999999999988886432 11 233333333222111
Q ss_pred ccCCCCCeeEEEecc------ccccc------CCC------HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQF------AMHYS------WST------EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~------~l~~~------~~~------~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+.||.|++.- ++..- +.. ..-..++|.++.+.|||||+++.+|-
T Consensus 168 ---~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 168 ---GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp ---TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred ---ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 346899999842 22111 110 01246788999999999999987763
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=5e-05 Score=67.21 Aligned_cols=116 Identities=13% Similarity=0.044 Sum_probs=76.6
Q ss_pred HhCCCCCEEEEecCCccccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+...++.+|||++||.|+-+..++. .+.+.++++|+++.-++.+++++...+ ..++.+...|...+...
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g---------~~~~~~~~~d~~~~~~~ 160 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---------VSCCELAEEDFLAVSPS 160 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEECCGGGSCTT
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC---------ccceeeeehhhhhhccc
Confidence 3567899999999999997777765 356689999999999999999887532 23688888888765421
Q ss_pred cccCCCCCeeEEEecc------cccccC--------CC------HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQF------AMHYSW--------ST------EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~--------~~------~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.. ..+.||.|++.- ++.... +. ......++..+. .|+|||.++.+|-
T Consensus 161 ~~--~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTC 227 (293)
T d2b9ea1 161 DP--RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTC 227 (293)
T ss_dssp CG--GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEES
T ss_pred cc--ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeec
Confidence 11 126799999852 111100 00 011233455555 4799999887763
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=8.3e-06 Score=78.49 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=83.7
Q ss_pred CccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc---C----------------CCEEEEEeCChHHHH
Q 017369 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---K----------------IGYYVGIDIAEGSIE 121 (372)
Q Consensus 61 s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~---~----------------~~~v~gvD~s~~~l~ 121 (372)
...+..+.+... ++..+.+.++.+|+|.+||+|+++...... . ...++|+|+++.+..
T Consensus 144 GqfyTP~~Iv~~---mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~ 220 (524)
T d2ar0a1 144 GQYFTPRPLIKT---IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 220 (524)
T ss_dssp -CCCCCHHHHHH---HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred chhccccchhHh---hhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHH
Confidence 344555555433 333445667889999999999998776542 1 125899999999999
Q ss_pred HHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEeccccccc----------CCCHHHHHHHHHH
Q 017369 122 DCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS----------WSTEARARRALAN 191 (372)
Q Consensus 122 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~----------~~~~~~~~~~l~~ 191 (372)
.|+-++--.+.. ........+..++....+.. ....||+|+++--+..- ......-..++..
T Consensus 221 la~~nl~l~~~~----~~i~~~~~~~~~~~l~~d~~----~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~ 292 (524)
T d2ar0a1 221 LALMNCLLHDIE----GNLDHGGAIRLGNTLGSDGE----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH 292 (524)
T ss_dssp HHHHHHHTTTCC----CBGGGTBSEEESCTTSHHHH----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH
T ss_pred HHHHHHHhhccc----ccccccchhhhhhhhhhccc----ccccceeEEecCCccccccccchhhhccccccccHHHHHH
Confidence 998776421110 00111122344444322211 34689999997533110 0011122358999
Q ss_pred HHHhcCCCcEEEEEeCCh
Q 017369 192 VSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 192 i~~~LkpgG~li~~~~~~ 209 (372)
+.+.|+|||++.+.+|++
T Consensus 293 ~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 293 IIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp HHHHEEEEEEEEEEEEHH
T ss_pred HHHhccccCcEEEEEehH
Confidence 999999999998888754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.90 E-value=1.9e-05 Score=72.29 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=82.0
Q ss_pred CCCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccc------cCCCcCeEEEECcCccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR------KKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~D~~~~~~ 156 (372)
.+.+|||..||+|..++.++. .+...|+.+|+|+.+++.++++++-.+...... ......+.+.+.|+.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 568999999999999997765 466689999999999999999875321100000 0011236667777754433
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
. ....||+|.+.- | ..+..+|..+.+.++.||.+.+|.-|...+
T Consensus 125 ~----~~~~fDvIDiDP---f-----Gs~~pfldsAi~a~~~~Gll~vTaTD~a~L 168 (375)
T d2dula1 125 E----RHRYFHFIDLDP---F-----GSPMEFLDTALRSAKRRGILGVTATDGAPL 168 (375)
T ss_dssp H----STTCEEEEEECC---S-----SCCHHHHHHHHHHEEEEEEEEEEECCHHHH
T ss_pred h----hcCcCCcccCCC---C-----CCcHHHHHHHHHHhccCCEEEEEecCchhh
Confidence 1 346799998654 1 124578999999999999999998776554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=0.00011 Score=62.61 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=73.5
Q ss_pred CCCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
...+|+|+|+|.|.-+..++- .+..+++.+|.+..-+...+...... + -.++.+++..+++...... .
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L--------~-L~n~~i~~~R~E~~~~~~~--~ 138 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL--------Q-LENTTFCHDRAETFGQRKD--V 138 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------T-CSSEEEEESCHHHHTTCTT--T
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh--------C-CCCcEEEeehhhhcccccc--c
Confidence 467999999999998877765 35568999999987666555443321 1 2368888888776542111 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.||+|++-.+. .+..++.-+...+++||.+++-
T Consensus 139 ~~~~D~v~sRAva--------~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 139 RESYDIVTARAVA--------RLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp TTCEEEEEEECCS--------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccceEEEEhhhh--------CHHHHHHHHhhhcccCCEEEEE
Confidence 3689999986543 2567889999999999997754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.04 E-value=0.0027 Score=50.60 Aligned_cols=103 Identities=16% Similarity=0.052 Sum_probs=65.9
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
....++++.+||-+|||. |..+..+++....+|+++|.+++-++.|++... ...+ ..+......
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga--------------~~~~-~~~~~~~~~ 84 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA--------------DVTL-VVDPAKEEE 84 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC--------------SEEE-ECCTTTSCH
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC--------------cEEE-ecccccccc
Confidence 445678999999999985 555666666655689999999999999987543 1222 222111110
Q ss_pred c---ccc--CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 D---KVL--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~---~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. +.+ .....+|+|+-.-.- ...+..+.+.|+|+|++++.
