Citrus Sinensis ID: 017460
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LEB2 | 381 | Alcohol dehydrogenase-lik | yes | no | 0.997 | 0.971 | 0.740 | 1e-170 | |
| P14675 | 380 | Alcohol dehydrogenase 3 O | N/A | no | 0.989 | 0.965 | 0.539 | 1e-115 | |
| P14674 | 380 | Alcohol dehydrogenase 2 O | N/A | no | 0.989 | 0.965 | 0.539 | 1e-115 | |
| P14673 | 380 | Alcohol dehydrogenase 1 O | N/A | no | 0.989 | 0.965 | 0.536 | 1e-114 | |
| P25141 | 382 | Alcohol dehydrogenase 1 O | N/A | no | 0.973 | 0.945 | 0.546 | 1e-114 | |
| P14219 | 379 | Alcohol dehydrogenase 1 O | N/A | no | 0.973 | 0.952 | 0.540 | 1e-113 | |
| P00333 | 379 | Alcohol dehydrogenase 1 O | N/A | no | 0.973 | 0.952 | 0.534 | 1e-113 | |
| P28032 | 380 | Alcohol dehydrogenase 2 O | N/A | no | 0.989 | 0.965 | 0.528 | 1e-113 | |
| Q2R8Z5 | 379 | Alcohol dehydrogenase 1 O | no | no | 0.973 | 0.952 | 0.534 | 1e-112 | |
| Q75ZX4 | 379 | Alcohol dehydrogenase 1 O | N/A | no | 0.973 | 0.952 | 0.534 | 1e-112 |
| >sp|Q8LEB2|ADHL6_ARATH Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 597 bits (1539), Expect = e-170, Method: Compositional matrix adjust.
Identities = 279/377 (74%), Positives = 330/377 (87%), Gaps = 7/377 (1%)
Query: 2 STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ- 60
S+S +QPQVITC AAVAW AG+PLV+EEVEV+PPQP EIRIKVVCTSLCRSD++AWE+Q
Sbjct: 5 SSSFEQPQVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQS 64
Query: 61 ------WPQCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 114
+ IVES+G GVTEF +G+HVL VF GEC +CR C S KSN C+VLG+ER+
Sbjct: 65 LLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERK 124
Query: 115 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG 174
G+MHSDQ+TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV +APL KICLLSCG++AG
Sbjct: 125 GLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAG 184
Query: 175 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234
LGAAWNVAD+ KGS+VVIFGLGTVGLSVAQGAK RGA++I+GVD NP K E+AK FGVT+
Sbjct: 185 LGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTD 244
Query: 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP 294
F+N ND +EP+ QVIKR+T GGAD+SFEC+GDTG+ TTALQSC DGWG+ VTLGVPK KP
Sbjct: 245 FINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKP 304
Query: 295 EVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAF 354
EV+AHYGLFLSG++LKG+LFGGWKPK+DLPSL+++Y+ KE M+DEFITHNL F++IN+AF
Sbjct: 305 EVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAF 364
Query: 355 NLMKEGKCLRSVIHMPK 371
LM+EGKCLR V+HMPK
Sbjct: 365 VLMREGKCLRCVLHMPK 381
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1 |
| >sp|P14675|ADH3_SOLTU Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/380 (53%), Positives = 272/380 (71%), Gaps = 13/380 (3%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
MST++ Q VI CKAAVAW AG+PLV+EEV+V PPQ E+R+K++ TSLC +D+ WE +
Sbjct: 1 MSTTVGQ--VIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAK 58
Query: 61 -----WP-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 110
+P + IVESVG GVTE G+HVL VF GECK C CKS++SN C +L
Sbjct: 59 GQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLR 118
Query: 111 LER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC 169
+ RGVM +D Q+RFSI GKP+YH+ S+FSEYTVVH GC K++ +APL+K+C+LSC
Sbjct: 119 INTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178
Query: 170 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229
G+S GLGA NVA +KGS+V IFGLG VGL+ A+GA+ GASRIIGVD N + E+AK
Sbjct: 179 GISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKK 238
Query: 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289
FGVTEF+NP D ++PVQ+VI +TDGG D S EC G + +A + DGWG+AV +GV
Sbjct: 239 FGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGV 298
Query: 290 PKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFED 349
P + H FL+ RTLKG+ FG +KP++D+PS+V +Y+ KE +++FITH L F +
Sbjct: 299 PHKEAVFKTHPMNFLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAE 358
Query: 350 INQAFNLMKEGKCLRSVIHM 369
IN+AF+LM +G+ LR +I M
Sbjct: 359 INKAFDLMLKGEGLRCIITM 378
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Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P14674|ADH2_SOLTU Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/380 (53%), Positives = 271/380 (71%), Gaps = 13/380 (3%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
MST+ Q VI CKAAVAW AG+PLV+EEV+V PPQ E+R+K++ TSLC +D+ WE +
Sbjct: 1 MSTTTGQ--VIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAK 58
Query: 61 -----WP-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 110
+P + IVESVG GVTE G+HVL VF GECK C CKS++SN C +L
Sbjct: 59 GQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLR 118
Query: 111 LER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC 169
+ RGVM +D Q+RFSI GKP+YH+ S+FSEYTVVH GC K++ +APL+K+C+LSC
Sbjct: 119 INTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178
Query: 170 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229
G+S GLGA NVA +KGS+V IFGLG VGL+ A+GA+ GASRIIGVD N + E+AK
Sbjct: 179 GISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKK 238
Query: 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289
FGVTEF+NP D ++PVQ+VI +TDGG D S EC G + +A + DGWG+AV +GV
Sbjct: 239 FGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGV 298
Query: 290 PKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFED 349
P + H FL+ RTLKG+ FG +KP++D+PS+V +Y+ KE +++FITH L F +
Sbjct: 299 PHKEAVFKTHPMNFLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAE 358
Query: 350 INQAFNLMKEGKCLRSVIHM 369
IN+AF+LM +G+ LR +I M
Sbjct: 359 INKAFDLMLKGEGLRCIITM 378
|
Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P14673|ADH1_SOLTU Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/380 (53%), Positives = 271/380 (71%), Gaps = 13/380 (3%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
MST++ Q VI CKAAVAW AG+PLV+EEV+V PPQ E+R+K++ TSLC +D+ WE +
Sbjct: 1 MSTTVGQ--VIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAK 58
Query: 61 -----WP-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 110
+P + IVESVG GVTE G+HVL VF GECK C CKS++SN C +L
Sbjct: 59 GQNPVFPRILGHEAAGIVESVGEGVTELGPGDHVLPVFTGECKDCAHCKSEESNMCSLLR 118
Query: 111 LER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC 169
+ RGVM +D Q+RFSI GKP+YH+ S+FSEYTVVH GC K++ +APL+K+C+LSC
Sbjct: 119 INTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178
Query: 170 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229
G+S GLGA NVA +KGS+V IFGLG VGL+ A+GA+ GASRIIGVD N + E+AK
Sbjct: 179 GISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKK 238
Query: 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289
FGVTEF+NP D ++PVQ+VI +TDGG D S EC G + +A + DGWG+AV +GV
Sbjct: 239 FGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGV 298
Query: 290 PKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFED 349
P + H L+ RTLKG+ FG +KP++D+PS+V +Y+ KE +++FITH L F +
Sbjct: 299 PHKEAVFKTHPMNLLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAE 358
Query: 350 INQAFNLMKEGKCLRSVIHM 369
IN+AF+LM +G+ LR +I M
Sbjct: 359 INKAFDLMLKGEGLRCIITM 378
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Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P25141|ADH1_PETHY Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/373 (54%), Positives = 264/373 (70%), Gaps = 12/373 (3%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET--QWPQCCR 66
QVI CKAAVAW AG+PLV+EEVEV PPQ E+R+K++ TSLC +D+ WE Q P R
Sbjct: 8 QVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRLKILFTSLCHTDVYFWEAKGQTPLFPR 67
Query: 67 I--------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVM 117
I VESVG GVT+ G+HVL VF GEC+ CR CKS++SN C++L + RGVM
Sbjct: 68 IFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECQQCRHCKSEESNMCDLLRINTDRGVM 127
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
D QTRFS GKP+YH+ S+FSEYTV HSGC K+ APL+K+C+LSCG+S GLGA
Sbjct: 128 IHDGQTRFSKDGKPIYHFVGTSTFSEYTVCHSGCVTKIDPQAPLDKVCVLSCGISTGLGA 187
Query: 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
NVA +KGSTV IFGLG VGL+ A+GA+ GASRIIGVD NP + AK FGVTEF+N
Sbjct: 188 TLNVAKPTKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFNDAKKFGVTEFVN 247
Query: 238 PNDN-NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEV 296
P D+ ++PVQQVI +TDGG D S EC G+ + +A + DGWG+AV +GVP
Sbjct: 248 PKDHGDKPVQQVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPNKDDAF 307
Query: 297 AAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNL 356
H L+ RTLKG+ FG +KPK+D+PS+V++Y+KKE +++FITH + F +IN+AF+
Sbjct: 308 KTHPMNLLNERTLKGTFFGNYKPKSDIPSVVDKYMKKELELEKFITHQVPFSEINKAFDY 367
Query: 357 MKEGKCLRSVIHM 369
M +G+ +R +I M
Sbjct: 368 MLKGESIRCMITM 380
|
This protein is responsible for the conversion of alcohols to aldehydes in plants and is important for NAD metabolism during anaerobic respiration. Petunia hybrida (taxid: 4102) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P14219|ADH1_PENAM Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/372 (54%), Positives = 265/372 (71%), Gaps = 11/372 (2%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET--QWPQCCR 66
+VI CKAAVAW AG+PL +EEVEV PPQ E+R+K++ TSLC +D+ WE Q P R
Sbjct: 6 KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTSLCHTDVYFWEAKGQTPVFPR 65
Query: 67 I--------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
I +ESVG GVT+ G+HVL VF GECK C CKS +SN C++L + RGVM
Sbjct: 66 IFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTVRGVM 125
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
D ++RFSI GKP+YH+ S+FSEYTV+H GC K++ APL+K+C+LSCG+S GLGA
Sbjct: 126 IGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGISTGLGA 185
Query: 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
+ NVA KGSTV IFGLG VGL+ A+GA+ GASRIIGVD NP + E+AK FG TEF+N
Sbjct: 186 SINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGCTEFVN 245
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D+N+PVQ+V+ +T+GG D S EC G+ + A + DGWG+AV +GVP E
Sbjct: 246 PKDHNKPVQEVLADMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFK 305
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
H FL+ RTLKG+ FG +KP+TDLP++V Y+KKE V++FITH++ F +IN+AF+LM
Sbjct: 306 THPMNFLNERTLKGTFFGNFKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINKAFDLM 365
Query: 358 KEGKCLRSVIHM 369
+G+ +R +I M
Sbjct: 366 AKGEGIRCIIRM 377
|
Pennisetum americanum (taxid: 4543) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/372 (53%), Positives = 265/372 (71%), Gaps = 11/372 (2%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET--QWPQCCR 66
+VI CKAAVAW AG+PL +EEVEV PPQ E+R+K++ TSLC +D+ WE Q P R
Sbjct: 6 KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPR 65
Query: 67 I--------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
I +ESVG GVT+ G+HVL VF GECK C CKS +SN C++L + RGVM
Sbjct: 66 IFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVM 125
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
+D ++RFSI GKP+YH+ S+FSEYTV+H GC K++ APL+K+C+LSCG S GLGA
Sbjct: 126 IADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYSTGLGA 185
Query: 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
+ NVA KGSTV +FGLG VGL+ A+GA+ GASRIIGVD NP + E+A+ FG TEF+N
Sbjct: 186 SINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEARKFGCTEFVN 245
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D+N+PVQ+V+ +T+GG D S EC G+ + A + DGWG+AV +GVP E
Sbjct: 246 PKDHNKPVQEVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFK 305
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
H FL+ RTLKG+ FG +KP+TDLP++V Y+KKE V++FITH++ F +IN+AF+LM
Sbjct: 306 THPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKAFDLM 365
Query: 358 KEGKCLRSVIHM 369
+G+ +R +I M
Sbjct: 366 AKGEGIRCIIRM 377
|
Zea mays (taxid: 4577) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P28032|ADH2_SOLLC Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/380 (52%), Positives = 271/380 (71%), Gaps = 13/380 (3%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
MST++ Q VI CKAAVAW AG+PLV+EEV+V PPQ E+R+K++ TSLC +D+ WE +
Sbjct: 1 MSTTVGQ--VIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAK 58
Query: 61 -----WP-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 110
+P + IVESVG GVT+ G+HVL VF GECK C CKS++SN C +L
Sbjct: 59 GQNPVFPRILGHEAAGIVESVGEGVTDLAPGDHVLPVFTGECKDCAHCKSEESNMCSLLR 118
Query: 111 LER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC 169
+ RGVM +D ++RFSI G P+YH+ S+FSEYTVVH GC K++ +APL+K+C+LSC
Sbjct: 119 INTDRGVMLNDGKSRFSINGNPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178
Query: 170 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229
G+S GLGA+ NVA +KGS+V IFGLG VGL+ A+GA+ GASRIIGVD N + E+AK
Sbjct: 179 GISTGLGASLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKK 238
Query: 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289
FGVTEF+NP D ++PVQ+VI +TDGG D S EC G + +A + DGWG+AV +GV
Sbjct: 239 FGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGV 298
Query: 290 PKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFED 349
P + H FL+ RTLKG+ FG +KP++D+P +V +Y+ KE +++FITH L F +
Sbjct: 299 PHKEAVFKTHPLNFLNERTLKGTFFGNYKPRSDIPCVVEKYMNKELELEKFITHTLPFAE 358
Query: 350 INQAFNLMKEGKCLRSVIHM 369
IN+AF+LM +G+ LR +I M
Sbjct: 359 INKAFDLMLKGEGLRCIITM 378
|
Solanum lycopersicum (taxid: 4081) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q2R8Z5|ADH1_ORYSJ Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/372 (53%), Positives = 262/372 (70%), Gaps = 11/372 (2%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET--QWPQCCR 66
+VI CKAAVAW A +PLV+EEVEV PPQ E+R+K++ TSLC +D+ WE Q P R
Sbjct: 6 KVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPR 65
Query: 67 I--------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
I VESVG GVT+ G+HVL VF GECK C CKS +SN C++L + RGVM
Sbjct: 66 IFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVM 125
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
D ++RFSI GKP+YH+ S+FSEYTV+H GC K++ APL+K+C+LSCG+S GLGA
Sbjct: 126 IGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGA 185
Query: 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
NVA KGSTV IFGLG VGL+ A+GA+ GASRIIG+D N + E+A+ FG TEF+N
Sbjct: 186 TINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVN 245
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D+++PVQQV+ +T+GG D S EC G+ + A + DGWG+AV +GVP E
Sbjct: 246 PKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFK 305
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
H FL+ RTLKG+ FG +KP+TDLP++V Y+KKE V++FITH++ F +IN AF+LM
Sbjct: 306 THPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLM 365
Query: 358 KEGKCLRSVIHM 369
+G+ +R +I M
Sbjct: 366 HKGEGIRCIIRM 377
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q75ZX4|ADH1_ORYSI Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/372 (53%), Positives = 262/372 (70%), Gaps = 11/372 (2%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET--QWPQCCR 66
+VI CKAAVAW A +PLV+EEVEV PPQ E+R+K++ TSLC +D+ WE Q P R
Sbjct: 6 KVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPR 65
Query: 67 I--------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
I VESVG GVT+ G+HVL VF GECK C CKS +SN C++L + RGVM
Sbjct: 66 IFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVM 125
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
D ++RFSI GKP+YH+ S+FSEYTV+H GC K++ APL+K+C+LSCG+S GLGA
Sbjct: 126 IGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGA 185
Query: 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
NVA KGSTV IFGLG VGL+ A+GA+ GASRIIG+D N + E+A+ FG TEF+N
Sbjct: 186 TINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVN 245
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D+++PVQQV+ +T+GG D S EC G+ + A + DGWG+AV +GVP E
Sbjct: 246 PKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFK 305
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
H FL+ RTLKG+ FG +KP+TDLP++V Y+KKE V++FITH++ F +IN AF+LM
Sbjct: 306 THPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLM 365
Query: 358 KEGKCLRSVIHM 369
+G+ +R +I M
Sbjct: 366 HKGEGIRCIIRM 377
|
Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | ||||||
| 224078958 | 378 | predicted protein [Populus trichocarpa] | 1.0 | 0.981 | 0.822 | 0.0 | |
| 225454573 | 379 | PREDICTED: alcohol dehydrogenase-like 6 | 0.994 | 0.973 | 0.785 | 1e-174 | |
| 359489892 | 383 | PREDICTED: alcohol dehydrogenase-like 6 | 0.997 | 0.966 | 0.774 | 1e-173 | |
| 356531015 | 374 | PREDICTED: alcohol dehydrogenase-like 6- | 0.989 | 0.981 | 0.780 | 1e-173 | |
| 449515985 | 379 | PREDICTED: alcohol dehydrogenase-like 6- | 0.978 | 0.957 | 0.783 | 1e-172 | |
| 449469452 | 379 | PREDICTED: alcohol dehydrogenase-like 6- | 0.978 | 0.957 | 0.781 | 1e-171 | |
| 357498987 | 377 | Alcohol dehydrogenase [Medicago truncatu | 0.991 | 0.976 | 0.765 | 1e-168 | |
| 18420834 | 381 | alcohol dehydrogenase-like 6 [Arabidopsi | 0.997 | 0.971 | 0.740 | 1e-168 | |
| 297812675 | 382 | hypothetical protein ARALYDRAFT_489336 [ | 0.989 | 0.960 | 0.735 | 1e-167 | |
| 21553654 | 381 | alcohol dehydrogenase-like protein [Arab | 0.997 | 0.971 | 0.734 | 1e-166 |
| >gi|224078958|ref|XP_002305695.1| predicted protein [Populus trichocarpa] gi|222848659|gb|EEE86206.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/378 (82%), Positives = 342/378 (90%), Gaps = 7/378 (1%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
MS+SIKQP VITCKAAVAWGAG+ LV++EVEV+PP P+EIRIKVV TSLCRSDI+A ++
Sbjct: 1 MSSSIKQPNVITCKAAVAWGAGEALVMQEVEVSPPHPQEIRIKVVTTSLCRSDISALDSH 60
Query: 61 --WP-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER 113
+P + IVES+G GVTEF EG+HVLTVF GECKTCRQC S KSN C+VLGLER
Sbjct: 61 AIFPRIFGHEASGIVESIGEGVTEFQEGDHVLTVFTGECKTCRQCMSGKSNMCQVLGLER 120
Query: 114 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA 173
RGVMHSDQ TRFSI GKPVYHYCAVSSFSEYTVVH+GCAVKVSS APLEKICLLSCGL+A
Sbjct: 121 RGVMHSDQGTRFSINGKPVYHYCAVSSFSEYTVVHTGCAVKVSSAAPLEKICLLSCGLAA 180
Query: 174 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGA+ RGAS+IIGVDTNPEKC+KAK FG+T
Sbjct: 181 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGARIRGASQIIGVDTNPEKCDKAKDFGIT 240
Query: 234 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK 293
EF+NPND NEP+QQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGL VTLGVPK+K
Sbjct: 241 EFINPNDCNEPIQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLTVTLGVPKVK 300
Query: 294 PEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQA 353
PEV+AHYGLFLSGRTLKGSLFGGWKPK+DLPSLV+ Y+ KE +DEFITHNL FE+IN+A
Sbjct: 301 PEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDMYMNKEIQIDEFITHNLPFEEINKA 360
Query: 354 FNLMKEGKCLRSVIHMPK 371
F LM+EGKCLR VIHMPK
Sbjct: 361 FELMREGKCLRCVIHMPK 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454573|ref|XP_002263525.1| PREDICTED: alcohol dehydrogenase-like 6 isoform 1 [Vitis vinifera] gi|297737206|emb|CBI26407.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/378 (78%), Positives = 336/378 (88%), Gaps = 9/378 (2%)
Query: 2 STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW 61
S+SIK P VITC+AAV +GAG+ LV+EEVEV+PPQP EIRIKVV TSLCRSDITAW +Q
Sbjct: 3 SSSIKTPNVITCRAAVGYGAGEALVIEEVEVSPPQPMEIRIKVVSTSLCRSDITAW-SQA 61
Query: 62 PQCCRI--------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER 113
P RI VESVG GVTEF EG+HVLT+F GEC TCR C S KSN C+VLGLER
Sbjct: 62 PIFPRIFGHEASGIVESVGEGVTEFEEGDHVLTLFTGECMTCRHCTSGKSNMCQVLGLER 121
Query: 114 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA 173
+GVMHSDQ+TRFSIKGKP+YHYCAVSSFSEYTVVHSGCA+KVSS+APL+KICLLSCG+SA
Sbjct: 122 KGVMHSDQKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCALKVSSLAPLDKICLLSCGVSA 181
Query: 174 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
GLGAAW VA+I++GSTVVIFGLGTVGLSVAQGAK RGASRIIGVD N EK EKAKAFG+T
Sbjct: 182 GLGAAWKVANITEGSTVVIFGLGTVGLSVAQGAKQRGASRIIGVDINSEKMEKAKAFGIT 241
Query: 234 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK 293
EF+NP+D NEPVQQVIK++TDGGADYSFECIGDTGM+TTALQSCCDGWGL VTLGVPK+
Sbjct: 242 EFVNPHDCNEPVQQVIKQMTDGGADYSFECIGDTGMVTTALQSCCDGWGLTVTLGVPKVN 301
Query: 294 PEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQA 353
PE+++HYGLFLSGRTL+GSLFGGW+PK+DL SLV+ Y++KE +DEFITHNL FEDIN+A
Sbjct: 302 PEISSHYGLFLSGRTLRGSLFGGWRPKSDLHSLVDMYMRKEIQIDEFITHNLPFEDINKA 361
Query: 354 FNLMKEGKCLRSVIHMPK 371
F+LM EGKCLR VIHMPK
Sbjct: 362 FDLMMEGKCLRCVIHMPK 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489892|ref|XP_003633990.1| PREDICTED: alcohol dehydrogenase-like 6 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 295/381 (77%), Positives = 335/381 (87%), Gaps = 11/381 (2%)
Query: 2 STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ- 60
S+SIK P VITC+AAV +GAG+ LV+EEVEV+PPQP EIRIKVV TSLCRSDITAW
Sbjct: 3 SSSIKTPNVITCRAAVGYGAGEALVIEEVEVSPPQPMEIRIKVVSTSLCRSDITAWSQVN 62
Query: 61 -----WP-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 110
+P + IVESVG GVTEF EG+HVLT+F GEC TCR C S KSN C+VLG
Sbjct: 63 SSPHIFPRIFGHEASGIVESVGEGVTEFEEGDHVLTLFTGECMTCRHCTSGKSNMCQVLG 122
Query: 111 LERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCG 170
LER+GVMHSDQ+TRFSIKGKP+YHYCAVSSFSEYTVVHSGCA+KVSS+APL+KICLLSCG
Sbjct: 123 LERKGVMHSDQKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCALKVSSLAPLDKICLLSCG 182
Query: 171 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230
+SAGLGAAW VA+I++GSTVVIFGLGTVGLSVAQGAK RGASRIIGVD N EK EKAKAF
Sbjct: 183 VSAGLGAAWKVANITEGSTVVIFGLGTVGLSVAQGAKQRGASRIIGVDINSEKMEKAKAF 242
Query: 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290
G+TEF+NP+D NEPVQQVIK++TDGGADYSFECIGDTGM+TTALQSCCDGWGL VTLGVP
Sbjct: 243 GITEFVNPHDCNEPVQQVIKQMTDGGADYSFECIGDTGMVTTALQSCCDGWGLTVTLGVP 302
Query: 291 KLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDI 350
K+ PE+++HYGLFLSGRTL+GSLFGGW+PK+DL SLV+ Y++KE +DEFITHNL FEDI
Sbjct: 303 KVNPEISSHYGLFLSGRTLRGSLFGGWRPKSDLHSLVDMYMRKEIQIDEFITHNLPFEDI 362
Query: 351 NQAFNLMKEGKCLRSVIHMPK 371
N+AF+LM EGKCLR VIHMPK
Sbjct: 363 NKAFDLMMEGKCLRCVIHMPK 383
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531015|ref|XP_003534074.1| PREDICTED: alcohol dehydrogenase-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/374 (78%), Positives = 331/374 (88%), Gaps = 7/374 (1%)
Query: 5 IKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--WP 62
+ PQVITCKAAVAW AG+ LV+EEVEV+PPQP EIRIKVV TSLCRSD++AWE+ +P
Sbjct: 1 MSSPQVITCKAAVAWRAGEALVMEEVEVSPPQPMEIRIKVVSTSLCRSDLSAWESHAIFP 60
Query: 63 -----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 117
+ IVESVG GVTEF EG+HVLTVFIGEC +CRQC S KSNTC++LGLERRG+M
Sbjct: 61 RIFGHEASGIVESVGQGVTEFKEGDHVLTVFIGECMSCRQCTSGKSNTCQILGLERRGLM 120
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
HSDQ+TRFS+KGKPVYHYCAVSSFSEYTVVHSGCAVKVS +APLEKICLLSCG++AGLGA
Sbjct: 121 HSDQKTRFSLKGKPVYHYCAVSSFSEYTVVHSGCAVKVSPLAPLEKICLLSCGVAAGLGA 180
Query: 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
AWNVAD+SKGSTVVIFGLGTVGLSVAQ +K RGASRIIGVD NP+KCE AKAFGVTE ++
Sbjct: 181 AWNVADVSKGSTVVIFGLGTVGLSVAQASKLRGASRIIGVDNNPQKCENAKAFGVTEVVD 240
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
PN EP+ QVIKRITDGGAD+SFEC+GDT ITTALQSCCDGWGL VTLGVPK+KPE++
Sbjct: 241 PNSYKEPIAQVIKRITDGGADFSFECVGDTDTITTALQSCCDGWGLTVTLGVPKVKPEMS 300
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
AHYGL L GRTLKGSLFGGWKPK+DLPSLV +YL KE +D++ITHNL F+DIN+AFNLM
Sbjct: 301 AHYGLLLMGRTLKGSLFGGWKPKSDLPSLVEKYLNKEIQIDDYITHNLSFDDINKAFNLM 360
Query: 358 KEGKCLRSVIHMPK 371
KEG+CLR VIHMP+
Sbjct: 361 KEGECLRCVIHMPR 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515985|ref|XP_004165028.1| PREDICTED: alcohol dehydrogenase-like 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 290/370 (78%), Positives = 326/370 (88%), Gaps = 7/370 (1%)
Query: 8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--WP--- 62
P V+TCKAAVAWG GQPLV+EEVEV+PPQP EIR+KVV TSLCRSD++AWETQ +P
Sbjct: 9 PAVLTCKAAVAWGPGQPLVIEEVEVSPPQPMEIRVKVVSTSLCRSDLSAWETQAIFPRIF 68
Query: 63 --QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
+ +VESVGPGVTEF+EG+HVLT+F GECKTCR C S KSN C+VLGLERRGVMHSD
Sbjct: 69 GHEASGVVESVGPGVTEFSEGDHVLTLFTGECKTCRHCTSGKSNMCQVLGLERRGVMHSD 128
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180
Q+TRFSIKGKP+YHYCAVSSFSEYTVVHSGCAVKVS PLEKICLLSCG++AGLGAAWN
Sbjct: 129 QKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCAVKVSLAVPLEKICLLSCGVAAGLGAAWN 188
Query: 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240
VADIS+GSTVVI+GLGTVGLSVAQGAK RGAS+IIGVD NPEK E AK FG+T F+NP +
Sbjct: 189 VADISEGSTVVIYGLGTVGLSVAQGAKVRGASQIIGVDINPEKSEIAKTFGITHFVNPKE 248
Query: 241 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY 300
+E +QQVI RITDGGADY+FECIGDTGMITTALQSCC GWGL VTLGVPK+ PE+ AHY
Sbjct: 249 CSESIQQVINRITDGGADYAFECIGDTGMITTALQSCCQGWGLTVTLGVPKVNPELTAHY 308
Query: 301 GLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEG 360
G+ LSGRTL+GSLFGGWKPK+DLPSLV+ Y KKE +DE+ITHN+ FEDINQAF LMKEG
Sbjct: 309 GILLSGRTLRGSLFGGWKPKSDLPSLVDMYTKKEIQIDEYITHNISFEDINQAFTLMKEG 368
Query: 361 KCLRSVIHMP 370
KCLR VIH+P
Sbjct: 369 KCLRCVIHLP 378
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469452|ref|XP_004152434.1| PREDICTED: alcohol dehydrogenase-like 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/370 (78%), Positives = 326/370 (88%), Gaps = 7/370 (1%)
Query: 8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--WP--- 62
P V+TCKAAVAWG GQPLV+EEVEV+PPQP EIR+KVV TSLCRSD++AWETQ +P
Sbjct: 9 PAVLTCKAAVAWGPGQPLVIEEVEVSPPQPMEIRVKVVSTSLCRSDLSAWETQAIFPRIF 68
Query: 63 --QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
+ +VESVGPGVTEF+EG+HVLT+F GECKTCR C S KSN C+VLGLER+GVMHSD
Sbjct: 69 GHEASGVVESVGPGVTEFSEGDHVLTLFTGECKTCRHCTSGKSNMCQVLGLERKGVMHSD 128
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180
Q+TRFSIKGKP+YHYCAVSSFSEYTVVHSGCAVKVS PLEKICLLSCG++AGLGAAWN
Sbjct: 129 QKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCAVKVSLAVPLEKICLLSCGVAAGLGAAWN 188
Query: 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240
VADIS+GSTVVI+GLGTVGLSVAQGAK RGAS+IIGVD NPEK E AK FG+T F+NP +
Sbjct: 189 VADISEGSTVVIYGLGTVGLSVAQGAKVRGASKIIGVDINPEKSEIAKTFGITHFVNPKE 248
Query: 241 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY 300
+E +QQVI RITDGGADY+FECIGDTGMITTALQSCC GWGL VTLGVPK+ PE+ AHY
Sbjct: 249 CSESIQQVINRITDGGADYAFECIGDTGMITTALQSCCQGWGLTVTLGVPKVNPELTAHY 308
Query: 301 GLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEG 360
G+ LSGRTL+GSLFGGWKPK+DLPSLV+ Y KKE +DE+ITHN+ FEDINQAF LMKEG
Sbjct: 309 GILLSGRTLRGSLFGGWKPKSDLPSLVDMYTKKEIQIDEYITHNISFEDINQAFTLMKEG 368
Query: 361 KCLRSVIHMP 370
KCLR VIH+P
Sbjct: 369 KCLRCVIHLP 378
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357498987|ref|XP_003619782.1| Alcohol dehydrogenase [Medicago truncatula] gi|355494797|gb|AES76000.1| Alcohol dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 287/375 (76%), Positives = 328/375 (87%), Gaps = 7/375 (1%)
Query: 4 SIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--W 61
S PQVITCKAAVAWGAG+ LV+EEVEV+PPQP EIRIKVV TSLCRSD++AWET +
Sbjct: 3 SSSTPQVITCKAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWETHAIF 62
Query: 62 P-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV 116
P + IVESVG GVTEF EG+ VLTVFIGEC +C+ CKS K+N C+VLGLER+G+
Sbjct: 63 PRIFGHEASGIVESVGLGVTEFKEGDQVLTVFIGECMSCKLCKSGKTNICQVLGLERKGL 122
Query: 117 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 176
MHSDQ+TRF++KGKPVYHYC VSSFSEYTVVHSGCAVKVS PLEKIC+LSCG+SAGLG
Sbjct: 123 MHSDQKTRFTVKGKPVYHYCGVSSFSEYTVVHSGCAVKVSPHVPLEKICILSCGVSAGLG 182
Query: 177 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
AAWNVAD+SKGSTVVIFGLGTVGLSVAQGAK RGASRIIGVD NP+KCE AK+FG+TE +
Sbjct: 183 AAWNVADVSKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCENAKSFGITEVV 242
Query: 237 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEV 296
+P+ EP+ QVIKRITDGGAD+ FEC GDT MITTALQSCCDGWGL VTLGVPK+KPE+
Sbjct: 243 DPSLYKEPIAQVIKRITDGGADFCFECAGDTDMITTALQSCCDGWGLTVTLGVPKVKPEM 302
Query: 297 AAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNL 356
+AHYGLFL+GRTLKGSLFGGWKPKTDLPSLV +Y+ KE +D++ITHNL F++IN+AFNL
Sbjct: 303 SAHYGLFLTGRTLKGSLFGGWKPKTDLPSLVEKYVNKEIQIDDYITHNLSFDEINKAFNL 362
Query: 357 MKEGKCLRSVIHMPK 371
MKEGKCLR VIHM +
Sbjct: 363 MKEGKCLRCVIHMSR 377
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18420834|ref|NP_568453.1| alcohol dehydrogenase-like 6 [Arabidopsis thaliana] gi|158563847|sp|Q8LEB2.2|ADHL6_ARATH RecName: Full=Alcohol dehydrogenase-like 6 gi|19310538|gb|AAL85002.1| AT5g24760/T4C12_30 [Arabidopsis thaliana] gi|20334800|gb|AAM16261.1| AT5g24760/T4C12_30 [Arabidopsis thaliana] gi|332005972|gb|AED93355.1| alcohol dehydrogenase-like 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/377 (74%), Positives = 330/377 (87%), Gaps = 7/377 (1%)
Query: 2 STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ- 60
S+S +QPQVITC AAVAW AG+PLV+EEVEV+PPQP EIRIKVVCTSLCRSD++AWE+Q
Sbjct: 5 SSSFEQPQVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQS 64
Query: 61 ------WPQCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 114
+ IVES+G GVTEF +G+HVL VF GEC +CR C S KSN C+VLG+ER+
Sbjct: 65 LLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERK 124
Query: 115 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG 174
G+MHSDQ+TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV +APL KICLLSCG++AG
Sbjct: 125 GLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAG 184
Query: 175 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234
LGAAWNVAD+ KGS+VVIFGLGTVGLSVAQGAK RGA++I+GVD NP K E+AK FGVT+
Sbjct: 185 LGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTD 244
Query: 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP 294
F+N ND +EP+ QVIKR+T GGAD+SFEC+GDTG+ TTALQSC DGWG+ VTLGVPK KP
Sbjct: 245 FINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKP 304
Query: 295 EVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAF 354
EV+AHYGLFLSG++LKG+LFGGWKPK+DLPSL+++Y+ KE M+DEFITHNL F++IN+AF
Sbjct: 305 EVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAF 364
Query: 355 NLMKEGKCLRSVIHMPK 371
LM+EGKCLR V+HMPK
Sbjct: 365 VLMREGKCLRCVLHMPK 381
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297812675|ref|XP_002874221.1| hypothetical protein ARALYDRAFT_489336 [Arabidopsis lyrata subsp. lyrata] gi|297320058|gb|EFH50480.1| hypothetical protein ARALYDRAFT_489336 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 275/374 (73%), Positives = 328/374 (87%), Gaps = 7/374 (1%)
Query: 5 IKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ---- 60
+QPQVITCKAAVAW AG+PLV+EEVEV+PPQP EIRIKVVCTSLCRSD++AWE Q
Sbjct: 9 FEQPQVITCKAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWEAQSLLP 68
Query: 61 ---WPQCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 117
+ IVES+G GVTEF +G+HVL VF GEC +CR C S KSN C+VLG+ER+G+M
Sbjct: 69 RIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLM 128
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
HSDQ+TRF+IKGKPVYHYCAVSSFSEYTVVHSGCAVKV +APL KICLLSCG++AGLGA
Sbjct: 129 HSDQKTRFTIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPVAPLHKICLLSCGVAAGLGA 188
Query: 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
AWNVAD+ KGS+VVIFGLGTVGLSVAQGAK RGA++IIGVD NP K E+AK FGVT+F+N
Sbjct: 189 AWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQIIGVDINPAKAEQAKTFGVTDFIN 248
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
ND +EP+ QVIKR+T GGAD+SFEC+GDTG+ TTALQSC DGWG+ VTLGVPK+KPEV+
Sbjct: 249 SNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKVKPEVS 308
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
AHYGLFLSG++LKG+LFGGWKPK+DLPSL+ +Y+ KE M+DE +THNL+F++IN+AF+LM
Sbjct: 309 AHYGLFLSGKSLKGTLFGGWKPKSDLPSLIEKYMNKEIMIDELVTHNLVFDEINKAFDLM 368
Query: 358 KEGKCLRSVIHMPK 371
++GKCLR V+HMPK
Sbjct: 369 RDGKCLRCVLHMPK 382
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21553654|gb|AAM62747.1| alcohol dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/377 (73%), Positives = 328/377 (87%), Gaps = 7/377 (1%)
Query: 2 STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ- 60
S+S +QPQVITC AAVAW AG+PLV+EEVEV+PPQP EIRIKVVCTSLCRSD++AWE+Q
Sbjct: 5 SSSFEQPQVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQS 64
Query: 61 ------WPQCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 114
+ IVES+G GVTEF +G+HVL VF GEC +CR C S KSN C+VLG+ER+
Sbjct: 65 LLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERK 124
Query: 115 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG 174
+MHSDQ+TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV +APL KICLLSCG++AG
Sbjct: 125 CLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAG 184
Query: 175 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234
LGAAWNVAD+ KGS+VVIFGLGTVGLSVAQGAK GA++I+GVD NP K E+AK FGVT+
Sbjct: 185 LGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLSGAAQILGVDINPAKAEQAKTFGVTD 244
Query: 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP 294
F+N ND +EP+ QVIKR+T GGAD+SFEC+GDTG+ TTALQSC DGWG+ VTLGVPK KP
Sbjct: 245 FINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKP 304
Query: 295 EVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAF 354
EV+AHYGLFLSG++LKG+LFGGWKPK+DLPSL+++Y+ KE M+DEFITHNL F++IN+AF
Sbjct: 305 EVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAF 364
Query: 355 NLMKEGKCLRSVIHMPK 371
LM+EGKCLR V+HMPK
Sbjct: 365 VLMREGKCLRCVLHMPK 381
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | ||||||
| TAIR|locus:2184575 | 381 | AT5G24760 [Arabidopsis thalian | 0.997 | 0.971 | 0.676 | 2.7e-139 | |
| TAIR|locus:2025237 | 379 | ADH1 "alcohol dehydrogenase 1" | 0.970 | 0.949 | 0.466 | 3.3e-86 | |
| ZFIN|ZDB-GENE-011003-1 | 376 | adh5 "alcohol dehydrogenase 5" | 0.964 | 0.952 | 0.421 | 4.8e-78 | |
| UNIPROTKB|P11766 | 374 | ADH5 "Alcohol dehydrogenase cl | 0.964 | 0.957 | 0.416 | 1.9e-76 | |
| UNIPROTKB|F1S0C1 | 374 | ADH5 "Uncharacterized protein" | 0.970 | 0.962 | 0.419 | 1.9e-76 | |
| UNIPROTKB|Q3ZC42 | 374 | ADH5 "Alcohol dehydrogenase cl | 0.970 | 0.962 | 0.411 | 1e-75 | |
| UNIPROTKB|F1NKS5 | 374 | ADH5 "Uncharacterized protein" | 0.962 | 0.954 | 0.414 | 1.3e-75 | |
| UNIPROTKB|F1NI89 | 370 | ADH5 "Uncharacterized protein" | 0.962 | 0.964 | 0.414 | 1.7e-75 | |
| UNIPROTKB|F1PLM5 | 376 | F1PLM5 "Uncharacterized protei | 0.970 | 0.957 | 0.403 | 1.9e-74 | |
| UNIPROTKB|J9PA83 | 374 | ADH5 "Uncharacterized protein" | 0.970 | 0.962 | 0.403 | 1.9e-74 |
| TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1363 (484.9 bits), Expect = 2.7e-139, P = 2.7e-139
Identities = 255/377 (67%), Positives = 302/377 (80%)
Query: 2 STSIKQPQVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQ- 60
S+S +QPQVITC AAVAW AG+ IRIKVVCTSLCRSD++AWE+Q
Sbjct: 5 SSSFEQPQVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQS 64
Query: 61 -WP-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 114
P + IVES+G GVTEF +G+HVL VF GEC +CR C S KSN C+VLG+ER+
Sbjct: 65 LLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERK 124
Query: 115 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXX 174
G+MHSDQ+TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV +APL KI
Sbjct: 125 GLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAG 184
Query: 175 XXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234
WNVAD+ KGS+VVIFGLGTVGLSVAQGAK RGA++I+GVD NP K E+AK FGVT+
Sbjct: 185 LGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTD 244
Query: 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP 294
F+N ND +EP+ QVIKR+T GGAD+SFEC+GDTG+ TTALQSC DGWG+ VTLGVPK KP
Sbjct: 245 FINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKP 304
Query: 295 EVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAF 354
EV+AHYGLFLSG++LKG+LFGGWKPK+DLPSL+++Y+ KE M+DEFITHNL F++IN+AF
Sbjct: 305 EVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAF 364
Query: 355 NLMKEGKCLRSVIHMPK 371
LM+EGKCLR V+HMPK
Sbjct: 365 VLMREGKCLRCVLHMPK 381
|
|
| TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 174/373 (46%), Positives = 235/373 (63%)
Query: 9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWET--QWPQCCR 66
Q+I CKAAVAW AG+ +RIK++ TSLC +D+ WE Q P R
Sbjct: 6 QIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPLFPR 65
Query: 67 I--------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL--ERRGV 116
I VESVG GVT+ G+HVL +F GEC CR C S++SN C++L + ER G+
Sbjct: 66 IFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTERGGM 125
Query: 117 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXX 176
+H D ++RFSI GKP+YH+ S+FSEYTVVHSG K++ APL+K+
Sbjct: 126 IH-DGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLSTGLG 184
Query: 177 XXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
NVA KG +V IFGLG VGL A+GA+ GASRIIGVD N ++ ++AK FGVTE +
Sbjct: 185 ATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVTECV 244
Query: 237 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEV 296
NP D+++P+QQVI +TDGG D S EC G + A + DGWG+AV +GVP
Sbjct: 245 NPKDHDKPIQQVIAEMTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSKDDAF 304
Query: 297 AAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNL 356
H FL+ RTLKG+ FG +KPKTD+P +V +Y+ KE +++FITH + F +IN+AF+
Sbjct: 305 KTHPMNFLNERTLKGTFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEINKAFDY 364
Query: 357 MKEGKCLRSVIHM 369
M +G+ +R +I M
Sbjct: 365 MLKGESIRCIITM 377
|
|
| ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 156/370 (42%), Positives = 225/370 (60%)
Query: 9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAW-----ETQWP- 62
+VI CKAAVAW AG+ +R+K+ T +C +D E +P
Sbjct: 6 KVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPEGLFPV 65
Query: 63 ----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
+ VESVG GVT+F G+ V+ +++ +C C+ CK+ K+N C+ + + + +G+M
Sbjct: 66 ILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGQGLM 125
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 177
D +RF+ KGK ++H+ S+FSEYTVV KV APL+K+
Sbjct: 126 -PDNTSRFTCKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTGYGA 184
Query: 178 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
N A + GST +FGLG VGL+V G K+ GA+RIIG+D NP+K E AK FG TEF+N
Sbjct: 185 AINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGATEFVN 244
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D+++P+Q+V+ +TDGG DYSFECIG+ G++ AL++C GWG +V +GV E++
Sbjct: 245 PKDHSKPIQEVLVELTDGGVDYSFECIGNVGIMRAALEACHKGWGTSVIIGVAGAGQEIS 304
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
++GRT KG+ FGGWK +P LVN Y+ K+ MVDEF+TH L F IN+AF+LM
Sbjct: 305 TRPFQLVTGRTWKGTAFGGWKSVESVPKLVNDYMNKKLMVDEFVTHTLPFAQINEAFDLM 364
Query: 358 KEGKCLRSVI 367
GK +R+V+
Sbjct: 365 HAGKSIRAVL 374
|
|
| UNIPROTKB|P11766 ADH5 "Alcohol dehydrogenase class-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 154/370 (41%), Positives = 221/370 (59%)
Query: 9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQWPQCC--- 65
+VI CKAAVAW AG+ +RIK++ T++C +D P+ C
Sbjct: 4 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66 -------RIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
IVESVG GVT+ G+ V+ ++I +C C+ C + K+N C+ + + + +G+M
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 123
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 177
D +RF+ KGK + HY S+FSEYTVV K+ +APL+K+
Sbjct: 124 -PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 178 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
N A + GS +FGLG VGL+V G K GASRIIGVD N +K +AK FG TE +N
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN 242
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D ++P+Q+V+ +TDGG DYSFECIG+ ++ AL++C GWG++V +GV E+A
Sbjct: 243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIA 302
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
++GRT KG+ FGGWK +P LV+ Y+ K+ VDEF+THNL F++IN+AF LM
Sbjct: 303 TRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELM 362
Query: 358 KEGKCLRSVI 367
GK +R+V+
Sbjct: 363 HSGKSIRTVV 372
|
|
| UNIPROTKB|F1S0C1 ADH5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 156/372 (41%), Positives = 223/372 (59%)
Query: 9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAW-----ETQWP- 62
QVI CKAAVAW AG+ +RIK++ T++C +D E +P
Sbjct: 4 QVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 63
Query: 63 ----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
+ IVESVG GVT+ G+ V+ ++I +C C+ C + K+N C+ + + + +G+M
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 123
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 177
D +RF+ KGK + HY S+FSEYTVV K+ +APL+K+
Sbjct: 124 -PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGVSTGYGA 182
Query: 178 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
N A + GST +FGLG VGL+V G K GASRIIGVD N +K +AK FG +E +N
Sbjct: 183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGASECIN 242
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D ++P+Q+V+ +TDGG DYSFECIG+ ++ AL++C GWG++V +GV E+A
Sbjct: 243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIA 302
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
++GRT KG+ FGGWK +P LV+ Y+ K+ VDEF+THNL F+ IN+AF LM
Sbjct: 303 TRPFQLVTGRTWKGTAFGGWKSVESIPKLVSEYMSKKIKVDEFVTHNLPFDQINEAFELM 362
Query: 358 KEGKCLRSVIHM 369
GK +R+VI +
Sbjct: 363 HAGKSIRTVIKL 374
|
|
| UNIPROTKB|Q3ZC42 ADH5 "Alcohol dehydrogenase class-3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 153/372 (41%), Positives = 224/372 (60%)
Query: 9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAW-----ETQWP- 62
QVI CKAAVAW AG+ +RIK++ T++C +D E +P
Sbjct: 4 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGNYPV 63
Query: 63 ----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
+ IVESVG GVT+ G+ V+ ++I +C C+ C + K+N C+ + + + +G+M
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 123
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 177
D +RF+ KGK + HY S+FSEYTVV K+ +APL+K+
Sbjct: 124 -PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 178 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