T Consensus 85 ~~~~~~~~~~~g~g~D~vid~~g~----------~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 85 SSIIERIRSAIGDLPNVTIDCSGN----------EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp HHHHHHHHHHSSSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred chhhhhhhcccccCCceeeecCCC----------hHHHHHHHHHHhcCCceEEE
Confidence 0 000 013568988754332 14677788999999998754
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.96 E-value=0.0039 Score=55.86 Aligned_cols=109 Identities=11% Similarity=0.099 Sum_probs=65.7
Q ss_pred CEEEEecCCccccHHHHHHc-----------------CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC--eEE
Q 017369 86 DVVLDLACGKGGDLIKWDKA-----------------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP--ARL 146 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~-----------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~--~~~ 146 (372)
.+|.|+||.+|..+..+... ..-+|.--|+-.+-....-+.+... .....+ +..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~-------~~~~~~~f~~g 125 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE-------NDVDGVCFING 125 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS-------CSCTTCEEEEE
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccc-------ccCCCCeEEEe
Confidence 57999999999977543221 0113555565544333333222210 000111 122
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCC------------------C-----------HHHHHHHHHHHHHhcC
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS------------------T-----------EARARRALANVSALLR 197 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~------------------~-----------~~~~~~~l~~i~~~Lk 197 (372)
+-+....--+ |.++.|++++..++||+-. + ..|+..+|+.=++-|+
T Consensus 126 vpGSFY~rLf-----P~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 200 (359)
T d1m6ex_ 126 VPGSFYGRLF-----PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV 200 (359)
T ss_dssp EESCSSSCCS-----CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC
T ss_pred cCCchhhhcC-----CCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2334433223 7899999999999999721 0 2377889999999999
Q ss_pred CCcEEEEEe
Q 017369 198 PGGTFIGTM 206 (372)
Q Consensus 198 pgG~li~~~ 206 (372)
|||.+++++
T Consensus 201 ~GG~mvl~~ 209 (359)
T d1m6ex_ 201 PGGRMVLTI 209 (359)
T ss_dssp TTCEEEEEE
T ss_pred CCcEEEEEE
Confidence 999998876
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.0015 Score=58.22 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.+..|||+|+|.|.++..++.. +..+|+++|+++..++..++.+. ..++.++.+|+...
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------------~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------------GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------------TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------------CCCcEEEeCchhhc
Confidence 5678999999999999999875 55689999999999999988765 34688899998754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.88 E-value=0.00042 Score=55.64 Aligned_cols=102 Identities=16% Similarity=0.007 Sum_probs=64.6
Q ss_pred HHHhCCCCCEEEEecCC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
....++++.+||-+||| .|..+..+++....+|+++|.+++.++.|++.-.. .++... .+...
T Consensus 21 ~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~---------------~~i~~~-~~~~~ 84 (168)
T d1piwa2 21 VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD---------------HYIATL-EEGDW 84 (168)
T ss_dssp HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS---------------EEEEGG-GTSCH
T ss_pred HHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc---------------EEeecc-chHHH
Confidence 44567899999999998 45566666665555899999999999999875431 122211 01111
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+. ..+.||+|+..-...+- ..+....+.|+|+|++++.
T Consensus 85 ~~~--~~~~~d~vi~~~~~~~~--------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 85 GEK--YFDTFDLIVVCASSLTD--------IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp HHH--SCSCEEEEEECCSCSTT--------CCTTTGGGGEEEEEEEEEC
T ss_pred HHh--hhcccceEEEEecCCcc--------chHHHHHHHhhccceEEEe
Confidence 111 24679988764332211 1235578899999998754
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.74 E-value=0.0016 Score=55.38 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
-..++.....+|..|||.-||+|..+......+ .+.+|+|++++.++.|++|++
T Consensus 202 ~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 202 IERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence 334456667899999999999998777665544 489999999999999999975
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.65 E-value=0.0027 Score=51.08 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=66.2
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
....++++.+||=+|||. |..+..+++.. ..+|+++|.++.-++.|++.-. ..++ |..+..
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa---------------~~~i--~~~~~~ 83 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA---------------TDIL--NYKNGH 83 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC---------------SEEE--CGGGSC
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc---------------cccc--cccchh
Confidence 445678999999999987 66677777654 3479999999999999987532 1122 111111
Q ss_pred ccc---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDK---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+ .......+|+|+-.-... ..++...+.|+|+|.+++.
T Consensus 84 ~~~~v~~~t~g~G~D~vid~~g~~----------~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 84 IEDQVMKLTNGKGVDRVIMAGGGS----------ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp HHHHHHHHTTTSCEEEEEECSSCT----------THHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHhhccCcceEEEccCCH----------HHHHHHHHHHhcCCEEEEE
Confidence 110 011235699987654332 3567778999999998754
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.60 E-value=0.0016 Score=57.36 Aligned_cols=53 Identities=9% Similarity=0.274 Sum_probs=44.1
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
.++.....++..|||.-||+|..+......+ .+.+|+|++++.++.|++|+.+
T Consensus 242 rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 242 FFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSC
T ss_pred HhhhhcccCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHh
Confidence 3345567899999999999998887766554 4899999999999999999863
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.0029 Score=51.08 Aligned_cols=98 Identities=16% Similarity=0.045 Sum_probs=62.5
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc-
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD- 157 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~- 157 (372)
.++++.+||-+|||. |..+..+++... .+|+++|.+++-++.|++... ..++. ..+....
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~--~~~~~~~~ 87 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA---------------DLTLN--RRETSVEE 87 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC---------------SEEEE--TTTSCHHH
T ss_pred CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc---------------eEEEe--ccccchHH
Confidence 457899999999985 556666666544 479999999999999876432 11221 1111110
Q ss_pred -----cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 -----KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 -----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
........+|+|+..-.- ...++...+.|+|||++++.
T Consensus 88 ~~~~i~~~~~~~g~Dvvid~vG~----------~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 88 RRKAIMDITHGRGADFILEATGD----------SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHHHHHTTTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHhhCCCCceEEeecCCc----------hhHHHHHHHHhcCCCEEEEE
Confidence 001123569998854322 13567788999999997643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.0028 Score=50.70 Aligned_cols=103 Identities=13% Similarity=0.002 Sum_probs=64.6
Q ss_pred HHHhCCCCCEEEEecCCcccc-HHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGKGGD-LIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~-~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
....++++.+||=+|||..+. +..+++. +..+|+++|.++.-++.|++.... .++..+-.+..
T Consensus 20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~---------------~~~~~~~~~~~ 84 (171)
T d1pl8a2 20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD---------------LVLQISKESPQ 84 (171)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS---------------EEEECSSCCHH
T ss_pred HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc---------------ccccccccccc
Confidence 445678999999999987554 4444444 555899999999999999764321 11221111110
Q ss_pred -cccc--cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 -LDKV--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 -~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.... ......+|+|+..-.. ...++...+.+++||++++.
T Consensus 85 ~~~~~~~~~~g~g~Dvvid~~G~----------~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 85 EIARKVEGQLGCKPEVTIECTGA----------EASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp HHHHHHHHHHTSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred cccccccccCCCCceEEEeccCC----------chhHHHHHHHhcCCCEEEEE
Confidence 0000 0013578998764432 24678889999999998754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.39 E-value=0.0033 Score=54.15 Aligned_cols=58 Identities=19% Similarity=0.079 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
..+-..++.....++..|||.-||+|..+......+ .+.+|+|+++..++.|++|+..
T Consensus 194 ~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 194 AAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHH
Confidence 334444566677899999999999998877766554 4899999999999999999873
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.38 E-value=0.0061 Score=49.87 Aligned_cols=110 Identities=12% Similarity=0.049 Sum_probs=68.1
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
....++++.+||-+|||. |..+..+++ .+...|+++|.++.-++.|++... ..++ +..+.+
T Consensus 19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga---------------~~~~--~~~~~~ 81 (195)
T d1kola2 19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF---------------EIAD--LSLDTP 81 (195)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---------------EEEE--TTSSSC
T ss_pred HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc---------------cEEE--eCCCcC
Confidence 445678999999999998 445555554 356689999999999999987532 1111 111111
Q ss_pred cccc---cCCCCCeeEEEecccc------cccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKV---LADDAPFDICSCQFAM------HYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~---~~~~~~fD~V~~~~~l------~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+... +.....+|+++-.-.. ++.... ......++.+.+.++|||.+++.
T Consensus 82 ~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~-~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 82 LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKH-EAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp HHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGS-BCTTHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCcEEEEECccccccCCcccceee-cCcHHHHHHHHHHHhcCCEEEEe
Confidence 1000 1124568998864321 111000 11246889999999999998754
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.29 E-value=0.001 Score=56.76 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=67.9
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHH---HHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR---TRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+|||+-||.|.++..++..+. +|+++|-++.+....+ +++...... ......+++++++|..+.--. .
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~---~~~~~~ri~li~~Ds~~~L~~----~ 161 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEI---GGWLQERLQLIHASSLTALTD----I 161 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTT---HHHHHHHEEEEESCHHHHSTT----C
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchh---HHHHhhhheeecCcHHHHHhc----c
Confidence 4899999999999999987764 8999999997655444 333210000 000123689999998663321 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
...||+|+.--.+..- .......+-++-+..++-+ .++.+.+++...
T Consensus 162 ~~~~DvIYlDPMFp~~-~Ksa~~kk~m~~l~~l~~~-------d~d~~~ll~~a~ 208 (250)
T d2oyra1 162 TPRPQVVYLDPMFPHK-QKSALVKKEMRVFQSLVGP-------DLDADGLLEPAR 208 (250)
T ss_dssp SSCCSEEEECCCCCCC-CC-----HHHHHHHHHSCC-------CTTGGGGHHHHH
T ss_pred CCCCCEEEECCCCccc-cccccchhHHHHHHhhccC-------CCCHHHHHHHHH
Confidence 4679999987666432 1112233444444444422 345555555433
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.25 E-value=0.005 Score=48.77 Aligned_cols=49 Identities=27% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHH
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR 126 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~ 126 (372)
....++++.+||=+|||. |..+..+++....+|+++|.++.-++.+++.
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~ 70 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL 70 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence 445678999999999986 4455556665556899999999999988764
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.10 E-value=0.0044 Score=52.60 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=73.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-----------------------------------------CCEEEEEeCChHHHH
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-----------------------------------------IGYYVGIDIAEGSIE 121 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-----------------------------------------~~~v~gvD~s~~~l~ 121 (372)
..+..++|..||+|.++++.+... ...++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 455679999999999887654310 013568888888888
Q ss_pred HHHH---HhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCC-----CHHHHHHHHHHHH
Q 017369 122 DCRT---RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALANVS 193 (372)
Q Consensus 122 ~a~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~i~ 193 (372)
.|+. ++. ..++...+.+.+.|+.+..-.....+....++|+|+--.-.=.+ ..+....++..+.
T Consensus 129 ~A~~~r~n~~--------~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~ 200 (249)
T d1o9ga_ 129 AARRLRERLT--------AEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLA 200 (249)
T ss_dssp HHHHHHHHHH--------HTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHH
Confidence 7743 443 25667789999999876432111113466799999742111111 2356778888899
Q ss_pred HhcCCCcEEEEE
Q 017369 194 ALLRPGGTFIGT 205 (372)
Q Consensus 194 ~~LkpgG~li~~ 205 (372)
++|.....++++
T Consensus 201 ~~~p~~s~~~it 212 (249)
T d1o9ga_ 201 SALPAHAVIAVT 212 (249)
T ss_dssp HHSCTTCEEEEE
T ss_pred ccCCCCcEEEEe
Confidence 999655566655
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.07 E-value=0.011 Score=47.11 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=64.5
Q ss_pred HHHhCCCCCEEEEecCCccc-cHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGKGG-DLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~-~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
....++++.+||=+|||.-+ .+..+++ .+...++.+|.++.-++.|++... ..++..+-.+..
T Consensus 22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga---------------~~~i~~~~~~~~ 86 (174)
T d1f8fa2 22 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA---------------THVINSKTQDPV 86 (174)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC---------------SEEEETTTSCHH
T ss_pred HhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC---------------eEEEeCCCcCHH
Confidence 34467899999999998644 3444443 356678999999999999987543 223332221110
Q ss_pred c-ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 L-DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~-~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
- .... .++.||+|+-.-.. ...++...++++|+|.+++.
T Consensus 87 ~~i~~~-t~gg~D~vid~~G~----------~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 87 AAIKEI-TDGGVNFALESTGS----------PEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp HHHHHH-TTSCEEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHH-cCCCCcEEEEcCCc----------HHHHHHHHhcccCceEEEEE
Confidence 0 0001 24579998854332 24667888999999998753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.84 E-value=0.0044 Score=49.75 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=64.9
Q ss_pred HHhCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 79 QLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
...++++.+||=+|||. |..+..+++. +...|+.+|.+++-++.|++... ..++...-.+...
T Consensus 23 ~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga---------------~~~i~~~~~~~~~ 87 (174)
T d1e3ia2 23 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA---------------TDCLNPRELDKPV 87 (174)
T ss_dssp TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------SEEECGGGCSSCH
T ss_pred hhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC---------------CcccCCccchhhh
Confidence 34568999999999998 6666666664 55579999999998888887533 1122111111000
Q ss_pred ---ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC-cEEEEE
Q 017369 157 ---DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT 205 (372)
Q Consensus 157 ---~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~li~~ 205 (372)
.... ..+.+|+|+-.-.. ...+....+.+++| |.+++.