N A + GST +FGLG VGL+V G K GA+RIIGVD N +K +AK FG +E +N
Sbjct: 183 ALNAAKVEPGSTCAVFGLGGVGLAVIMGCKMAGAARIIGVDINKDKFARAKEFGASECIN 242
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D ++P+Q+V+ +TDGG DYSFECIG+ ++ AL++C GWG++V +GV E+A
Sbjct: 243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGISVVVGVAASGEEIA 302
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
++GRT KG+ FGGWK +P LV+ Y+ K+ VDEF+TH+L F+ IN+AF+LM
Sbjct: 303 TRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEAFDLM 362
Query: 358 KEGKCLRSVIHM 369
GK +R+V+ +
Sbjct: 363 HAGKSIRTVVKL 374
|
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| UNIPROTKB|F1NKS5 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 153/369 (41%), Positives = 217/369 (58%)
Query: 10 VITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQWPQCC---- 65
VI CKAAVAW AG+ +RIK+V T+LC +D P+ C
Sbjct: 5 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 64
Query: 66 ------RIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 118
IVESVG GVT+ G+ V+ ++I +C C+ CK+ K+N C+ + + + +G+M
Sbjct: 65 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRVTQGKGLM- 123
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 178
D RF+ KGK +YH+ S+FSEYTVV K+ AP +K+
Sbjct: 124 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 183
Query: 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
N A + GST +FGLG VGL+ G KA GASRIIG+D N KAK FG E ++P
Sbjct: 184 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTYAKAKEFGAAECISP 243
Query: 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA 298
D +P+Q+V+ +TDGG DYSFECIG+ G++ AL++C GWG++V +GV E++
Sbjct: 244 QDFEKPIQEVLVEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEIST 303
Query: 299 HYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK 358
++GRT KG+ FGGWK +P LVN Y+ K+ VDEF+TH L F+ IN+AF+L+
Sbjct: 304 RPFQLVTGRTWKGTAFGGWKSVDSVPKLVNDYMAKKIKVDEFVTHTLPFDKINEAFDLLH 363
Query: 359 EGKCLRSVI 367
+GK +R+V+
Sbjct: 364 KGKSIRTVL 372
|
|
| UNIPROTKB|F1NI89 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 153/369 (41%), Positives = 216/369 (58%)
Query: 10 VITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAWETQWPQCC---- 65
VI CKAAVAW AG+ +RIK+V T+LC +D P+ C
Sbjct: 1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60
Query: 66 ------RIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 118
IVESVG GVT+ G+ V+ ++I +C C+ CK+ K+N C+ + + +G+M
Sbjct: 61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKGLM- 119
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXX 178
D RF+ KGK +YH+ S+FSEYTVV K+ AP +K+
Sbjct: 120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179
Query: 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
N A + GST +FGLG VGL+ G KA GASRIIG+D N KAK FG E ++P
Sbjct: 180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTYAKAKEFGAAECISP 239
Query: 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA 298
D +P+Q+V+ +TDGG DYSFECIG+ G++ AL++C GWG++V +GV E++
Sbjct: 240 QDFEKPIQEVLVEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEIST 299
Query: 299 HYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK 358
++GRT KG+ FGGWK +P LVN Y+ K+ VDEF+TH L F+ IN+AF+L+
Sbjct: 300 RPFQLVTGRTWKGTAFGGWKSVDSVPKLVNDYMAKKIKVDEFVTHTLPFDKINEAFDLLH 359
Query: 359 EGKCLRSVI 367
+GK +R+V+
Sbjct: 360 KGKSIRTVL 368
|
|
| UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 150/372 (40%), Positives = 222/372 (59%)
Query: 9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAW-----ETQWP- 62
QVI CKAAVAW AG+ +RIK++ T++C +D E +P
Sbjct: 6 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 65
Query: 63 ----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
+ IVESVG GVT+ G+ V+ ++I +C C+ C + K+N C+ + + + +G+M
Sbjct: 66 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 125
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 177
D +RF+ KGK + HY S+FSEYTVV K+ +APL+K+
Sbjct: 126 -PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 184
Query: 178 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
N A + GST +FGLG VGL+ G K GASRIIGVD N +K +AK FG +E +N
Sbjct: 185 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECIN 244
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D ++P+Q+V+ +TDGG DYSFECIG+ ++ AL++C GWG++V +GV E+A
Sbjct: 245 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEEIA 304
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
++GR KG+ FGGWK +P LV+ Y+ ++ VDEF+TH+L F+ IN+AF+L+
Sbjct: 305 TRPFQLVTGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAFDLL 364
Query: 358 KEGKCLRSVIHM 369
GK +R+V+ +
Sbjct: 365 HAGKSIRTVVKL 376
|
|
| UNIPROTKB|J9PA83 ADH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 150/372 (40%), Positives = 222/372 (59%)
Query: 9 QVITCKAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSDITAW-----ETQWP- 62
QVI CKAAVAW AG+ +RIK++ T++C +D E +P
Sbjct: 4 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 63
Query: 63 ----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVM 117
+ IVESVG GVT+ G+ V+ ++I +C C+ C + K+N C+ + + + +G+M
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 123
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXX 177
D +RF+ KGK + HY S+FSEYTVV K+ +APL+K+
Sbjct: 124 -PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 178 XWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
N A + GST +FGLG VGL+ G K GASRIIGVD N +K +AK FG +E +N
Sbjct: 183 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECIN 242
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
P D ++P+Q+V+ +TDGG DYSFECIG+ ++ AL++C GWG++V +GV E+A
Sbjct: 243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEEIA 302
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
++GR KG+ FGGWK +P LV+ Y+ ++ VDEF+TH+L F+ IN+AF+L+
Sbjct: 303 TRPFQLVTGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAFDLL 362
Query: 358 KEGKCLRSVIHM 369
GK +R+V+ +
Sbjct: 363 HAGKSIRTVVKL 374
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P19854 | ADHX_HORSE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.4609 | 0.9730 | 0.9652 | yes | no |
| P14674 | ADH2_SOLTU | 1, ., 1, ., 1, ., 1 | 0.5394 | 0.9892 | 0.9657 | N/A | no |
| P14675 | ADH3_SOLTU | 1, ., 1, ., 1, ., 1 | 0.5394 | 0.9892 | 0.9657 | N/A | no |
| P14673 | ADH1_SOLTU | 1, ., 1, ., 1, ., 1 | 0.5368 | 0.9892 | 0.9657 | N/A | no |
| P12711 | ADHX_RAT | 1, ., 1, ., 1, ., 2, 8, 4 | 0.4555 | 0.9730 | 0.9652 | yes | no |
| P28032 | ADH2_SOLLC | 1, ., 1, ., 1, ., 1 | 0.5289 | 0.9892 | 0.9657 | N/A | no |
| P48977 | ADH_MALDO | 1, ., 1, ., 1, ., 1 | 0.5403 | 0.9730 | 0.95 | N/A | no |
| P00333 | ADH1_MAIZE | 1, ., 1, ., 1, ., 1 | 0.5349 | 0.9730 | 0.9525 | N/A | no |
| P80572 | ADHX_PEA | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5026 | 0.9730 | 0.9550 | N/A | no |
| Q4R1E8 | ADH2_ORYSI | 1, ., 1, ., 1, ., 1 | 0.5161 | 0.9730 | 0.9525 | N/A | no |
| Q3ZC42 | ADHX_BOVIN | 1, ., 1, ., 1, ., 2, 8, 4 | 0.4609 | 0.9730 | 0.9652 | yes | no |
| P46415 | ADHX_DROME | 1, ., 1, ., 1, ., 2, 8, 4 | 0.4441 | 0.9811 | 0.9604 | yes | no |
| P11766 | ADHX_HUMAN | 1, ., 1, ., 1, ., 2, 8, 4 | 0.4609 | 0.9730 | 0.9652 | yes | no |
| P25141 | ADH1_PETHY | 1, ., 1, ., 1, ., 1 | 0.5469 | 0.9730 | 0.9450 | N/A | no |
| P05336 | ADH1_HORVU | 1, ., 1, ., 1, ., 1 | 0.5376 | 0.9730 | 0.9525 | N/A | no |
| P12886 | ADH1_PEA | 1, ., 1, ., 1, ., 1 | 0.5107 | 0.9730 | 0.95 | N/A | no |
| P13603 | ADH1_TRIRP | 1, ., 1, ., 1, ., 1 | 0.5215 | 0.9730 | 0.95 | N/A | no |
| P17648 | ADH_FRAAN | 1, ., 1, ., 1, ., 1 | 0.5225 | 0.9865 | 0.9631 | N/A | no |
| P04707 | ADH2_MAIZE | 1, ., 1, ., 1, ., 1 | 0.5215 | 0.9730 | 0.9525 | N/A | no |
| P14219 | ADH1_PENAM | 1, ., 1, ., 1, ., 1 | 0.5403 | 0.9730 | 0.9525 | N/A | no |
| P28474 | ADHX_MOUSE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.4528 | 0.9730 | 0.9652 | yes | no |
| Q75ZX4 | ADH1_ORYSI | 1, ., 1, ., 1, ., 1 | 0.5349 | 0.9730 | 0.9525 | N/A | no |
| P10847 | ADH2_HORVU | 1, ., 1, ., 1, ., 1 | 0.5189 | 0.9514 | 0.9463 | N/A | no |
| Q8LEB2 | ADHL6_ARATH | 1, ., 1, ., 1, ., 1 | 0.7400 | 0.9973 | 0.9711 | yes | no |
| P10848 | ADH3_HORVU | 1, ., 1, ., 1, ., 1 | 0.5230 | 0.9649 | 0.9445 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.983 |
| 4th Layer | 1.1.1.1 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.IV.2461.1 | alcohol dehydrogenase (EC-1.1.1.1) (377 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XI.3391.1 | pyruvate decarboxylase (EC-4.1.1.1) (574 aa) | • | 0.899 | |||||||
 | gw1.V.2645.1 | hypothetical protein (479 aa) | • | 0.899 | |||||||
 | gw1.III.2325.1 | SubName- Full=Putative uncharacterized protein; (514 aa) | • | 0.899 | |||||||
 | gw1.4555.2.1 | annotation not avaliable (88 aa) | • | 0.899 | |||||||
 | gw1.134.62.1 | hypothetical protein (453 aa) | • | 0.899 | |||||||
 | grail3.0005008802 | aldehyde dehydrogenase (NAD+) (EC-1.2.1.3) (543 aa) | • | 0.899 | |||||||
 | fgenesh4_pg.C_LG_II000742 | hypothetical protein (480 aa) | • | 0.899 | |||||||
 | eugene3.01840014 | pyruvate decarboxylase (549 aa) | • | 0.899 | |||||||
 | eugene3.00060891 | pyruvate decarboxylase (EC-4.1.1.1) (606 aa) | • | 0.899 | |||||||
 | estExt_fgenesh4_pm.C_LG_XVI0442 | pyruvate decarboxylase (EC-4.1.1.1) (606 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 371 | |||
| PLN02827 | 378 | PLN02827, PLN02827, Alcohol dehydrogenase-like | 0.0 | |
| cd08301 | 369 | cd08301, alcohol_DH_plants, Plant alcohol dehydrog | 0.0 | |
| cd08277 | 365 | cd08277, liver_alcohol_DH_like, Liver alcohol dehy | 1e-170 | |
| cd08300 | 368 | cd08300, alcohol_DH_class_III, class III alcohol d | 1e-161 | |
| PLN02740 | 381 | PLN02740, PLN02740, Alcohol dehydrogenase-like | 1e-157 | |
| cd08299 | 373 | cd08299, alcohol_DH_class_I_II_IV, class I, II, IV | 1e-146 | |
| COG1062 | 366 | COG1062, AdhC, Zn-dependent alcohol dehydrogenases | 1e-136 | |
| cd05279 | 365 | cd05279, Zn_ADH1, Liver alcohol dehydrogenase and | 1e-135 | |
| TIGR02818 | 368 | TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat | 1e-127 | |
| cd08279 | 363 | cd08279, Zn_ADH_class_III, Class III alcohol dehyd | 1e-112 | |
| cd08278 | 365 | cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro | 5e-80 | |
| cd08281 | 371 | cd08281, liver_ADH_like1, Zinc-dependent alcohol d | 1e-77 | |
| TIGR03989 | 369 | TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa | 5e-76 | |
| cd08263 | 367 | cd08263, Zn_ADH10, Alcohol dehydrogenases of the M | 3e-62 | |
| TIGR03451 | 358 | TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi | 7e-55 | |
| COG1063 | 350 | COG1063, Tdh, Threonine dehydrogenase and related | 3e-47 | |
| cd05188 | 271 | cd05188, MDR, Medium chain reductase/dehydrogenase | 4e-46 | |
| COG1064 | 339 | COG1064, AdhP, Zn-dependent alcohol dehydrogenases | 3e-44 | |
| cd08231 | 361 | cd08231, MDR_TM0436_like, Hypothetical enzyme TM04 | 1e-40 | |
| cd08260 | 345 | cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD | 8e-40 | |
| cd08236 | 343 | cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog | 9e-40 | |
| cd08233 | 351 | cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio | 3e-39 | |
| cd08239 | 339 | cd08239, THR_DH_like, L-threonine dehydrogenase (T | 1e-38 | |
| cd08235 | 343 | cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas | 3e-36 | |
| cd05285 | 343 | cd05285, sorbitol_DH, Sorbitol dehydrogenase | 4e-35 | |
| cd05278 | 347 | cd05278, FDH_like, Formaldehyde dehydrogenases | 3e-34 | |
| cd08259 | 332 | cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD | 5e-33 | |
| cd08234 | 334 | cd08234, threonine_DH_like, L-threonine dehydrogen | 6e-33 | |
| cd08261 | 337 | cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD | 2e-32 | |
| cd08285 | 351 | cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd | 3e-31 | |
| cd05284 | 340 | cd05284, arabinose_DH_like, D-arabinose dehydrogen | 3e-30 | |
| cd08297 | 341 | cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA | 2e-29 | |
| cd08283 | 386 | cd08283, FDH_like_1, Glutathione-dependent formald | 2e-28 | |
| cd05281 | 341 | cd05281, TDH, Threonine dehydrogenase | 6e-28 | |
| pfam00107 | 131 | pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | 2e-27 | |
| cd08284 | 344 | cd08284, FDH_like_2, Glutathione-dependent formald | 1e-26 | |
| cd08254 | 338 | cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e | 1e-26 | |
| cd08287 | 345 | cd08287, FDH_like_ADH3, formaldehyde dehydrogenase | 8e-25 | |
| cd08245 | 330 | cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD | 7e-24 | |
| cd08269 | 312 | cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD | 1e-22 | |
| TIGR00692 | 340 | TIGR00692, tdh, L-threonine 3-dehydrogenase | 2e-22 | |
| cd08256 | 350 | cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD | 1e-21 | |
| PRK13771 | 334 | PRK13771, PRK13771, putative alcohol dehydrogenase | 1e-21 | |
| cd08286 | 345 | cd08286, FDH_like_ADH2, formaldehyde dehydrogenase | 4e-21 | |
| cd08298 | 329 | cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA | 8e-21 | |
| cd08282 | 375 | cd08282, PFDH_like, Pseudomonas putida aldehyde-di | 9e-21 | |
| cd08255 | 277 | cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro | 1e-20 | |
| cd08240 | 350 | cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa | 1e-20 | |
| PRK05396 | 341 | PRK05396, tdh, L-threonine 3-dehydrogenase; Valida | 3e-20 | |
| cd05283 | 337 | cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA | 6e-20 | |
| cd08265 | 384 | cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD | 4e-19 | |
| COG0604 | 326 | COG0604, Qor, NADPH:quinone reductase and related | 1e-18 | |
| cd08258 | 306 | cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD | 2e-18 | |
| PRK10309 | 347 | PRK10309, PRK10309, galactitol-1-phosphate dehydro | 1e-17 | |
| cd08266 | 342 | cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t | 5e-17 | |
| cd08276 | 336 | cd08276, MDR7, Medium chain dehydrogenases/reducta | 4e-16 | |
| cd08262 | 341 | cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD | 2e-15 | |
| TIGR03366 | 280 | TIGR03366, HpnZ_proposed, putative phosphonate cat | 4e-15 | |
| TIGR03201 | 349 | TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1 | 1e-13 | |
| cd08296 | 333 | cd08296, CAD_like, Cinnamyl alcohol dehydrogenases | 1e-13 | |
| cd08232 | 339 | cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | 2e-13 | |
| cd05286 | 320 | cd05286, QOR2, Quinone oxidoreductase (QOR) | 6e-13 | |
| PLN02702 | 364 | PLN02702, PLN02702, L-idonate 5-dehydrogenase | 2e-12 | |
| cd08249 | 339 | cd08249, enoyl_reductase_like, enoyl_reductase_lik | 5e-12 | |
| PRK09422 | 338 | PRK09422, PRK09422, ethanol-active dehydrogenase/a | 6e-12 | |
| cd05289 | 309 | cd05289, MDR_like_2, alcohol dehydrogenase and qui | 7e-12 | |
| pfam08240 | 108 | pfam08240, ADH_N, Alcohol dehydrogenase GroES-like | 7e-12 | |
| cd08268 | 328 | cd08268, MDR2, Medium chain dehydrogenases/reducta | 1e-11 | |
| cd08241 | 323 | cd08241, QOR1, Quinone oxidoreductase (QOR) | 6e-11 | |
| cd08271 | 325 | cd08271, MDR5, Medium chain dehydrogenases/reducta | 2e-10 | |
| PRK10083 | 339 | PRK10083, PRK10083, putative oxidoreductase; Provi | 2e-10 | |
| cd05276 | 323 | cd05276, p53_inducible_oxidoreductase, PIG3 p53-in | 8e-10 | |
| PTZ00354 | 334 | PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi | 1e-09 | |
| cd08267 | 319 | cd08267, MDR1, Medium chain dehydrogenases/reducta | 3e-09 | |
| cd08264 | 325 | cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t | 3e-08 | |
| cd08274 | 350 | cd08274, MDR9, Medium chain dehydrogenases/reducta | 3e-08 | |
| cd08250 | 329 | cd08250, Mgc45594_like, Mgc45594 gene product and | 4e-08 | |
| TIGR02819 | 393 | TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas | 6e-08 | |
| PLN02586 | 360 | PLN02586, PLN02586, probable cinnamyl alcohol dehy | 3e-07 | |
| PRK09880 | 343 | PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro | 8e-07 | |
| cd08247 | 352 | cd08247, AST1_like, AST1 is a cytoplasmic protein | 1e-06 | |
| PLN02514 | 357 | PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase | 1e-06 | |
| PRK14806 | 735 | PRK14806, PRK14806, bifunctional cyclohexadienyl d | 3e-06 | |
| PLN02178 | 375 | PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase | 2e-05 | |
| pfam02254 | 116 | pfam02254, TrkA_N, TrkA-N domain | 2e-05 | |
| cd08273 | 331 | cd08273, MDR8, Medium chain dehydrogenases/reducta | 2e-05 | |
| cd08253 | 325 | cd08253, zeta_crystallin, Zeta-crystallin with NAD | 3e-05 | |
| COG2130 | 340 | COG2130, COG2130, Putative NADP-dependent oxidored | 3e-05 | |
| cd08272 | 326 | cd08272, MDR6, Medium chain dehydrogenases/reducta | 4e-05 | |
| COG1748 | 389 | COG1748, LYS9, Saccharopine dehydrogenase and rela | 4e-05 | |
| cd05288 | 329 | cd05288, PGDH, Prostaglandin dehydrogenases | 5e-05 | |
| cd08243 | 320 | cd08243, quinone_oxidoreductase_like_1, Quinone ox | 9e-05 | |
| cd08251 | 303 | cd08251, polyketide_synthase, polyketide synthase | 1e-04 | |
| cd08230 | 355 | cd08230, glucose_DH, Glucose dehydrogenase | 2e-04 | |
| TIGR02824 | 325 | TIGR02824, quinone_pig3, putative NAD(P)H quinone | 2e-04 | |
| COG0287 | 279 | COG0287, TyrA, Prephenate dehydrogenase [Amino aci | 3e-04 | |
| PRK01390 | 460 | PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 3e-04 | |
| cd08242 | 319 | cd08242, MDR_like, Medium chain dehydrogenases/red | 4e-04 | |
| cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 6e-04 | |
| COG0569 | 225 | COG0569, TrkA, K+ transport systems, NAD-binding c | 0.001 | |
| TIGR02822 | 329 | TIGR02822, adh_fam_2, zinc-binding alcohol dehydro | 0.001 | |
| PRK06545 | 359 | PRK06545, PRK06545, prephenate dehydrogenase; Vali | 0.002 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 0.002 | |
| cd01075 | 200 | cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d | 0.002 | |
| cd05282 | 323 | cd05282, ETR_like, 2-enoyl thioester reductase-lik | 0.003 | |
| TIGR01751 | 398 | TIGR01751, crot-CoA-red, crotonyl-CoA reductase | 0.003 | |
| PRK08507 | 275 | PRK08507, PRK08507, prephenate dehydrogenase; Vali | 0.003 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 0.004 |
| >gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 695 bits (1794), Expect = 0.0
Identities = 296/378 (78%), Positives = 336/378 (88%), Gaps = 7/378 (1%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
S+SI QP VITC+AAVAWGAG+ LV+EEVEV+PPQP EIRIKVV TSLCRSD++AWE+Q
Sbjct: 1 SSSSISQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ 60
Query: 61 --WP-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER 113
+P + IVES+G GVTEF +G+HVLTVF GEC +CR C S KSN C+VLGLER
Sbjct: 61 ALFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLER 120
Query: 114 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA 173
+GVMHSDQ+TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV +APL KICLLSCG++A
Sbjct: 121 KGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAA 180
Query: 174 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
GLGAAWNVAD+SKGS+VVIFGLGTVGLSVAQGAK RGAS+IIGVD NPEK EKAK FGVT
Sbjct: 181 GLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT 240
Query: 234 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK 293
+F+NPND +EP+QQVIKR+T GGADYSFEC+GDTG+ TTALQSC DGWGL VTLGVPK K
Sbjct: 241 DFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK 300
Query: 294 PEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQA 353
PEV+AHYGLFLSGRTLKGSLFGGWKPK+DLPSLV++Y+ KE M+DEFITHNL F++IN+A
Sbjct: 301 PEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKA 360
Query: 354 FNLMKEGKCLRSVIHMPK 371
F LM+EGKCLR VIHMPK
Sbjct: 361 FELMREGKCLRCVIHMPK 378
|
Length = 378 |
| >gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 600 bits (1549), Expect = 0.0
Identities = 217/369 (58%), Positives = 276/369 (74%), Gaps = 11/369 (2%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCC--RI- 67
ITCKAAVAW AG+PLV+EEVEV PPQ E+RIK++ TSLC +D+ WE + RI
Sbjct: 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60
Query: 68 -------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHS 119
VESVG GVT+ G+HVL VF GECK CR CKS+KSN C++L + RGVM +
Sbjct: 61 GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
D ++RFSI GKP+YH+ S+FSEYTVVH GC K++ APL+K+CLLSCG+S GLGAAW
Sbjct: 121 DGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAW 180
Query: 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239
NVA + KGSTV IFGLG VGL+VA+GA+ RGASRIIGVD NP K E+AK FGVTEF+NP
Sbjct: 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK 240
Query: 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH 299
D+++PVQ+VI +T GG DYSFEC G+ + +A + DGWG+ V LGVP + H
Sbjct: 241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTH 300
Query: 300 YGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKE 359
L+GRTLKG+LFGG+KPKTDLP+LV +Y+KKE +++FITH L F +IN+AF+L+ +
Sbjct: 301 PMNLLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLK 360
Query: 360 GKCLRSVIH 368
G+CLR ++H
Sbjct: 361 GECLRCILH 369
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369 |
| >gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 479 bits (1235), Expect = e-170
Identities = 186/366 (50%), Positives = 249/366 (68%), Gaps = 11/366 (3%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE----TQWP---- 62
I CKAAVAW AG+PLV+EE+EV PP+ E+RIK++ TS+C +DI A E T +P
Sbjct: 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKATLFPVILG 60
Query: 63 -QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
+ IVESVG GVT G+ V+ +FIG+C C C+S K+N C+ G+M D
Sbjct: 61 HEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLM-PDG 119
Query: 122 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 181
+RF+ KGK +YH+ S+FS+YTVV K+ APLE +CLL CG S G GAAWN
Sbjct: 120 TSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNT 179
Query: 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241
A + GSTV +FGLG VGLS GAK GASRIIGVD N +K EKAK FG T+F+NP D+
Sbjct: 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDS 239
Query: 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG 301
++PV +VI+ +T GG DYSFEC G+ ++ AL+S GWG++V +GVP E++
Sbjct: 240 DKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGA-ELSIRPF 298
Query: 302 LFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK 361
+ GRT KGS FGG+K ++D+P LV++Y+ K+F +DE ITH L FE+IN+ F+LMK G+
Sbjct: 299 QLILGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE 358
Query: 362 CLRSVI 367
C+R+VI
Sbjct: 359 CIRTVI 364
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 455 bits (1172), Expect = e-161
Identities = 177/369 (47%), Positives = 246/369 (66%), Gaps = 12/369 (3%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCC----- 65
ITCKAAVAW AG+PL +EEVEV PP+ E+RIK++ T +C +D P+
Sbjct: 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60
Query: 66 -----RIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTC-EVLGLERRGVMHS 119
IVESVG GVT G+HV+ ++ EC C+ CKS K+N C ++ + +G+M
Sbjct: 61 GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-P 119
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
D +RFS KGKP+YH+ S+FSEYTVV K++ APL+K+CLL CG++ G GA
Sbjct: 120 DGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVL 179
Query: 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239
N A + GSTV +FGLG VGL+V QGAKA GASRIIG+D NP+K E AK FG T+ +NP
Sbjct: 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPK 239
Query: 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH 299
D+++P+QQV+ +TDGG DY+FECIG+ ++ AL++C GWG +V +GV E++
Sbjct: 240 DHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTR 299
Query: 300 YGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKE 359
++GR KG+ FGGWK ++ +P LV Y+K + VDEFITH + ++IN+AF+LM
Sbjct: 300 PFQLVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHA 359
Query: 360 GKCLRSVIH 368
GK +R+V+
Sbjct: 360 GKSIRTVVK 368
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368 |
| >gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 445 bits (1146), Expect = e-157
Identities = 192/380 (50%), Positives = 265/380 (69%), Gaps = 20/380 (5%)
Query: 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW----ETQ-- 60
Q +VITCKAAVAWG G+PLV+EE+ V+PPQ E+RIK++ TS+C +D++AW E Q
Sbjct: 5 QGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRA 64
Query: 61 WP-----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-R 114
+P + IVESVG GV + G+HV+ +F GEC CR CK DK+N CE ++ +
Sbjct: 65 YPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFK 124
Query: 115 GVMHSDQQTRFSIK--GKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS 172
VM +D +TRFS K G+P+YH+ S+F+EYTV+ S C VK+ APL+K+ LLSCG+S
Sbjct: 125 SVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVS 184
Query: 173 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232
G+GAAWN A++ GS+V IFGLG VGL+VA+GA+ARGAS+IIGVD NPEK EK K G+
Sbjct: 185 TGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244
Query: 233 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV--- 289
T+F+NP D+++PV + I+ +T GG DYSFEC G+ ++ A S DGWGL V LG+
Sbjct: 245 TDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPT 304
Query: 290 PKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFED 349
PK+ P H GR++ GS+FG +K K+ LP+L + ++ +D FITH L FE
Sbjct: 305 PKMLP---LHPMELFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEK 361
Query: 350 INQAFNLMKEGKCLRSVIHM 369
IN+AF L+++GK LR ++H+
Sbjct: 362 INEAFQLLEDGKALRCLLHL 381
|
Length = 381 |
| >gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 418 bits (1077), Expect = e-146
Identities = 172/369 (46%), Positives = 236/369 (63%), Gaps = 11/369 (2%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI----TAWETQWP-- 62
+VI CKAAV W +P +EE+EV PP+ E+RIK+V T +CRSD T +P
Sbjct: 4 KVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVTPFPVI 63
Query: 63 ---QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL-ERRGVMH 118
+ IVESVG GVT G+ V+ +F+ +C CR C + +SN C L + +G+M
Sbjct: 64 LGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM- 122
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 178
D +RF+ KGKP++H+ S+FSEYTVV K+ + APLEK+CL+ CG S G GAA
Sbjct: 123 QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAA 182
Query: 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
N A ++ GST +FGLG VGLS G KA GASRII VD N +K KAK G TE +NP
Sbjct: 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINP 242
Query: 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA 298
D +P+Q+V+ +TDGG D+SFE IG + AL SC +G+G++V +GVP ++
Sbjct: 243 QDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSI 302
Query: 299 HYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK 358
+ L L+GRT KG++FGGWK K +P LV Y+ K+F +D ITH L FE IN+ F+L++
Sbjct: 303 NPMLLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLR 362
Query: 359 EGKCLRSVI 367
GK +R+V+
Sbjct: 363 SGKSIRTVL 371
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373 |
| >gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 392 bits (1009), Expect = e-136
Identities = 163/369 (44%), Positives = 225/369 (60%), Gaps = 13/369 (3%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-------- 62
+ +AAVA AG+PL +EEV+++PP+ E+ +++ T +C +D P
Sbjct: 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEGFPAVLG 60
Query: 63 -QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG-LERRGVMHSD 120
+ IVE+VG GVT G+HV+ +F EC C+ C S K N CE + + +G M D
Sbjct: 61 HEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PD 119
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180
TR S G PVYHY S+F+EYTVVH VK+ APLEK CLL CG++ G+GA N
Sbjct: 120 GTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVN 179
Query: 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240
A + G TV +FGLG VGL+ QGAKA GA RII VD NPEK E AK FG T F+NP +
Sbjct: 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKE 239
Query: 241 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY 300
+ V + I +TDGGADY+FEC+G+ ++ AL+ G +V +GV E++
Sbjct: 240 -VDDVVEAIVELTDGGADYAFECVGNVEVMRQALE-ATHRGGTSVIIGVAGAGQEISTRP 297
Query: 301 GLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEG 360
++GR KGS FGG +P++D+P LV+ Y+ + +D +TH + EDIN+AF+LM EG
Sbjct: 298 FQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEG 357
Query: 361 KCLRSVIHM 369
K +RSVI
Sbjct: 358 KSIRSVIRF 366
|
Length = 366 |
| >gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 389 bits (1000), Expect = e-135
Identities = 169/365 (46%), Positives = 231/365 (63%), Gaps = 11/365 (3%)
Query: 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP---------Q 63
CKAAV W G+PL +EE+EV PP+ E+RIKVV T +C +D+ + + P +
Sbjct: 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPTPLPVILGHE 60
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVL-GLERRGVMHSDQQ 122
IVES+GPGVT G+ V+ +F +C C+QC + + N C G RG+M SD
Sbjct: 61 GAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGT 119
Query: 123 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 182
+RF+ KGKP++H+ S+F+EYTVV K+ APLEK+CL+ CG S G GAA N A
Sbjct: 120 SRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTA 179
Query: 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242
++ GST +FGLG VGLSV G KA GASRII VD N +K EKAK G TE +NP D +
Sbjct: 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQD 239
Query: 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL 302
+P+ +V+ +TDGG DY+FE IG + AL + G G +V +GVP E
Sbjct: 240 KPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPND 299
Query: 303 FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC 362
L+GRT+KG++FGGWK K +P LV Y +K+F +DE ITH L FE+IN F+LM+ G+
Sbjct: 300 LLTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGES 359
Query: 363 LRSVI 367
+R+++
Sbjct: 360 IRTIL 364
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 369 bits (950), Expect = e-127
Identities = 168/367 (45%), Positives = 236/367 (64%), Gaps = 12/367 (3%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCC-------- 65
+AAVAW AGQPL +EEV+V PQ E+ +++V T +C +D P+
Sbjct: 3 RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62
Query: 66 --RIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE-VLGLERRGVMHSDQQ 122
IVE+VG GVT G+HV+ ++ EC C+ C S K+N C V + +G+M D
Sbjct: 63 GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGT 121
Query: 123 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 182
+RFS G+P+YHY S+FSEYTVV K++ APLE++CLL CG++ G+GA N A
Sbjct: 122 SRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181
Query: 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242
+ +G TV +FGLG +GLSV QGA+ ASRII +D NP K E AK G T+ +NPND +
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYD 241
Query: 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL 302
+P+Q+VI ITDGG DYSFECIG+ ++ AL+ C GWG ++ +GV E++
Sbjct: 242 KPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQ 301
Query: 303 FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC 362
++GR +GS FGG K +T+LP +V +Y+K E +D+F+TH + EDIN+AF+LM EGK
Sbjct: 302 LVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS 361
Query: 363 LRSVIHM 369
+R+VIH
Sbjct: 362 IRTVIHY 368
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368 |
| >gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-112
Identities = 141/365 (38%), Positives = 199/365 (54%), Gaps = 15/365 (4%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------C 64
+AAV G+PL +EEVE++ P P E+ +++ LC SD+ P
Sbjct: 2 RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAPLPAVLGHEG 61
Query: 65 CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTR 124
+VE VGPGVT G+HV+ +I C TCR C + N C+ LG G D R
Sbjct: 62 AGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCD-LGAGILGGQLPDGTRR 120
Query: 125 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADI 184
F+ G+PV C + +F+EYTVV VK+ PL++ LL CG++ G+GA N A +
Sbjct: 121 FTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARV 180
Query: 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 244
G TV + G G VGL+ QGA+ GASRII VD PEK E A+ FG T +N ++ ++
Sbjct: 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE-DDA 239
Query: 245 VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH-YGL 302
V+ V + +TDG GADY+FE +G I AL G G AV +G+ V+ L
Sbjct: 240 VEAV-RDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPALEL 297
Query: 303 FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC 362
FLS + L+GSL+G P+ D+P L++ Y +DE +T ++IN+AF M G+
Sbjct: 298 FLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGEN 357
Query: 363 LRSVI 367
R VI
Sbjct: 358 ARGVI 362
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363 |
| >gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 248 bits (637), Expect = 5e-80
Identities = 122/370 (32%), Positives = 180/370 (48%), Gaps = 17/370 (4%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE----TQWP---- 62
+ AAV G P V+E+VE++ P+P+E+ +++V T +C +D+ + T P
Sbjct: 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPTPLPAVLG 60
Query: 63 -QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
+ +VE+VG VT G+HV+ F C C C S CE D
Sbjct: 61 HEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPDG 119
Query: 122 QTRFSI-KGKPVY-HYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
T S+ G PV+ H+ SSF+ Y VVH VKV PLE + L CG+ G GA
Sbjct: 120 STPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVL 179
Query: 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239
NV GS++ +FG G VGL+ AK G + II VD + E AK G T +NP
Sbjct: 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPK 239
Query: 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH 299
+ + + I+ IT GG DY+ + G +I A+ + G +G P EV
Sbjct: 240 EED--LVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLD 296
Query: 300 YGLFL-SGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK 358
L SG+T++G + G P+ +P L+ Y + +F D+ +T FEDINQA +
Sbjct: 297 VNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTF-YPFEDINQAIADSE 355
Query: 359 EGKCLRSVIH 368
GK ++ V+
Sbjct: 356 SGKVIKPVLR 365
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365 |
| >gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 1e-77
Identities = 128/364 (35%), Positives = 187/364 (51%), Gaps = 15/364 (4%)
Query: 15 AAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP---------QCC 65
A + +PLV+EEVE++PP P E+ +K+ LC SD++ P +
Sbjct: 11 APTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPLPMALGHEAA 70
Query: 66 RIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTR 124
+V VG GVT+ G+HV+ VF+ C CR C + CE G + S + R
Sbjct: 71 GVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGR-R 129
Query: 125 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADI 184
++G + H+ VS+F+EY VV VK+ PLE L C + G+GA N A +
Sbjct: 130 LRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGV 189
Query: 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 244
G +V + GLG VGLS GA A GAS+++ VD N +K A+ G T +N D N
Sbjct: 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPN-A 248
Query: 245 VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA-AHYGLF 303
V+QV + +T GG DY+FE G + TA + G G VT G+P + ++ L
Sbjct: 249 VEQV-RELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSLV 306
Query: 304 LSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL 363
RTLKGS G P+ D+P + YL VD+ +TH L ++IN+ F+ + G+ +
Sbjct: 307 AEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAV 366
Query: 364 RSVI 367
R VI
Sbjct: 367 RQVI 370
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371 |
| >gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 5e-76
Identities = 136/370 (36%), Positives = 194/370 (52%), Gaps = 21/370 (5%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQWPQC------- 64
KAAV WG GQP VEE+E++ P+ E+ +K+V + LC SD + + P+
Sbjct: 3 KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHE 62
Query: 65 -CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
+V VGPGVT G+HV+ FI C CR C + N C++ G SD
Sbjct: 63 GAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGTY 122
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD 183
RF G+ V C + +FSEYTVV VK+ PL+K CL+ CG+ G G+A N+AD
Sbjct: 123 RFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIAD 182
Query: 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243
+ G TVV+ G+G VG++ QGA GA ++I VD K E+A FG T E
Sbjct: 183 VRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAF--ASMEE 240
Query: 244 PVQQVIKRITDG-GADYSFECIG--DTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY 300
V Q+++ +T+G GAD + +G D I AL + G G V G+ + +V
Sbjct: 241 AV-QLVRELTNGQGADKTIITVGEVDGEHIAEALSATRKG-GRVVVTGLGPMA-DVDVKV 297
Query: 301 GLF---LSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
LF L + L+G+LFGG P+ D+P L+ Y + +DE IT + IN+ + M
Sbjct: 298 NLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRTYTLDQINEGYQDM 357
Query: 358 KEGKCLRSVI 367
+GK +R VI
Sbjct: 358 LDGKNIRGVI 367
|
This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369 |
| >gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 3e-62
Identities = 118/371 (31%), Positives = 163/371 (43%), Gaps = 23/371 (6%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW--ETQWPQCCRI---- 67
KAAV G PL +EE+ V P+ EI I+V +C SD+ E +P +
Sbjct: 2 KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPFPPPFVLGHEI 61
Query: 68 ---VESVGPGVT---EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR-GVMHSD 120
V VGP V + G+ V+ FI C CR C K N CE R D
Sbjct: 62 SGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYD 121
Query: 121 QQTR-FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
TR F + G PVY Y ++ +EY VV + + + +L C GA
Sbjct: 122 GTTRLFRLDGGPVYMY-SMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALK 180
Query: 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239
+ AD+ G TV + G+G VG S Q AKA GAS II VD EK KAK G T +N
Sbjct: 181 HAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAA 240
Query: 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA 298
+ I+ IT G G D E +G AL DG G AV +G+
Sbjct: 241 KEDAVAA--IREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEI 297
Query: 299 HYGLFLS-GRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
+ G + GS G +P+ DLP LV + + +TH E+IN+A+ +
Sbjct: 298 PITRLVRRGIKIIGSY--GARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENL 355
Query: 358 KEGKC-LRSVI 367
++G R+++
Sbjct: 356 RKGLIHGRAIV 366
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367 |
| >gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 7e-55
Identities = 116/369 (31%), Positives = 178/369 (48%), Gaps = 26/369 (7%)
Query: 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE----TQWP----- 62
T + +A G P+ +E + V P P E+ + + +C +D+ E ++P
Sbjct: 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDEFPFLLGH 60
Query: 63 QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 122
+ +VE+VG GVT+ G++V+ + C CR CK + C H+ Q
Sbjct: 61 EAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYC--------FDTHNATQ 112
Query: 123 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 182
G + + +F+E T+VH+G KV A LL CG+ AGLGAA N
Sbjct: 113 KMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTG 172
Query: 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242
+ +G +V + G G VG + GA GAS+II VD + K E A+ FG T +N +
Sbjct: 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG-T 231
Query: 243 EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG 301
+PV+ I+ +T G GAD + +G A + D G V +GVP P++
Sbjct: 232 DPVEA-IRALTGGFGADVVIDAVGRPETYKQAFYA-RDLAGTVVLVGVP--TPDMTLELP 287
Query: 302 L---FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK 358
L F G LK S +G P+ D P LV+ YL+ +D F+T + +D+ +AF+ M
Sbjct: 288 LLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMH 347
Query: 359 EGKCLRSVI 367
G LRSV+
Sbjct: 348 AGDVLRSVV 356
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358 |
| >gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-47
Identities = 92/360 (25%), Positives = 141/360 (39%), Gaps = 31/360 (8%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQC-----CRIV 68
KAAV + G + +EE P P ++ I+V T +C SD+ + P
Sbjct: 2 KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61
Query: 69 ESVG-----PGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
E VG V F G+ V+ C CR C++ + N CE G
Sbjct: 62 EFVGEVVEVGVVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPG------------- 108
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD 183
G F+EY V + + E+ L+ L+ A
Sbjct: 109 ---FYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAA 165
Query: 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243
+ G TVV+ G G +GL AK GAS +I VD +PE+ E AK G + + N + +
Sbjct: 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV-NPSED 224
Query: 244 PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL 302
I +T G GAD E +G + AL++ G G V +GV + +
Sbjct: 225 DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDIPLPAGLV 283
Query: 303 FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC 362
TL+GSL + D ++ + ++ ITH L +D +A+ L + K
Sbjct: 284 VSKELTLRGSLRPSGRE--DFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKE 341
|
Length = 350 |
| >gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 4e-46
Identities = 74/291 (25%), Positives = 111/291 (38%), Gaps = 40/291 (13%)
Query: 39 EIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFNEGEHVLTV 87
E+ ++V LC +D+ +P +V VGPGVT G+ V+ +
Sbjct: 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60
Query: 88 FIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 147
C TC C+ +LG G F+EY VV
Sbjct: 61 PNLGCGTCELCRELCPG-GGILGEGLDG------------------------GFAEYVVV 95
Query: 148 HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAK 207
+ V + LE+ LL L+ A + G TV++ G G VGL AQ AK
Sbjct: 96 PADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAK 155
Query: 208 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267