T Consensus 88 ~~~~~~~-~~~G~d~vie~~G~----------~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 88 QDVITEL-TAGGVDYSLDCAGT----------AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHHHHHH-HTSCBSEEEESSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hhhHhhh-hcCCCcEEEEeccc----------chHHHHHHHHhhcCCeEEEec
Confidence 0001 23679999754332 25688889999996 987754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0064 Score=48.55 Aligned_cols=96 Identities=20% Similarity=0.135 Sum_probs=63.2
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.++++.+||-.|+ |.|..+..+++....++++++-+++.++.+++... ..++ |..+..+.+
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga---------------~~vi--~~~~~~~~~ 87 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA---------------HEVF--NHREVNYID 87 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEE--ETTSTTHHH
T ss_pred CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc---------------cccc--ccccccHHH
Confidence 4678999999997 35666777777666689999999988888875322 1122 222222111
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
. ......+|+|+.... ...+....++|+|+|.++.
T Consensus 88 ~i~~~t~~~g~d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 88 KIKKYVGEKGIDIIIEMLA-----------NVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp HHHHHHCTTCEEEEEESCH-----------HHHHHHHHHHEEEEEEEEE
T ss_pred HhhhhhccCCceEEeeccc-----------HHHHHHHHhccCCCCEEEE
Confidence 1 113467999986432 1356778899999999875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.013 Score=46.45 Aligned_cols=99 Identities=20% Similarity=0.138 Sum_probs=64.6
Q ss_pred HHHhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
....++++.+||=+|||. |..+..+++....+++++|.+++-++.+++.-. ..++...-.+...
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa---------------d~~i~~~~~~~~~ 88 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA---------------DEVVNSRNADEMA 88 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC---------------SEEEETTCHHHHH
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC---------------cEEEECchhhHHH
Confidence 445678999999999975 556667776655688899999988888876543 1222222111111
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
...+.+|+|+..-... ..+....+.|+|||.+++.
T Consensus 89 ----~~~~~~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 89 ----AHLKSFDFILNTVAAP----------HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ----TTTTCEEEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred ----HhcCCCceeeeeeecc----------hhHHHHHHHHhcCCEEEEe
Confidence 1236799988654332 2346677899999998754
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.45 E-value=0.02 Score=49.99 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=67.4
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 165 (372)
.+|||+-||-|++..-+...+...+.++|+++.+.+..+.+.. ...+++|+.++...+ -..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~---------------~~~~~~Di~~~~~~~----~~~ 61 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS---------------AKLIKGDISKISSDE----FPK 61 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC---------------SEEEESCTTTSCGGG----SCC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC---------------CCCccCChhhCCHhH----ccc
Confidence 4799999999999888877777567899999998888777664 345788998875431 246
Q ss_pred eeEEEeccccccc--------CCCHH-HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 166 FDICSCQFAMHYS--------WSTEA-RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 166 fD~V~~~~~l~~~--------~~~~~-~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.|+++..+--+-+ ..+.. .+---+-++...++|.-+++=.++
T Consensus 62 ~dll~~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~ 112 (324)
T d1dcta_ 62 CDGIIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVK 112 (324)
T ss_dssp CSEEEECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred ccEEeecccccccccccccccccccccchHHHHHHHHHhhCCceeeccccc
Confidence 8999876421111 12221 222223345667799755543443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.37 E-value=0.035 Score=43.88 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=63.4
Q ss_pred hCCCCCEEEEecCCccccH-HHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDL-IKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~-~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
..+|+.+||-+|||..+.+ ..+++ .+...++++|.+++-++.+++... ..++..+-.......
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga---------------~~~i~~~~~~~~~~~ 93 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA---------------DHVVDARRDPVKQVM 93 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC---------------SEEEETTSCHHHHHH
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc---------------ceeecCcccHHHHHH
Confidence 3578999999999875544 44444 356689999999998888886432 223332211111000
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.......+|+|+-...-. ..++...+.|++||++++.
T Consensus 94 ~~~~~~g~d~vid~~g~~----------~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 94 ELTRGRGVNVAMDFVGSQ----------ATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp HHTTTCCEEEEEESSCCH----------HHHHHGGGGEEEEEEEEEC
T ss_pred HhhCCCCceEEEEecCcc----------hHHHHHHHHHhCCCEEEEE
Confidence 011235699988654421 4578888999999998754
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.37 E-value=0.17 Score=43.60 Aligned_cols=113 Identities=11% Similarity=-0.058 Sum_probs=72.4
Q ss_pred CCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc---cc
Q 017369 85 GDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---KV 159 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~ 159 (372)
...|+.||||-= +..+... ....++=+|. +++++.-++.+.+.+. ....+...+..|+.+.... ..
T Consensus 90 ~~qvV~LGaGlD--Tr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~------~~~~~~~~v~~Dl~~~~~~~L~~~ 160 (297)
T d2uyoa1 90 IRQFVILASGLD--SRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGV------TPTADRREVPIDLRQDWPPALRSA 160 (297)
T ss_dssp CCEEEEETCTTC--CHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTC------CCSSEEEEEECCTTSCHHHHHHHT
T ss_pred CCeEEEeCcccC--ChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCC------CCCceEEEecccccchHHHHHHhc
Confidence 346677999864 4443222 2335667774 7777766666653211 1123567778887642111 11
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
......--++++-.++.|+ +++...++|+.+.....||+.+++...+
T Consensus 161 g~d~~~ptl~i~EGvl~YL--~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 161 GFDPSARTAWLAEGLLMYL--PATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp TCCTTSCEEEEECSCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred CCCCCCCEEEEEccccccC--CHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 1123455678888889998 7899999999999999999999987643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.34 E-value=0.018 Score=45.29 Aligned_cols=50 Identities=24% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHHHhCCCCCEEEEecCCcccc-HHHHHHcCCCEEEEEeCChHHHHHHHHH
Q 017369 77 LVQLYARRGDVVLDLACGKGGD-LIKWDKAKIGYYVGIDIAEGSIEDCRTR 126 (372)
Q Consensus 77 l~~~~~~~~~~VLDlGcG~G~~-~~~l~~~~~~~v~gvD~s~~~l~~a~~~ 126 (372)
+....++++.+||=.|||.-+. ...+++....+|+++|.+++-++.+++.