A GA R+I D + EK E AK G ++ + + + ++ GGAD + +G
Sbjct: 156 AAGA-RVIVTDRSDEKLELAKELGADHVIDYKEEDLEEE--LRLTGGGGADVVIDAVGGP 212
Query: 268 GMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318
+ AL+ G V +G P + L T+ GS G +
Sbjct: 213 ETLAQALR-LLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTRE 262
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271 |
| >gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-44
Identities = 101/375 (26%), Positives = 153/375 (40%), Gaps = 55/375 (14%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR---- 66
+T KAAV GQPL +EEV V P P E+ IKV +C +D+ + WP
Sbjct: 2 MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIP 61
Query: 67 ------IVESVGPGVTEFNEGEHVLTV-FIGECKTCRQCKSDKSNTCE---VLGLERRGV 116
V VG GVT G+ V + C C C+S N C + G G
Sbjct: 62 GHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDG- 120
Query: 117 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 176
++EY VV + VK+ L + L C
Sbjct: 121 -----------------------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR 157
Query: 177 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
A A++ G V + G G +G Q AKA GA +I + + EK E AK G +
Sbjct: 158 AL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVI 215
Query: 237 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEV 296
N +D ++ ++ V + AD + +G + +L++ G G V +G+P P
Sbjct: 216 NSSD-SDALEAVKEI-----ADAIIDTVGPATLE-PSLKALRRG-GTLVLVGLPGGGPIP 267
Query: 297 AAHYGLF-LSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFN 355
L L ++ GSL G + DL ++ E + I + ++IN+A+
Sbjct: 268 LLPAFLLILKEISIVGSLVGT---RADLEEALD--FAAEGKIKPEILETIPLDEINEAYE 322
Query: 356 LMKEGKCL-RSVIHM 369
M++GK R+VI M
Sbjct: 323 RMEKGKVRGRAVIDM 337
|
Length = 339 |
| >gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-40
Identities = 96/377 (25%), Positives = 148/377 (39%), Gaps = 40/377 (10%)
Query: 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP---------- 62
+AAV G G+PL + EV + +P + ++V +C SD+ + P
Sbjct: 1 ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60
Query: 63 -QCCRIVESVGPGVTEFNEGEH-------VLTVFIGECKTCRQCKSDKSNTCEVLGLERR 114
R+V +G GVT GE +V C C +C CE R+
Sbjct: 61 EGVGRVVA-LGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCE----NRK 114
Query: 115 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA-VKVSSIAPLEKICLLSCGLSA 173
H + G ++E+ + G A V+V P E +C L+
Sbjct: 115 KYGHEASCDDPHLSG----------GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALAT 164
Query: 174 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
L A + G TVV+ G G +GL AK GA R+I +D +PE+ E A+ FG
Sbjct: 165 VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGAD 224
Query: 234 EFLNPNDNNEP-VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291
++ ++ +P + +++ IT G GAD E G + L+ G G V +G
Sbjct: 225 ATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVA 283
Query: 292 LKPEVAAH-YGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDI 350
V + T+ G + R + F E +TH EDI
Sbjct: 284 PAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERT-QDRFPFAELVTHRYPLEDI 342
Query: 351 NQAFNLMKEGKCLRSVI 367
N+A L + G L+ VI
Sbjct: 343 NEALELAESGTALKVVI 359
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361 |
| >gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 8e-40
Identities = 74/264 (28%), Positives = 111/264 (42%), Gaps = 35/264 (13%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----------Q 63
+AAV G+PL + EV P P+ + ++V +CRSD W+ P +
Sbjct: 2 RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
+V VG V+ + G+ V F+ C TC C++ SN CE Q
Sbjct: 62 FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQ-----------VQP 110
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 181
F+ G SF+EY V V++ L C + A +
Sbjct: 111 GFTHPG----------SFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQ 160
Query: 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241
A + G V + G G VGLS A A GA R+I VD + +K E A+ G +N ++
Sbjct: 161 ARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE- 218
Query: 242 NEPVQQVIKRITDGGADYSFECIG 265
E V ++ +T GGA S + +G
Sbjct: 219 VEDVAAAVRDLTGGGAHVSVDALG 242
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345 |
| >gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 9e-40
Identities = 95/366 (25%), Positives = 148/366 (40%), Gaps = 50/366 (13%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP---------QC 64
KA V G G L E++ P P E+ +KV +C SDI + +
Sbjct: 2 KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYHPPLVLGHEF 60
Query: 65 CRIVESVGPGVTEFNEGEHVLTVF-IGECKTCRQCKSDKSNTCE---VLGLERRGVMHSD 120
VE VG GV + G+ V V + C C CK + + C +G R G
Sbjct: 61 SGTVEEVGSGVDDLAVGDRV-AVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDG----- 114
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180
+F+EY V + +K+ E+ ++ + L A
Sbjct: 115 -------------------AFAEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVALHAVRL 154
Query: 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240
A I+ G TVV+ G GT+GL Q K GA R+I VD + EK A+ G + +NP +
Sbjct: 155 -AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE 213
Query: 241 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK--LKPEVA 297
+ + ++ +T+G GAD E G I AL G G V +G+P +
Sbjct: 214 EDV---EKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEE 269
Query: 298 AHYGLFLSGRTLKGS--LFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFN 355
A + T++GS + P + + ++ + V+ ITH L ED AF
Sbjct: 270 AFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFE 329
Query: 356 LMKEGK 361
+ + +
Sbjct: 330 RLADRE 335
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343 |
| >gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-39
Identities = 88/332 (26%), Positives = 130/332 (39%), Gaps = 69/332 (20%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET-------------- 59
KAA G + VEEV P +P E++IKV +C SD+ +
Sbjct: 2 KAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLT 60
Query: 60 --QWPQC-----CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE 112
P +V VG GVT F G+ V+ +C TC CK N C+ LG
Sbjct: 61 GETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFI 120
Query: 113 RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS 172
G+ F+EY VV + K+ PLE
Sbjct: 121 --GLGGGG------------------GGFAEYVVVPAYHVHKLPDNVPLE---------- 150
Query: 173 AGLGA-------AWN---VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222
A AW+ + G T ++ G G +GL KA GAS+II + +
Sbjct: 151 --EAALVEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEA 208
Query: 223 KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGW 281
+ E A+ G T L+P + V ++++T G G D SF+C G + TA+ +
Sbjct: 209 RRELAEELGATIVLDPTE--VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR- 265
Query: 282 GLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSL 313
G AV + + + + L L +TL GS+
Sbjct: 266 GTAVNVAIWEKPISFNPND-LVLKEKTLTGSI 296
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351 |
| >gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-38
Identities = 94/366 (25%), Positives = 147/366 (40%), Gaps = 42/366 (11%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQC--------- 64
+ AV G + + E V P P E+ ++V + LC SD+ +
Sbjct: 2 RGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGH 60
Query: 65 --CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 122
+V +VGPGVT F G+ V+ C CR C+ C
Sbjct: 61 EPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCT--------------- 105
Query: 123 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 182
+ Y + +EY +V + + LL CG+ A
Sbjct: 106 -----SKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA-YHALRRV 159
Query: 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242
+S TV++ G G VGL A+A GA +IGVD +PE+ E AKA G +N ++
Sbjct: 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDD 219
Query: 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV-PKLKPEVAAHYG 301
VQ++ + + GAD + EC G+T AL++ WG V +G +L EV+
Sbjct: 220 --VQEIRELTSGAGADVAIECSGNTAARRLALEAVRP-WGRLVLVGEGGELTIEVSND-- 274
Query: 302 LFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK 361
L RTL GS + D+ + + VD +TH + +A+ L +G+
Sbjct: 275 LIRKQRTLIGSWY---FSVPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE 331
Query: 362 CLRSVI 367
+ V
Sbjct: 332 SGKVVF 337
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-36
Identities = 99/379 (26%), Positives = 143/379 (37%), Gaps = 61/379 (16%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--WPQCCRI---- 67
KAAV G + +EEV V P P E+ +KV +C +D+ + RI
Sbjct: 2 KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60
Query: 68 ----VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
+ VG GVT F G+ V C C C N C
Sbjct: 61 IAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPN--------------- 105
Query: 124 RFSIKGKPVYHY-CAVSSFSEYTVVHS-----GCAVKVSSIAPLEKICL---LSCGLSAG 174
+ G Y F+EY V + G +K+ E+ L L+C +
Sbjct: 106 -YKKFG---NLYDGG---FAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI--- 155
Query: 175 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234
A A I G TV++ G G +GL A AKA GA ++I D N + E AK G
Sbjct: 156 --NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADY 213
Query: 235 FLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK 293
++ + + + + ++ +TDG GAD G AL+ G + G+PK
Sbjct: 214 TIDAAEED--LVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGS 271
Query: 294 PEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLK----KEFMVDEFITHNLLFED 349
+ T+ GS P L+ + V + ITH ED
Sbjct: 272 TVNIDPNLIHYREITITGSYAAS-------PEDYKEALELIASGKIDVKDLITHRFPLED 324
Query: 350 INQAFNLMKEGKCLRSVIH 368
I +AF L +GK L+ VI
Sbjct: 325 IEEAFELAADGKSLKIVIT 343
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343 |
| >gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 4e-35
Identities = 101/385 (26%), Positives = 154/385 (40%), Gaps = 72/385 (18%)
Query: 15 AAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRI------- 67
AAV G G L +EE + P P E+ ++V +C SD+ ++ RI
Sbjct: 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKH-----GRIGDFVVKE 54
Query: 68 -----------VESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRG 115
V +VG GVT G+ V + + C+TC CKS + N C
Sbjct: 55 PMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVP-CRTCEFCKSGRYNLCP-------- 105
Query: 116 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGL 175
RF+ P Y + K+ LE+ L+ LS G+
Sbjct: 106 ------DMRFA--ATPPVDGT----LCRYVNHPADFCHKLPDNVSLEEGALVE-PLSVGV 152
Query: 176 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235
A A + G TV++FG G +GL A AKA GA++++ D +P + E AK G T
Sbjct: 153 HAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHT 211
Query: 236 LNP--NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK 293
+N D E +++ + + G D EC G I TA+ + G G V +G+ K +
Sbjct: 212 VNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKPE 270
Query: 294 PEVAAHYGLFLSGR--TLKGSLF---GGWKPKTDLPS--LVNRYLKKEFMVDEFITHNLL 346
+ S R ++G F + +L + V+ V ITH
Sbjct: 271 VTLPL---SAASLREIDIRGV-FRYANTYPTAIELLASGKVD--------VKPLITHRFP 318
Query: 347 FEDINQAFNLMKEGK--CLRSVIHM 369
ED +AF +GK ++ VI
Sbjct: 319 LEDAVEAFETAAKGKKGVIKVVIEG 343
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343 |
| >gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 3e-34
Identities = 99/376 (26%), Positives = 144/376 (38%), Gaps = 50/376 (13%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQ-PEEIRIKVVCTSLCRSDITAWETQWPQC-------- 64
KA V G G+ + +EEV Q P + ++V TS+C SD+ + P
Sbjct: 2 KALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGH 60
Query: 65 --CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 122
V VG V G+ V I C CR C+ CE
Sbjct: 61 EFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGW--------- 111
Query: 123 TRFSIKGKPVYHYCAVS-SFSEYTVVH--SGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
+ +EY V K+ P E +LS L G A
Sbjct: 112 ----------KLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAE 161
Query: 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239
A I GSTV + G G VGL GA+ GA+RII VD+NPE+ + AK G T+ +NP
Sbjct: 162 L-AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPK 220
Query: 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKL--KPEV 296
N + V+Q+++ +T G G D E +G + T+ + KP+
Sbjct: 221 -NGDIVEQILE-LTGGRGVDCVIEAVG----FEETFEQAVKVVRPGGTIANVGVYGKPDP 274
Query: 297 AAHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFN 355
G F T K L +P L++ + + + ITH +DI +A+
Sbjct: 275 LPLLGEWFGKNLTFKTGLVPVRA---RMPELLDLIEEGKIDPSKLITHRFPLDDILKAYR 331
Query: 356 LMKEGK--CLRSVIHM 369
L C++ VI
Sbjct: 332 LFDNKPDGCIKVVIRP 347
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347 |
| >gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 5e-33
Identities = 106/371 (28%), Positives = 155/371 (41%), Gaps = 58/371 (15%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----------Q 63
KAA+ +PL +EEV P P E+ IKV +C D+ W+ +P +
Sbjct: 2 KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHE 61
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSD 120
VE VG GV F G+ V+ + C C C S + N C G E G
Sbjct: 62 IVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDG----- 116
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180
F+EY V VK+ E L +C + + A
Sbjct: 117 -------------------GFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-K 156
Query: 181 VADISKGSTVVI-FGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239
A + KG TV++ G VG+ Q AKA GA R+I V +PEK + K G ++ +
Sbjct: 157 RAGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS 215
Query: 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA-A 298
+E V+++ GGAD E +G + I +L+S G G V +G + P+ A
Sbjct: 216 KFSEDVKKL------GGADVVIELVG-SPTIEESLRSLNKG-GRLVLIG--NVTPDPAPL 265
Query: 299 HYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
GL L + GS+ K D+ + L KE + I + EDIN+A +
Sbjct: 266 RPGLLILKEIRIIGSISA---TKADVEEALK--LVKEGKIKPVIDRVVSLEDINEALEDL 320
Query: 358 KEGKCL-RSVI 367
K GK + R V+
Sbjct: 321 KSGKVVGRIVL 331
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332 |
| >gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 6e-33
Identities = 102/378 (26%), Positives = 152/378 (40%), Gaps = 68/378 (17%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE----TQWP-----QC 64
KA V G G+ L VEEV V P P+E+ IKV +C +D+ +E P +
Sbjct: 2 KALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAAPPLVPGHEF 60
Query: 65 CRIVESVGPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
+V +VG VT F G+ V V C C C+ + N CE L GV +
Sbjct: 61 AGVVVAVGSKVTGFKVGDRV-AVDPNIYCGECFYCRRGRPNLCENLTA--VGVTRN---- 113
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSAGLGAAWN 180
G F+EY VV + K+ E+ L LSC + +
Sbjct: 114 ----GG-----------FAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHG-----LD 153
Query: 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240
+ I G +V++FG G +GL +AQ K GASR+ + N EK E AK G TE ++P+
Sbjct: 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR 213
Query: 241 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH- 299
+ Q K G D E G + A++ G G + GV P+
Sbjct: 214 EDPEAQ---KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVY--APDARVSI 267
Query: 300 --YGLFLSGRTLKGSLFGGWKPKTDLPSLVN------RYLK-KEFMVDEFITHNLLFEDI 350
+ +F T+ GS L+ + V ++H L E++
Sbjct: 268 SPFEIFQKELTIIGSF-----------INPYTFPRAIALLESGKIDVKGLVSHRLPLEEV 316
Query: 351 NQAFNLMKEGKCLRSVIH 368
+A M+ G L+ V+
Sbjct: 317 PEALEGMRSGGALKVVVV 334
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334 |
| >gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 96/369 (26%), Positives = 156/369 (42%), Gaps = 59/369 (15%)
Query: 22 GQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWE-----TQWPQ-----CCRIVE 69
+P +E V++ P P E+ ++V +C SD+ + +P+ V
Sbjct: 7 EKPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVV 66
Query: 70 SVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSDQQTRFS 126
VG GV G+ V+ C C C+ + N CE VLG+ R G
Sbjct: 67 EVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGF--------- 117
Query: 127 IKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISK 186
+EY VV + + + L++ L+ L+ G A A ++
Sbjct: 118 ---------------AEYIVVPADALLVPEGL-SLDQAALVEP-LAIGAHAVRR-AGVTA 159
Query: 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ 246
G TV++ G G +GL V Q AKARGA R+I VD + E+ E A+ G + +N D E V
Sbjct: 160 GDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD--EDVA 216
Query: 247 QVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLS 305
++ +TDG GAD + G+ + A++ G G V +G+ K P
Sbjct: 217 ARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSK-GPVTFPDPEFHKK 274
Query: 306 GRTLKGS---LFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK--EG 360
T+ GS + D P +++ + + ITH FED+ +AF+L + G
Sbjct: 275 ELTILGSRNAT------REDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPG 328
Query: 361 KCLRSVIHM 369
++ +I
Sbjct: 329 GVIKVLIEF 337
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-31
Identities = 93/374 (24%), Positives = 148/374 (39%), Gaps = 64/374 (17%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TAWE---------TQWPQ 63
KA G G+ E + P + ++ + C SD+ T W +
Sbjct: 2 KAFAMLGIGKV-GWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHE 60
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV-MHSDQQ 122
+VE VG V +F G+ V+ I + RG S
Sbjct: 61 AVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQ--------------RGYPSQSGGM 106
Query: 123 T---RFS-IKGKPVYHYCAVSSFSEYTVVHSGCA--VKVSSIAPLEKICLLSCGLSAGLG 176
+FS K F+EY V+ A + E+ +L +S G
Sbjct: 107 LGGWKFSNFKD---------GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFH 157
Query: 177 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
A A+I G TV +FG+G VGL GA+ RGA RII V + P + E AK +G T+ +
Sbjct: 158 GAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIV 216
Query: 237 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQ--------SCCDGWGLAVTL 287
+ N + V+Q I ++T G G D G AL+ S + +G L
Sbjct: 217 DYK-NGDVVEQ-ILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYL 274
Query: 288 GVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTD-LPSLV-NRYLKKEFMVDEFITHNL 345
+P+ + +G+ + +T+ G L G + + + L SL+ + ++ H
Sbjct: 275 PIPREE------WGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLL---THHFF 325
Query: 346 LFEDINQAFNLMKE 359
F+DI +A LMK+
Sbjct: 326 GFDDIEEALMLMKD 339
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351 |
| >gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-30
Identities = 98/378 (25%), Positives = 156/378 (41%), Gaps = 65/378 (17%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR------- 66
KAA + G+PL +E+V V P P ++ ++V +C SD+ + W
Sbjct: 2 KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61
Query: 67 ------IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
VE VG GV EG+ V+ C TCR C+ + N CE G
Sbjct: 62 GHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCE--NARFPG----- 114
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC-GLSAGLGAAW 179
G F+EY +V S VK+ + L+ GL+A
Sbjct: 115 ----IGTDG----------GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKK 160
Query: 180 NVADISKGSTVVIFGLGTVGLSVA-QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
+ + GSTVV+ G+G +G +A Q +A + +I VD + E + A+ G LN
Sbjct: 161 ALPYLDPGSTVVVIGVGGLG-HIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNA 219
Query: 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCD-------GWGLAVTLGVP 290
+D+ V + ++ +T G GAD + +G + A + G+G L
Sbjct: 220 SDD---VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGHGRLPTS 276
Query: 291 KLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDI 350
L P + ++ GSL+G +L +V L + V IT L ED
Sbjct: 277 DLVP----------TEISVIGSLWGTR---AELVEVVA--LAESGKVKVEITKFPL-EDA 320
Query: 351 NQAFNLMKEGKCL-RSVI 367
N+A + ++EG+ R+V+
Sbjct: 321 NEALDRLREGRVTGRAVL 338
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340 |
| >gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-29
Identities = 96/376 (25%), Positives = 147/376 (39%), Gaps = 71/376 (18%)
Query: 13 CKAAV--AWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR---- 66
KAAV +G +P V++V V P P E+ +K+ + +C +D+ A WP +
Sbjct: 1 MKAAVVEEFG-EKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLI 59
Query: 67 -------IVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 118
+V +VGPGV+ G+ V + C C C++ C
Sbjct: 60 GGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCP----------- 108
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV------SSIAPLEKICLLSCGLS 172
+ + + +++ G +F+EY + + + APL L
Sbjct: 109 NQKNSGYTVDG----------TFAEYAIADARYVTPIPDGLSFEQAAPL---------LC 149
Query: 173 AGLGA--AWNVADISKGSTVVIFG----LGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226
AG+ A A + G VVI G LG +G+ Q AKA G R+I +D EK E
Sbjct: 150 AGVTVYKALKKAGLKPGDWVVISGAGGGLGHLGV---QYAKAMGL-RVIAIDVGDEKLEL 205
Query: 227 AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVT 286
AK G F++ ++ V+ V + GGA AL G G V
Sbjct: 206 AKELGADAFVDFKKSD-DVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVC 263
Query: 287 LGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYL-KKEFMVDEFITHNL 345
+G+P + L L G T+ GSL G + + R K V
Sbjct: 264 VGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEALEFAARGKVKPHIQVVP------ 317
Query: 346 LFEDINQAFNLMKEGK 361
ED+N+ F M+EGK
Sbjct: 318 -LEDLNEVFEKMEEGK 332
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 101/418 (24%), Positives = 158/418 (37%), Gaps = 98/418 (23%)
Query: 16 AVAW-GAGQPLVVEEVEVNPP---QPEEIRIKVVCTSLCRSDITAWETQWPQ-------- 63
A+ W G V EV P P + ++V T++C SD+ + P
Sbjct: 3 ALVWHG---KGDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILG 59
Query: 64 --CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
+VE VGP V G+ V+ F C C CK + C+
Sbjct: 60 HEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCD-------------- 105
Query: 122 QTRFSIKGKPVYHY--CAVSSFS-----------EYTVV---HSGCAVKVSSIAPLEKIC 165
T S + +Y + + +S EY V G K+ EK
Sbjct: 106 NTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGP-FKIPDDLSDEKAL 164
Query: 166 LLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225
LS L G AA A++ G TV ++G G VGL A+ AK GA R+I +D PE+ E
Sbjct: 165 FLSDILPTGYHAAEL-AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLE 223
Query: 226 KAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG------------------- 265
A++ E +N + ++ V+ ++ +T G G D + +G
Sbjct: 224 MARSHLGAETINFEEVDDVVE-ALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLE 282
Query: 266 -DTG-MITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLS----------GRTLKGSL 313
D + A+Q+ G +++ +GV YG ++ G TL+
Sbjct: 283 TDRPDALREAIQAVRKGGTVSI-IGV----------YGGTVNKFPIGAAMNKGLTLRM-- 329
Query: 314 FGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM--KEGKCLRSVIHM 369
G + LP L+ E ITH L ED +A+ + KE C++ V+
Sbjct: 330 -GQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP 386
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386 |
| >gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-28
Identities = 112/383 (29%), Positives = 162/383 (42%), Gaps = 70/383 (18%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQWPQCCRI----- 67
KA V AG + EV V P P E+ IKV+ S+C +D+ +E +W Q RI
Sbjct: 2 KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQS-RIKPPLI 60
Query: 68 --------VESVGPGVTEFNEGEHVL--TVFIGECKTCRQCKSDKSNTCE---VLGLERR 114
V VG GVT G++V T + C C QC++ + C+ +LG++
Sbjct: 61 FGHEFAGEVVEVGEGVTRVKVGDYVSAETHIV--CGKCYQCRTGNYHVCQNTKILGVDTD 118
Query: 115 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG 174
G F+EY VV K P E + S +
Sbjct: 119 GC------------------------FAEYVVVPEENLWKNDKDIPPE---IAS--IQEP 149
Query: 175 LGAAWN---VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231
LG A + D+S G +V+I G G +GL AKA GAS +I D NP + E AK G
Sbjct: 150 LGNAVHTVLAGDVS-GKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMG 208
Query: 232 VTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291
+NP + E V +V G D E G+ I L++ G G LG+P
Sbjct: 209 ADVVINPRE--EDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPP 265
Query: 292 LKPEVAAHYGLFLSGRTLKG----SLFGGWKPKTDLPSLVNRYLK-KEFMVDEFITHNLL 346
++ + + G T++G +F W V+ LK + + ITH L
Sbjct: 266 GPVDIDLNNLVIFKGLTVQGITGRKMFETWY-------QVSALLKSGKVDLSPVITHKLP 318
Query: 347 FEDINQAFNLMKEGKCLRSVIHM 369
ED +AF LM+ GKC + V++
Sbjct: 319 LEDFEEAFELMRSGKCGKVVLYP 341
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341 |
| >gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-27
Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 198 VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-G 256
VGL+ Q AKA GA+R+I VD + EK E AK G +N D E + ++ +T G G
Sbjct: 2 VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRD--EDFVERVRELTGGRG 59
Query: 257 ADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGG 316
D +C+G + AL+ G V +G+P P L L T+ GSL GG
Sbjct: 60 VDVVIDCVGAPATLEQALE-LLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGG 118
Query: 317 -WKPKTDLPSLVN 328
+ + L L +
Sbjct: 119 REEFEEALELLAS 131
|
Length = 131 |
| >gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 99/370 (26%), Positives = 146/370 (39%), Gaps = 45/370 (12%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----QCC---- 65
KA V G G V E P + +KV ++C SD+ + P
Sbjct: 2 KAVVFKGPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTPGFVLGHEF 61
Query: 66 --RIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
+VE VGP V G+ V++ F C C C+ +S C GL
Sbjct: 62 VGEVVE-VGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGL------------ 108
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVV--HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 181
F G P + +EY V G +K+ E LL L G A
Sbjct: 109 -FGYAGSPNLD----GAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKR- 162
Query: 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241
A + G TV + G G VGL A+ GA+R+ VD PE+ E+A A G E +N D
Sbjct: 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALG-AEPINFED- 220
Query: 242 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCD---GWGLAVTLGVPKLKPEVA 297
EPV++V + T+G GAD E +G AL D G+ ++GV +
Sbjct: 221 AEPVERV-REATEGRGADVVLEAVG----GAAALDLAFDLVRPGGVISSVGVHTAEEFPF 275
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357
+ TL+ FG ++ P L+ ++ I H + E+ +A+ L
Sbjct: 276 PGLDAYNKNLTLR---FGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLF 332
Query: 358 KEGKCLRSVI 367
+ K L+ V+
Sbjct: 333 DKRKVLKVVL 342
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344 |
| >gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 93/351 (26%), Positives = 138/351 (39%), Gaps = 47/351 (13%)
Query: 24 PLVVEEVEVNPPQPEEIRIKVVCTSLCRSD---ITAWETQWPQ----------CCRIVES 70
LV+EEV V P P E+ +KV +C SD + +VE
Sbjct: 13 LLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDG-GVPTLTKLPLTLGHEIAGTVVE- 70
Query: 71 VGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGK 130
VG GVT F G+ V + C C C+ + N C M I G
Sbjct: 71 VGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------LNQGMPG-----LGIDG- 118
Query: 131 PVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTV 190
F+EY VV + V V P + + + + A ++ G TV
Sbjct: 119 ---------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETV 169
Query: 191 VIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIK 250
++ GLG +GL+ Q AKA GA +I VD EK E AK G E LN D++ +
Sbjct: 170 LVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLDDSP--KDKKA 226
Query: 251 RITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLK 310
GG D F+ +G A ++ G G V +G+ + K V + R +
Sbjct: 227 AGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDLSDLIARELR-II 284
Query: 311 GSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK 361
GS FGG DLP +++ K + + ++I + + +GK
Sbjct: 285 GS-FGG--TPEDLPEVLDLIAKGKL---DPQVETRPLDEIPEVLERLHKGK 329
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338 |
| >gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 98/373 (26%), Positives = 149/373 (39%), Gaps = 50/373 (13%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPP--QPEEIRIKVVCTSLCRSDITAW----ETQWPQ---- 63
+A V G G + VEEV +P +P + I+VV T +C SD+ + T+ P
Sbjct: 2 RATVIHGPGD-IRVEEVP-DPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPTRAPAPIGH 59
Query: 64 -CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 122
+VE VG VT G+ V+ F TC C++ + +C G Q
Sbjct: 60 EFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCV--HGGFWGAFVDGGQ 117
Query: 123 TRFSIKGKPVYHYCAVSSFSEYTVVHS-GCAVKVSSIAP-----LEKICLLSCGLSAGLG 176
+ V + G VKV L + LS + G
Sbjct: 118 GEY------------------VRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHH 159
Query: 177 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
AA A + GSTVV+ G G VGL AK GA RII + + ++ A+ FG T+ +
Sbjct: 160 AA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIV 218
Query: 237 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE 295
E V +V + +T G GAD EC+G + A+ G G +GVP E
Sbjct: 219 -AERGEEAVARV-RELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHGGVE 275
Query: 296 VAAHYGLFLSGRTLKGSLFGGWKP-KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAF 354
+ LF L GG P + LP L++ L L +++ + +
Sbjct: 276 LDVRE-LFFRNVGLA----GGPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGY 330
Query: 355 NLMKEGKCLRSVI 367
M E + ++ ++
Sbjct: 331 RAMDERRAIKVLL 343
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-24
Identities = 86/363 (23%), Positives = 136/363 (37%), Gaps = 55/363 (15%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCC-------- 65
KAAV AG PL EEV V P P E+ IK+ +C +D+ A E W
Sbjct: 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60
Query: 66 ---RIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
+VE VG GV G+ V + +G C C C+ N C+
Sbjct: 61 IVGEVVE-VGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQ-----------KAV 108
Query: 122 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN- 180
T ++ +G ++EY V + V + PL + L C AG+ ++
Sbjct: 109 NTGYTTQG----------GYAEYMVADAEYTVLLPDGLPLAQAAPLLC---AGI-TVYSA 154
Query: 181 --VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
A G V + G+G +G Q A+A G + + +P+K E A+ G E ++
Sbjct: 155 LRDAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDS 213
Query: 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA 298
+ GGAD + AL G G V +G+P+ P
Sbjct: 214 GAELDEQA------AAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPD 266
Query: 299 HYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK 358
+ L + +++ GS GG + K + + N+A+ M+
Sbjct: 267 IFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKVKP------MIETFPLDQANEAYERME 320
Query: 359 EGK 361
+G
Sbjct: 321 KGD 323
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330 |
| >gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-22
Identities = 75/359 (20%), Positives = 120/359 (33%), Gaps = 75/359 (20%)
Query: 20 GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--TQWPQCCR----------- 66
G G+ VEE P P ++ ++V +C SD+ A+ W
Sbjct: 3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWG 61
Query: 67 IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFS 126
V ++GPGV G D+ V GL
Sbjct: 62 RVVALGPGVRGLAVG-------------------DR-----VAGLSGGA----------- 86
Query: 127 IKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL--LSCGLSAGLGAAWNVADI 184
F+EY + + AV + S+ + L C L+ I
Sbjct: 87 --------------FAEYDLADADHAVPLPSLLDGQAFPGEPLGCALNVF-----RRGWI 127
Query: 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 244
G TV + G G +GL Q A A GA R+I +D P + A+ G TE D++E
Sbjct: 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEV--VTDDSEA 185
Query: 245 VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF 303
+ + ++ +T G GAD E +G + A + + G V G + P
Sbjct: 186 IVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDGPRPVPFQTWN 244
Query: 304 LSGRTLKGSLFGGWKPKT-DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK 361
G L ++ + + V + +TH E++ AF +
Sbjct: 245 WKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRP 303
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312 |
| >gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 2e-22
Identities = 95/366 (25%), Positives = 141/366 (38%), Gaps = 63/366 (17%)
Query: 21 AGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQWPQ------------CCRI 67
G + EV V P P E+ IKV+ TS+C +D+ + +W Q
Sbjct: 7 PGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGE 66
Query: 68 VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSDQQTR 124
V +GPGV G++V C C C+ + + C+ + G++ G
Sbjct: 67 VVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGC-------- 118
Query: 125 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA-- 182
F+EY VV + K P E + LG A +
Sbjct: 119 ----------------FAEYAVVPAQNIWKNPKSIPPE-----YATIQEPLGNAVHTVLA 157
Query: 183 -DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241
IS G +V++ G G +GL AKA GA +I D N + E AK G T +NP
Sbjct: 158 GPIS-GKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK- 215
Query: 242 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY 300
E V + + +TDG G D E G + LQ+ G G LG+P K +
Sbjct: 216 -EDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGKVTIDFTN 273
Query: 301 GLFLSGRTLKG----SLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNL 356
+ G T+ G +F W + L + +D ITH F+ + F L
Sbjct: 274 KVIFKGLTIYGITGRHMFETWYTVSRLIQ------SGKLDLDPIITHKFKFDKFEKGFEL 327
Query: 357 MKEGKC 362
M+ G+
Sbjct: 328 MRSGQT 333
|
This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340 |
| >gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 1e-21
Identities = 76/283 (26%), Positives = 108/283 (38%), Gaps = 63/283 (22%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITA-------W--ETQWPQC 64
+A V G +EEV V P P EI +KV +C DI W E Q P
Sbjct: 2 RAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60
Query: 65 -----------CRIVESVGPGVTE--FNEGEHVLTVFIGECKTCRQCKSDKSNTCE---V 108
R+VE +G G E G+ V++ I C CR C + C+ +
Sbjct: 61 KPPMIPGHEFVGRVVE-LGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL 119
Query: 109 LGLERR--GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL 166
G + G M F + +VH KV P E L
Sbjct: 120 YGFQNNVNGGM------------------AEYMRFPKEAIVH-----KVPDDIPPEDAIL 156
Query: 167 ---LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK 223
L+C L A + A+I VV+ G G +GL + A+ + ++I +D E+
Sbjct: 157 IEPLACALHAV-----DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDER 211
Query: 224 CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265
A+ FG LNP + + V + IK +T G G D E G
Sbjct: 212 LALARKFGADVVLNPPEVD--VVEKIKELTGGYGCDIYIEATG 252
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350 |
| >gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-21
Identities = 86/371 (23%), Positives = 136/371 (36%), Gaps = 71/371 (19%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRI------ 67
KA + G Q +EEV P +E+ IKV LC D+ + +P R+
Sbjct: 2 KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYP---RMKYPVIL 58
Query: 68 -------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVM 117
VE VG V F G+ V ++ TC C+S + C+ G E G
Sbjct: 59 GHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGF- 117
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
F+EY V VKV E ++ C +
Sbjct: 118 -----------------------FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGM-VYR 153
Query: 178 AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG---VT 233
A + KG TV++ G G VG+ Q AKA GA ++I V ++ K + + +
Sbjct: 154 GLRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKYADYVIV 212
Query: 234 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK 293
+ +E V K+I GGAD E +G T + +L+S G + + +
Sbjct: 213 G----SKFSEEV----KKI--GGADIVIETVG-TPTLEESLRSL--NMGGKIIQ-IGNVD 258
Query: 294 PEVAAHYGL---FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDI 350
P L L + G + K D+ + L E + I + +I
Sbjct: 259 PSPTYSLRLGYIILKDIEIIGHISAT---KRDVEEALK--LVAEGKIKPVIGAEVSLSEI 313
Query: 351 NQAFNLMKEGK 361
++A +K+
Sbjct: 314 DKALEELKDKS 324
|
Length = 334 |
| >gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 4e-21
Identities = 72/274 (26%), Positives = 106/274 (38%), Gaps = 53/274 (19%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIR-----IKVVCTSLCRSDITAWETQWPQCC--R 66
KA V G G+ + E+ P+P +K++ T++C +D+ + P R
Sbjct: 2 KALVYHGPGK-ISWEDR----PKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGR 56
Query: 67 I--------VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE----VLGLERR 114
I VE VG VT F G+ VL I C TC C+ + CE +LG
Sbjct: 57 ILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLID 116
Query: 115 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYT-VVHSGCA-VKVSSIAPLEKICLLSCGLS 172
G +EY + H+ + K+ E +LS L
Sbjct: 117 GTQ------------------------AEYVRIPHADNSLYKLPEGVDEEAAVMLSDILP 152
Query: 173 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232
G + G TV I G G VGL+ A+ S+II VD + + E AK G
Sbjct: 153 TGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA 212
Query: 233 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265
T +N + + + +TDG G D E +G
Sbjct: 213 THTVNSAKGD--AIEQVLELTDGRGVDVVIEAVG 244
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 8e-21
Identities = 63/235 (26%), Positives = 96/235 (40%), Gaps = 42/235 (17%)
Query: 14 KAAVAWGAG----QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------- 62
KA V G PL + EV V P P E+ IKV +CR+D+ E P
Sbjct: 2 KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLI 61
Query: 63 ---QCCRIVESVGPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMH 118
+ VE+VGPGVT F+ G+ V ++G C CR C+S + N C
Sbjct: 62 PGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLC-----------D 110
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA- 177
+ + T +++ G ++EY V A + E+ L C AG+
Sbjct: 111 NARFTGYTVDG----------GYAEYMVADERFAYPIPEDYDDEEAAPLLC---AGIIGY 157
Query: 178 -AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231
A +A + G + ++G G Q A+ +GA + + E E A+ G
Sbjct: 158 RALKLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELG 211
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329 |
| >gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 9e-21
Identities = 72/274 (26%), Positives = 105/274 (38%), Gaps = 47/274 (17%)
Query: 16 AVAWGAGQPLVVEEVEVNPPQ---PEEIRIKVVCTSLCRSD------ITAWETQWP---Q 63
G P V +V P+ P + +++ T++C SD T E +
Sbjct: 2 KAVV-YGGPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEPGLVLGHE 60
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
VE VG V G+ V+ F C CR CK + C + R G
Sbjct: 61 AMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAG-------- 112
Query: 124 RFSIKGKPVYHYCAVSSF----SEYTVV---HSGCAVKVSSIAPLEKICLLSCGLSAGLG 176
Y Y + + +EY V EK L LS
Sbjct: 113 -------GAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLM--LSDIFP 163
Query: 177 AAWNVADISK---GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
W+ +++ G TV +FG G VGL A A RGASR+ VD PE+ + A++ G
Sbjct: 164 TGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI 223
Query: 234 EFLNPND--NNEPVQQVIKRITDGGADYSFECIG 265
P D + +PV+Q I + GG D + +C+G
Sbjct: 224 ----PIDFSDGDPVEQ-ILGLEPGGVDRAVDCVG 252
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375 |
| >gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-20
Identities = 72/253 (28%), Positives = 105/253 (41%), Gaps = 34/253 (13%)
Query: 129 GKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGS 188
G V+ + +E VV + V + P E+ L + +A L + A+ G
Sbjct: 45 GDRVFCFGP---HAERVVVPANLLVPLPDGLPPERAALTALAATA-LNGVRD-AEPRLGE 99
Query: 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQ- 247
V + GLG VGL AQ AKA GA ++GVD + + E A+A G +PV
Sbjct: 100 RVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA---------DPVAAD 150
Query: 248 VIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEV---AAHYG--- 301
I GAD E G + TAL+ D G V +G LKP + H+
Sbjct: 151 TADEIGGRGADVVIEASGSPSALETALRLLRDR-GRVVLVGWYGLKPLLLGEEFHFKRLP 209
Query: 302 LFLS-----GRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNL 356
+ S GR + W +L L E ++ ITH + FED +A+ L
Sbjct: 210 IRSSQVYGIGRYDRP---RRWTEARNL-EEALDLL-AEGRLEALITHRVPFEDAPEAYRL 264
Query: 357 MKEGK--CLRSVI 367
+ E CL+ V+
Sbjct: 265 LFEDPPECLKVVL 277
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277 |
| >gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 99/389 (25%), Positives = 150/389 (38%), Gaps = 90/389 (23%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWE------------- 58
KAA G+PL EEVE++ P+P E+ +KV +C SD+ W+
Sbjct: 2 KAAAVVEPGKPL--EEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSL 59
Query: 59 ----TQWP-----QCCRIVESVGPGVTEFNEGEHVLTVF--IGECKTCRQCKSDKSNTCE 107
+ P + V +VGP + G+ VL V+ IG C C C + N C
Sbjct: 60 DDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVL-VYPWIG-CGECPVCLAGDENLCA 117
Query: 108 VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV-HSGCAVKVSSIAPLEKICL 166
+ R + ++EY +V HS V + P
Sbjct: 118 --------------KGRALGIFQDGG-------YAEYVIVPHSRYLVDPGGLDPALA-AT 155
Query: 167 LSC-GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225
L+C GL+A A + + VVI G G +GL KA G + II VD + K E
Sbjct: 156 LACSGLTA-YSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLE 214
Query: 226 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGAD-------------YSFECIGDTGMITT 272
AKA G +N +D + +++IK GG D +F+ + G +
Sbjct: 215 AAKAAGADVVVNGSDPDA-AKRIIK-AAGGGVDAVIDFVNNSATASLAFDILAKGGKLV- 271
Query: 273 ALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLK 332
+G TL +P L L T++GS G + +L +L K
Sbjct: 272 ----LVGLFGGEATLPLP----------LLPLRALTIQGSYVGSLEELRELVALA----K 313
Query: 333 KEFMVDEFITHNLLFEDINQAFNLMKEGK 361
+ +T L D+N A + +K GK
Sbjct: 314 AGKLKPIPLTERPL-SDVNDALDDLKAGK 341
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350 |
| >gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 92/390 (23%), Positives = 147/390 (37%), Gaps = 99/390 (25%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQWPQ-------- 63
KA V A L + +V V P P ++ IKV T++C +D I W+ +W Q
Sbjct: 2 KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWD-EWAQKTIPVPMV 60
Query: 64 -----CCRIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKSDKSNTCE---VLGL 111