T Consensus 20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~ 70 (168)
T d1rjwa2 20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL 70 (168)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence 3445678999999999987553 4444445555899999999999888764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.22 E-value=0.02 Score=45.22 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=64.4
Q ss_pred HHHHhCCCCCEEEEecC-C-ccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 77 LVQLYARRGDVVLDLAC-G-KGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 77 l~~~~~~~~~~VLDlGc-G-~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
+....++++.+||=+|| | .|..+..+++ .+...|+++|.++.-++.+++... ..++..+-.+
T Consensus 20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga---------------~~~i~~~~~~ 84 (170)
T d1jvba2 20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA---------------DYVINASMQD 84 (170)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC---------------SEEEETTTSC
T ss_pred HHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC---------------ceeeccCCcC
Confidence 34456789999999997 4 3444454544 355689999999999988887532 1222222211
Q ss_pred ccc-ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 154 VHL-DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 154 ~~~-~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..- .......+.||+|+....- ...++...+.|+|||.+++.
T Consensus 85 ~~~~~~~~~~~~~~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 85 PLAEIRRITESKGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp HHHHHHHHTTTSCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred HHHHHHHHhhcccchhhhccccc----------chHHHhhhhhcccCCEEEEe
Confidence 100 0001124579999865432 24567778999999998754
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.63 E-value=0.036 Score=48.55 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+.+|||+-||-|++..-+...+..-+.++|+++.+++..+.+... ..++|+.++... .-
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~----------------~~~~Di~~~~~~----~~ 69 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE----------------KPEGDITQVNEK----TI 69 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC----------------CCBSCGGGSCGG----GS
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC----------------CCcCchhcCchh----hc
Confidence 5689999999999999988777775578999999999998887752 124777765532 12
Q ss_pred CCeeEEEecc
Q 017369 164 APFDICSCQF 173 (372)
Q Consensus 164 ~~fD~V~~~~ 173 (372)
..+|+++..+
T Consensus 70 ~~~Dll~ggp 79 (327)
T d2c7pa1 70 PDHDILCAGF 79 (327)
T ss_dssp CCCSEEEEEC
T ss_pred ceeeeeeccc
Confidence 4689998764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.54 E-value=0.18 Score=37.56 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=60.4
Q ss_pred CEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
++|+=+|+|. |..+...+......|+.+|.+++.++.+..... ..++.+|+.+....... .-.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~---------------~~vi~Gd~~~~~~l~~~-~i~ 64 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID---------------ALVINGDCTKIKTLEDA-GIE 64 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS---------------SEEEESCTTSHHHHHHT-TTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh---------------hhhccCcccchhhhhhc-Chh
Confidence 3677778764 333333333344479999999999988766542 56789999875543222 235
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.+|.+++... + +....+...+.+.+.+. ..+..+.+.
T Consensus 65 ~a~~vv~~t~------~-d~~N~~~~~~~k~~~~~-~iI~~~~~~ 101 (132)
T d1lssa_ 65 DADMYIAVTG------K-EEVNLMSSLLAKSYGIN-KTIARISEI 101 (132)
T ss_dssp TCSEEEECCS------C-HHHHHHHHHHHHHTTCC-CEEEECSST
T ss_pred hhhhhcccCC------c-HHHHHHHHHHHHHcCCc-eEEEEecCH
Confidence 6888876321 1 33444555566777777 344444444
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.21 E-value=0.035 Score=44.15 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=37.4
Q ss_pred HHhCCCCCEEEEecCCccccH-HHHHH-cCCCEEEEEeCChHHHHHHHHHh
Q 017369 79 QLYARRGDVVLDLACGKGGDL-IKWDK-AKIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~-~~l~~-~~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
...++++.+||=+|||..+.+ ..+++ .+...|+++|.+++-++.|++.-
T Consensus 22 ~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lG 72 (174)
T d1p0fa2 22 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG 72 (174)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT
T ss_pred hhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcC
Confidence 345789999999999875543 33443 36668999999999999998754
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.07 E-value=0.25 Score=38.36 Aligned_cols=103 Identities=18% Similarity=0.106 Sum_probs=62.0
Q ss_pred EEEEecCCc-cc-cHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 87 VVLDLACGK-GG-DLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 87 ~VLDlGcG~-G~-~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+|+=+|||. |. ++..+.+.+. .+|+|+|.+++.++.|++... +.....+.... ..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~---------------~~~~~~~~~~~-------~~ 60 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---------------IDEGTTSIAKV-------ED 60 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---------------CSEEESCGGGG-------GG
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc---------------chhhhhhhhhh-------hc
Confidence 588899987 43 3334444443 479999999999999887532 11122222111 22
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~ 218 (372)
...|+|+..- +......++.++...++++..++-...-...+.+.+.+
T Consensus 61 ~~~dlIila~-------p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~ 108 (171)
T d2g5ca2 61 FSPDFVMLSS-------PVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN 108 (171)
T ss_dssp TCCSEEEECS-------CHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH
T ss_pred cccccccccC-------CchhhhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence 4678887543 33567788999999999886554333222334444443
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=1.7 Score=37.67 Aligned_cols=119 Identities=13% Similarity=0.038 Sum_probs=67.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCc----------cc--ccccCCCcCeEEEEC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDAD----------HH--QRRKKFSFPARLICG 149 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~----------~~--~~~~~~~~~~~~~~~ 149 (372)
.+...|+-||||.=.....+..... ..++=+|.- ++++.=++.+.+... .. ..-.-...+..++..
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~ 173 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYN-ESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 173 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECH-HHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcH-HHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence 4556899999998766666654332 234455543 333322222211000 00 000001245778888
Q ss_pred cCcccccccc----cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 150 DCYEVHLDKV----LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 150 D~~~~~~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
|+.+...... .......-++++-.++.|+ +++...++++.+.+....++.++.
T Consensus 174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl--~~~~~~~li~~~~~~f~~~~~i~Y 230 (328)
T d1rjda_ 174 DLNDITETTRLLDVCTKREIPTIVISECLLCYM--HNNESQLLINTIMSKFSHGLWISY 230 (328)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcC--CHHHHHHHHHHHHHhCCCceEEEe
Confidence 9887543211 1123445688889999999 778899999999998866554444
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.89 E-value=0.035 Score=44.21 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=37.9
Q ss_pred HhCCCCCEEEEecCCcccc-HHHHHHc-CCCEEEEEeCChHHHHHHHHHhc
Q 017369 80 LYARRGDVVLDLACGKGGD-LIKWDKA-KIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~-~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
..++++.+||=+|||..+. +..+++. +..+|+++|.+++-++.|++...
T Consensus 25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 3468899999999987554 3334443 55689999999999999998765
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.075 Score=42.01 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=64.2
Q ss_pred hCCCCCEEEEecCCc--cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~--G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.++++.+||=.|+|. |..+..+++....+|++++.|++-++.+++.... ..+ |..+.++.+
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~---------------~vi--~~~~~d~~~ 87 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW---------------QVI--NYREEDLVE 87 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS---------------EEE--ETTTSCHHH
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe---------------EEE--ECCCCCHHH
Confidence 467899999997664 5567777776666999999999999998875431 122 222222111
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......+|+|+....-. .+......|+++|.++..