+VE VG VT F G+ V GE C CR C++ + + C +G+
Sbjct: 61 VGHEFVGEVVE-VGSEVTGFKVGDRV----SGEGHIVCGHCRNCRAGRRHLCRNTKGVGV 115
Query: 112 ERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGL 171
R G +F+EY V+ + K+ P +
Sbjct: 116 NRPG------------------------AFAEYLVIPAFNVWKIPDDIPDD--------- 142
Query: 172 SAGLGA-------------AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218
L A ++++ G V+I G G +G+ A AK GA ++ D
Sbjct: 143 ---LAAIFDPFGNAVHTALSFDLV----GEDVLITGAGPIGIMAAAVAKHVGARHVVITD 195
Query: 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSC 277
N + E A+ G T +N E ++ V+ + G D E G L +
Sbjct: 196 VNEYRLELARKMGATRAVNVAK--EDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNM 253
Query: 278 CDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKG----SLFGGWKPKTDLPSLVNRYLK 332
G +A+ LG+P ++A + G T+KG +F W + L L+
Sbjct: 254 NHGGRIAM-LGIP--PGDMAIDWNKVIFKGLTIKGIYGREMFETWYKMSAL-------LQ 303
Query: 333 KEFMVDEFITHNLLFEDINQAFNLMKEGKC 362
+ ITH +D + F M+ G+
Sbjct: 304 SGLDLSPIITHRFPIDDFQKGFEAMRSGQS 333
|
Length = 341 |
| >gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 6e-20
Identities = 86/378 (22%), Positives = 131/378 (34%), Gaps = 80/378 (21%)
Query: 21 AGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA---W-ETQWPQCC-----RIVES 70
A L E P P+++ IK+ +C SD+ T W T++P IV +
Sbjct: 8 ASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVA 67
Query: 71 VGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKG 129
VG VT+F G+ V + + C TC QCKS + C + + G
Sbjct: 68 VGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCP--------------KGVVTYNG 113
Query: 130 KPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-------AWNVA 182
K ++++ VV K+ L C G V
Sbjct: 114 KYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCA-----GITVYSPLKRNGVG 168
Query: 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242
G V + G+G +G + AKA GA + +P K E A G EF+ D
Sbjct: 169 ---PGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKDPE 224
Query: 243 EPVQQVIKRITDGGADYSFECIGDTGMIT---TALQSCCDGWGLAVTLGVPKLKPEVAAH 299
A S + I DT + S G V +G P +P
Sbjct: 225 AM----------KKAAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAP-EEPLPVPP 273
Query: 300 YGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEF--MVDEFITHNL-------LFEDI 350
+ L +++ GSL GG +KE M+D H + + I
Sbjct: 274 FPLIFGRKSVAGSLIGG---------------RKETQEMLDFAAEHGIKPWVEVIPMDGI 318
Query: 351 NQAFNLMKEGKCL-RSVI 367
N+A +++G R V+
Sbjct: 319 NEALERLEKGDVRYRFVL 336
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 4e-19
Identities = 86/373 (23%), Positives = 140/373 (37%), Gaps = 56/373 (15%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ------WPQCCR-----------I 67
L VE+V V +P+EI I+V +C SDI +ET +P +
Sbjct: 39 LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGV 98
Query: 68 VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSI 127
VE G V F +G+ V + C CR C+S N C+ L FS
Sbjct: 99 VEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE-----------LGFSA 147
Query: 128 KGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL--EKICLLSCGLSAGLGAAWNV---- 181
G +F+EY V++ A +++ + + E + L A+N
Sbjct: 148 DG----------AFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIR 197
Query: 182 -ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240
G+ VV++G G +GL+ AKA GAS++I + + E+ AK G NP
Sbjct: 198 GGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTK 257
Query: 241 --NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
+ ++V++ +T G GAD E G ++ + + + V
Sbjct: 258 MRDCLSGEKVME-VTKGWGADIQVEAAGAPPATIPQMEKSI--AINGKIVYIGRAATTVP 314
Query: 298 AHYGLFLSGRTLKGSLFG--GWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFN 355
H + R + G G PS++ + + + IT E I +A
Sbjct: 315 LHLEVLQVRR---AQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIK 371
Query: 356 LMKEGKCLRSVIH 368
E + I
Sbjct: 372 AASERTDGKITIL 384
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384 |
| >gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-18
Identities = 84/372 (22%), Positives = 130/372 (34%), Gaps = 93/372 (25%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWETQWPQCCR----- 66
KA V G P V++ VEV P+P E+ ++V + D+ + P
Sbjct: 2 KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61
Query: 67 ------IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
+V +VG GVT F G+ V L
Sbjct: 62 GSEAAGVVVAVGSGVTGFKVGD------------------------RVAAL--------- 88
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC-GLSAGLGAAW 179
++EY VV + V + E+ L GL+A L
Sbjct: 89 ------------GGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFD 136
Query: 180 NVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
A + G TV++ G G VG + Q AKA GA ++ V ++ EK E K G +N
Sbjct: 137 -RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINY 194
Query: 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
+ E + ++ +T G G D + +G +L + G G V++G P V
Sbjct: 195 RE--EDFVEQVRELTGGKGVDVVLDTVGGD-TFAASLAALAPG-GRLVSIGALSGGPPVP 250
Query: 298 AH-YGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNL 356
+ L TL+G G P+ E + + F+L
Sbjct: 251 LNLLPLLGKRLTLRGVTLGSRDPEALA------------------------EALAELFDL 286
Query: 357 MKEGKCLRSVIH 368
+ GK L+ VI
Sbjct: 287 LASGK-LKPVID 297
|
Length = 326 |
| >gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 69/262 (26%), Positives = 106/262 (40%), Gaps = 38/262 (14%)
Query: 27 VEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQWPQCCR---------IVESVGPGVT 76
+ EV P P E+ IKV +C SD+ ++ P + VGP V
Sbjct: 16 LREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVE 75
Query: 77 EFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHY 135
+ G+ V++ C C C+ N C R+G+
Sbjct: 76 GWKVGDRVVSETTFSTCGRCPYCRRGDYNLCP----HRKGI-----------------GT 114
Query: 136 CAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL 195
A F+EY +V ++ LE L L+ + A + I G TVV+FG
Sbjct: 115 QADGGFAEYVLVPEESLHELPENLSLEAAALTE-PLAVAVHAVAERSGIRPGDTVVVFGP 173
Query: 196 GTVGLSVAQGAKARGASRII-GVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD 254
G +GL AQ AK +GA+ ++ G + + + + AK G N E + +++ ITD
Sbjct: 174 GPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADA---VNGGEEDLAELVNEITD 230
Query: 255 G-GADYSFECIGDTGMITTALQ 275
G GAD EC G + AL+
Sbjct: 231 GDGADVVIECSGAVPALEQALE 252
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306 |
| >gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-17
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 39/229 (17%)
Query: 37 PEEIRIKVVCTSLCRSDITAWETQWPQCCRI---------VESVGPGVTEFNEGEHVLTV 87
+++ +KV + LC SDI I VE+VG GV + + G+ V V
Sbjct: 25 QDDVLVKVASSGLCGSDIPRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACV 84
Query: 88 FIGECKTCRQCKSDKSNTC---EVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEY 144
+ C TC +C + C + +G R G +EY
Sbjct: 85 PLLPCFTCPECLRGFYSLCAKYDFIGSRRDG------------------------GNAEY 120
Query: 145 TVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQ 204
VV + + P+E + ++ GL A+++A +G V+I G GT+GL Q
Sbjct: 121 IVVKRKNLFALPTDMPIEDGAFIE-PITVGL-HAFHLAQGCEGKNVIIIGAGTIGLLAIQ 178
Query: 205 GAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP-VQQVIKRI 252
A A GA + +D N EK AK+ G + N + + P +Q V++ +
Sbjct: 179 CAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLREL 227
|
Length = 347 |
| >gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 5e-17
Identities = 67/282 (23%), Positives = 102/282 (36%), Gaps = 69/282 (24%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP--------- 62
KA V G G P L ++ P P+E+ ++V +L D+
Sbjct: 2 KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61
Query: 63 --QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVM 117
+VE+VGPGVT G+ V+ C C C + + N C +LG G
Sbjct: 62 GSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGY 121
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS----- 172
+EY V A + I LS
Sbjct: 122 ------------------------AEYVAVP---ARNLLPIPD---------NLSFEEAA 145
Query: 173 -AGL--GAAWNV----ADISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKC 224
A L AW++ A + G TV++ G G+ VG + Q AK GA +I + +K
Sbjct: 146 AAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKL 204
Query: 225 EKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265
E+AK G ++ E + ++ +T G D E +G
Sbjct: 205 ERAKELGADYVIDY--RKEDFVREVRELTGKRGVDVVVEHVG 244
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342 |
| >gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 86/359 (23%), Positives = 141/359 (39%), Gaps = 68/359 (18%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT------AWETQWP-----QCCRIVESVGP 73
L + E V P P E+ ++V SL D+ + P V +VG
Sbjct: 15 LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGE 74
Query: 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY 133
GVT F G+ V+ F D+++ LG GV+
Sbjct: 75 GVTRFKVGDRVVPTFFPNWLDGPPTAEDEASA---LGGPIDGVL---------------- 115
Query: 134 HYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN----VADISKGST 189
+EY V+ V+ E+ L C AGL AWN + + G T
Sbjct: 116 --------AEYVVLPEEGLVRAPDHLSFEEAATLPC---AGL-TAWNALFGLGPLKPGDT 163
Query: 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVI 249
V++ G G V L Q AKA GA R+I ++ EK E+AKA G +N + ++V
Sbjct: 164 VLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRTTPDWGEEV- 221
Query: 250 KRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGV---PKLKPEVAAHYGLFLS 305
++T G G D+ E +G G + ++++ G G+ +G + + L
Sbjct: 222 LKLTGGRGVDHVVE-VGGPGTLAQSIKAVAPG-GVISLIGFLSGFEAPVLLLP---LLTK 276
Query: 306 GRTLKGSLFGGWKPKTDLPSLVNRYLKKEFM---VDEFITHNLLFEDINQAFNLMKEGK 361
G TL+G G + ++ NR ++ + +D FE+ +A+ ++ G
Sbjct: 277 GATLRGIAVG---SRAQFEAM-NRAIEAHRIRPVIDRVFP----FEEAKEAYRYLESGS 327
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336 |
| >gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 67/302 (22%), Positives = 109/302 (36%), Gaps = 62/302 (20%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITA-------WETQWPQ--- 63
+AAV PLVV +V P P ++ +KV+ +C SD+ A +
Sbjct: 2 RAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLM 59
Query: 64 ------------CCRIVESVGPGV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG 110
C +V+ GPG + G V ++ + C C S
Sbjct: 60 DLGADIVLGHEFCGEVVD-YGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPE----- 113
Query: 111 LERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCG 170
A ++EY ++ ++V +E L
Sbjct: 114 --------------------------APGGYAEYMLLSEALLLRVPDGLSMEDAALTE-P 146
Query: 171 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230
L+ GL A A ++ G ++ G G +GL+V KARG I+ D +PE+ A A
Sbjct: 147 LAVGLHAV-RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM 205
Query: 231 GVTEFLNPNDNNEP--VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLG 288
G ++P ++ + R FEC+G G+I ++ G G V +G
Sbjct: 206 GADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVG 264
Query: 289 VP 290
V
Sbjct: 265 VC 266
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 4e-15
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 32/231 (13%)
Query: 68 VESVGPGVTEFNEGEH-------VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
V ++ G T ++G V +V + C C +C+ C+ L R H
Sbjct: 10 VVALRGGFTPADDGVPLRLGQRVVWSVTVP-CGRCFRCRRGLPQKCDSL----RKYGH-- 62
Query: 121 QQTRFSIKGKPVYHYCAVS-SFSEYTVVHSGCA-VKVSSIAPLEKICLLSCGLSAGLGAA 178
+ + +S ++E+ + +G A V V P C + + A
Sbjct: 63 ---------EALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL 113
Query: 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
D+ KG V++ G G +GL+ A A A GA+R++ D +P++ E A +FG T P
Sbjct: 114 EAAGDL-KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEP 172
Query: 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLG 288
E + + + +G G D + E G T + L+S G G AV G
Sbjct: 173 ----EVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAG 218
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280 |
| >gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-13
Identities = 88/376 (23%), Positives = 146/376 (38%), Gaps = 57/376 (15%)
Query: 20 GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ------------CCRI 67
G+P+V VE+ ++ +KV +C +D++ + R+
Sbjct: 6 EPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRV 65
Query: 68 VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSI 127
+++ + G+ V+ + C C CK+ + C R M + +
Sbjct: 66 IQAGAGAASWI--GKAVIVPAVIPCGECELCKTGRGTIC------RAQKMPGN-----DM 112
Query: 128 KGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIA----PLEKICLLSCGLSAGLGAAWNV 181
+G F+ + VV + C V + +A PLE + +++ ++ AA
Sbjct: 113 QG----------GFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQ- 161
Query: 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND- 240
A + KG V++ G G VG + Q AKA GA+ ++ +D +PEK E K FG LNP D
Sbjct: 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKDK 220
Query: 241 NNEPVQQVIKRITDGGADYS-----FECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE 295
+ V+++IK S FEC G +AL G L V +G K E
Sbjct: 221 SAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVV-VGYTMAKTE 279
Query: 296 VAAHYGLFLSGRTLKGSLFGGWKPKTDL-PSLVNRYLKKEFMVDEFITHNLLFEDINQAF 354
+ R L G W D P+ ++ L + + F+ L + I F
Sbjct: 280 YRLSNLMAFHARAL-----GNWGCPPDRYPAALDLVLDGKIQLGPFVERRPL-DQIEHVF 333
Query: 355 NLMKEGKCLRSVIHMP 370
K R I P
Sbjct: 334 AAAHHHKLKRRAILTP 349
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349 |
| >gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 72/326 (22%), Positives = 122/326 (37%), Gaps = 66/326 (20%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP--QCCRI---- 67
KA G PL + E +V P P E+ IKV +C SD E P R+
Sbjct: 2 KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61
Query: 68 ----VESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHS 119
+++VG GV+ + G+ V + G C TC C+ CE V G+ R G
Sbjct: 62 VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDG---- 117
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV------SSIAPLEKICLLSCGLSA 173
++EY + + ++ + APL L A
Sbjct: 118 --------------------GYAEYMLAPAEALARIPDDLDAAEAAPL---------LCA 148
Query: 174 GLGAAWNV---ADISKGSTVVIFGLGTVG-LSVAQGAKARGASRIIGVDTNPEKCEKAKA 229
G+ +N + G V + G+G +G L+V Q A G R + + +K + A+
Sbjct: 149 GV-TTFNALRNSGAKPGDLVAVQGIGGLGHLAV-QYAAKMGF-RTVAISRGSDKADLARK 205
Query: 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289
G +++ + E V + ++ + GGA + I+ + G + LG
Sbjct: 206 LGAHHYIDTSK--EDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGA 260
Query: 290 PKLKPEVAAHYGLFLSGRTLKGSLFG 315
V+ L + +++ G G
Sbjct: 261 AGEPVAVSP-LQLIMGRKSIHGWPSG 285
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333 |
| >gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 69/265 (26%), Positives = 97/265 (36%), Gaps = 39/265 (14%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRI-------------VESV 71
L VEE P P E+R++V +C SD+ ++ R+ VE+V
Sbjct: 9 LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV 68
Query: 72 GPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGK 130
GPGVT G+ V V C TC C++ + N C RF G
Sbjct: 69 GPGVTGLAPGQRV-AVNPSRPCGTCDYCRAGRPNLCL--------------NMRF--LGS 111
Query: 131 PVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTV 190
+ F EY VV + V + L L+ L+ L A N A G V
Sbjct: 112 AMRFPHVQGGFREYLVVDASQCVPLPDGLSLR-RAALAEPLAVALHAV-NRAGDLAGKRV 169
Query: 191 VIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP-NDNNEPVQQVI 249
++ G G +G V A+ GA+ I+ D A+A G E +N D
Sbjct: 170 LVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADK 229
Query: 250 KRITDGGADYSFECIGDTGMITTAL 274
D FE G + +AL
Sbjct: 230 GDF-----DVVFEASGAPAALASAL 249
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 6e-13
Identities = 66/258 (25%), Positives = 100/258 (38%), Gaps = 69/258 (26%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQWP---QCCRIVESVGPGV 75
L E+V V P P E+ ++ + RS + + + +VE+VGPGV
Sbjct: 14 LEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPLPFVLGVEGAGVVEAVGPGV 73
Query: 76 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHY 135
T F G+ V Y
Sbjct: 74 TGFKVGDRV-----------------------------------------------AYAG 86
Query: 136 CAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAG--LGAAWNVADISKGSTVVI 192
+++EY VV + VK+ I+ LL GL+A L + V G TV++
Sbjct: 87 -PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVK---PGDTVLV 142
Query: 193 FGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR 251
G VGL + Q AKA GA +IG ++ EK E A+A G +N D + + ++
Sbjct: 143 HAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRDEDFVER--VRE 199
Query: 252 ITDG-GADYSFECIG-DT 267
IT G G D ++ +G DT
Sbjct: 200 ITGGRGVDVVYDGVGKDT 217
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320 |
| >gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 70/276 (25%), Positives = 112/276 (40%), Gaps = 39/276 (14%)
Query: 18 AWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD--------ITAWETQWP-----Q 63
AW G L ++ ++ P P ++R+++ +C SD + + P +
Sbjct: 21 AWLVGVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHE 80
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
C I+E VG V G+ V C C CK + N C
Sbjct: 81 CAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCP---------------- 124
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD 183
P H S + V + K+ LE+ + LS G+ A A+
Sbjct: 125 EMKFFATPPVH----GSLANQVVHPADLCFKLPENVSLEEGAMCE-PLSVGVHAC-RRAN 178
Query: 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243
I + V++ G G +GL A+A GA RI+ VD + E+ AK G E + + N E
Sbjct: 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIE 238
Query: 244 PVQQVIKRITD---GGADYSFECIGDTGMITTALQS 276
V+ ++ I GG D SF+C+G ++TAL++
Sbjct: 239 DVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEA 274
|
Length = 364 |
| >gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-12
Identities = 81/383 (21%), Positives = 125/383 (32%), Gaps = 90/383 (23%)
Query: 14 KAAVAWGA-GQPLVVEEVEVNPPQPEEIRIKVVCTSL----CRSDITAWETQWPQ----- 63
KAAV G G LVV +V V P P+E+ +KV +L + + +P
Sbjct: 2 KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFIPSYPAILGCD 61
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
V VG GVT F G+ V V G +
Sbjct: 62 FAGTVVEVGSGVTRFKVGDRVAGF--------------------VHGGNPNDPRNG---- 97
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA---------G 174
+F EY V + K+ E+ L GL G
Sbjct: 98 ----------------AFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLG 141
Query: 175 LGAAW-NVADISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKC-----EKA 227
L + SKG V+I+G + VG Q AK G ++I +
Sbjct: 142 LPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITT------ASPKNFDLV 194
Query: 228 KAFGVTEFLNPNDNNEP-VQQVIKRITDGGADYSFECIGDTG---MITTALQSCCDGWGL 283
K+ G D ++P V + I+ T G Y+ +CI + AL G L
Sbjct: 195 KSLGADAVF---DYHDPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGG-KL 250
Query: 284 AVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITH 343
L VP+ L ++FG + + +YL + + H
Sbjct: 251 VSLLPVPEETEPRKG----VKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPH 306
Query: 344 NLL-----FEDINQAFNLMKEGK 361
+ E + + +L+++GK
Sbjct: 307 PVRVVEGGLEGVQEGLDLLRKGK 329
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339 |
| >gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 6e-12
Identities = 93/382 (24%), Positives = 142/382 (37%), Gaps = 90/382 (23%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR------- 66
KAAV VV E + P + E +K+ +C +D+ +
Sbjct: 2 KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTGRILGHEG 61
Query: 67 --IVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
IV+ VGPGVT G+ V + F C C C + + C R V ++
Sbjct: 62 IGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLC-------RSVKNAG--- 111
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV---------SSIAPLEKICLLSCGLSAG 174
+++ G +E +V + AVKV SSI +C AG
Sbjct: 112 -YTVDG----------GMAEQCIVTADYAVKVPEGLDPAQASSI---------TC---AG 148
Query: 175 LGA--AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232
+ A V+ I G + I+G G +G Q AK +++I VD N +K AK G
Sbjct: 149 VTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGA 208
Query: 233 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD-----GWGLAVTL 287
+N E V ++I+ GGA + T + A D G +AV L
Sbjct: 209 DLTINSKR-VEDVAKIIQ-EKTGGAHAAVV----TAVAKAAFNQAVDAVRAGGRVVAVGL 262
Query: 288 GVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLL- 346
+ + L L G + GSL G + L++ F +F +
Sbjct: 263 PPESMDLSIPR---LVLDGIEVVGSLVGTRQD-----------LEEAF---QFGAEGKVV 305
Query: 347 -------FEDINQAFNLMKEGK 361
EDIN F+ M++GK
Sbjct: 306 PKVQLRPLEDINDIFDEMEQGK 327
|
Length = 338 |
| >gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 7e-12
Identities = 65/284 (22%), Positives = 93/284 (32%), Gaps = 98/284 (34%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPE----EIRIKVVCTSLCRSDITAWETQWPQ------ 63
KA G P V+E +V P PE E+ +KV + D+ E
Sbjct: 2 KAVRIHEYGGPEVLELADV--PTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTL 59
Query: 64 -------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV 116
+V +VGPGVT F G+ EV G+
Sbjct: 60 PLIPGHDVAGVVVAVGPGVTGFKVGD------------------------EVFGM----- 90
Query: 117 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS---- 172
T F+ G +++EY VV +A LS
Sbjct: 91 ------TPFTRGG----------AYAEYVVVP------ADELALKPA------NLSFEEA 122
Query: 173 -----AGLGAAWN----VADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPE 222
AGL AW + + G TV+I G G VG Q AKARGA R+I +
Sbjct: 123 AALPLAGL-TAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIAT-ASAA 179
Query: 223 KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266
+ ++ G E ++ + GG D + +G
Sbjct: 180 NADFLRSLGADEVIDYTK-----GDFERAAAPGGVDAVLDTVGG 218
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309 |
| >gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 7e-12
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 37/132 (28%)
Query: 37 PEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEGEHVLT 86
P E+ ++V +C SD+ + + P IVE VGPGVT G+ V+
Sbjct: 1 PGEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60
Query: 87 VFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 143
+ C C C+ + N C LG+ G F+E
Sbjct: 61 YPLIPCGKCAACREGRENLCPNGKFLGVHLDG------------------------GFAE 96
Query: 144 YTVVHSGCAVKV 155
Y VV + V +
Sbjct: 97 YVVVPARNLVPL 108
|
This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108 |
| >gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 58/255 (22%), Positives = 90/255 (35%), Gaps = 61/255 (23%)
Query: 25 LVVEEVEVNPPQPEEIRIKVV------CTSLCRSDITAWETQWP-----QCCRIVESVGP 73
L +EE+ V P E+ I+V ++ R P + +VE+VG
Sbjct: 15 LRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGA 74
Query: 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY 133
GVT F G+ V + Q Y
Sbjct: 75 GVTGFAVGDRVSVI----------------------------PAADLGQ----------Y 96
Query: 134 HYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVI 192
A EY +V + VK+ ++ +E L L+A A + G +V+I
Sbjct: 97 GTYA-----EYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVEL-AGLRPGDSVLI 150
Query: 193 FGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR 251
+VGL+ Q A A GA +I EK + A G + ++ E + + R
Sbjct: 151 TAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTDE--EDLVAEVLR 207
Query: 252 ITDG-GADYSFECIG 265
IT G G D F+ +G
Sbjct: 208 ITGGKGVDVVFDPVG 222
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328 |
| >gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 6e-11
Identities = 66/275 (24%), Positives = 102/275 (37%), Gaps = 82/275 (29%)
Query: 14 KAAV--AWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI--TAWETQW-PQ----- 63
KA V G + LV+EEV P P E+RI+V + D+ + Q P
Sbjct: 2 KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVP 61
Query: 64 ---CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
+VE+VG GVT F G+ V+ L +G
Sbjct: 62 GSEVAGVVEAVGEGVTGFKVGDRVV------------------------ALTGQG----- 92
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180
F+E VV + + E+ +A L +
Sbjct: 93 -------------------GFAEEVVVPAAAVFPLPDGLSFEE--------AAALPVTYG 125
Query: 181 V--------ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231
A + G TV++ G G VGL+ Q AKA GA R+I ++ EK A+A G
Sbjct: 126 TAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALG 184
Query: 232 VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265
++ D +++ +K +T G G D ++ +G
Sbjct: 185 ADHVIDYRD--PDLRERVKALTGGRGVDVVYDPVG 217
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323 |
| >gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 67/266 (25%), Positives = 98/266 (36%), Gaps = 68/266 (25%)
Query: 18 AW-----GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQWPQCCRI--- 67
AW GA L +EE+E+ P E+ +KV L D + AW +
Sbjct: 3 AWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGV 62
Query: 68 -----VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 122
V +VG VT + G+ R H+
Sbjct: 63 DGAGVVVAVGAKVTGWKVGD-------------------------------RVAYHAS-- 89
Query: 123 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNV 181
+ G SF+EYTVV + + + S++ E L GL+A A +
Sbjct: 90 --LARGG----------SFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTA-YQALFKK 136
Query: 182 ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240
I G T++I G G VG Q AK G R+I + E K+ G ++ ND
Sbjct: 137 LRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGADHVIDYND 194
Query: 241 NNEPVQQVIKRITDG-GADYSFECIG 265
+ V + IK IT G G D + +G
Sbjct: 195 ED--VCERIKEITGGRGVDAVLDTVG 218
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325 |
| >gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 44/242 (18%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----------QCCRIVESVGPG 74
L +EE + P E+R+KV +C SD + P + ++++VG G
Sbjct: 12 LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 71
Query: 75 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVMHSDQQTRFSIKGKP 131
V GE V + C C C K N C VLG+ R G
Sbjct: 72 VDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDG---------------- 115
Query: 132 VYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTV 190
FSEY VV + A ++ +IA + + ++A + ++
Sbjct: 116 --------GFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGRTGP---TEQDVA 164
Query: 191 VIFGLGTVGLSVAQGAK-ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVI 249
+I+G G VGL++ Q K +I D E+ AK G + N+ EP+ + +
Sbjct: 165 LIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVI--NNAQEPLGEAL 222
Query: 250 KR 251
+
Sbjct: 223 EE 224
|
Length = 339 |
| >gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 8e-10
Identities = 66/282 (23%), Positives = 99/282 (35%), Gaps = 96/282 (34%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQP--EEIRIKVVCTSLCRSDITAWETQWP--------- 62
KA V G P V+E EV P P E+ I+V + R+D+ + +P
Sbjct: 2 KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDIL 61
Query: 63 --QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
+ +V +VGPGVT + G+ V L
Sbjct: 62 GLEVAGVVVAVGPGVTGWKVGD------------------------RVCAL--------- 88
Query: 121 QQTRFSIKGKPVYHYCAVSS--FSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS----AG 174
++ ++EY VV +G + V GLS A
Sbjct: 89 -----------------LAGGGYAEYVVVPAGQLLPVPE------------GLSLVEAAA 119
Query: 175 LGAAW--------NVADISKGSTVVIFGLGT--VGLSVAQGAKARGASRIIGVDTNPEKC 224
L + + + G TV+I G G VG + Q AKA GA R+I + EK
Sbjct: 120 LPEVFFTAWQNLFQLGGLKAGETVLIHG-GASGVGTAAIQLAKALGA-RVIATAGSEEKL 177
Query: 225 EKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265
E +A G +N + + +K T G G D + +G
Sbjct: 178 EACRALGADVAINYRTED--FAEEVKEATGGRGVDVILDMVG 217
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323 |
| >gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 56/264 (21%), Positives = 93/264 (35%), Gaps = 54/264 (20%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVES 70
+T K +G L + E P+ ++ IKV + R+D + ++P
Sbjct: 5 VTLKG---FGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP------- 54
Query: 71 VGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM--HSDQQTRFSIK 128
PG +E +LGLE G + RF
Sbjct: 55 -PPGSSE------------------------------ILGLEVAGYVEDVGSDVKRFKE- 82
Query: 129 GKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN----VADI 184
G V ++EY V H G + + E+ + + AW D+
Sbjct: 83 GDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEE----AAAIPEAFLTAWQLLKKHGDV 138
Query: 185 SKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243
KG +V+I G VG + AQ A+ GA+ II ++ EK + K + D
Sbjct: 139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT-SSEEKVDFCKKLAAIILIRYPDEEG 197
Query: 244 PVQQVIKRITDGGADYSFECIGDT 267
+V K + G + +C+G +
Sbjct: 198 FAPKVKKLTGEKGVNLVLDCVGGS 221
|
Length = 334 |
| >gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 83/378 (21%), Positives = 124/378 (32%), Gaps = 96/378 (25%)
Query: 16 AVAWGAGQPLVVEEVEVNPPQPE----EIRIKVVCTSLCRSD--ITAWETQW------PQ 63
V G P V+ +EV P P E+ +KV S+ D + + P
Sbjct: 1 VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60
Query: 64 C-----CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 118
V +VG GVT F G+ V L + G
Sbjct: 61 IPGMDFAGEVVAVGSGVTRFKVGDEVFGR---------------------LPPKGGG--- 96
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
+ +EY V SG A K ++ E L GL+A L A
Sbjct: 97 ---------------------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTA-LQA 134
Query: 178 AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
+ + G V+I G G VG Q AKA GA + GV + E ++ G E +
Sbjct: 135 LRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVC-STRNAELVRSLGADEVI 192
Query: 237 NPNDNNEPVQQVIKRITDGGA-DYSFECIGDTGMITTALQSCCDGW---GLAVTLGVP-- 290
+ + + G D F+ +G++ +L G V++G
Sbjct: 193 DYTTED-----FVALTAGGEKYDVIFDAVGNS---PFSLYRASLALKPGGRYVSVGGGPS 244
Query: 291 -KLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDE-----FITHN 344
L + L GR LK F DL L + +V+E I
Sbjct: 245 GLLLVLLLLPLTLGGGGRRLK--FFLAKPNAEDL-----EQLAE--LVEEGKLKPVIDSV 295
Query: 345 LLFEDINQAFNLMKEGKC 362
ED +A+ +K G+
Sbjct: 296 YPLEDAPEAYRRLKSGRA 313
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 66/259 (25%), Positives = 92/259 (35%), Gaps = 58/259 (22%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSD---ITA-WETQWP-----QCCRIVESVGPGV 75
L VE+V+ P P E+ I+V + D I A P + +VE VG V
Sbjct: 14 LKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPMPHIPGAEFAGVVEEVGDHV 73
Query: 76 TEFNEGEHVLT---VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPV 132
+G+ V+ VF G TC C S C G +
Sbjct: 74 KGVKKGDRVVVYNRVFDG---TCDMCLSGNEMLCRNGG-------------IIGVVSNGG 117
Query: 133 YHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-----AWNVADISKG 187
Y +EY VV K+ E S + A A A + G
Sbjct: 118 Y--------AEYIVVPEKNLFKIPDSISDE------LAASLPVAALTAYHALKTAGLGPG 163
Query: 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ 246
TVV+FG G G+ Q AK GA +I V + K FG E ++ + V+
Sbjct: 164 ETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSRK----DWLKEFGADEVVDY----DEVE 214
Query: 247 QVIKRITDGGADYSFECIG 265
+ +K IT AD +G
Sbjct: 215 EKVKEIT-KMADVVINSLG 232
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 49/186 (26%), Positives = 67/186 (36%), Gaps = 42/186 (22%)
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTC-RQCKSDKSNTCEVLGLERRGVMHSDQQ 122
R+V VG GV GE VL R D + +G ER G
Sbjct: 86 VGRVVA-VGEGVDTARIGERVL------VDPSIRDPPEDDPADIDYIGSERDG------- 131
Query: 123 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV- 181
F+EYTVV + A V+S ++ C S A N+
Sbjct: 132 -----------------GFAEYTVVPAENAYPVNSPLSDVELATFPCSYS----TAENML 170
Query: 182 --ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
A + G TV++ G G VG ++ Q AK RGA +I V K E +A G +
Sbjct: 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV-AGAAKEEAVRALGADTVILR 228
Query: 239 NDNNEP 244
+
Sbjct: 229 DAPLLA 234
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350 |
| >gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 109 LGLERRGVMHS--DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL 166
G E G + + + T F + G V + +F+EY VV + AV V + P E + L
Sbjct: 64 CGFEGVGEVVAVGEGVTDFKV-GDAVA-TMSFGAFAEYQVVPARHAVPVPELKP-EVLPL 120
Query: 167 LSCGLSAGLGAAWNVADISKGSTV-VIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225
L GL+A + A V ++ G TV V G G Q AK G +IG ++ EK E
Sbjct: 121 LVSGLTASI-ALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAG-CHVIGTCSSDEKAE 178
Query: 226 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265
K+ G +N E + +V+K+ G D +E +G
Sbjct: 179 FLKSLGCDRPINY--KTEDLGEVLKKEYPKGVDVVYESVG 216
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329 |
| >gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-08
Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 22/236 (9%)
Query: 42 IKVVCTSLCRSD--ITAWETQWP-------QCCRIVESVGPGVTEFNEGEHVLTVFIGEC 92
+KVV T++C SD + T P + V G V G+ V F C
Sbjct: 38 LKVVTTNICGSDQHMVRGRTTAPTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIAC 97
Query: 93 KTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA 152
CR CK + C + R G + + G+ Y + F+ A
Sbjct: 98 GRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQA 157
Query: 153 VKVSSIAPLEKI---CLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKAR 209
LEKI +LS G A A + GSTV I G G VGL+ A A+
Sbjct: 158 --------LEKIRDLTMLSDIFPTGYHGAVT-AGVGPGSTVYIAGAGPVGLAAAASAQLL 208
Query: 210 GASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265
GA+ +I D NP + +A++FG E ++ + + +Q+ + + + D + +C+G
Sbjct: 209 GAAVVIVGDLNPARLAQARSFGC-ETVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393 |
| >gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 72/328 (21%), Positives = 120/328 (36%), Gaps = 38/328 (11%)
Query: 6 KQPQVITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP 62
K P+ + A W A P L E++ +K++ +C SD+ + +W
Sbjct: 3 KSPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWG 62
Query: 63 ----------QCCRIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGL 111
+ IV +G V +F EG+ V + V +G CK+C C D N C +
Sbjct: 63 FTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIF 122
Query: 112 ERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGL 171
+ H + +S+ VV ++ PL+ L C
Sbjct: 123 TYNSIGHDGTKN--------------YGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAG 168
Query: 172 SAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF 230
G + + GLG +G + KA G ++ + ++ K ++A
Sbjct: 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRL 227
Query: 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290
G FL D E ++ I G DY + + + L G +TLG+P
Sbjct: 228 GADSFLVSTD-PEKMKAAI-----GTMDYIIDTVSAVHALGPLL-GLLKVNGKLITLGLP 280
Query: 291 KLKPEVAAHYGLFLSGRTLKGSLFGGWK 318
+ KP + L L + + GS GG K
Sbjct: 281 E-KPLELPIFPLVLGRKLVGGSDIGGIK 307
|
Length = 360 |
| >gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-07
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 31/195 (15%)
Query: 92 CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC 151
C C+ C S N C RF G +Y F+ Y VV +
Sbjct: 93 CGHCKYCLSHNENQCT--------------TMRFF--GSAMYFPHVDGGFTRYKVVDTAQ 136
Query: 152 AVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA 211
+ A EK+ + L+ + AA D+ +G V + G+G +G + K GA
Sbjct: 137 CIPYPEKAD-EKVMAFAEPLAVAIHAAHQAGDL-QGKRVFVSGVGPIGCLIVAAVKTLGA 194
Query: 212 SRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMIT 271
+ I+ D +P A+ G + +NP +++ + K G D SFE G
Sbjct: 195 AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEK----GYFDVSFEVSGH----P 246
Query: 272 TALQSCCDGWGLAVT 286
+++ +C L VT
Sbjct: 247 SSINTC-----LEVT 256
|
Length = 343 |
| >gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 46/213 (21%), Positives = 74/213 (34%), Gaps = 28/213 (13%)
Query: 175 LGAAWNVAD-----ISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKCEKAK 228
LG A+ + + + S V++ G T VG Q AK + + E K
Sbjct: 135 LGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNK 194
Query: 229 AFGVTEFLN--PNDNNEPVQQVIKRITDGGA-DYSFECIGDT---GMITTALQSCCDGWG 282
G F++ + + ++ V++ + G D +C+G I + L+ G
Sbjct: 195 KLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKN-G 253
Query: 283 LAVTL-GVPKL---KPEVAAHYGLFLSGRTLKGSLFGGW---------KPKTDLPSLVNR 329
VT+ G K K + + R L GSL G W P D
Sbjct: 254 HYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSL-GLWSYNYQFFLLDPNADWIEKCAE 312
Query: 330 YLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC 362
+ V I FED +AF +K +
Sbjct: 313 LIADG-KVKPPIDSVYPFEDYKEAFERLKSNRA 344
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352 |
| >gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 59/227 (25%), Positives = 93/227 (40%), Gaps = 43/227 (18%)
Query: 37 PEEIRIKVVCTSLCRSDITAWE-----TQWPQC------CRIVESVGPGVTEFNEGEHV- 84
PE++ IKV+ +C +D+ + + +P +VE VG V++F G+ V
Sbjct: 34 PEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVE-VGSDVSKFTVGDIVG 92
Query: 85 LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEY 144
+ V +G C C CKSD C +R ++D T GKP F+
Sbjct: 93 VGVIVGCCGECSPCKSDLEQYC-----NKRIWSYNDVYT----DGKPTQ-----GGFASA 138
Query: 145 TVVHSGCAVKV-SSIAPLEKICLLSCGLSA-------GLGAAWNVADISKGSTVVIFGLG 196
VV VK+ +AP + LL G++ GL G I GLG
Sbjct: 139 MVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGL--------KQSGLRGGILGLG 190
Query: 197 TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243
VG + AKA G + ++ ++ E + G ++L +D E
Sbjct: 191 GVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAE 237
|
Length = 357 |
| >gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 190 VVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 232
VV+ GLG +G S A+ + RG A ++ VD + E A + GV
Sbjct: 6 VVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGV 49
|
Length = 735 |
| >gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 68/305 (22%), Positives = 114/305 (37%), Gaps = 50/305 (16%)
Query: 39 EIRIKVVCTSLCRSDITAWETQWP----------QCCRIVESVGPGVTEFNEGEHV-LTV 87
++ +K++ +C SD+ + W + I VG VT+F EG+ V + V
Sbjct: 33 DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGV 92
Query: 88 FIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSS------- 140
IG C++C C D N C K V+ Y + SS
Sbjct: 93 IIGSCQSCESCNQDLENYCP----------------------KVVFTYNSRSSDGTRNQG 130
Query: 141 -FSEYTVVHSGCAVKVSSIAPLEKICLLSC-GLSAGLGAAWNVADISKGSTVVIFGLGTV 198
+S+ VV + + P + L C G++ + G + + GLG +
Sbjct: 131 GYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGL 190
Query: 199 GLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGAD 258
G + KA G + ++ ++ E G FL D+ Q +K G D
Sbjct: 191 GHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDS-----QKMKEAV-GTMD 244
Query: 259 YSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318
+ + + + L S G V LG+P+ KP + L L + + GS GG K
Sbjct: 245 FIIDTVSAEHAL-LPLFSLLKVSGKLVALGLPE-KPLDLPIFPLVLGRKMVGGSQIGGMK 302
Query: 319 PKTDL 323
++
Sbjct: 303 ETQEM 307
|
Length = 375 |
| >gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-05
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
++I G G VG S+A+ + G ++ +D +PE+ E+ + GV
Sbjct: 1 IIIIGYGRVGRSLAEELREGG-PDVVVIDKDPERVEELREEGVP 43
|
This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Length = 116 |
| >gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 52/259 (20%), Positives = 85/259 (32%), Gaps = 71/259 (27%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGP 73
L V E ++ P E+ +KV + + +D+ +P V+++G
Sbjct: 15 LKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGS 74
Query: 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY 133
GVT F G+ V L R G
Sbjct: 75 GVTGFEVGD------------------------RVAALTRVG------------------ 92
Query: 134 HYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVI 192
+EY + + V V + E +CL+ ++A A + G V+I
Sbjct: 93 ------GNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTA-YQMLHRAAKVLTGQRVLI 145
Query: 193 FGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIK 250
G G VG ++ + A GA + G T E+ A + G T + P
Sbjct: 146 HGASGGVGQALLELALLAGA-EVYG--TASERNHAALRELGATPIDYRTKDWLPA----- 197
Query: 251 RITDGGADYSFECIGDTGM 269
+T GG D F+ +G
Sbjct: 198 MLTPGGVDVVFDGVGGESY 216
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331 |
| >gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 53/270 (19%), Positives = 83/270 (30%), Gaps = 84/270 (31%)
Query: 14 KAAV--AWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQWPQ-- 63
+A +GA L + ++ V P P E+ ++V + + R+ P
Sbjct: 2 RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVP 61
Query: 64 ---CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
+VE+VG GV G+ V L
Sbjct: 62 GSDGAGVVEAVGEGVDGLKVGDRVWLT----------------------NLGWGRRQ--- 96
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180
+ +EY VV P +++ L G+S GAA
Sbjct: 97 ------------------GTAAEYVVV------------PADQLVPLPDGVSFEQGAALG 126
Query: 181 V------------ADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227
+ A G TV++ G G VG + Q A+ GA R+I ++ E E
Sbjct: 127 IPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELV 185
Query: 228 KAFGVTEFLNPNDNNEPVQQVIKRITDGGA 257
+ G N E + I T G
Sbjct: 186 RQAGADAVFNYRA--EDLADRILAATAGQG 213
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 137 AVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISK---GSTVVI 192
VS + EY + K+ S APL L G+ GL A + + DI + G TVV+
Sbjct: 99 GVSGWQEYAISDGEGLRKLDPSPAPLSAY-LGVLGMP-GLTAYFGLLDIGQPKAGETVVV 156
Query: 193 FGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVTEFLNPNDNNEPVQQVIK 250
G VG V Q AK +G R++G+ EKC+ G ++ + Q +K
Sbjct: 157 SAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKAED--FAQALK 213
Query: 251 RITDGGADYSFECIG 265
G D FE +G
Sbjct: 214 EACPKGIDVYFENVG 228
|
Length = 340 |
| >gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 80/333 (24%), Positives = 112/333 (33%), Gaps = 102/333 (30%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPE--EIRIKVVCTSL------CRSDITAWETQWP--- 62
KA V G P V E EV PQP ++ ++V + + R A P
Sbjct: 2 KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61
Query: 63 QC--CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
C +VE+VG GVT F G+ EV G
Sbjct: 62 GCDVAGVVEAVGEGVTRFRVGD------------------------EVYGCAG------- 90
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
+ G S +EY VV + A+K ++++ E L AW
Sbjct: 91 -----GLGGLQ-------GSLAEYAVVDARLLALKPANLSMREAAAL-----PLVGITAW 133
Query: 180 NV----ADISKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234
A + G TV+I G G VG Q AKA GA R+ ++ EK A++ G
Sbjct: 134 EGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADP 191
Query: 235 FLNPNDNNEPVQQVIKRITD-----------GGA--DYSFECIGDTGMITTALQSCCDGW 281
+ E V + + T GG D SFE + G + + G
Sbjct: 192 IIYY---RETVVEYVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVVS----ILGGA 244
Query: 282 GLAVTL---------GV----PKLKPEVAAHYG 301
+ GV P L E AH+G
Sbjct: 245 THDLAPLSFRNATYSGVFTLLPLLTGEGRAHHG 277
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326 |
| >gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231
+++ G G VG VA G + D + EKC +
Sbjct: 4 ILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI 45
|
Length = 389 |
| >gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 23/143 (16%)
Query: 136 CAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-------AW----NVADI 184
+ EY VV S + L+ L LSA LG A+ +
Sbjct: 91 SGFLGWQEYAVVDGA-----SGLRKLDPSLGLP--LSAYLGVLGMTGLTAYFGLTEIGKP 143
Query: 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNN 242
G TVV+ G VG V Q AK GA R++G+ + EKC G +N
Sbjct: 144 KPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT-- 200
Query: 243 EPVQQVIKRITDGGADYSFECIG 265
+ + +K G D F+ +G
Sbjct: 201 PDLAEALKEAAPDGIDVYFDNVG 223
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329 |
| >gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 58/236 (24%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCC--RI-- 67
KA V G P L + E+ + P+P + I+V L RS+I + P R+
Sbjct: 2 KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61
Query: 68 VESVG-----PGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 122
+E+VG PG F G+ V T +G +G G
Sbjct: 62 IEAVGEVEEAPG-GTFTPGQRVAT-AMGG-----------------MGRTFDG------- 95
Query: 123 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA 182
S++EYT+V + + S ++ L G+ +
Sbjct: 96 -----------------SYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSL 138
Query: 183 DISKGSTVVIFGLGT--VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
+ G T++I G GT VGL+ + AKA GA + +PE+ K G E +
Sbjct: 139 GLQPGDTLLIRG-GTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVV 192
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320 |
| >gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 63/241 (26%)
Query: 31 EVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----------QCCRIVESVGPGVTEFN 79
EV PP P E+RI+V SL D+ +P + +V +VGP VT
Sbjct: 1 EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60
Query: 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVS 139
G+ V+ GE T ++ V A
Sbjct: 61 VGDEVI-AGTGE-------------------------SMGGHATLVTVPEDQVVRKPASL 94
Query: 140 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVI-FGLGTV 198
SF E CA+ V + ++ A+ A ++KG ++I G
Sbjct: 95 SFEE------ACALPVVFLTVID---------------AFARAGLAKGEHILIQTATGGT 133
Query: 199 GLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GA 257
GL Q A+ +GA I ++ +K E K GV +N + + ++ I R+T G G
Sbjct: 134 GLMAVQLARLKGAE-IYATASSDDKLEYLKQLGVPHVINYVEED--FEEEIMRLTGGRGV 190
Query: 258 D 258
D
Sbjct: 191 D 191
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303 |
| >gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 73/330 (22%), Positives = 116/330 (35%), Gaps = 67/330 (20%)
Query: 16 AVAWGAGQP-LVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQWP---------- 62
A+A G+P + V ++ P P E+ ++ + +C +D I A E
Sbjct: 3 AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLG 62
Query: 63 -QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
+ +VE VG G + + G+ V+ C C+ + + CE + +
Sbjct: 63 HEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCE-----------TGE 110
Query: 122 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 181
T IKG + EY V VKV L + +L LS + A
Sbjct: 111 YTERGIKGLHGF-------MREYFVDDPEYLVKVP--PSLADVGVLLEPLSV-VEKAIEQ 160
Query: 182 AD-ISK------GSTVVIFGLGTVGLSVAQGAKARG-----ASRIIGVDTNPEKCEKAKA 229
A+ + K ++ G G +GL A + RG +R D K + +
Sbjct: 161 AEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR---RDPPDPKADIVEE 217
Query: 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQ--SCCDGWGLAVTL 287
G T N + PV +V G D E TG+ A + G+ +
Sbjct: 218 LGATYV---NSSKTPVAEVKL---VGEFDLIIEA---TGVPPLAFEALPALAPNGVVILF 268
Query: 288 GVPKLKPEV-----AAHYGLFLSGRTLKGS 312
GVP E + L L + L GS
Sbjct: 269 GVPGGGREFEVDGGELNRDLVLGNKALVGS 298
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355 |
| >gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 66/271 (24%), Positives = 100/271 (36%), Gaps = 74/271 (27%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWETQWPQCCRIVESV 71
KA G P V+ VEV P P+ E+ I+V + R D+ ++P
Sbjct: 2 KAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYP--------P 53
Query: 72 GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS--DQQTRFSIKG 129
PG + ++LGLE G + + + +R+ + G
Sbjct: 54 PPGAS------------------------------DILGLEVAGEVVAVGEGVSRWKV-G 82
Query: 130 KPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA--------W-N 180
V A ++EY V +G + V GLS AA W N
Sbjct: 83 DRVCALVAGGGYAEYVAVPAGQVLPVPE------------GLSLVEAAALPETFFTVWSN 130
Query: 181 VADI---SKGSTVVIFGLGTVGLSVA--QGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235
+ G TV+I G G G+ Q AKA GA R+ + EKC +A G
Sbjct: 131 LFQRGGLKAGETVLIHG-GASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIA 188
Query: 236 LNPNDNNEPVQQVIKRITDG-GADYSFECIG 265
+N + + +V+K T G G D + +G
Sbjct: 189 INYREEDFV--EVVKAETGGKGVDVILDIVG 217
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325 |
| >gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 189 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ 246
V I GLG +G S+A+ K G RIIG D + + A GV + L E
Sbjct: 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA 63
|
Length = 279 |
| >gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
G TV +FGLG GL+ A+ A GA +I D NP KA A G+T
Sbjct: 8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASRAKAAAAGIT 54
|
Length = 460 |
| >gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 65/277 (23%), Positives = 100/277 (36%), Gaps = 63/277 (22%)
Query: 16 AVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIV---ESVG 72
A+ G L VE++ P P E ++V+ +C +D+ ++ +P V E VG
Sbjct: 3 ALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYPF--PGVPGHEFVG 60
Query: 73 PGVTEFNEGEHVLTVFIGE----CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIK 128
V E E E V +GE C C C+ GL H +T I
Sbjct: 61 I-VEEGPEAELVGKRVVGEINIACGRCEYCRR---------GLYT----HCPNRTVLGIV 106
Query: 129 GKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAG-------LGAAWNV 181
+ +F+EY PLE + ++ + L AA +
Sbjct: 107 DRD-------GAFAEYLT------------LPLENLHVVPDLVPDEQAVFAEPLAAALEI 147
Query: 182 AD---ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
+ I+ G V + G G +GL +AQ G ++ V + EK A+ GV L
Sbjct: 148 LEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPD 206
Query: 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQ 275
+E GG D E G + AL+
Sbjct: 207 EAESE----------GGGFDVVVEATGSPSGLELALR 233
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225
G TV+I GLG +G +A+ AKA G R+IGV +
Sbjct: 133 AGKTVLIVGLGDIGREIARRAKAFGM-RVIGVRRSGRPAP 171
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
| >gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229
++I G G VG SVA+ G + ++ +D + E+ E+ A
Sbjct: 2 KIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEERVEEFLA 41
|
Length = 225 |
| >gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 33/199 (16%)
Query: 24 PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----------QCCRIVESVGP 73
PL E V P P E+ ++V +CR+D+ E P + V G
Sbjct: 14 PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGA 73
Query: 74 GVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPV 132
F G+ V ++ C CR C+ N C +R++
Sbjct: 74 DAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCP--------------ASRYT------ 113
Query: 133 YHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVI 192
+ ++EYT V + A ++ + ++ L C G A A + G + +
Sbjct: 114 -GWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLR-ASLPPGGRLGL 171
Query: 193 FGLGTVGLSVAQGAKARGA 211
+G G AQ A A+GA
Sbjct: 172 YGFGGSAHLTAQVALAQGA 190
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329 |
| >gnl|CDD|235824 PRK06545, PRK06545, prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 189 TVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGVTE 234
TV+I GLG +G S+A KA G IIG D + + +A FGV +
Sbjct: 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVID 48
|
Length = 359 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
G TV I GLG +G +VA+ KA G ++I D P+ +A+A G
Sbjct: 35 GKTVGIIGLGRIGRAVARRLKAFGM-KVIAYDRYPK--AEAEALGAR 78
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVT 233
+G TV + GLG VG +A+ GA ++I D N E +A FG T
Sbjct: 27 EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT 74
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 200 |
| >gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 181 VADISKGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239
+ G V+ VG + Q AK G + I V E+ E+ KA G E + +
Sbjct: 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVI--D 189
Query: 240 DNNEPVQQVIKRITDG-GADYSFECIG--DTGMITTALQ 275
+ E + Q +K T G GA + + +G + +L+
Sbjct: 190 SSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLR 228
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323 |
| >gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 30/182 (16%)
Query: 67 IVESVGPGVTEFNEGEHVL---TVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
+V VGPGVT + G+ V+ R S+ + G E T
Sbjct: 88 VVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRDGDPMLSSEQRIWGYE----------T 137
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSA-GLGAAWNV 181
F SF+E+ +V K + E C G +A WN
Sbjct: 138 NFG-------------SFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNP 184
Query: 182 ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240
A + G V+I+G G +G Q A+A G + + V ++PEK E ++ G ++ ND
Sbjct: 185 AAVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV-AVVSSPEKAEYCRSLGAEAVIDRND 243
Query: 241 NN 242
Sbjct: 244 FG 245
|
The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398 |
| >gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 190 VVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 232
+ I GLG +G S+ K +G S++ G D N +KA G+
Sbjct: 3 IGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL 46
|
Length = 275 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229
+ + GLG VGL +A G + GVD + EK +K
Sbjct: 1 MKIAVIGLGYVGLPLAALLADLGHD-VTGVDIDQEKVDKLNK 41
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 100.0 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 100.0 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 100.0 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 100.0 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 100.0 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 100.0 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 100.0 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 100.0 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 100.0 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 100.0 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 100.0 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 100.0 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 100.0 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 100.0 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 100.0 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 100.0 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 100.0 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 100.0 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 100.0 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 100.0 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 100.0 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 100.0 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 100.0 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 100.0 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 100.0 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 100.0 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 100.0 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 100.0 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 100.0 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 100.0 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 100.0 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 100.0 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 100.0 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 100.0 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 100.0 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 100.0 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 100.0 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 100.0 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 100.0 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 100.0 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 100.0 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 100.0 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 100.0 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 100.0 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 100.0 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 100.0 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 100.0 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 100.0 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 100.0 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 100.0 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 100.0 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 100.0 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 100.0 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 100.0 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 100.0 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 100.0 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 100.0 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 100.0 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 100.0 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 100.0 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 100.0 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 100.0 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 100.0 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 100.0 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 100.0 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 100.0 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 100.0 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 100.0 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 100.0 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 100.0 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 100.0 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 100.0 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 100.0 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 100.0 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 100.0 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 100.0 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 100.0 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 100.0 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 100.0 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 100.0 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 100.0 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 100.0 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08249 | 339 | enoyl_reductase_like enoyl_reductase_like. Member | 100.0 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 100.0 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 100.0 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 100.0 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 100.0 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 100.0 | |
| cd08252 | 336 | AL_MDR Arginate lyase and other MDR family members | 100.0 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 100.0 | |
| cd08272 | 326 | MDR6 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 100.0 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 100.0 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 100.0 | |
| cd08288 | 324 | MDR_yhdh Yhdh putative quinone oxidoreductases. Yh | 100.0 | |
| cd08247 | 352 | AST1_like AST1 is a cytoplasmic protein associated | 100.0 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 100.0 | |
| cd08271 | 325 | MDR5 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 100.0 | |
| cd08273 | 331 | MDR8 Medium chain dehydrogenases/reductase (MDR)/z | 99.98 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 99.97 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 99.97 | |
| cd08251 | 303 | polyketide_synthase polyketide synthase. Polyketid | 99.97 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 99.97 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 99.97 | |
| cd08275 | 337 | MDR3 Medium chain dehydrogenases/reductase (MDR)/z | 99.97 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 99.97 | |
| cd05195 | 293 | enoyl_red enoyl reductase of polyketide synthase. | 99.97 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 99.96 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 99.96 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 99.94 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 99.94 | |
| PF08240 | 109 | ADH_N: Alcohol dehydrogenase GroES-like domain; In | 99.79 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 99.72 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.47 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 99.32 | |
| PF13602 | 127 | ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ | 99.15 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.57 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.56 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.38 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.29 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.28 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.2 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.18 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.13 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.02 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.93 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.83 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.8 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 97.78 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.76 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.68 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.65 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.64 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.57 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 97.46 | |
| PF11017 | 314 | DUF2855: Protein of unknown function (DUF2855); In | 97.42 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.33 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 97.2 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.19 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.16 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.15 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.13 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.07 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.06 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.05 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 97.05 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 97.05 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.02 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 96.91 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.91 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 96.88 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 96.86 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.84 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 96.84 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 96.83 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.79 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.78 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.75 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 96.73 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.73 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 96.72 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.71 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 96.64 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.64 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.63 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.62 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 96.61 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 96.6 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 96.59 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 96.58 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 96.53 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.51 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 96.49 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.49 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.48 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.48 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 96.46 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.42 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.41 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 96.41 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 96.4 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.4 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 96.4 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.39 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 96.38 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.38 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 96.36 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.36 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 96.36 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.35 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 96.31 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 96.3 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.29 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 96.26 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 96.25 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 96.24 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.23 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 96.22 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 96.22 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 96.22 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 96.21 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 96.21 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.2 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 96.2 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.19 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 96.15 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.15 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 96.14 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.13 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.13 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 96.12 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.11 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 96.1 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.1 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 96.09 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 96.08 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 96.07 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 96.05 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 96.03 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 96.03 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.03 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 96.03 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 96.01 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 96.0 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.96 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 95.95 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 95.93 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.93 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.93 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.92 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 95.91 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.88 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 95.84 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.84 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 95.83 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 95.83 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 95.82 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 95.82 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 95.81 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 95.78 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 95.76 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 95.74 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.72 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.72 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.71 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 95.71 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.69 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.68 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.67 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 95.67 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 95.67 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.66 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 95.64 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 95.64 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 95.63 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 95.61 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 95.61 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.6 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.6 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.58 | |
| PRK05717 | 255 | oxidoreductase; Validated | 95.56 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 95.54 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 95.53 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 95.53 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 95.53 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.53 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.51 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 95.51 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 95.47 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 95.47 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.47 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 95.46 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.44 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 95.43 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 95.43 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 95.4 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 95.39 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 95.38 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 95.38 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 95.38 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 95.38 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 95.37 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 95.37 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.35 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 95.35 | |
| PLN02366 | 308 | spermidine synthase | 95.34 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.34 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 95.33 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 95.33 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.32 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.31 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.31 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 95.31 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 95.3 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 95.29 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 95.28 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.28 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 95.28 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 95.28 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 95.27 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 95.26 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.25 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 95.23 | |
| PF13823 | 23 | ADH_N_assoc: Alcohol dehydrogenase GroES-associate | 95.23 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.23 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 95.23 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 95.21 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 95.21 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 95.21 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.2 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.19 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 95.18 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 95.16 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.16 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 95.15 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 95.14 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 95.12 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 95.12 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 95.12 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.12 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.12 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.1 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 95.1 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 95.1 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.1 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 95.1 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.09 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 95.08 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.08 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 95.07 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 95.07 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 95.06 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 95.05 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.05 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.04 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 95.04 | |
| PLN02476 | 278 | O-methyltransferase | 95.02 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 95.02 | |
| PRK08643 | 256 | acetoin reductase; Validated | 95.01 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 95.01 | |
| KOG1252 | 362 | consensus Cystathionine beta-synthase and related | 94.99 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 94.99 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 94.98 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 94.98 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.98 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 94.98 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.96 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 94.96 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.94 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.9 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 94.9 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.89 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 94.87 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.86 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 94.84 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 94.84 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 94.83 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 94.83 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 94.83 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 94.82 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 94.82 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.8 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 94.78 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.77 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 94.77 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.75 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.75 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.74 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 94.73 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.72 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.7 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 94.69 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 94.69 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 94.66 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 94.64 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.64 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 94.64 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 94.63 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.63 | |
| PRK04266 | 226 | fibrillarin; Provisional | 94.62 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 94.61 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 94.6 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 94.59 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 94.59 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.57 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.55 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 94.52 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 94.5 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 94.5 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 94.49 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 94.49 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 94.48 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.48 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 94.48 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 94.47 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 94.46 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 94.43 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.43 | |
| PLN02928 | 347 | oxidoreductase family protein | 94.43 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 94.42 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 94.41 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 94.41 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 94.38 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.38 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 94.37 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.36 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 94.36 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 94.35 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 94.33 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 94.32 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 94.32 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 94.3 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 94.29 | |
| PLN02256 | 304 | arogenate dehydrogenase | 94.28 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.28 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 94.27 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 94.27 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 94.25 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 94.22 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 94.18 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 94.18 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 94.16 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.14 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 94.12 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 94.11 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 94.1 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 94.09 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 94.08 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.08 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 94.08 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 94.07 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 94.04 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.04 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 94.03 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 94.03 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.01 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.0 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 93.99 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 93.97 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 93.95 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 93.94 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 93.94 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 93.93 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 93.92 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.91 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 93.9 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 93.89 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 93.83 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 93.82 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 93.81 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 93.8 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.8 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 93.79 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.78 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 93.77 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 93.77 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 93.72 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.7 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.68 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 93.68 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 93.67 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 93.67 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 93.66 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 93.66 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 93.6 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.56 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 93.52 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 93.5 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 93.5 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 93.49 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 93.49 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.44 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.43 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 93.43 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.41 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 93.41 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.41 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 93.38 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 93.34 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 93.33 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.28 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 93.28 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 93.27 | |
| PLN03013 | 429 | cysteine synthase | 93.27 |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=427.59 Aligned_cols=355 Identities=46% Similarity=0.823 Sum_probs=336.6
Q ss_pred eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCCC
Q 017460 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 11 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~G 81 (371)
++++|++..++++||+++++.+++|++|||+||+.|+|+|++|+..++|..|. -+|+|+++|++|+++++|
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~~P~vLGHEgAGiVe~VG~gVt~vkpG 80 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEGFPAVLGHEGAGIVEAVGEGVTSVKPG 80 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCCCceecccccccEEEEecCCccccCCC
Confidence 47899999999999999999999999999999999999999999999998876 399999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
|+|+..+..+|++|.+|+++++|+|....... .|.+ .+|+.+++-+|...++++|+++|+||.++++..++|+++..+
T Consensus 81 DhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m-~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p 159 (366)
T COG1062 81 DHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAP 159 (366)
T ss_pred CEEEEcccCCCCCCchhhCCCcccccchhhhcccccc-cCCceeeecCCcceeeeeccccchhheeecccceEECCCCCC
Confidence 99999999999999999999999999655443 8888 999999999999999999999999999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
++.++++.|...|++.++.+.+++++|++|.|.|.|++|++++|-|+..|++++|+++.+++|++.+++||+++++|.+
T Consensus 160 ~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~- 238 (366)
T COG1062 160 LEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK- 238 (366)
T ss_pred ccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCc-hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCc
Q 017460 241 NNE-PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 241 ~~~-~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 319 (371)
+. +..+.++++|++|+|++|||+|....++.++++..++ |+.+.+|.......++++++.+..+.++.|+.++....