T Consensus 88 ~v~~~t~g~g~d~v~d~~g~~-----------~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 88 RLKEITGGKKVRVVYDSVGRD-----------TWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp HHHHHTTTCCEEEEEECSCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred HHHHHhCCCCeEEEEeCccHH-----------HHHHHHHHHhcCCeeeec
Confidence 1 11346799988654432 346778899999987653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.25 E-value=0.02 Score=45.18 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=64.6
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+..+|+=||+|. |..+...+......|+.+|.+++.++..+..+.. ++.+...+-..+. + .
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-------------~~~~~~~~~~~l~--~---~ 92 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-------------RVELLYSNSAEIE--T---A 92 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-------------GSEEEECCHHHHH--H---H
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-------------cceeehhhhhhHH--H---h
Confidence 468999999997 4455555555667999999999999988877652 3444444332221 1 1
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
-...|+|+..-.+.- ..-+.-+-+++.+.+|||..++
T Consensus 93 ~~~aDivI~aalipG----~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 93 VAEADLLIGAVLVPG----RRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp HHTCSEEEECCCCTT----SSCCCCBCHHHHTTSCTTCEEE
T ss_pred hccCcEEEEeeecCC----cccCeeecHHHHhhcCCCcEEE
Confidence 246899998654321 1223334477889999998765
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.033 Score=48.98 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=52.3
Q ss_pred CCEEEEecCCccccHHHHHHcCCC-E-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIG-Y-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~-~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
..+|+|+.||-|++..-+...+.. + +.++|+++.+++..+.+.. ...++++|+.++..... +
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~--------------~~~~~~~di~~~~~~~~--~ 65 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP--------------HTQLLAKTIEGITLEEF--D 65 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------------TSCEECSCGGGCCHHHH--H
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC--------------CCCcccCchhhCCHhHc--C
Confidence 368999999999988877666653 3 7799999999988887764 24556778876553211 1
Q ss_pred CCCeeEEEecc
Q 017369 163 DAPFDICSCQF 173 (372)
Q Consensus 163 ~~~fD~V~~~~ 173 (372)
...+|+++...
T Consensus 66 ~~~~Dll~ggp 76 (343)
T d1g55a_ 66 RLSFDMILMSP 76 (343)
T ss_dssp HHCCSEEEECC
T ss_pred CCCccEEEeec
Confidence 23689888765
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.15 E-value=0.43 Score=36.78 Aligned_cols=100 Identities=12% Similarity=-0.012 Sum_probs=59.4
Q ss_pred CEEEEecCCc-cc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 86 ~~VLDlGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++|.=||+|. |. ++..+.+. ..+|+++|.+++.++.|++... +.....+.. .-
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~~a~~~~~---------------~~~~~~~~~---------~~ 55 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVERQL---------------VDEAGQDLS---------LL 55 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTS---------------CSEEESCGG---------GG
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHHhhc---------------cceeeeecc---------cc
Confidence 3677789985 22 33444433 4489999999998888766432 111111211 12
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
...|+|+..- +......+++++...|+++-.++-...-.......+.
T Consensus 56 ~~~DiIilav-------p~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~ 102 (165)
T d2f1ka2 56 QTAKIIFLCT-------PIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPAS 102 (165)
T ss_dssp TTCSEEEECS-------CHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHH
T ss_pred cccccccccC-------cHhhhhhhhhhhhhhcccccceeeccccchHHHHHHH
Confidence 4689887532 2356788999999999988866543322233333333
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.46 E-value=0.059 Score=42.78 Aligned_cols=97 Identities=20% Similarity=0.123 Sum_probs=60.8
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.++++.+||=.|. |.|..+..+++....++++++-+++-.+.+++... ...+. ..+..+.+
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga---------------~~vi~--~~~~~~~~ 84 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV---------------EYVGD--SRSVDFAD 84 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC---------------SEEEE--TTCSTHHH
T ss_pred CCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc---------------ccccc--CCccCHHH
Confidence 4678999999873 34667777777666688888888877777764321 11222 12211111
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ......||+|+....- ..++.+.++|+++|+++..
T Consensus 85 ~v~~~t~~~g~d~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 85 EILELTDGYGVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHHHHTTTCCEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHhCCCCEEEEEecccc-----------hHHHHHHHHhcCCCEEEEE
Confidence 0 1134679999875431 3456677899999998754
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=92.27 E-value=0.35 Score=42.91 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--------CCCEEEEEeCChHHHHHHHHHhc
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
+.+|+..+......++...|+|+|+|+|.++..+++. ....++-+|.|+.+.+.-++++.
T Consensus 64 ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 64 LGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 3455555555555556678999999999987766542 23368999999998887777765
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.14 E-value=0.071 Score=42.06 Aligned_cols=96 Identities=17% Similarity=0.059 Sum_probs=60.5
Q ss_pred HHHhCCCCCEEEEecC-Cc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLAC-GK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGc-G~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
....++++.+||=.|. |. |..+..+++....+|++++.+++-++.+++.... . .+ |..+..
T Consensus 21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~--------------~-~i--~~~~~~ 83 (171)
T d1iz0a2 21 KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE--------------E-AA--TYAEVP 83 (171)
T ss_dssp HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS--------------E-EE--EGGGHH
T ss_pred HHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc--------------e-ee--ehhhhh
Confidence 4456789999999884 43 5566677776666899999999888877764321 1 11 222211
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
. .......+|+|+-... ..+....+.|+|||.++.
T Consensus 84 ~--~~~~~~g~D~v~d~~G------------~~~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 84 E--RAKAWGGLDLVLEVRG------------KEVEESLGLLAHGGRLVY 118 (171)
T ss_dssp H--HHHHTTSEEEEEECSC------------TTHHHHHTTEEEEEEEEE
T ss_pred h--hhhccccccccccccc------------hhHHHHHHHHhcCCcEEE
Confidence 1 0002357999875221 124567789999999874
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=91.88 E-value=0.15 Score=40.43 Aligned_cols=99 Identities=15% Similarity=-0.020 Sum_probs=63.7
Q ss_pred HhCCCCCEEEEecCCc--cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-c
Q 017369 80 LYARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-L 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~--G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~ 156 (372)
..++++.+||=.|++. |..+..+++....+|++++-+++-++.+++... -..+..+-.+.. .