T Consensus 239 -~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~-G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p 316 (366)
T COG1062 239 -EVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRG-GTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARP 316 (366)
T ss_pred -hhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcC-CeEEEEecCCCCceeecChHHeeccceEEEEeecCCcc
Confidence 44 6999999999999999999999999999999999995 99999999887788889988888899999999998888
Q ss_pred CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 320 KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
+.+++.++++..+|++++.+++++.++|+|+++||+.|.+++.+|-||.+
T Consensus 317 ~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~ 366 (366)
T COG1062 317 RSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF 366 (366)
T ss_pred ccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence 89999999999999999999999999999999999999999999887764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-62 Score=434.73 Aligned_cols=326 Identities=31% Similarity=0.483 Sum_probs=293.7
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~ 79 (371)
+++|||++++++++|+++.+++.|+|+++||+|+|+|||+|++|+++++|.++. ++|+|+++|++|++|+
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k 80 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK 80 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence 478999999999999999999999999999999999999999999999999875 6999999999999999
Q ss_pred CCCEEEe-eecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 80 EGEHVLT-VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 80 ~Gd~V~~-~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
+||||.+ +++.+|++|.||++|++++|.+... .|++ .+ |+||||+++++.+++++|++
T Consensus 81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~--~gy~-~~------------------GGyaeyv~v~~~~~~~iP~~ 139 (339)
T COG1064 81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI--TGYT-TD------------------GGYAEYVVVPARYVVKIPEG 139 (339)
T ss_pred CCCEEEecCccCCCCCCccccCcccccCCCccc--ccee-ec------------------CcceeEEEEchHHeEECCCC
Confidence 9999999 8899999999999999999999666 4444 44 48999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+++++||.+.|+..|.|++| +..++++|++|+|.|+|++|.+|+|+|+++|+ +|++++++++|++.+++||++++++.
T Consensus 140 ~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 140 LDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINS 217 (339)
T ss_pred CChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEc
Confidence 99999999999999999998 66999999999999999999999999999998 99999999999999999999999988
Q ss_pred CCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh-eeeeccEEEecccCCC
Q 017460 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG-LFLSGRTLKGSLFGGW 317 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~ 317 (371)
+ +++..+.+++. +|++||+++ +..++.+++.|+++ |+++.+|.........++.+ .+++++++.|+..++
T Consensus 218 ~--~~~~~~~~~~~----~d~ii~tv~-~~~~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~- 288 (339)
T COG1064 218 S--DSDALEAVKEI----ADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT- 288 (339)
T ss_pred C--CchhhHHhHhh----CcEEEECCC-hhhHHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC-
Confidence 6 56677776653 999999999 78999999999998 99999998852222334443 346799999998887
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
+.++++++++..++++++. +.+.++++++++||++|++++.. |+||++.+
T Consensus 289 --~~d~~e~l~f~~~g~Ikp~--i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~~ 339 (339)
T COG1064 289 --RADLEEALDFAAEGKIKPE--ILETIPLDEINEAYERMEKGKVRGRAVIDMSS 339 (339)
T ss_pred --HHHHHHHHHHHHhCCceee--EEeeECHHHHHHHHHHHHcCCeeeEEEecCCC
Confidence 5689999999999997765 43699999999999999999988 99998763
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=410.87 Aligned_cols=362 Identities=54% Similarity=0.974 Sum_probs=342.5
Q ss_pred CccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCC
Q 017460 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVT 76 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~ 76 (371)
+.++.+|||++.+++++||.++|+..++|+.+||+||++++++|++|+..++|..+. .+|+|+.+|.+|+
T Consensus 2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~ 81 (375)
T KOG0022|consen 2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT 81 (375)
T ss_pred CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence 456899999999999999999999999999999999999999999999999998543 4999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccc--cccccCCCccceeccCcccccccCccceeeEEEeeCCceEE
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER--RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK 154 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~--~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~ 154 (371)
.+++||+|+..+...|++|.+|++++.|+|....... .++. .+|.+||..+|+..+|.++.++|+||.+++...+.+
T Consensus 82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~-~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~k 160 (375)
T KOG0022|consen 82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMP-YDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAK 160 (375)
T ss_pred ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccc-cCCceeeeeCCCceEEecccccceeEEEeecceeEe
Confidence 9999999999999999999999999999999887766 4444 699999999999999999999999999999999999
Q ss_pred CCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 155 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 155 ~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
+++..+++.++++.|...|+|.|.++.+++++|+++.|+|-|++|+++++-|++.|++++|.++.+++|.+.+++||+.+
T Consensus 161 Id~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 161 IDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred cCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEeccc
Q 017460 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLF 314 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~ 314 (371)
.+|+.+......+-+++.|++|+|+-|||+|..+.+++++.+.+.+||+-+.+|.....+.+++.++.++.++++.|+.+
T Consensus 241 ~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~F 320 (375)
T KOG0022|consen 241 FINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAF 320 (375)
T ss_pred ecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEec
Confidence 99987544568899999999999999999999999999999999999999999998888889999999899999999999
Q ss_pred CCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 315 GGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
++++.+.+++.+++...++++++.++|+|++||+++++||+.|.+++.+|-|+.+
T Consensus 321 GG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~GksiR~vl~~ 375 (375)
T KOG0022|consen 321 GGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSIRCVLWM 375 (375)
T ss_pred ccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999888754
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-57 Score=390.56 Aligned_cols=333 Identities=25% Similarity=0.403 Sum_probs=291.2
Q ss_pred eeeeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcCCCCC-------------eEEEEEeeCCCCC
Q 017460 11 ITCKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQWPQ-------------CCRIVESVGPGVT 76 (371)
Q Consensus 11 ~~~~a~~~~~~~~~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~~~~-------------~~G~V~~~G~~v~ 76 (371)
.+|+|+++.+++. ++++++|.|++ .|+||+|++.++|||++|+|.++..... .+|+|+++|++|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 5689999999998 99999999998 9999999999999999999999854432 4999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
++++||||+..|..+|+.|+.|++|++|+|.+..+.+.+.. + |++++|++.++++++|+|
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~--~------------------G~la~y~~~~~dfc~KLP 141 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPV--D------------------GTLAEYYVHPADFCYKLP 141 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCccccccCCCc--C------------------CceEEEEEechHheeeCC
Confidence 99999999999999999999999999999999998655432 2 489999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
+++|++++|++. +++++++|. ++++++.|.+|||+|||++|+++...||++|+++|+.++..++|++.+++||++.+.
T Consensus 142 d~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~ 219 (354)
T KOG0024|consen 142 DNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTD 219 (354)
T ss_pred CCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEe
Confidence 999999999998 899999997 889999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCC--chHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecc
Q 017460 237 NPNDNN--EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSL 313 (371)
Q Consensus 237 ~~~~~~--~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~ 313 (371)
+..... +.+.+.++...+. .+|+.|||+|....++.++.+++.+ |++++.|......++++.... ++++++.|++
T Consensus 220 ~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~g~~~~~fpi~~v~-~kE~~~~g~f 297 (354)
T KOG0024|consen 220 PSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGMGAEEIQFPIIDVA-LKEVDLRGSF 297 (354)
T ss_pred eccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEeccCCCccccChhhhh-hheeeeeeee
Confidence 665322 3344555555554 6999999999988899999999997 998888876554444443333 6799999987
Q ss_pred cCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCC--eeeEEEeCCC
Q 017460 314 FGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK--CLRSVIHMPK 371 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~--~~kvvi~~~~ 371 (371)
-+. ..++..+++++.+|+++++++|++.|+++++.+||+.+..+. ..|++|..++
T Consensus 298 ry~---~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~ 354 (354)
T KOG0024|consen 298 RYC---NGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE 354 (354)
T ss_pred eec---cccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence 432 358999999999999999999999999999999999988777 3499998763
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-54 Score=370.60 Aligned_cols=336 Identities=25% Similarity=0.390 Sum_probs=293.6
Q ss_pred CccceeeeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCC
Q 017460 7 QPQVITCKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPG 74 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~ 74 (371)
+.-+.+++++++++++. ++++..++.|+++++||+|+++|||||++|++.++|.++. ++|+|+++|++
T Consensus 4 ~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~ 83 (360)
T KOG0023|consen 4 MSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSN 83 (360)
T ss_pred ccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCC
Confidence 34578889999999888 5777999999999999999999999999999999999875 69999999999
Q ss_pred CCCCCCCCEEEe-eecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceE
Q 017460 75 VTEFNEGEHVLT-VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV 153 (371)
Q Consensus 75 v~~~~~Gd~V~~-~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~ 153 (371)
|+.|++||||-+ +...+|.+|++|..+++++|....+...|+. .+|+ ..+|+|++|+++++.+++
T Consensus 84 V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~-~DGt-------------~~~ggf~~~~~v~~~~a~ 149 (360)
T KOG0023|consen 84 VTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVY-HDGT-------------ITQGGFQEYAVVDEVFAI 149 (360)
T ss_pred cccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccc-cCCC-------------CccCccceeEEEeeeeEE
Confidence 999999999955 5578899999999999999997666556665 5552 346799999999999999
Q ss_pred ECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh-hhHHHHHHcCC
Q 017460 154 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP-EKCEKAKAFGV 232 (371)
Q Consensus 154 ~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~-~~~~~~~~lg~ 232 (371)
++|++++.+.||.+.|+..|+|.+| ...++.+|++|.|.|+|++|.+++|+|+++|. +|+++++++ .|++.++.||+
T Consensus 150 kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGA 227 (360)
T KOG0023|consen 150 KIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGA 227 (360)
T ss_pred ECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCc
Confidence 9999999999999999999999998 67889999999999997799999999999999 999999988 56666788999
Q ss_pred ceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEe
Q 017460 233 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKG 311 (371)
Q Consensus 233 ~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g 311 (371)
+..++..+ ++++.+++...+++++|-|.+. ....++.+++.++.+ |++|++|.+.. ++.++.+++ +..++|.|
T Consensus 228 d~fv~~~~-d~d~~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~~--~~~~~~~~lil~~~~I~G 301 (360)
T KOG0023|consen 228 DVFVDSTE-DPDIMKAIMKTTDGGIDTVSNL--AEHALEPLLGLLKVN-GTLVLVGLPEK--PLKLDTFPLILGRKSIKG 301 (360)
T ss_pred ceeEEecC-CHHHHHHHHHhhcCcceeeeec--cccchHHHHHHhhcC-CEEEEEeCcCC--cccccchhhhcccEEEEe
Confidence 98887764 6788999999988888888776 345789999999998 99999999876 344444433 56889999
Q ss_pred cccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 312 SLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
+.+++ +.+.++++++..++.+++. | +..+++++++||++|.+++.. |.||++.
T Consensus 302 S~vG~---~ket~E~Ldf~a~~~ik~~--I-E~v~~~~v~~a~erm~kgdV~yRfVvD~s 355 (360)
T KOG0023|consen 302 SIVGS---RKETQEALDFVARGLIKSP--I-ELVKLSEVNEAYERMEKGDVRYRFVVDVS 355 (360)
T ss_pred ecccc---HHHHHHHHHHHHcCCCcCc--e-EEEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence 99988 5689999999999997765 4 788999999999999999988 9999875
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-53 Score=397.32 Aligned_cols=370 Identities=80% Similarity=1.337 Sum_probs=301.3
Q ss_pred CcCCCCccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC--CC-----eEEEEEeeCCC
Q 017460 2 STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW--PQ-----CCRIVESVGPG 74 (371)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~--~~-----~~G~V~~~G~~ 74 (371)
|.++++++...|||+++.++++.+++.++|.|+++++||+|||.+++||++|++.+.|.. +. ++|+|+++|++
T Consensus 2 ~~~~~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~~~p~i~GhE~~G~V~~vG~~ 81 (378)
T PLN02827 2 SSSISQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQALFPRIFGHEASGIVESIGEG 81 (378)
T ss_pred CccccCcccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCCCCCeeecccceEEEEEcCCC
Confidence 456778888999999999888779999999999999999999999999999999987742 21 69999999999
Q ss_pred CCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEE
Q 017460 75 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK 154 (371)
Q Consensus 75 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~ 154 (371)
++.|++||+|++.+..+|+.|.+|+++++++|.+......|....++...+...|.-.+++...|+|+||+.++++.+++
T Consensus 82 v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~ 161 (378)
T PLN02827 82 VTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK 161 (378)
T ss_pred CcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEE
Confidence 99999999999999899999999999999999875433222210000000000000000011236899999999999999
Q ss_pred CCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 155 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 155 ~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
+|+++++++++.+++++.++++++++.+++++|++|||+|+|++|++++|+|+++|+..|++++++++|++.++++|+++
T Consensus 162 iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~ 241 (378)
T PLN02827 162 VDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTD 241 (378)
T ss_pred CCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence 99999999999998899999998877788999999999999999999999999999966888888999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEeccc
Q 017460 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLF 314 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~ 314 (371)
++++++.+.++.+.+++++++++|+|||++|....+..+++.+++++|+++.+|.......+......+++++++.|+..
T Consensus 242 ~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~ 321 (378)
T PLN02827 242 FINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLF 321 (378)
T ss_pred EEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeec
Confidence 99886322467788888877699999999998767899999999933999999976442222222223457899999877
Q ss_pred CCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeCCC
Q 017460 315 GGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMPK 371 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~~~ 371 (371)
+.+....++.++++++.++++++.++++++|+|+++.+||+.+.+++..|+||++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~~~ 378 (378)
T PLN02827 322 GGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHMPK 378 (378)
T ss_pred CCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEecC
Confidence 655444578899999999999887789999999999999999998887899998864
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=394.89 Aligned_cols=364 Identities=51% Similarity=0.951 Sum_probs=297.8
Q ss_pred CCccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCC
Q 017460 6 KQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPG 74 (371)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~ 74 (371)
++.++++|||+++.++++++++.++|.|+++++||+|||.++|||++|++.+.|.++ + ++|+|+++|++
T Consensus 4 ~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~ 83 (381)
T PLN02740 4 TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEG 83 (381)
T ss_pred ccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCC
Confidence 456788999999999987799999999999999999999999999999999988642 1 69999999999
Q ss_pred CCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccc-cCCCccceecc--CcccccccCccceeeEEEeeCCc
Q 017460 75 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM-HSDQQTRFSIK--GKPVYHYCAVSSFSEYTVVHSGC 151 (371)
Q Consensus 75 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~-~~~g~~~~~~~--~~~~~~~~~~g~~a~~~~~~~~~ 151 (371)
++.|++||||++.+..+|+.|.+|++++++.|.+......+.. ...|...+... +...++....|+|+||++++++.
T Consensus 84 v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~ 163 (381)
T PLN02740 84 VEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSAC 163 (381)
T ss_pred CCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHH
Confidence 9999999999999999999999999999999988643111000 00000000000 00001111236899999999999
Q ss_pred eEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC
Q 017460 152 AVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231 (371)
Q Consensus 152 ~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg 231 (371)
++++|++++.++++.+++++.|||+++++.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|
T Consensus 164 ~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~G 243 (381)
T PLN02740 164 VVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMG 243 (381)
T ss_pred eEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcC
Confidence 99999999999999999999999998878889999999999999999999999999999866999999999999999999
Q ss_pred CceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEe
Q 017460 232 VTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKG 311 (371)
Q Consensus 232 ~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g 311 (371)
++.++++++.+.++.+.+++++++++|+|||++|+...+..++.++++++|+++.+|.......+++....+.+++++.|
T Consensus 244 a~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g 323 (381)
T PLN02740 244 ITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGRSITG 323 (381)
T ss_pred CcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHhcCCeEEE
Confidence 99999876322357788888876689999999998778999999998833999999976543334444443346889998
Q ss_pred cccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 312 SLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
+..+.+....++.++++++.++++++.++++++|+|+|+++||+.+.+++..|++|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~ 381 (381)
T PLN02740 324 SVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL 381 (381)
T ss_pred EecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence 8776654445688999999999998888899999999999999999888777999864
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=386.70 Aligned_cols=356 Identities=47% Similarity=0.871 Sum_probs=289.1
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++...+++++++++|.|+++++||+|||.+++||++|++.+.|.++. ++|+|+++|++++.|++||
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd 81 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence 899999888888999999999999999999999999999999999886531 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCccccccc-ccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
||++.+..+|+.|.+|+.+++++|.+.... ..|+. .+|..++...|...++..+.|+|+||++++++.++++|+++++
T Consensus 82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~ 160 (368)
T TIGR02818 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL 160 (368)
T ss_pred EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence 999998999999999999999999874321 01221 1111111111111111112468999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
++++++++++.+||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|++.++++++.
T Consensus 161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~ 240 (368)
T TIGR02818 161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDY 240 (368)
T ss_pred HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEccccc
Confidence 99999999999999998778899999999999999999999999999998779999999999999999999999987632
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 321 (371)
+.++.+.+++++++++|++||++|+...+..+++++++++|+++.+|.......+.+....+..+..+.++..+....+.
T Consensus 241 ~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 320 (368)
T TIGR02818 241 DKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVTGRVWRGSAFGGVKGRT 320 (368)
T ss_pred chhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhccceEEEeeccCCCcHH
Confidence 34567778888877999999999987788999999987339999999754322333333333344556676554333345
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
++.++++++.++++++.++++++|+|+|+.+||+.+.+++..|++|.+
T Consensus 321 ~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~ 368 (368)
T TIGR02818 321 ELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY 368 (368)
T ss_pred HHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence 788999999999998888899999999999999999887767999874
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=388.50 Aligned_cols=351 Identities=35% Similarity=0.643 Sum_probs=291.1
Q ss_pred eeEEEEecCC--------CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCC
Q 017460 13 CKAAVAWGAG--------QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGV 75 (371)
Q Consensus 13 ~~a~~~~~~~--------~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v 75 (371)
|||+++.++| +.++++++|.|+++++||+|||.+++||++|++++.|.++. ++|+|+++|+++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~~~p~i~GhE~~G~V~~vG~~v 80 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPLPMALGHEAAGVVVEVGEGV 80 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCCCCCccCCccceeEEEEeCCCC
Confidence 8999999876 34899999999999999999999999999999999885431 699999999999
Q ss_pred CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEE
Q 017460 76 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK 154 (371)
Q Consensus 76 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~ 154 (371)
+.+++||||++.+...|+.|.+|+.++++.|.+..... .|.. .+|...+...+..+.+..+.|+|+||+.++++.+++
T Consensus 81 ~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~ 159 (371)
T cd08281 81 TDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVK 159 (371)
T ss_pred CcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceEE
Confidence 99999999999888899999999999999998754311 1111 111111111111112222346899999999999999
Q ss_pred CCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 155 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 155 ~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
+|+++++++|+++++++.+|++++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|+++
T Consensus 160 lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~ 239 (371)
T cd08281 160 IDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA 239 (371)
T ss_pred CCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce
Confidence 99999999999999999999999877888999999999999999999999999999967999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecc
Q 017460 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSL 313 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~ 313 (371)
++++. +.++.+.+++++++++|+|||++|....+..++++++++ |+++.+|.......+.++... +.+++++.+++
T Consensus 240 ~i~~~--~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~ 316 (371)
T cd08281 240 TVNAG--DPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSLVAEERTLKGSY 316 (371)
T ss_pred EeCCC--chhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCceeeecHHHHhhcCCEEEEEe
Confidence 99886 567888888887778999999999877899999999997 999999976432233444333 34689999987
Q ss_pred cCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEE
Q 017460 314 FGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 367 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi 367 (371)
.+.+....++.++++++.++++++.++++++|+|+++++||+.+.+++..|.||
T Consensus 317 ~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi 370 (371)
T cd08281 317 MGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI 370 (371)
T ss_pred cCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence 765444467889999999999998888899999999999999999998884443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=383.61 Aligned_cols=357 Identities=50% Similarity=0.933 Sum_probs=291.4
Q ss_pred eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCC
Q 017460 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 11 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~ 80 (371)
.+|||+++.+.+++++++++|.|+++++||+|||.+++||++|++.+.|.++. ++|+|+++|+++++|++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v 80 (368)
T cd08300 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP 80 (368)
T ss_pred CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCC
Confidence 37899999888888999999999999999999999999999999998875431 69999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCccccccc-ccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
||+|++.+..+|+.|.+|++++++.|.+.... ..|.. .+|..++-.+|...++..+.|+|+||+.++++.++++|+++
T Consensus 81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l 159 (368)
T cd08300 81 GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA 159 (368)
T ss_pred CCEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence 99999999999999999999999999864311 11221 22211111111112222234689999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++++++++++.+||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|++++++++
T Consensus 160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~ 239 (368)
T cd08300 160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPK 239 (368)
T ss_pred ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEccc
Confidence 99999999999999999987778899999999999999999999999999996799999999999999999999999886
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCc
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 319 (371)
+.++++.+.+++++++++|+|||++|+...+..+++++++++|+++.+|.......+......+..+.++.++..+.+..
T Consensus 240 ~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 319 (368)
T cd08300 240 DHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTGRVWKGTAFGGWKS 319 (368)
T ss_pred ccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHhhcCeEEEEEecccCc
Confidence 32235788888888779999999999866889999999874499999997643223333333333455666766655544
Q ss_pred CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEe
Q 017460 320 KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIH 368 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~ 368 (371)
+.++.++++++.++++++.++++++|+|+++++||+.+.+++..|++|+
T Consensus 320 ~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~ 368 (368)
T cd08300 320 RSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK 368 (368)
T ss_pred HHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence 5678899999999999988888999999999999999988877798874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=382.40 Aligned_cols=358 Identities=60% Similarity=1.097 Sum_probs=294.2
Q ss_pred eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCCCCC
Q 017460 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 11 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~~~~ 80 (371)
++|||+++.+++++++++++|.|+++++||+|||.+++||++|++.++|..+ + ++|+|+++|+++++|++
T Consensus 1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (369)
T cd08301 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP 80 (369)
T ss_pred CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence 4899999999888899999999999999999999999999999999888643 1 59999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
||||++.+..+|++|.+|+++++++|.+..... .|....++...+...|...++..+.|+|+||+++++..++++|+++
T Consensus 81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~ 160 (369)
T cd08301 81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA 160 (369)
T ss_pred CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence 999999999999999999999999998754210 1111000000000011111111123689999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++++++++.+.++|+++++..++++|++|||+|+|++|++++|+|+++|+.+|+++++++++++.++++|++.++++.
T Consensus 161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~ 240 (369)
T cd08301 161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK 240 (369)
T ss_pred CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEccc
Confidence 99999999989999999887888999999999999999999999999999986799999999999999999999899875
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCc
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 319 (371)
+.+..+.+.+++++++++|++||++|....+..++.++++++|+++.+|.......+++....+++++++.|+..+.+..
T Consensus 241 ~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 320 (369)
T cd08301 241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLLNGRTLKGTLFGGYKP 320 (369)
T ss_pred ccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHhcCCeEEEEecCCCCh
Confidence 32245777788887769999999999877789999999992289999998654334444444345689999987766654
Q ss_pred CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEe
Q 017460 320 KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIH 368 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~ 368 (371)
+.++.++++++.++++++.++++++|+|+|+++||+.+.+++..|++|+
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~ 369 (369)
T cd08301 321 KTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCILH 369 (369)
T ss_pred HHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEeC
Confidence 5578899999999999888888999999999999999999888898874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=381.00 Aligned_cols=347 Identities=31% Similarity=0.531 Sum_probs=290.3
Q ss_pred eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC---C------eEEEEEeeCCCCCCCCCCC
Q 017460 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP---Q------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 12 ~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~---~------~~G~V~~~G~~v~~~~~Gd 82 (371)
||||+++++++++++++++|.|+++++||+|||.++++|++|++.+.|..+ + ++|+|+++|++++.|++||
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 80 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDEFPFLLGHEAAGVVEAVGEGVTDVAPGD 80 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccccCCcccccceEEEEEEeCCCCcccCCCC
Confidence 699999999998899999999999999999999999999999999988532 1 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
+|++.+...|+.|.+|+++++++|........++. . .+|.......+.|+|+||+.++++.++++|++++++
T Consensus 81 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~-~-------~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~ 152 (358)
T TIGR03451 81 YVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMT-L-------TDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPA 152 (358)
T ss_pred EEEEccCCCCCCChHHhCcCcccCcCccccccccc-c-------ccCcccccccccccccceEEEehhheEECCCCCChh
Confidence 99999999999999999999999985432110000 0 000000000113689999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
+++++++.+.++|+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|++.+++++ +
T Consensus 153 ~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~--~ 230 (358)
T TIGR03451 153 AAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS--G 230 (358)
T ss_pred HhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCC--C
Confidence 99999999999998877778899999999999999999999999999996699999999999999999999999886 5
Q ss_pred chHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-heeeeccEEEecccCCCCcC
Q 017460 243 EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-GLFLSGRTLKGSLFGGWKPK 320 (371)
Q Consensus 243 ~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~ 320 (371)
.++.+.+++++++ ++|+|||++|+...+..++++++++ |+++.+|........+++. ..+.++.++.+++.+.....
T Consensus 231 ~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 309 (358)
T TIGR03451 231 TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPE 309 (358)
T ss_pred cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcH
Confidence 6788889988887 8999999999877889999999997 9999999764422334443 22345888888765433234
Q ss_pred CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 321 TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
.++.++++++.++++++.++++++|+++|+.+||+.+++++..|++|..
T Consensus 310 ~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~~ 358 (358)
T TIGR03451 310 RDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVEL 358 (358)
T ss_pred HHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEeC
Confidence 5788899999999999888889999999999999999888877888763
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=379.45 Aligned_cols=356 Identities=52% Similarity=0.954 Sum_probs=295.7
Q ss_pred eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCCC
Q 017460 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 11 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~G 81 (371)
+.|||+++.+.+++++++++|.|.++++||+|||.++++|++|++.+.|..+. ++|+|+++|++++.+++|
T Consensus 1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 80 (365)
T cd08277 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKATLFPVILGHEGAGIVESVGEGVTNLKPG 80 (365)
T ss_pred CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCCCCCCeecccceeEEEEeeCCCCccCCCC
Confidence 46899999988877999999999999999999999999999999999886431 699999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
|+|++.+..+|+.|.+|+++++++|.+......|.. .++...+...|+..++..+.|+|+||++++++.++++|+++++
T Consensus 81 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~~ 159 (365)
T cd08277 81 DKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPL 159 (365)
T ss_pred CEEEECCCCCCCCCchhcCcCcccCcCccccccccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCCCH
Confidence 999999889999999999999999998654433433 3222222222222222223468999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
++++++++++.+||+++.+.+++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++.++++|+++++++.+.
T Consensus 160 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~ 239 (365)
T cd08277 160 EHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDS 239 (365)
T ss_pred HHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccc
Confidence 99999999999999988778889999999999999999999999999998679999999999999999999999987632
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 321 (371)
+.++.+.+++++++++|+|||++|+...+..+++++++++|+++.+|.... ...++....+..++++.+++.+.+..+.
T Consensus 240 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 318 (365)
T cd08277 240 DKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPG-AELSIRPFQLILGRTWKGSFFGGFKSRS 318 (365)
T ss_pred cchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCc-cccccCHhHHhhCCEEEeeecCCCChHH
Confidence 234677788877778999999999777789999999873499999997643 2233333333348889888877665455
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEe
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIH 368 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~ 368 (371)
++.++++++.++.+++.++++++|+++|+++||+.+.+++..|++|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~ 365 (365)
T cd08277 319 DVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT 365 (365)
T ss_pred HHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence 78899999999999888889999999999999999988876688873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=371.13 Aligned_cols=327 Identities=28% Similarity=0.446 Sum_probs=281.5
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~~G 81 (371)
|||+++++++. ++++++|.|+++++||+||+.++++|++|++.+.+.+. + ++|+|+++|++|+.+++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 79999988765 99999999999999999999999999999998866421 1 699999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
|+|++.+...|+.|++|+.++++.|.+... ..|.. .+ |+|+||+.++++.++++|+++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~-~~g~~-~~------------------G~~ae~~~v~~~~~~~~P~~~~~ 139 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA-AYGWN-RD------------------GGHAEYMLVPEKTLIPLPDDLSF 139 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc-ccccC-CC------------------CcceeEEEechHHeEECCCCCCH
Confidence 999999999999999999999999987543 12322 22 48999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
++|+++++++.|||+++ +..++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|++.+++++
T Consensus 140 ~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~-- 216 (339)
T cd08239 140 ADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSG-- 216 (339)
T ss_pred HHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCC--
Confidence 99999999999999998 667889999999999999999999999999994499999999999999999999999886
Q ss_pred CchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcC
Q 017460 242 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPK 320 (371)
Q Consensus 242 ~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~ 320 (371)
+.+ .+.+.+++++ ++|+|||++|+...+..++++++++ |+++.+|.... ..+......+.+++++.+++... .
T Consensus 217 ~~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~---~ 290 (339)
T cd08239 217 QDD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGGE-LTIEVSNDLIRKQRTLIGSWYFS---V 290 (339)
T ss_pred cch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCCC-cccCcHHHHHhCCCEEEEEecCC---H
Confidence 444 6777888877 9999999999876778899999997 99999997543 23332223335688999886543 3
Q ss_pred CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 321 TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
+++.++++++.++++++.++++++|+++++++||+.+.++...|+||++
T Consensus 291 ~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~ 339 (339)
T cd08239 291 PDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF 339 (339)
T ss_pred HHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence 5789999999999998888899999999999999999887645999864
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=360.43 Aligned_cols=328 Identities=20% Similarity=0.318 Sum_probs=268.3
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhc-CCC---C---C------eEEEEEeeCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQW---P---Q------CCRIVESVGPGVT 76 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~-g~~---~---~------~~G~V~~~G~~v~ 76 (371)
...|+|++++++++ ++++++|.| ++++||+|||.++|||++|+++++ |.+ + + ++|+|+++ +++
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~ 77 (343)
T PRK09880 2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS 77 (343)
T ss_pred cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence 35689999998887 999999987 589999999999999999998875 321 1 1 69999999 788
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+|++||||+..+..+|+.|++|+++++++|.+.... |.. ... ....|+|+||++++++.++++|
T Consensus 78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~--g~~-~~~-------------~~~~G~~aey~~v~~~~~~~~P 141 (343)
T PRK09880 78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFF--GSA-MYF-------------PHVDGGFTRYKVVDTAQCIPYP 141 (343)
T ss_pred cCCCCCEEEECCCCCCcCChhhcCCChhhCCCccee--ecc-ccc-------------CCCCCceeeeEEechHHeEECC
Confidence 999999999999999999999999999999875432 210 000 0012589999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
+++++++++.. .++++||+++ ......+|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|+++++
T Consensus 142 ~~l~~~~aa~~-~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 142 EKADEKVMAFA-EPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCHHHHHhh-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEe
Confidence 99999877655 4788999997 555667899999999999999999999999997799999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCC
Q 017460 237 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGG 316 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 316 (371)
+++ ++++.+ +.+. .+++|+|||++|+...+..++++++++ |+++.+|.......+++. ..+.+++++.++...
T Consensus 220 ~~~--~~~~~~-~~~~-~g~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~-~~~~k~~~i~g~~~~- 292 (343)
T PRK09880 220 NPQ--NDDLDH-YKAE-KGYFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGGAPPEFPMM-TLIVKEISLKGSFRF- 292 (343)
T ss_pred cCC--cccHHH-Hhcc-CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCCccCHH-HHHhCCcEEEEEeec-
Confidence 886 334433 2221 236999999999877789999999997 999999975432333322 223568888887642
Q ss_pred CCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 317 WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
..++.++++++.++++++.++++++|+++++++||+.+.+++.. |++|.+
T Consensus 293 ---~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 293 ---TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred ---cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 35799999999999998888889999999999999999888766 999864
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=360.10 Aligned_cols=336 Identities=22% Similarity=0.322 Sum_probs=265.2
Q ss_pred eeeEEEEecCCCCeEEEEeecCCCC-------CCcEEEEEeeecCCcchhhhhcCCCC---C------eEEEEEeeCCCC
Q 017460 12 TCKAAVAWGAGQPLVVEEVEVNPPQ-------PEEIRIKVVCTSLCRSDITAWETQWP---Q------CCRIVESVGPGV 75 (371)
Q Consensus 12 ~~~a~~~~~~~~~l~~~~~~~p~~~-------~~evlV~v~~~~i~~~D~~~~~g~~~---~------~~G~V~~~G~~v 75 (371)
.|||++++++++ ++++++|.|+|+ +|||+|||.++|||++|+++++|..+ + ++|+|+++|++|
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~~~p~i~GhE~~G~V~~vG~~V 80 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTAPTGLVLGHEITGEVIEKGRDV 80 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCCCCCccccceeEEEEEEEcCcc
Confidence 489999998886 999999999874 68999999999999999999988642 1 699999999999
Q ss_pred CCCCCCCEEEeeecCCCCCCccccCCCCCCccccccc----ccccccCCCccceeccCcccccccCccceeeEEEeeCC-
Q 017460 76 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE----RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG- 150 (371)
Q Consensus 76 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~----~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~- 150 (371)
++|++||||++.+..+|+.|++|+++++++|.+.... ..|+. ..| .-.|+|+||+++++.
T Consensus 81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~-~~~--------------~~~G~~aey~~v~~~~ 145 (393)
T TIGR02819 81 EFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYV-DMG--------------GWVGGQSEYVMVPYAD 145 (393)
T ss_pred ccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccc-ccC--------------CCCCceEEEEEechhh
Confidence 9999999999999999999999999999999974321 01211 000 002589999999964
Q ss_pred -ceEECCCCCCh----hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHH
Q 017460 151 -CAVKVSSIAPL----EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225 (371)
Q Consensus 151 -~~~~~P~~~~~----~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~ 225 (371)
.++++|++++. .+++.+.+++.++|+++ +..++++|++|||.|+|++|++++|+|+++|++.+++++++++|++
T Consensus 146 ~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~ 224 (393)
T TIGR02819 146 FNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLA 224 (393)
T ss_pred CceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence 79999998753 34667777899999987 5678999999999999999999999999999955666778889999
Q ss_pred HHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCCh--------------HHHHHHHHHhccCCceEEEecCC
Q 017460 226 KAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDT--------------GMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 226 ~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~--------------~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+++++|++. ++..+ ..++.+.+.+++++ ++|++||++|.. ..++.++++++++ |+++.+|..
T Consensus 225 ~a~~~Ga~~-v~~~~-~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~~~G~~ 301 (393)
T TIGR02819 225 QARSFGCET-VDLSK-DATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVG-GAIGIPGLY 301 (393)
T ss_pred HHHHcCCeE-EecCC-cccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCC-CEEEEeeec
Confidence 999999974 44431 34677788888887 999999999975 3799999999998 999999986
Q ss_pred CCCCeee-----------cchhe-eeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCccee-eeecchhHHHHHHHH
Q 017460 291 KLKPEVA-----------AHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFIT-HNLLFEDINQAFNLM 357 (371)
Q Consensus 291 ~~~~~~~-----------~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~a~~~~ 357 (371)
....... +.... +.++.++.+.. ......+.++++++.++++++.++++ ++|+|+++++||+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~---~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~ 378 (393)
T TIGR02819 302 VTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEF 378 (393)
T ss_pred CCcccccccccccccccccchHHhhccCceEEecc---CChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHH
Confidence 3211111 11111 12345555421 11112346799999999999887776 789999999999999
Q ss_pred HcCCeeeEEEeCC
Q 017460 358 KEGKCLRSVIHMP 370 (371)
Q Consensus 358 ~~~~~~kvvi~~~ 370 (371)
.++...|++|.+.
T Consensus 379 ~~~~~~Kvvi~~~ 391 (393)
T TIGR02819 379 DAGAAKKFVIDPH 391 (393)
T ss_pred hhCCceEEEEeCC
Confidence 8887679999874
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=353.42 Aligned_cols=333 Identities=28% Similarity=0.377 Sum_probs=269.1
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~~G 81 (371)
|+++++..++...++++.+.|.+.+++|+|||.++|||+||++.++|..+. ++|+|+++| .++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G 79 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence 677777777654557777777789999999999999999999999985432 699999999 77889999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEE-CCCCCC
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK-VSSIAP 160 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-~P~~~~ 160 (371)
|||++.+..+|++|++|+.+.+++|.+.++.+....+.+ -.|+|+||+++|.+.+++ +|++++
T Consensus 80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~----------------~~G~~aEyv~vp~~~~~~~~pd~~~ 143 (350)
T COG1063 80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGG----------------IDGGFAEYVRVPADFNLAKLPDGID 143 (350)
T ss_pred CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCC----------------CCCceEEEEEeccccCeecCCCCCC
Confidence 999999999999999999999999996553221111010 025899999999755555 588885
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEeCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPN 239 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi~~~ 239 (371)
.+.+++. .++++++++.......+++++|+|+|+|++|++++++++.+|+++|++++.+++|++++++ +|++.+++..
T Consensus 144 ~~~aal~-epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 144 EEAAALT-EPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred hhhhhhc-ChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCc
Confidence 5555555 4999997774455556666699999999999999999999999999999999999999998 6777677664
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecc-hheeeeccEEEecccCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH-YGLFLSGRTLKGSLFGGW 317 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~ 317 (371)
.++....+.+.+++ |+|++|||+|....+..++++++++ |+++.+|....... .++ ...+.+++++.|+....
T Consensus 223 --~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~-~~~~~~~~~kel~l~gs~~~~- 297 (350)
T COG1063 223 --EDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDI-PLPAGLVVSKELTLRGSLRPS- 297 (350)
T ss_pred --cccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccC-ccCHHHHHhcccEEEeccCCC-
Confidence 33677778889998 9999999999988899999999997 99999998866432 222 23336799999984311
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCe-e-eEEEeC
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC-L-RSVIHM 369 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~-~-kvvi~~ 369 (371)
...+++.+++++.+|++++.+++++.++++++++||+.+.+... . |+++.+
T Consensus 298 -~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 298 -GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred -CcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 14589999999999999999999999999999999999987553 3 998864
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=355.12 Aligned_cols=340 Identities=21% Similarity=0.333 Sum_probs=275.0
Q ss_pred CCcCCCCccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEe
Q 017460 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVES 70 (371)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~ 70 (371)
|+.+|...-++++.++.+.+.+..+++.+++.|+++++||+|||.+++||++|++++.|.++ + ++|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~ 80 (360)
T PLN02586 1 MAKSPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTK 80 (360)
T ss_pred CCCChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEE
Confidence 88888877788888888888777799999999999999999999999999999999887542 1 6999999
Q ss_pred eCCCCCCCCCCCEEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeC
Q 017460 71 VGPGVTEFNEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS 149 (371)
Q Consensus 71 ~G~~v~~~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~ 149 (371)
+|++|++|++||||++.+. .+|+.|.+|+++++++|.+..+...+.. .+|.. ..|+|+||+++++
T Consensus 81 vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~-~~g~~-------------~~G~~aey~~v~~ 146 (360)
T PLN02586 81 LGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIG-HDGTK-------------NYGGYSDMIVVDQ 146 (360)
T ss_pred ECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccc-cCCCc-------------CCCccceEEEEch
Confidence 9999999999999986554 5799999999999999987653211000 00100 0248999999999
Q ss_pred CceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhH-HHHH
Q 017460 150 GCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC-EKAK 228 (371)
Q Consensus 150 ~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~-~~~~ 228 (371)
+.++++|+++++++++.+++.+.|+|+++.+...+++|++|||.|+|++|++++|+|+++|+ +|++++.+++++ +.++
T Consensus 147 ~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~ 225 (360)
T PLN02586 147 HFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN 225 (360)
T ss_pred HHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH
Confidence 99999999999999999999999999988555667899999999999999999999999999 788877766654 5568
Q ss_pred HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccE
Q 017460 229 AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRT 308 (371)
Q Consensus 229 ~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~ 308 (371)
++|++.+++++ +. +.+++.++ ++|+|||++|....+..++++++++ |+++.+|.......++.... +.++..
T Consensus 226 ~~Ga~~vi~~~--~~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~~~~~~~~~~~-~~~~~~ 297 (360)
T PLN02586 226 RLGADSFLVST--DP---EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPEKPLELPIFPL-VLGRKL 297 (360)
T ss_pred hCCCcEEEcCC--CH---HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCCCCCccCHHHH-HhCCeE
Confidence 99999999875 22 34555554 7999999999866789999999997 99999987543223332222 235677
Q ss_pred EEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 309 LKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 309 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+.++..+. ..++.++++++.++++++. + ++|+|+|+++||+.+.+++.. |++|.+
T Consensus 298 i~g~~~~~---~~~~~~~~~li~~g~i~~~--~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 353 (360)
T PLN02586 298 VGGSDIGG---IKETQEMLDFCAKHNITAD--I-ELIRMDEINTAMERLAKSDVRYRFVIDV 353 (360)
T ss_pred EEEcCcCC---HHHHHHHHHHHHhCCCCCc--E-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 77776543 2468999999999998753 4 689999999999999998876 999876
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=350.03 Aligned_cols=330 Identities=23% Similarity=0.353 Sum_probs=274.2
Q ss_pred eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhh-c-C-CC-CC-----eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAW-E-T-QW-PQ-----CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~-~-g-~~-~~-----~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++++++. +++.+.|.|++ .++||+|||.++++|++|+..+ . + .. +. ++|+|+++|+++++|++||
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGd 79 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPGD 79 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCCCCCCcccccceEEEEEEeCCCCCCCCCCC
Confidence 79999998875 99999999998 5999999999999999998643 2 2 12 21 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
+|++.+..+|+.|++|+.+.+++|..... .|.. . .|+|+||+.++++.++++|++++++
T Consensus 80 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~g~~-~------------------~G~~aey~~v~~~~~~~lP~~~s~~ 138 (347)
T PRK10309 80 AVACVPLLPCFTCPECLRGFYSLCAKYDF--IGSR-R------------------DGGNAEYIVVKRKNLFALPTDMPIE 138 (347)
T ss_pred EEEECCCcCCCCCcchhCcCcccCCCcce--eccC-C------------------CCccceeEEeehHHeEECcCCCCHH
Confidence 99999999999999999999999976432 2221 1 2489999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
+++++. +++++++++ +...+++|++|||+|+|++|++++|+|+++|++.|+++++++++++.++++|++++++++ .
T Consensus 139 ~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~--~ 214 (347)
T PRK10309 139 DGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSR--E 214 (347)
T ss_pred Hhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCc--c
Confidence 999875 566788875 677889999999999999999999999999995588999999999999999999999876 3
Q ss_pred chHHHHHHHHhCC-Ccc-EEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecc-h-heeeeccEEEecccCCCC
Q 017460 243 EPVQQVIKRITDG-GAD-YSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH-Y-GLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 243 ~~~~~~v~~~~~g-g~d-vVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~-~~~~~~~~i~g~~~~~~~ 318 (371)
.+ .+.+.+++.+ ++| +||||+|....+..++++++++ |+++.+|.......++.. . ..+.+++++.|++.+...
T Consensus 215 ~~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 292 (347)
T PRK10309 215 MS-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSS 292 (347)
T ss_pred cC-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccC
Confidence 34 4567777776 898 9999999877899999999997 999999976532222211 1 223468899988664221
Q ss_pred --cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 319 --PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 319 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
.+.++.++++++.++++++.++++++|+|+++++|++.+.+++.. |++++++
T Consensus 293 ~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 347 (347)
T PRK10309 293 PWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQIP 347 (347)
T ss_pred CcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeCC
Confidence 135688999999999998888899999999999999999888876 9999764
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=344.14 Aligned_cols=305 Identities=25% Similarity=0.332 Sum_probs=254.3
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC------CC-----eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW------PQ-----CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~------~~-----~~G~V~~~G~~v~~~~ 79 (371)
|||+++++.+.+ +++.++|.|+|+++||+|||.|++||+.|+.+++|.. |. ++|+|+++|++|+.|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 789999888866 8899999999999999999999999999999999862 11 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||||+... ..| . .|+|+||..++++.++++|+++
T Consensus 81 ~GdrV~~~~-~~~--------------------------~------------------~G~~AEy~~v~a~~~~~~P~~l 115 (326)
T COG0604 81 VGDRVAALG-GVG--------------------------R------------------DGGYAEYVVVPADWLVPLPDGL 115 (326)
T ss_pred CCCEEEEcc-CCC--------------------------C------------------CCcceeEEEecHHHceeCCCCC
Confidence 999999872 000 0 2589999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++++||++++.+.|||+++....++++|++|||+| +|++|.+++|+|+++|+ .++++++++++.++++++|+++++++
T Consensus 116 s~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y 194 (326)
T COG0604 116 SFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINY 194 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcC
Confidence 99999999999999999998889999999999998 59999999999999998 77777788888889999999999999
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~ 316 (371)
+ +.+|.+.+++++++ ++|+|||++|+. .+..++.+++++ |+++.+|...+.....++...+ .+..++.+.....
T Consensus 195 ~--~~~~~~~v~~~t~g~gvDvv~D~vG~~-~~~~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 270 (326)
T COG0604 195 R--EEDFVEQVRELTGGKGVDVVLDTVGGD-TFAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGS 270 (326)
T ss_pred C--cccHHHHHHHHcCCCCceEEEECCCHH-HHHHHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEeccee
Confidence 7 66799999999999 999999999985 788899999998 9999999876322333332222 3466666665543
Q ss_pred C--C-cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcC-Cee-eEEEeC
Q 017460 317 W--K-PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEG-KCL-RSVIHM 369 (371)
Q Consensus 317 ~--~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~-~~~-kvvi~~ 369 (371)
. . ..+.+.++.+++.+|++++. ++.+|++++...+..+.... +.. |++|++
T Consensus 271 ~~~~~~~~~~~~l~~~~~~g~l~~~--i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~ 326 (326)
T COG0604 271 RDPEALAEALAELFDLLASGKLKPV--IDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326 (326)
T ss_pred cchHHHHHHHHHHHHHHHcCCCcce--eccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence 3 1 12456668889999996655 67899999976666654444 666 999874
|
|
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=343.40 Aligned_cols=360 Identities=47% Similarity=0.845 Sum_probs=288.2
Q ss_pred ccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC---C------eEEEEEeeCCCCCCC
Q 017460 8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP---Q------CCRIVESVGPGVTEF 78 (371)
Q Consensus 8 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~---~------~~G~V~~~G~~v~~~ 78 (371)
.+..+|||.++.+++++++++++|.|++.++||+||+.++++|++|++.+.|.++ + ++|+|+++|++++.+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~~~~p~v~G~e~~G~V~~vG~~v~~~ 82 (373)
T cd08299 3 GKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVTPFPVILGHEAAGIVESVGEGVTTV 82 (373)
T ss_pred cccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCCCCCCccccccceEEEEEeCCCCccC
Confidence 3467799999999888899999999999999999999999999999999987542 1 699999999999999
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
++||+|++.+..+|+.|.+|++++++.|....... .|.. .++....-..|....+..+.|+|+||+++++++++++|+
T Consensus 83 ~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~ 161 (373)
T cd08299 83 KPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA 161 (373)
T ss_pred CCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCC
Confidence 99999999988999999999999999998754311 1111 000000000010011111246899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
++++++++++++++.+||+++.+.+++++|++|||+|+|++|++++++|+++|+.+|+++++++++++.++++|++++++
T Consensus 162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~ 241 (373)
T cd08299 162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECIN 241 (373)
T ss_pred CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEec
Confidence 99999999999999999999878889999999999999999999999999999867999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHh-ccCCceEEEecCCCCCCeeecchheeeeccEEEecccCC
Q 017460 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC-CDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGG 316 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l-~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 316 (371)
..+...++...+.+++.+++|+++|++|+...+..++..+ +.+ |+++.+|.......+++....+.++.++.++..+.
T Consensus 242 ~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 320 (373)
T cd08299 242 PQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQNLSINPMLLLTGRTWKGAVFGG 320 (373)
T ss_pred ccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCceeecCHHHHhcCCeEEEEEecC
Confidence 7532234677777777668999999999766778777765 465 99999997644334455443334578888887766
Q ss_pred CCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 317 WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
+..+..+.++++.+.++.+++.++++++|+++++.+||+.+.+++..|+++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~ 373 (373)
T cd08299 321 WKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF 373 (373)
T ss_pred CccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence 55445677788888888777777788999999999999999887766888764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=345.77 Aligned_cols=324 Identities=21% Similarity=0.323 Sum_probs=256.1
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-------C------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-------Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-------~------~~G~V~~~G~~v~~~~ 79 (371)
|||++++..+.++++.++|.|+|+++||+|||+|++||++|++.++|.++ + ++|+|+++|++ +.|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 68999986554499999999999999999999999999999999988531 1 59999999999 9999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||||+..+...|+.|.+|+++++++|........|.... .|+|+||+.++++.++++|+++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~------------------~G~~aey~~~~~~~~~~~P~~~ 141 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGL------------------HGFMREYFVDDPEYLVKVPPSL 141 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCC------------------CccceeEEEeccccEEECCCCC
Confidence 9999999988899999999999999998754322232101 2589999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhh------hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcC---ChhhHHHHHHc
Q 017460 160 PLEKICLLSCGLSAGLGAAWN------VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT---NPEKCEKAKAF 230 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~------~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~l 230 (371)
+ +. +.+..++++++.++.. ..+.++|++|||+|+|++|++++|+|+++|+ +|+++++ +++|++.++++
T Consensus 142 ~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~ 218 (355)
T cd08230 142 A-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL 218 (355)
T ss_pred C-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc
Confidence 8 44 4444466665554321 2235789999999999999999999999999 8999987 68899999999
Q ss_pred CCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecc-----hheeee
Q 017460 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH-----YGLFLS 305 (371)
Q Consensus 231 g~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-----~~~~~~ 305 (371)
|++. +++. ++++.+ . . ..+++|+|||++|+...+..++++++++ |+++.+|.......++++ ...+.+
T Consensus 219 Ga~~-v~~~--~~~~~~-~-~-~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~k 291 (355)
T cd08230 219 GATY-VNSS--KTPVAE-V-K-LVGEFDLIIEATGVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGELNRDLVLG 291 (355)
T ss_pred CCEE-ecCC--ccchhh-h-h-hcCCCCEEEECcCCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhhhhhHhhc
Confidence 9986 5654 333433 2 1 2238999999999876789999999997 999999976542233333 122356
Q ss_pred ccEEEecccCCCCcCCCHHHHHHHHHcCCC----CCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 306 GRTLKGSLFGGWKPKTDLPSLVNRYLKKEF----MVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 306 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
++++.|+.... ..++.++++++.++.+ .+.++++++|+++++.+||+.+.++. .|++|++
T Consensus 292 ~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~K~v~~~ 355 (355)
T cd08230 292 NKALVGSVNAN---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE-IKVVIEW 355 (355)
T ss_pred CcEEEEecCCc---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC-eEEEeeC
Confidence 88999876543 3578899999988762 35667899999999999999886543 5999864
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=342.45 Aligned_cols=324 Identities=25% Similarity=0.395 Sum_probs=271.2
Q ss_pred EEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhc-CCC-----CC-----eEEEEEeeCCCCCCCCCCCEE
Q 017460 16 AVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQW-----PQ-----CCRIVESVGPGVTEFNEGEHV 84 (371)
Q Consensus 16 ~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~-g~~-----~~-----~~G~V~~~G~~v~~~~~Gd~V 84 (371)
+++++++++++++++|.|+++++||+|||.++++|++|++.+. |.. +. ++|+|+++|++++.+ +||+|
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 4667777779999999999999999999999999999998763 322 11 699999999999887 99999
Q ss_pred EeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC------C
Q 017460 85 LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS------I 158 (371)
Q Consensus 85 ~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~------~ 158 (371)
++.+..+|++|.+|+++++++|..... .|.. .+ |+|+||+.++++.++++|+ +
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~--~g~~-~~------------------G~~ae~~~v~~~~~~~ip~~~~~~~~ 139 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKM--PGND-MQ------------------GGFASHIVVPAKGLCVVDEARLAAAG 139 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCc--cCcC-CC------------------CcccceEEechHHeEECCcccccccC
Confidence 999999999999999999999976543 2221 12 4899999999999999999 8
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++.++++.+.+++.++++++ ...++++|++|+|+|+|++|++++|+|++.|+ +|++++++++|++.++++|++.++++
T Consensus 140 ~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~~ 217 (349)
T TIGR03201 140 LPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLNP 217 (349)
T ss_pred CCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEecC
Confidence 99999999988999999987 56789999999999999999999999999999 89999999999999999999999987
Q ss_pred CCCC-chHHHHHHHHhCC-Ccc----EEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEec
Q 017460 239 NDNN-EPVQQVIKRITDG-GAD----YSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGS 312 (371)
Q Consensus 239 ~~~~-~~~~~~v~~~~~g-g~d----vVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~ 312 (371)
.+.+ .++.+.+++++++ |+| +||||+|+...+..++++++++ |+++.+|.......+++.. .+.++.++.++
T Consensus 218 ~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~-~~~~~~~~~g~ 295 (349)
T TIGR03201 218 KDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMAKTEYRLSN-LMAFHARALGN 295 (349)
T ss_pred ccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEEEECcCCCCcccCHHH-HhhcccEEEEE
Confidence 5311 3577788888887 886 8999999877788899999997 9999999765422333221 12346788877
Q ss_pred ccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 313 LFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+... ..++.++++++.++++++.+++ ++|+|+++++||+.+++++.. |+++++
T Consensus 296 ~~~~---~~~~~~~~~~i~~g~i~~~~~i-~~~~l~~~~~A~~~~~~~~~~~k~~~~~ 349 (349)
T TIGR03201 296 WGCP---PDRYPAALDLVLDGKIQLGPFV-ERRPLDQIEHVFAAAHHHKLKRRAILTP 349 (349)
T ss_pred ecCC---HHHHHHHHHHHHcCCCCcccce-EEecHHHHHHHHHHHHcCCccceEEecC
Confidence 6432 3578999999999999887777 479999999999999998877 888753
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=339.41 Aligned_cols=326 Identities=22% Similarity=0.335 Sum_probs=261.1
Q ss_pred EEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC-----CC-----eEEEEEeeCCCCCCCCCCCEE
Q 017460 15 AAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW-----PQ-----CCRIVESVGPGVTEFNEGEHV 84 (371)
Q Consensus 15 a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~-----~~-----~~G~V~~~G~~v~~~~~Gd~V 84 (371)
+++..+.++++++.+++.|+++++||+|||.+++||++|++++.|.+ |. ++|+|+++|++++.|++||||
T Consensus 9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV 88 (375)
T PLN02178 9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV 88 (375)
T ss_pred EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence 44555555568888999999999999999999999999999998754 21 699999999999999999999
Q ss_pred EeeecC-CCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhh
Q 017460 85 LTVFIG-ECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK 163 (371)
Q Consensus 85 ~~~~~~-~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~ 163 (371)
++.+.. +|+.|.+|+++++++|.+......+.. ..|. ...|+|+||+.++++.++++|+++++++
T Consensus 89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~-~~g~-------------~~~G~~aey~~v~~~~~~~lP~~ls~~~ 154 (375)
T PLN02178 89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRS-SDGT-------------RNQGGYSDVIVVDHRFVLSIPDGLPSDS 154 (375)
T ss_pred EEcCccCCCCCChhHhCcchhcCCCccccccccc-cCCC-------------cCCCccccEEEEchHHeEECCCCCCHHH
Confidence 876654 699999999999999998653211000 0010 0025899999999999999999999999
Q ss_pred hhhcchhhhhHHhHhhhhcC-CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhh-HHHHHHcCCceEeCCCCC
Q 017460 164 ICLLSCGLSAGLGAAWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK-CEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 164 aa~~~~~~~~a~~~l~~~~~-~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~lg~~~vi~~~~~ 241 (371)
++++++++.|+|+++..... .++|++|+|.|+|++|++++|+|+++|+ +|++++.++++ ++.++++|++++++++
T Consensus 155 aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~-- 231 (375)
T PLN02178 155 GAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTT-- 231 (375)
T ss_pred cchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCc--
Confidence 99999999999998743332 3689999999999999999999999999 88888776554 6788999999999875
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 321 (371)
+. +.+.+.++ ++|+|||++|....+..++++++++ |+++.+|.......++... .+.+++++.|+..+. ..
T Consensus 232 ~~---~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~~~~~~~~~~-~~~~~~~i~g~~~~~---~~ 302 (375)
T PLN02178 232 DS---QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPEKPLDLPIFP-LVLGRKMVGGSQIGG---MK 302 (375)
T ss_pred CH---HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCCCCCccCHHH-HHhCCeEEEEeCccC---HH
Confidence 21 34555554 7999999999876789999999997 9999999764322233222 224688898876544 34
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
++.++++++.+|++++. + ++|+|+++++||+.+.+++.. |++|.+
T Consensus 303 ~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 348 (375)
T PLN02178 303 ETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSDVRYRFVIDV 348 (375)
T ss_pred HHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence 68899999999998754 4 679999999999999998876 999876
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=336.25 Aligned_cols=353 Identities=48% Similarity=0.867 Sum_probs=292.3
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCCCCE
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNEGEH 83 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~Gd~ 83 (371)
+||+++.+.+.++++++.+.|.+++++|+||+.++++|++|++.+.|.++. ++|+|+++|++++.+++||+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPTPLPVILGHEGAGIVESIGPGVTTLKPGDK 80 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCCCCCcccccceeEEEEEeCCCcccCCCCCE
Confidence 578999988877999999999999999999999999999999998876431 69999999999999999999
Q ss_pred EEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 84 VLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 84 V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
|++.+..+|+.|.+|+++++++|....+.. .|.. .+|..++..+|....+..+.|+|++|+.++++.++++|++++++
T Consensus 81 Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~ 159 (365)
T cd05279 81 VIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLE 159 (365)
T ss_pred EEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCHH
Confidence 999988999999999999999998755321 2222 23444444444444443345799999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
+++.+.+++.+||+++.+.+++++|++|||+|+|++|++++++|+++|+..|+++++++++++.++++|++++++.++.+
T Consensus 160 ~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~ 239 (365)
T cd05279 160 KVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQD 239 (365)
T ss_pred HhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeeccccccc
Confidence 99999989999999987888999999999999999999999999999996688888899999999999999999876322
Q ss_pred chHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhc-cCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCC
Q 017460 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC-DGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 321 (371)
.++.+.+++++++++|++||++|....+..++++++ ++ |+++.+|.........+....+.++.++.|++++.+....
T Consensus 240 ~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 318 (365)
T cd05279 240 KPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPSGTEATLDPNDLLTGRTIKGTVFGGWKSKD 318 (365)
T ss_pred chHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCCCCceeeCHHHHhcCCeEEEEeccCCchHh
Confidence 267788888775599999999987668899999999 86 9999998653222334443333457788888766655566
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEE
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 367 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi 367 (371)
.+..+++++.++.+++.++++++|+++++.+||+.+.+++..|+++
T Consensus 319 ~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~ 364 (365)
T cd05279 319 SVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTIL 364 (365)
T ss_pred HHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeee
Confidence 7889999999999887666789999999999999998877667776
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=332.33 Aligned_cols=311 Identities=22% Similarity=0.329 Sum_probs=259.2
Q ss_pred EEEEecCCC----CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCCCCC
Q 017460 15 AAVAWGAGQ----PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 15 a~~~~~~~~----~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~~~~ 80 (371)
|+.+.+++. .++++++|.|+|+++||+|||.+++||++|++.+.|.++ + ++|+|+++|+++++|++
T Consensus 1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (329)
T TIGR02822 1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAV 80 (329)
T ss_pred CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCC
Confidence 345555553 489999999999999999999999999999999988643 1 69999999999999999
Q ss_pred CCEEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 81 GEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 81 Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
||+|++.+. .+|+.|++|+++++++|.+... .|.. .+ |+|+||+.++++.++++|+++
T Consensus 81 Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~ 139 (329)
T TIGR02822 81 GDRVGIAWLRRTCGVCRYCRRGAENLCPASRY--TGWD-TD------------------GGYAEYTTVPAAFAYRLPTGY 139 (329)
T ss_pred CCEEEEcCccCcCCCChHHhCcCcccCCCccc--CCcc-cC------------------CcceeEEEeccccEEECCCCC
Confidence 999987664 4699999999999999987553 2322 22 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++++.+++++.|||+++ ..+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++.++++|+++++++.
T Consensus 140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~ 217 (329)
T TIGR02822 140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAY 217 (329)
T ss_pred CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccc
Confidence 9999999999999999998 56889999999999999999999999999999 899999999999999999999998753
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-CeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+.. .+++|+++++.+....+..++++++++ |+++.+|..... ..++.. ..+.+++++.++....
T Consensus 218 --~~~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~-~~~~~~~~i~g~~~~~-- 282 (329)
T TIGR02822 218 --DTP---------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTDTPPLNYQ-RHLFYERQIRSVTSNT-- 282 (329)
T ss_pred --ccC---------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCccCCCCCHH-HHhhCCcEEEEeecCC--
Confidence 111 126899999888777899999999997 999999975332 122221 1224678888775432
Q ss_pred cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 319 PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
+.++.++++++.+++++ +++++|+|+++++||+.+.+++.. |+||
T Consensus 283 -~~~~~~~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl 328 (329)
T TIGR02822 283 -RADAREFLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVL 328 (329)
T ss_pred -HHHHHHHHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence 34678889999999875 357999999999999999999888 8886
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=333.58 Aligned_cols=337 Identities=27% Similarity=0.404 Sum_probs=278.6
Q ss_pred eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC--C--------eEEEEEeeCCCCCC------
Q 017460 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP--Q--------CCRIVESVGPGVTE------ 77 (371)
Q Consensus 14 ~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~--~--------~~G~V~~~G~~v~~------ 77 (371)
||+++.++++.+++.+.+.|.++++||+|||.++++|++|+..+.|.++ . ++|+|+++|++++.
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~ 81 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence 7899999887799999999999999999999999999999998888654 1 69999999999986
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCC-CccceeccCcccccccCccceeeEEEeeCC-ceEEC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD-QQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKV 155 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~-g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~-~~~~~ 155 (371)
|++||+|++.+..+|+.|.+|+.+.+++|...... |.. .+ +. ....|+|+||+.++++ .++++
T Consensus 82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~--~~~-~~~~~------------~~~~g~~a~~~~v~~~~~~~~l 146 (361)
T cd08231 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY--GHE-ASCDD------------PHLSGGYAEHIYLPPGTAIVRV 146 (361)
T ss_pred cCCCCEEEEcccCCCCCChhHhCcCccccccchhc--ccc-ccccC------------CCCCcccceEEEecCCCceEEC
Confidence 99999999999999999999999999999876542 211 00 00 0012589999999986 89999
Q ss_pred CCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 156 SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 156 P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
|++++.+++++++++++|||+++.+....+++++|||+|+|++|++++++|+++|+++|+++++++++.+.++++|++.+
T Consensus 147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~v 226 (361)
T cd08231 147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADAT 226 (361)
T ss_pred CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeE
Confidence 99999999999988999999998666656699999999999999999999999999789999999999999999999988
Q ss_pred eCCCCCC-chHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh-eeeeccEEEec
Q 017460 236 LNPNDNN-EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG-LFLSGRTLKGS 312 (371)
Q Consensus 236 i~~~~~~-~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~ 312 (371)
++++... ..+...+++++++ ++|++||++|+...+..++++++++ |+++.+|........++... .+.++.++.++
T Consensus 227 i~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (361)
T cd08231 227 IDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIGV 305 (361)
T ss_pred EcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCCccccCHHHHhhcccEEEEc
Confidence 8776211 1233577888887 9999999998766789999999997 99999987643223333332 23468888887
Q ss_pred ccCCCCcCCCHHHHHHHHHcC--CCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 313 LFGGWKPKTDLPSLVNRYLKK--EFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
.... .+++.++++++.++ .+.+.++++++|+++++++||+.+.++...|++|.+
T Consensus 306 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 361 (361)
T cd08231 306 HNYD---PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP 361 (361)
T ss_pred ccCC---chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence 6543 35788899999888 566777788999999999999999887766999864
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=332.75 Aligned_cols=324 Identities=30% Similarity=0.479 Sum_probs=275.7
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC----------------CCC-----eEEEEEee
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ----------------WPQ-----CCRIVESV 71 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~----------------~~~-----~~G~V~~~ 71 (371)
|||++++++++ ++++++|.|++.++||+||+.++++|++|++.+.+. .+. ++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 79999998775 999999999999999999999999999998765421 111 69999999
Q ss_pred CCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCc
Q 017460 72 GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC 151 (371)
Q Consensus 72 G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~ 151 (371)
|++++.+++||+|++.+..+|+.|.+|++++.++|..... .|+. . ..|+|++|+.++.+.
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~-----------------~~g~~a~~~~~~~~~ 139 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF--IGLG-G-----------------GGGGFAEYVVVPAYH 139 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce--eccC-C-----------------CCCceeeEEEechHH
Confidence 9999999999999999999999999999999999975432 2211 0 024899999999999
Q ss_pred eEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC
Q 017460 152 AVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231 (371)
Q Consensus 152 ~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg 231 (371)
++++|++++.++++.+ .++.+||+++ ..+++++|++|||+|+|.+|++++|+|+.+|+++|+++++++++.+.++++|
T Consensus 140 ~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~g 217 (351)
T cd08233 140 VHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELG 217 (351)
T ss_pred eEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC
Confidence 9999999999999877 5788999998 7888999999999999999999999999999978999999999999999999
Q ss_pred CceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh-eeeeccEE
Q 017460 232 VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG-LFLSGRTL 309 (371)
Q Consensus 232 ~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i 309 (371)
++.+++++ +.++.+.+++++++ ++|+|||++|....++.++++++++ |+++.+|..... ..++.. .+.+++++
T Consensus 218 a~~~i~~~--~~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i 292 (351)
T cd08233 218 ATIVLDPT--EVDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWEKP--ISFNPNDLVLKEKTL 292 (351)
T ss_pred CCEEECCC--ccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCCCC--CccCHHHHHhhCcEE
Confidence 99999987 56788889888887 8999999999766889999999997 999999976532 223322 23468899
Q ss_pred EecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhH-HHHHHHHHcCCe--eeEEE
Q 017460 310 KGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDI-NQAFNLMKEGKC--LRSVI 367 (371)
Q Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~a~~~~~~~~~--~kvvi 367 (371)
.++.... ..++.++++++.++++++.++++++|+++|+ ++|++.+.+++. .|++|
T Consensus 293 ~g~~~~~---~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~ 350 (351)
T cd08233 293 TGSICYT---REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV 350 (351)
T ss_pred EEEeccC---cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence 8876432 4679999999999999887778899999996 789999888775 38887
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=330.99 Aligned_cols=332 Identities=21% Similarity=0.304 Sum_probs=269.4
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC-----CC-----eEEEEEeeCCCCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW-----PQ-----CCRIVESVGPGVTEFN 79 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~-----~~-----~~G~V~~~G~~v~~~~ 79 (371)
...++|+++..+++++++++++.|+++++||+|||.+++||++|++.+.|.+ +. ++|+|+++|+++++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~ 86 (357)
T PLN02514 7 EKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFT 86 (357)
T ss_pred CceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCccccc
Confidence 3458999999999999999999999999999999999999999999888754 21 6999999999999999
Q ss_pred CCCEEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 80 EGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 80 ~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
+||+|++.+. .+|+.|.+|+++++++|....+...+.. ..|. ...|+|+||++++.+.++++|++
T Consensus 87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~-~~g~-------------~~~G~~aey~~v~~~~~~~iP~~ 152 (357)
T PLN02514 87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY-TDGK-------------PTQGGFASAMVVDQKFVVKIPEG 152 (357)
T ss_pred CCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc-cCCc-------------cCCCccccEEEEchHHeEECCCC
Confidence 9999986554 4799999999999999987643210000 0010 01258999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEeC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLN 237 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi~ 237 (371)
+++++++.+++++.+||+++......++|++|+|+|+|++|++++|+|+++|+ ++++++++++++..+ +++|++.+++
T Consensus 153 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~ 231 (357)
T PLN02514 153 MAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLV 231 (357)
T ss_pred CCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEec
Confidence 99999999999999999998655556899999999999999999999999999 788888888777655 6799988876
Q ss_pred CCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCC
Q 017460 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGW 317 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 317 (371)
+. +. +.+.+.+. ++|++||++|....+..++++++++ |+++.+|.......++.. ..+.+++++.|++.+.