T Consensus 25 ~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga---------------~~vi~~~~~~~~~~ 89 (182)
T d1v3va2 25 CGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF---------------DAAFNYKTVNSLEE 89 (182)
T ss_dssp TCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEEETTSCSCHHH
T ss_pred hCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh---------------hhhcccccccHHHH
Confidence 3567899999888855 456677777666799999999988887776533 122221111110 0
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.........+|+|+-.-.- ..++...++|+|||.++.
T Consensus 90 ~~~~~~~~Gvd~v~D~vG~-----------~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 90 ALKKASPDGYDCYFDNVGG-----------EFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp HHHHHCTTCEEEEEESSCH-----------HHHHHHGGGEEEEEEEEE
T ss_pred HHHHhhcCCCceeEEecCc-----------hhhhhhhhhccCCCeEEe
Confidence 0001134679999764321 466889999999999875
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.73 E-value=0.12 Score=40.90 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=62.9
Q ss_pred HhCCCCCEEEEecCC--ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc-Cccccc
Q 017369 80 LYARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-CYEVHL 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~ 156 (372)
...+++.+||=.|++ -|..+..+++....+|+++--|++-.+.+++.... ..+.-+ ......
T Consensus 27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~---------------~vi~~~~~~~~~~ 91 (176)
T d1xa0a2 27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK---------------EVLAREDVMAERI 91 (176)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS---------------EEEECC-------
T ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc---------------eeeecchhHHHHH
Confidence 345568899999864 45577777777677899999999888888765431 111111 000000
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
... ..+.+|+|+-...- ..+....++|+|||+++...
T Consensus 92 -~~~-~~~gvD~vid~vgg-----------~~~~~~l~~l~~~Griv~~G 128 (176)
T d1xa0a2 92 -RPL-DKQRWAAAVDPVGG-----------RTLATVLSRMRYGGAVAVSG 128 (176)
T ss_dssp ---C-CSCCEEEEEECSTT-----------TTHHHHHHTEEEEEEEEECS
T ss_pred -HHh-hccCcCEEEEcCCc-----------hhHHHHHHHhCCCceEEEee
Confidence 001 34689998765432 24678889999999987543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.02 E-value=0.41 Score=37.21 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=61.1
Q ss_pred HhCCCCCEEEEecCCccc-cHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGG-DLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~-~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..++++.+||=.|||..+ .+..+++ .+...|+++|.+++-++.+++.-.. .++..+-......
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~---------------~~i~~~~~~~~~~ 88 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT---------------ECINPQDFSKPIQ 88 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS---------------EEECGGGCSSCHH
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc---------------EEEeCCchhhHHH
Confidence 457899999999998433 3333444 3566899999999999988875431 1221110101100
Q ss_pred cc--cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 158 KV--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 158 ~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.. ....+.+|+|+-.-.-. ..++.+...+++||.+++
T Consensus 89 ~~~~~~~~~g~D~vid~~G~~----------~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 89 EVLIEMTDGGVDYSFECIGNV----------KVMRAALEACHKGWGVSV 127 (176)
T ss_dssp HHHHHHTTSCBSEEEECSCCH----------HHHHHHHHTBCTTTCEEE
T ss_pred HHHHHHcCCCCcEeeecCCCH----------HHHHHHHHhhcCCceeEE
Confidence 00 00235799998654322 466788889999877654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.55 E-value=0.4 Score=37.41 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHhCCCCCEEEEecCCccc-cHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEE-CcCcccc
Q 017369 79 QLYARRGDVVLDLACGKGG-DLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVH 155 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~-~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~ 155 (372)
...++++.+||=+|||.++ ....+++ .+...|+++|.+++-++.+++.... ..+. .+..+..
T Consensus 23 ~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~---------------~~i~~~~~~~~~ 87 (176)
T d2jhfa2 23 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT---------------ECVNPQDYKKPI 87 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS---------------EEECGGGCSSCH
T ss_pred hhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe---------------eEEecCCchhHH
Confidence 3457899999999997654 3333333 3556899999999999988775431 1121 1111100
Q ss_pred --cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC-cEEEEE
Q 017369 156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT 205 (372)
Q Consensus 156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg-G~li~~ 205 (372)
..... ..+.+|+|+-..... ..++.....+++| |.+++.
T Consensus 88 ~~~~~~~-~~~G~D~vid~~G~~----------~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 88 QEVLTEM-SNGGVDFSFEVIGRL----------DTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp HHHHHHH-TTSCBSEEEECSCCH----------HHHHHHHHHBCTTTCEEEEC
T ss_pred HHHHHHH-hcCCCCEEEecCCch----------hHHHHHHHHHhcCCcceEEe
Confidence 00001 346799998755443 3456667778776 555443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.50 E-value=0.51 Score=36.67 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=37.2
Q ss_pred HHhCCCCCEEEEecCCccccHHH-HHH-cCCCEEEEEeCChHHHHHHHHHh
Q 017369 79 QLYARRGDVVLDLACGKGGDLIK-WDK-AKIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~-l~~-~~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
...++++.+||=+|||.+..+.- ++. .+...|+++|.+++-++.|++.-
T Consensus 23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~G 73 (175)
T d1cdoa2 23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG 73 (175)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred hhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcC
Confidence 34678999999999998664433 333 45668999999999999888754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=87.05 E-value=0.57 Score=34.56 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=55.2
Q ss_pred EEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCe
Q 017369 88 VLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (372)
Q Consensus 88 VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~f 166 (372)
++=+|||. |..+...+......|+.+|.+++.++.++.. ....+.+|+.+....... .-..+
T Consensus 3 ~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----------------~~~~~~gd~~~~~~l~~a-~i~~a 65 (134)
T d2hmva1 3 FAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----------------ATHAVIANATEENELLSL-GIRNF 65 (134)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----------------CSEEEECCTTCTTHHHHH-TGGGC
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----------------CCcceeeecccchhhhcc-CCccc
Confidence 45567764 3333333334444799999999988877432 135577888765432211 12467
Q ss_pred eEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 167 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
|.|++...- .+....+-.+.+.+.|.+.++..+.+..
T Consensus 66 ~~vi~~~~~-------~~~~~~~~~~~~~~~~~~~iiar~~~~~ 102 (134)
T d2hmva1 66 EYVIVAIGA-------NIQASTLTTLLLKELDIPNIWVKAQNYY 102 (134)
T ss_dssp SEEEECCCS-------CHHHHHHHHHHHHHTTCSEEEEECCSHH
T ss_pred cEEEEEcCc-------hHHhHHHHHHHHHHcCCCcEEeecccHh
Confidence 877654321 1222333444444556667776665554
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=85.11 E-value=1.6 Score=31.87 Aligned_cols=94 Identities=9% Similarity=-0.037 Sum_probs=59.2
Q ss_pred CCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEe
Q 017369 93 CGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC 171 (372)
Q Consensus 93 cG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~ 171 (372)
||.|..+..+++.-. ..++.+|.++..++.++.. .+.++.+|+.+....... .-..++.+++
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~----------------~~~~i~Gd~~~~~~L~~a-~i~~A~~vi~ 68 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS----------------GANFVHGDPTRVSDLEKA-NVRGARAVIV 68 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT----------------TCEEEESCTTSHHHHHHT-TCTTCSEEEE
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc----------------CccccccccCCHHHHHHh-hhhcCcEEEE
Confidence 455667777766422 2488999999988766432 367889998764422111 2356777775
Q ss_pred cccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 172 QFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 172 ~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
... + +.....+....+.+.|...++..+-+..
T Consensus 69 ~~~------~-d~~n~~~~~~~r~~~~~~~iia~~~~~~ 100 (129)
T d2fy8a1 69 NLE------S-DSETIHCILGIRKIDESVRIIAEAERYE 100 (129)
T ss_dssp CCS------S-HHHHHHHHHHHHHHCSSSCEEEECSSGG
T ss_pred ecc------c-hhhhHHHHHHHHHHCCCceEEEEEcCHH
Confidence 321 1 3334445556677889988888776654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=84.30 E-value=3.5 Score=30.76 Aligned_cols=105 Identities=9% Similarity=-0.122 Sum_probs=59.8
Q ss_pred CEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|+=+|+|. |..+...+......++.+|.+++......+... ...+.++.||..+....... .-.
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~------------~~~~~vi~Gd~~d~~~L~~a-~i~ 70 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL------------GDNADVIPGDSNDSSVLKKA-GID 70 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH------------CTTCEEEESCTTSHHHHHHH-TTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh------------cCCcEEEEccCcchHHHHHh-ccc
Confidence 3577777764 222222223344479999999876544333332 22578899998775432111 235
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
..|.|++... + +.....+....+.+.|...++..+-+.+
T Consensus 71 ~a~~vi~~~~------~-d~~n~~~~~~~r~~~~~~~iia~~~~~~ 109 (153)
T d1id1a_ 71 RCRAILALSD------N-DADNAFVVLSAKDMSSDVKTVLAVSDSK 109 (153)
T ss_dssp TCSEEEECSS------C-HHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred cCCEEEEccc------c-HHHHHHHHHHHHHhCCCCceEEEEcCHH
Confidence 6888875421 1 2233444455667788888887766553
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.07 E-value=0.38 Score=40.31 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=39.6
Q ss_pred eEEEECcCcccccccccCCCCCeeEEEecccc----ccc--CCC-HHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAM----HYS--WST-EARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 144 ~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l----~~~--~~~-~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
-.|+++|+.+.- ..+ +++++|+|++.--. .+. ..+ .+.....+.++.++|||||.+++..
T Consensus 5 ~~~~~~D~le~l--~~l-~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 5 HVYDVCDCLDTL--AKL-PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEEECCHHHHH--HTS-CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEechHHHHH--hhC-cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 456788987642 112 67999999996421 110 000 1446778899999999999988754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=83.95 E-value=0.17 Score=40.21 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=34.8
Q ss_pred CCCEEEEecCCccc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhc
Q 017369 84 RGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 84 ~~~~VLDlGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
+..+||=||+|.-+ .+...+..-.+.|+.+|+++..+++.+....
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG 73 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence 56899999999754 4444444556699999999999988887654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.17 E-value=2.6 Score=32.89 Aligned_cols=96 Identities=8% Similarity=-0.061 Sum_probs=58.9
Q ss_pred hCCCC--CEEEEec--CCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 81 YARRG--DVVLDLA--CGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 81 ~~~~~--~~VLDlG--cG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
.++++ .+||=.| .|.|..+..+++. +...|+++..+++....+...... ...+ |..+..
T Consensus 25 ~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga--------------d~vi--~~~~~~ 88 (187)
T d1vj1a2 25 HISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF--------------DAAV--NYKTGN 88 (187)
T ss_dssp CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC--------------SEEE--ETTSSC
T ss_pred CCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc--------------eEEe--eccchh
Confidence 34555 7899877 4678888888885 445688888887666655443321 1122 222222
Q ss_pred ccc---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 156 LDK---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 156 ~~~---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+.+ .. .+..+|+|+-... ...+....++|+|||+++.
T Consensus 89 ~~~~~~~~-~~~GvDvv~D~vG-----------g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 89 VAEQLREA-CPGGVDVYFDNVG-----------GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp HHHHHHHH-CTTCEEEEEESSC-----------HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHH-hccCceEEEecCC-----------chhHHHHhhhccccccEEE
Confidence 111 11 2356999975432 1356888999999999874
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=82.79 E-value=0.88 Score=35.26 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=59.9
Q ss_pred CCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.+++.+||=-|+ |-|..+..+++....+|+++.-|++-.+.+++.... ..+...|...... .
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad--------------~vi~~~~~~~~~~-~- 84 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS--------------EVISREDVYDGTL-K- 84 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS--------------EEEEHHHHCSSCC-C-
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc--------------ceEeccchhchhh-h-
Confidence 345667887664 345677777776566899999999888888776431 1111111110000 0
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
....+.+|+|+-...= ..+.+..+.|+|+|+++..
T Consensus 85 ~~~~~gvd~vid~vgg-----------~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 85 ALSKQQWQGAVDPVGG-----------KQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp SSCCCCEEEEEESCCT-----------HHHHHHHTTEEEEEEEEEC
T ss_pred cccCCCceEEEecCcH-----------HHHHHHHHHhccCceEEEe
Confidence 0134679998754321 4668889999999998753
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.45 E-value=2.4 Score=34.84 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=55.6
Q ss_pred CCCEEEEecCCccc---cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc---
Q 017369 84 RGDVVLDLACGKGG---DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (372)
Q Consensus 84 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--- 157 (372)
.|.+||=-|++.|. .+..+++.+ .+|+.+|.+++.++...+.+... ..++..+.+|+.+..--
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~~~~~----------~~~~~~~~~Dvs~~~~v~~~ 74 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGL----------GAKVHTFVVDCSNREDIYSS 74 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHT----------TCCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhc----------CCcEEEEEeeCCCHHHHHHH
Confidence 57788888998874 344444444 48999999999998887776532 34688899999875321
Q ss_pred --cccCCCCCeeEEEeccccc
Q 017369 158 --KVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l~ 176 (372)
......+..|+++.+..+.
T Consensus 75 ~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 75 AKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHcCCCceeEeecccc
Confidence 1111346799988876544
|