T Consensus 232 ~~--~~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~~- 302 (357)
T PLN02514 232 SS--DA---AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVINTPLQFVTP-MLMLGRKVITGSFIGS- 302 (357)
T ss_pred CC--Ch---HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCCCCCcccHH-HHhhCCcEEEEEecCC-
Confidence 64 21 34455443 7999999999766789999999997 999999976432222222 2235688999887654
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
..++.++++++.+++++ +++ ++|+++++.+||+.+.+++.. |++|.++
T Consensus 303 --~~~~~~~~~~~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~ 351 (357)
T PLN02514 303 --MKETEEMLEFCKEKGLT--SMI-EVVKMDYVNTAFERLEKNDVRYRFVVDVA 351 (357)
T ss_pred --HHHHHHHHHHHHhCCCc--CcE-EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence 34688999999999864 445 689999999999999998887 9999875
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=327.28 Aligned_cols=352 Identities=34% Similarity=0.593 Sum_probs=280.5
Q ss_pred eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCCC
Q 017460 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 11 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~G 81 (371)
++|||+++.++++++++.+.+.|++.++||+||+.++++|++|+++..|.++. ++|+|+++|+++..+++|
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~G 80 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPTPLPAVLGHEGAGVVEAVGSAVTGLKPG 80 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCCCCCcccccceeEEEEEeCCCcccCCCC
Confidence 58999999998777999999999999999999999999999999998875431 699999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccc--cccCccceeeEEEeeCCceEECCCC
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVY--HYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~--~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
|+|++.+. .|+.|.+|+.+..++|.+..... .|.. .+|..-....+.+.+ +....|+|++|++++++.++++|++
T Consensus 81 d~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~ 158 (365)
T cd08278 81 DHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD 158 (365)
T ss_pred CEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence 99999764 89999999999999998654321 1111 111000000000000 0112368999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++.++++.+++++.+|++++.+...++++++|||+|+|++|++++++|+++|++++++++++++|.+.++++|++.++++
T Consensus 159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~ 238 (365)
T cd08278 159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINP 238 (365)
T ss_pred CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecC
Confidence 99999999999999999998788889999999999989999999999999999779999999999999999999999988
Q ss_pred CCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCCC
Q 017460 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGGW 317 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~ 317 (371)
+ ..++.+.+.++++.++|+++|++|+...+..++++++++ |+++.+|.........++...+ .++.++.++.....
T Consensus 239 ~--~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (365)
T cd08278 239 K--EEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDS 315 (365)
T ss_pred C--CcCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCc
Confidence 6 557778888888339999999999766889999999997 9999998753222223333332 45788877654332
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEe
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIH 368 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~ 368 (371)
...+.+.++++++.++++.+.+++ +.|+++++.+|++.+.++...|++|+
T Consensus 316 ~~~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~~k~~~~ 365 (365)
T cd08278 316 VPQEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKVIKPVLR 365 (365)
T ss_pred ChHHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCceEEEEC
Confidence 223456788889999988554444 68999999999999988877788874
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=291.88 Aligned_cols=305 Identities=22% Similarity=0.259 Sum_probs=260.5
Q ss_pred ceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCC
Q 017460 10 VITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTE 77 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~ 77 (371)
|...+.+++++.|.. ++++..|.|+|.++|++||-.|+|+|..|+.+.+|.+.+ .+|+|+++|++|++
T Consensus 6 p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvtd 85 (336)
T KOG1197|consen 6 PPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVTD 85 (336)
T ss_pred CchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCccc
Confidence 445588888888765 999999999999999999999999999999999998832 49999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
+++||||+... + .|.|+|+..+|...++++|+
T Consensus 86 rkvGDrVayl~------------------------------~------------------~g~yaee~~vP~~kv~~vpe 117 (336)
T KOG1197|consen 86 RKVGDRVAYLN------------------------------P------------------FGAYAEEVTVPSVKVFKVPE 117 (336)
T ss_pred cccccEEEEec------------------------------c------------------chhhheeccccceeeccCCc
Confidence 99999998762 2 24899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
.+++.+||++...+.||+.-+++..++++|++||++. ||++|++++|++++.|+ .+|++.++.+|++.+++.|+++.|
T Consensus 118 ~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h~I 196 (336)
T KOG1197|consen 118 AITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEHPI 196 (336)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCccee
Confidence 9999999999999999999998999999999999996 69999999999999999 999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-CeeecchheeeeccEEE-ecc
Q 017460 237 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAHYGLFLSGRTLK-GSL 313 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~i~-g~~ 313 (371)
+++ .+++.+++.++|++ |+|+++|.+|. +++...+.+|++. |.++.+|..++. .++++..+. -+.+++. ++.
T Consensus 197 ~y~--~eD~v~~V~kiTngKGVd~vyDsvG~-dt~~~sl~~Lk~~-G~mVSfG~asgl~~p~~l~~ls-~k~l~lvrpsl 271 (336)
T KOG1197|consen 197 DYS--TEDYVDEVKKITNGKGVDAVYDSVGK-DTFAKSLAALKPM-GKMVSFGNASGLIDPIPLNQLS-PKALQLVRPSL 271 (336)
T ss_pred ecc--chhHHHHHHhccCCCCceeeeccccc-hhhHHHHHHhccC-ceEEEeccccCCCCCeehhhcC-hhhhhhccHhh
Confidence 998 78999999999999 99999999998 4899999999997 999999987663 234433222 2344443 334
Q ss_pred cCCCCcCCC----HHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 314 FGGWKPKTD----LPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 314 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
++....+.. ..+++.++.++.++++ |.|+|||+++.+|...+++..+. |+++.+.
T Consensus 272 ~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~ypls~vadA~~diesrktvGkvlLlp~ 331 (336)
T KOG1197|consen 272 LGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYPLSKVADAHADIESRKTVGKVLLLPG 331 (336)
T ss_pred hcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecchHHHHHHHHHHHhhhccceEEEeCC
Confidence 333322222 2345666678887776 88999999999999999999988 9988764
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=320.81 Aligned_cols=351 Identities=38% Similarity=0.680 Sum_probs=281.4
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCCCCE
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNEGEH 83 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~Gd~ 83 (371)
|||+++.+++.++++.++|.|++++++|+||+.++++|++|+..+.|.++. ++|+|+++|++++.+++||+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAPLPAVLGHEGAGVVEEVGPGVTGVKPGDH 80 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCCCCCccccccceEEEEEeCCCccccCCCCE
Confidence 799999998878999999999999999999999999999999988775431 69999999999999999999
Q ss_pred EEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhh
Q 017460 84 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK 163 (371)
Q Consensus 84 V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~ 163 (371)
|+..+..+|++|.+|++++.+.|......-.|.. .++..++..-|...+.....|+|++|+.++++.++++|++++.++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~ 159 (363)
T cd08279 81 VVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDR 159 (363)
T ss_pred EEECCCCCCCCChhhcCCCcccCccccccccccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCChHH
Confidence 9999999999999999999999986532101100 000000000011111112246899999999999999999999999
Q ss_pred hhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 164 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 164 aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
++.+++++.+||.++.+..++.++++|||+|+|.+|++++++|+..|+.+|+++++++++.+.++++|++++++++ ..
T Consensus 160 aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~--~~ 237 (363)
T cd08279 160 AALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNAS--ED 237 (363)
T ss_pred eehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCC--Cc
Confidence 9999999999999988888999999999998899999999999999995599999999999999999999899886 55
Q ss_pred hHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCCCCcCC
Q 017460 244 PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 244 ~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~ 321 (371)
++...+++++.+ ++|++||++++...+..++++++++ |+++.+|.........+....+ .++.++.++.+.......
T Consensus 238 ~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (363)
T cd08279 238 DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRR 316 (363)
T ss_pred cHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHH
Confidence 788888888766 8999999999766789999999997 9999998654222223333222 246666666544333345
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEE
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 367 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi 367 (371)
.+.++++++.++.+++.++++++|+++++.+|++.+.+++..|.||
T Consensus 317 ~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 317 DIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred HHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 7888999999999876655678999999999999998887665554
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=316.91 Aligned_cols=332 Identities=25% Similarity=0.333 Sum_probs=273.1
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++.+++. +++.+.+.|.+.++||+|||.++++|++|++.+.|.++. ++|+|+++|++++++++||
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd 79 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD 79 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence 79999999886 899999999999999999999999999999888765431 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC--ceEECCCCCC
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAP 160 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~~P~~~~ 160 (371)
+|++.+..+|+.|..|..++++.|.+... |.. . + ....|+|+||+.++.+ .++++|++++
T Consensus 80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~---~~~-~-~-------------~~~~g~~~~y~~v~~~~~~~~~lP~~~~ 141 (351)
T cd08285 80 RVIVPAITPDWRSVAAQRGYPSQSGGMLG---GWK-F-S-------------NFKDGVFAEYFHVNDADANLAPLPDGLT 141 (351)
T ss_pred EEEEcCcCCCCCCHHHHCcCcccCcCCCC---Ccc-c-c-------------CCCCcceeEEEEcchhhCceEECCCCCC
Confidence 99998888999999999999999986421 100 0 0 0012589999999974 8999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
.++++.++..+.+|++++ +.++++++++|||+|+|++|++++|+|+++|++.|+++++++++.+.++++|++.+++++
T Consensus 142 ~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~- 219 (351)
T cd08285 142 DEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK- 219 (351)
T ss_pred HHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCC-
Confidence 999999988999999996 778899999999999899999999999999996799999999999999999999999886
Q ss_pred CCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee---eeccEEEecccCC
Q 017460 241 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF---LSGRTLKGSLFGG 316 (371)
Q Consensus 241 ~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~---~~~~~i~g~~~~~ 316 (371)
..++.+.+..++.+ ++|++||++|+...+..++++++++ |+++.+|.........++...+ .+..++.+.....
T Consensus 220 -~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 297 (351)
T cd08285 220 -NGDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPG 297 (351)
T ss_pred -CCCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCceeecChhhhhhhccccEEEEeecCC
Confidence 56788888888777 8999999999877889999999997 9999998765432333332111 2344555433211
Q ss_pred CCcCCCHHHHHHHHHcCCCCCCcc-eeeeecchhHHHHHHHHHcCCe--eeEEEeC
Q 017460 317 WKPKTDLPSLVNRYLKKEFMVDEF-ITHNLLFEDINQAFNLMKEGKC--LRSVIHM 369 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~a~~~~~~~~~--~kvvi~~ 369 (371)
..+++.++++++.++++++..+ ++++|+++++.+|++.+.+++. .|++|.+
T Consensus 298 --~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 298 --GRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred --ccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 2357899999999999887443 4456999999999999988863 4999864
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=314.60 Aligned_cols=326 Identities=27% Similarity=0.378 Sum_probs=272.6
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC-------------CC------eEEEEEeeCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW-------------PQ------CCRIVESVGP 73 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~-------------~~------~~G~V~~~G~ 73 (371)
|||++++++++ +++++.+.|++.+++|+||+.++++|+.|+..+.|.+ .+ ++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 78999998876 9999999999999999999999999999998887742 11 5999999999
Q ss_pred CCC--CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC-
Q 017460 74 GVT--EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG- 150 (371)
Q Consensus 74 ~v~--~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~- 150 (371)
+++ .|++||+|++.+..+|+.|++|+++++++|....+ .|+. .. ..|+|++|+.++++
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~~----------------~~g~~~~~~~~~~~~ 140 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL--YGFQ-NN----------------VNGGMAEYMRFPKEA 140 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc--eeec-cC----------------CCCcceeeEEccccc
Confidence 999 89999999999999999999999999999975432 3331 00 12589999999988
Q ss_pred ceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 151 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 151 ~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
.++++|+++++++++.+ .+++++|+++ +.++++++++|||.|+|.+|++++++|+++|+..++++++++++.+.++++
T Consensus 141 ~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~ 218 (350)
T cd08256 141 IVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKF 218 (350)
T ss_pred ceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHc
Confidence 68899999999999988 7999999997 788999999999987899999999999999986788899999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEE
Q 017460 231 GVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTL 309 (371)
Q Consensus 231 g~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i 309 (371)
|++.+++++ ..++.+.+.+++++ ++|++||++|+...+..++++++++ |+++.+|.......+++......++.++
T Consensus 219 g~~~v~~~~--~~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~i 295 (350)
T cd08256 219 GADVVLNPP--EVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGDPVTVDWSIIGDRKELDV 295 (350)
T ss_pred CCcEEecCC--CcCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCCCCccChhHhhcccccEE
Confidence 998888876 56788888888887 8999999999756788999999997 9999998654322222222212346777
Q ss_pred EecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 310 KGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
.++.... ..+.++++++.++.+++.++++++|+++++.+|++.+++++.. |+++
T Consensus 296 ~~~~~~~----~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 296 LGSHLGP----YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred EEeccCc----hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 7765432 3688899999999987765567999999999999999888766 7764
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=312.77 Aligned_cols=325 Identities=21% Similarity=0.347 Sum_probs=266.7
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++++++. ++++++|.|+++++||+||+.++++|++|++.+.|..+ + ++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 79 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE 79 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence 78999998875 99999999999999999999999999999998887653 1 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
+|++.+...|+.|.+|+++++++|.+... .++. . .|+|+||+.++.+.++++|++++.+
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~~~~~~~~~ip~~~~~~ 138 (339)
T PRK10083 80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV--LGVH-R------------------DGGFSEYAVVPAKNAHRIPDAIADQ 138 (339)
T ss_pred EEEEccccCCCCCccccCcCcccCCCCce--EEEc-c------------------CCcceeeEEechHHeEECcCCCCHH
Confidence 99999999999999999999999976543 1211 1 2489999999999999999999998
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHH-cCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKA-RGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
+++.+ .++.+++.+ .+..++++|++|+|+|+|++|++++|+|+. +|+..+++++++++|++.++++|++.+++++
T Consensus 139 ~a~~~-~~~~~a~~~-~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~-- 214 (339)
T PRK10083 139 YAVMV-EPFTIAANV-TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNA-- 214 (339)
T ss_pred HHhhh-chHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCc--
Confidence 87744 578888864 477889999999999999999999999996 6996688899999999999999999999886
Q ss_pred CchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcC
Q 017460 242 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPK 320 (371)
Q Consensus 242 ~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~ 320 (371)
+.++.+.+.. .+ ++|++||++|+...+..++++++++ |+++.+|.......+.. ...+.+++++.+... ..
T Consensus 215 ~~~~~~~~~~--~g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~~~~~~~----~~ 286 (339)
T PRK10083 215 QEPLGEALEE--KGIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSEPSEIVQ-QGITGKELSIFSSRL----NA 286 (339)
T ss_pred cccHHHHHhc--CCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCceecH-HHHhhcceEEEEEec----Ch
Confidence 4456665533 23 5789999999766899999999997 99999987543222211 111234666666543 13
Q ss_pred CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcC-Cee-eEEEeCCC
Q 017460 321 TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEG-KCL-RSVIHMPK 371 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~-~~~-kvvi~~~~ 371 (371)
..+.++++++.++++++.++++++|+++++++|++.+.++ ... |+++++++
T Consensus 287 ~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 287 NKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred hhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 5788999999999988765567999999999999998754 344 99998764
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=319.80 Aligned_cols=320 Identities=17% Similarity=0.216 Sum_probs=255.2
Q ss_pred eeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhh-cCCC-----------CC-----eEEEEEeeCC
Q 017460 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW-ETQW-----------PQ-----CCRIVESVGP 73 (371)
Q Consensus 11 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~-~g~~-----------~~-----~~G~V~~~G~ 73 (371)
|+|||+++.+++. ++++++|.|+++++||+|||.++|||++|++.+ .|.. |. ++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 5789999999886 999999999999999999999999999999876 4531 11 5999999999
Q ss_pred CCC-CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC--
Q 017460 74 GVT-EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-- 150 (371)
Q Consensus 74 ~v~-~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~-- 150 (371)
+|+ .|++||||++.+...|+.|..|. + .|+. .+ |+|+||++++++
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~------------~g~~-~~------------------G~~aey~~v~~~~~ 127 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCP-G------------YSYT-YP------------------GGLATYHIIPNEVM 127 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCC-C------------cccc-CC------------------CcceEEEEecHHhc
Confidence 998 59999999999988899888772 1 1111 22 489999999987
Q ss_pred --ceEECCCCCChhhhhhcchhhh---hHHhHh--------hhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcC--CCEE
Q 017460 151 --CAVKVSSIAPLEKICLLSCGLS---AGLGAA--------WNVADISKGSTVVIFG-LGTVGLSVAQGAKARG--ASRI 214 (371)
Q Consensus 151 --~~~~~P~~~~~~~aa~~~~~~~---~a~~~l--------~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G--~~~v 214 (371)
.++++|+++++++++++. +++ +++.++ .+.+++++|++|+|+| +|++|++++|+|+++| +.+|
T Consensus 128 ~~~~~~lP~~l~~~~aal~e-pl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V 206 (410)
T cd08238 128 EQDCLLIYEGDGYAEASLVE-PLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL 206 (410)
T ss_pred cCCeEECCCCCCHHHHhhcc-hHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence 689999999999998663 222 233332 2457789999999997 5999999999999975 4579
Q ss_pred EEEcCChhhHHHHHHc--------CCc-eEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceE
Q 017460 215 IGVDTNPEKCEKAKAF--------GVT-EFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLA 284 (371)
Q Consensus 215 i~~~~~~~~~~~~~~l--------g~~-~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~ 284 (371)
++++++++|++.++++ |++ .++++++ ..++.+.+++++++ ++|++||++|....+..++++++++ |++
T Consensus 207 i~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~-~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~ 284 (410)
T cd08238 207 VVTDVNDERLARAQRLFPPEAASRGIELLYVNPAT-IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCL 284 (410)
T ss_pred EEEcCCHHHHHHHHHhccccccccCceEEEECCCc-cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeE
Confidence 9999999999999997 776 5677642 25688888888888 9999999998777899999999997 888
Q ss_pred EEecCCC-CCCeeecchhe-eeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCe
Q 017460 285 VTLGVPK-LKPEVAAHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC 362 (371)
Q Consensus 285 v~~g~~~-~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~ 362 (371)
+.++... .....+++... +.+++++.|+..+. ..++.++++++.++++++.++++++|+|+++++||+.+. ++.
T Consensus 285 v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~ 360 (410)
T cd08238 285 NFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGN---TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIP 360 (410)
T ss_pred EEEEccCCCCccccccHHHhhhcCcEEEEeCCCC---HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccC
Confidence 7764422 11112333222 35688999876543 357899999999999999888999999999999999998 555
Q ss_pred e-eEEEeCC
Q 017460 363 L-RSVIHMP 370 (371)
Q Consensus 363 ~-kvvi~~~ 370 (371)
. |++|.++
T Consensus 361 ~gKvvl~~~ 369 (410)
T cd08238 361 GGKKLIYTQ 369 (410)
T ss_pred CceEEEECC
Confidence 5 9999874
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=310.22 Aligned_cols=320 Identities=23% Similarity=0.371 Sum_probs=269.3
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++++++.++++++.|.|+++++||+||+.++++|++|+..+.|..+. ++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD 80 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence 799999998667999999999999999999999999999999988775421 6999999999999999999
Q ss_pred EEEeee-cCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 83 HVLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 83 ~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
+|++.+ ...|+.|.+|..++++.|..... .|.. . .|+|++|+.++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~--~~~~-~------------------~g~~a~~~~v~~~~~~~lp~~~~~ 139 (333)
T cd08296 81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV--TGVT-R------------------DGGYAEYMLAPAEALARIPDDLDA 139 (333)
T ss_pred EEEeccccCCCCCChhhhCcCcccCCCCCc--cCcc-c------------------CCcceeEEEEchhheEeCCCCCCH
Confidence 998855 46799999999999999987653 2221 1 148999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
++++.+++++.+|++++ ...+++++++|||+|+|++|++++++|+++|+ +|+++++++++++.++++|++++++++
T Consensus 140 ~~aa~l~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~-- 215 (333)
T cd08296 140 AEAAPLLCAGVTTFNAL-RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTS-- 215 (333)
T ss_pred HHhhhhhhhhHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCC--
Confidence 99999999999999988 44589999999999999999999999999999 899999999999999999999999886
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh-eeeeccEEEecccCCCCcC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG-LFLSGRTLKGSLFGGWKPK 320 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~ 320 (371)
..++.+.++++ +++|++||++|....+..++++++++ |+++.+|.... ..+++.. .+.+++++.++..+. .
T Consensus 216 ~~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~~---~ 287 (333)
T cd08296 216 KEDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAAGE--PVAVSPLQLIMGRKSIHGWPSGT---A 287 (333)
T ss_pred CccHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCCC--CCCcCHHHHhhcccEEEEeCcCC---H
Confidence 45576667665 37999999997666889999999997 99999987653 2233322 224688998876433 2
Q ss_pred CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 321 TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
.++..+++++.+++++. ++ ++|+++++.+||+.+.+++.+ |+||+
T Consensus 288 ~~~~~~~~~~~~~~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 288 LDSEDTLKFSALHGVRP--MV-ETFPLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred HHHHHHHHHHHhCCCCc--eE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence 46778888888777543 34 689999999999999998887 98874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=310.19 Aligned_cols=331 Identities=29% Similarity=0.407 Sum_probs=274.8
Q ss_pred eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~G 81 (371)
|||+++.+++. +++.+.|.|.+ .+++|+||+.++++|++|+..+.|.++. ++|+|+++|++++.+++|
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG 79 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence 68999998876 89999999999 9999999999999999999998886542 699999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC--ceEECCCCC
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIA 159 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~~P~~~ 159 (371)
|+|++.+..+|+.|.+|.++...+|....+..++.. ...|+|++|++++++ .++++|+++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~v~~~~~~~~~lP~~~ 141 (347)
T cd05278 80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGN------------------RIDGGQAEYVRVPYADMNLAKIPDGL 141 (347)
T ss_pred CEEEecCCCCCCCChhHhCcCcccCcCCCccccccc------------------CCCCeeeEEEEecchhCeEEECCCCC
Confidence 999999999999999999999999987553221100 012589999999987 999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
+.++++.+++++.+||+++ ...+++++++|||.|+|.+|++++|+|+.+|+.+++++++++++.+.++++|++.+++++
T Consensus 142 ~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 220 (347)
T cd05278 142 PDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPK 220 (347)
T ss_pred CHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCC
Confidence 9999999999999999997 778899999999988899999999999999965788888888999999999999999887
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+.++.+.+++++++ ++|++||++++...+..++++++++ |+++.+|..............+.+++++.+.....
T Consensus 221 --~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 295 (347)
T cd05278 221 --NGDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPV-- 295 (347)
T ss_pred --cchHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCcccCccchhhhceeEEEeeccCc--
Confidence 56688888888876 9999999998755789999999997 99999986543221112222224566766654322
Q ss_pred cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCe-e-eEEEeC
Q 017460 319 PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC-L-RSVIHM 369 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~-~-kvvi~~ 369 (371)
...+.++++++.++.+++.+.+...|+++++.++++.+..++. . |+++++
T Consensus 296 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~ 347 (347)
T cd05278 296 -RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347 (347)
T ss_pred -hhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence 3578889999999988765545688999999999999987776 5 888763
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=314.72 Aligned_cols=310 Identities=17% Similarity=0.179 Sum_probs=240.5
Q ss_pred eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC--------C------eEEEEEeeCCCCCCCC
Q 017460 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP--------Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 14 ~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~--------~------~~G~V~~~G~~v~~~~ 79 (371)
||++++++++ ++++++|.|. +++||+|||.++|||++|+++++|.+. + ++|+|+++|.. .|+
T Consensus 4 ~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~~ 79 (341)
T cd08237 4 QVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TYK 79 (341)
T ss_pred cceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--ccC
Confidence 7888888886 9999999995 999999999999999999999988531 2 69999998764 799
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||||++.+...|+ |..| +..++|.+..+. |.. .+ |+|+||+.++++.++++|+++
T Consensus 80 vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~~--g~~-~~------------------G~~aey~~v~~~~~~~vP~~l 135 (341)
T cd08237 80 VGTKVVMVPNTPVE-KDEI--IPENYLPSSRFR--SSG-YD------------------GFMQDYVFLPPDRLVKLPDNV 135 (341)
T ss_pred CCCEEEECCCCCch-hccc--chhccCCCccee--Eec-CC------------------CceEEEEEEchHHeEECCCCC
Confidence 99999998887787 4455 456778765431 211 22 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhh--hcCCCCCCEEEEEccChHHHHHHHHHHH-cCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 160 PLEKICLLSCGLSAGLGAAWN--VADISKGSTVVIFGLGTVGLSVAQGAKA-RGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~--~~~~~~~~~VlI~Gag~~G~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
++++|+++. +++++++++.. .+.+++|++|||+|+|++|++++|+++. .|..+|++++++++|++.+++++++..+
T Consensus 136 ~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~ 214 (341)
T cd08237 136 DPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI 214 (341)
T ss_pred ChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh
Confidence 999888665 88899998743 3457889999999999999999999986 6655899999999999999887664322
Q ss_pred CCCCCCchHHHHHHHHhCC-CccEEEEcCCC---hHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEec
Q 017460 237 NPNDNNEPVQQVIKRITDG-GADYSFECIGD---TGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGS 312 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~ 312 (371)
+ + +... ++|+|||++|+ ...+..++++++++ |+++.+|.......++.. ..+.+++++.++
T Consensus 215 ~------~-------~~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~-~~~~k~~~i~g~ 279 (341)
T cd08237 215 D------D-------IPEDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVSEYPVPINTR-MVLEKGLTLVGS 279 (341)
T ss_pred h------h-------hhhccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeecCCCcccCHH-HHhhCceEEEEe
Confidence 1 1 1223 79999999994 45789999999997 999999975432222221 123568899887
Q ss_pred ccCCCCcCCCHHHHHHHHHcC---CCCCCcceeeeecch---hHHHHHHHHHcCCeeeEEEeCC
Q 017460 313 LFGGWKPKTDLPSLVNRYLKK---EFMVDEFITHNLLFE---DINQAFNLMKEGKCLRSVIHMP 370 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~---~~~~a~~~~~~~~~~kvvi~~~ 370 (371)
.... ..++.++++++.++ +.++.++|+++|+++ ++.++|+.+.++...|+||++.
T Consensus 280 ~~~~---~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~~ 340 (341)
T cd08237 280 SRST---REDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEWE 340 (341)
T ss_pred cccC---HHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEee
Confidence 6432 34688999999998 335778889999985 6677777665553339999764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=312.08 Aligned_cols=337 Identities=28% Similarity=0.388 Sum_probs=274.7
Q ss_pred eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~~~~G 81 (371)
|||+++.++++ +++.++|.|.+ ++++|+||+.++++|++|+..+.|.++ + ++|+|+++|++++.+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 79 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence 79999988755 99999999998 499999999999999999999988764 1 699999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccc----------cccccCCCccceeccCcccccccCccceeeEEEeeCC-
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLER----------RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG- 150 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~----------~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~- 150 (371)
|+|++.+...|++|++|+.+..++|.+..... .|+.+.. .+ . ....|+|++|++++.+
T Consensus 80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~-~~~~g~~~~~~~v~~~~ 148 (386)
T cd08283 80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYS---HL-------T-GGYAGGQAEYVRVPFAD 148 (386)
T ss_pred CEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccc---cc-------c-CCCCCeeEEEEEccccc
Confidence 99999998899999999999999998755321 1111000 00 0 0012589999999987
Q ss_pred -ceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 151 -CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 151 -~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
.++++|+++++++++.++..+++||+++ +..++.+|++|||+|+|.+|++++++|+++|+.+|+++++++++.+.+++
T Consensus 149 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 149 VGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 8999999999999999998999999998 78899999999999999999999999999998569999999999999999
Q ss_pred cCCceEeCCCCCCc-hHHHHHHHHhCC-CccEEEEcCCCh---------------------HHHHHHHHHhccCCceEEE
Q 017460 230 FGVTEFLNPNDNNE-PVQQVIKRITDG-GADYSFECIGDT---------------------GMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 230 lg~~~vi~~~~~~~-~~~~~v~~~~~g-g~dvVid~~g~~---------------------~~l~~~~~~l~~~~G~~v~ 286 (371)
++...++++. .. ++.+.++.++++ ++|+|||++|+. ..+..++++++++ |+++.
T Consensus 228 ~~~~~vi~~~--~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~ 304 (386)
T cd08283 228 HLGAETINFE--EVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSI 304 (386)
T ss_pred cCCcEEEcCC--cchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccC-CEEEE
Confidence 8444677765 34 488888888887 899999999752 3678899999997 99999
Q ss_pred ecCCCCCCeeecch-heeeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCC-ee-
Q 017460 287 LGVPKLKPEVAAHY-GLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK-CL- 363 (371)
Q Consensus 287 ~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~-~~- 363 (371)
+|..... ...++. ..+.++.++.+..... .+.+..+++++.++++.+.++++++|+++++.+||+.+.++. ..
T Consensus 305 ~g~~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~ 380 (386)
T cd08283 305 IGVYGGT-VNKFPIGAAMNKGLTLRMGQTHV---QRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCI 380 (386)
T ss_pred EcCCCCC-cCccCHHHHHhCCcEEEeccCCc---hHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeE
Confidence 9876442 222222 2234577877764321 356888999999999887666678999999999999988776 34
Q ss_pred eEEEeC
Q 017460 364 RSVIHM 369 (371)
Q Consensus 364 kvvi~~ 369 (371)
|++|++
T Consensus 381 k~~~~~ 386 (386)
T cd08283 381 KVVLKP 386 (386)
T ss_pred EEEecC
Confidence 999863
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=308.63 Aligned_cols=323 Identities=28% Similarity=0.428 Sum_probs=274.9
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC--------C-----eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP--------Q-----CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~--------~-----~~G~V~~~G~~v~~~~ 79 (371)
|||+++.++++++++.+.+.|++++++|+||+.++++|++|+....|.++ . ++|+|+++|++++.++
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 78999998877799999999999999999999999999999998877543 1 5999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|++.+...|+.|..|+.+..++|.+.... |+. .+ |+|++|+.++++.++++|+++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------------g~~~~~~~v~~~~~~~~P~~l 139 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARFP--GIG-TD------------------GGFAEYLLVPSRRLVKLPRGL 139 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCccc--Ccc-CC------------------CcceeeEEecHHHeEECCCCC
Confidence 999999999899999999999999999987752 332 22 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhh-cCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNV-ADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
+.++++.+++.+.|||+++.+. ..+.++++|||+|+|++|++++++|+.+| . +|+++++++++.+.++++|++++++
T Consensus 140 s~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~~ 218 (340)
T cd05284 140 DPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVLN 218 (340)
T ss_pred CHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEEc
Confidence 9999999999999999998655 46888999999999889999999999999 6 8999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCC
Q 017460 238 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGG 316 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 316 (371)
++ .. +.+.+++++++ ++|+++|++|+...+..++++++++ |+++.+|.... ..++... .+.+++++.++....
T Consensus 219 ~~--~~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 292 (340)
T cd05284 219 AS--DD-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH-GRLPTSD-LVPTEISVIGSLWGT 292 (340)
T ss_pred CC--cc-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC-CccCHHH-hhhcceEEEEEeccc
Confidence 86 44 88888888877 8999999999766789999999997 99999986542 2222111 134678887765432
Q ss_pred CCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 317 WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
...+..+++++.++.+.+ . .+.|+++++++|++.+++++.. |+++.+
T Consensus 293 ---~~~~~~~~~~l~~g~l~~--~-~~~~~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 293 ---RAELVEVVALAESGKVKV--E-ITKFPLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred ---HHHHHHHHHHHHhCCCCc--c-eEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence 357888999999998764 2 3689999999999999988877 888754
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=308.23 Aligned_cols=326 Identities=25% Similarity=0.356 Sum_probs=275.6
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----------------C-----eEEEEEe
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----------------Q-----CCRIVES 70 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----------------~-----~~G~V~~ 70 (371)
|||+++..++.++++.+.|.|+++++||+||+.++++|++|++.+.|.++ . ++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 79999988888899999999999999999999999999999998876532 1 6999999
Q ss_pred eCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC
Q 017460 71 VGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 150 (371)
Q Consensus 71 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~ 150 (371)
+|++++.+++||+|++.++..|+.|..|.++.+++|..... .|.. . .|+|++|+.++.+
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~~~~~ 139 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA--LGIF-Q------------------DGGYAEYVIVPHS 139 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc--eeee-c------------------cCcceeeEEecHH
Confidence 99999999999999999999999999999999999977543 1211 1 2489999999999
Q ss_pred ceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 151 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 151 ~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
.++++|++++..+++.+.+.+.+||+++.....+.++++|||+|+|++|++++|+|++.|+++|+++++++++.+.++++
T Consensus 140 ~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~ 219 (350)
T cd08240 140 RYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA 219 (350)
T ss_pred HeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh
Confidence 99999999999999999999999999986666667899999999899999999999999997789999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEE
Q 017460 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLK 310 (371)
Q Consensus 231 g~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~ 310 (371)
|++.+++.+ +..+.+.+.++.++++|++||++|....+..++++++++ |+++.+|........+..... .++.++.
T Consensus 220 g~~~~~~~~--~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~-~~~~~i~ 295 (350)
T cd08240 220 GADVVVNGS--DPDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGGEATLPLPLLP-LRALTIQ 295 (350)
T ss_pred CCcEEecCC--CccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCCCCcccHHHHh-hcCcEEE
Confidence 998888876 556777788776668999999999766889999999997 999999876543233333322 3677887
Q ss_pred ecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 311 GSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 311 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
++.... .+++..+++++.++.++.. ....|+++++.+||+.+.+++.. |+++.
T Consensus 296 ~~~~~~---~~~~~~~~~ll~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 349 (350)
T cd08240 296 GSYVGS---LEELRELVALAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLK 349 (350)
T ss_pred EcccCC---HHHHHHHHHHHHcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence 766543 2468889999999987654 35789999999999999888877 88875
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=305.53 Aligned_cols=327 Identities=25% Similarity=0.397 Sum_probs=275.3
Q ss_pred eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~~~~G 81 (371)
|||+++.+++. +++.+.|.|++ .++||+||++++++|++|+..+.|.++ + ++|+|+++|++++.+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G 79 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG 79 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence 78999998886 99999999996 899999999999999999999988654 1 599999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC--ceEECCCCC
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIA 159 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~~P~~~ 159 (371)
|+|++.+...|+.|++|..+..+.|....+. .|.. . .|+|++|+.++.+ .++++|+++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~------------------~g~~~~~~~v~~~~~~~~~lp~~~ 139 (345)
T cd08286 80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI-LGNL-I------------------DGTQAEYVRIPHADNSLYKLPEGV 139 (345)
T ss_pred CEEEECCcCCCCCChHHHCcCcccCCCcccc-cccc-c------------------CCeeeeEEEcccccCceEECCCCC
Confidence 9999999999999999999999999876542 1211 1 2489999999987 899999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
+..+++.+++.+++||+++....++.++++|||+|+|.+|++++|+|+++|+.+|++++++++|.+.++++|++.+++++
T Consensus 140 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~ 219 (345)
T cd08286 140 DEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSA 219 (345)
T ss_pred CHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccc
Confidence 99999999989999999876778899999999999999999999999999944899998999999999999999999886
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGGW 317 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~ 317 (371)
..++...+.+++.+ ++|++||++++...+..+++.++++ |+++.+|..... ..+.... +.+++++.+....
T Consensus 220 --~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~-- 292 (345)
T cd08286 220 --KGDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGKP--VDLHLEKLWIKNITITTGLVD-- 292 (345)
T ss_pred --cccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccCCC--CCcCHHHHhhcCcEEEeecCc--
Confidence 45677788888777 8999999998766788999999997 999999865432 2233332 3467888764322
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCC---eeeEEEeC
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK---CLRSVIHM 369 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~---~~kvvi~~ 369 (371)
...+.++++++.++.+++.++++++|+++++.++++.+.+.. ..|++|++
T Consensus 293 --~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 293 --TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred --hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 235788889999998877666679999999999999998763 44999864
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=305.00 Aligned_cols=328 Identities=26% Similarity=0.391 Sum_probs=277.6
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++++++.++++.+.|.|.+.+++|+||+.++++|++|+..+.|..+ + ++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd 80 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD 80 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence 79999998887899999999999999999999999999999998887654 1 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC--ceEECCCCCC
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAP 160 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~~P~~~~ 160 (371)
+|+..++..|++|++|..+..++|..... .|+. .+ |+|++|+.++++ .++++|++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~~iP~~~~ 139 (345)
T cd08260 81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ--PGFT-HP------------------GSFAEYVAVPRADVNLVRLPDDVD 139 (345)
T ss_pred EEEECCCCCCCCCccccCcCcccCCCCcc--cccC-CC------------------CcceeEEEcccccCceEECCCCCC
Confidence 99997888999999999999999998542 2221 12 489999999975 9999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
.++++.++.++.+|++++.+.+++.++++|+|+|+|.+|++++++|++.|+ +|+++++++++++.++++|++.+++++
T Consensus 140 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~- 217 (345)
T cd08260 140 FVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNAS- 217 (345)
T ss_pred HHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEccc-
Confidence 999999998999999998777889999999999999999999999999999 899999999999999999999999886
Q ss_pred CC-chHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCe-eecchhee-eeccEEEecccCCC
Q 017460 241 NN-EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE-VAAHYGLF-LSGRTLKGSLFGGW 317 (371)
Q Consensus 241 ~~-~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~-~~~~~i~g~~~~~~ 317 (371)
. .++.+.+.++..+++|++||++|+...+...+++++++ |+++.+|....... ..++...+ .++.++.+.....
T Consensus 218 -~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 294 (345)
T cd08260 218 -EVEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMP- 294 (345)
T ss_pred -cchhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCC-
Confidence 4 57777788776668999999998756788999999997 99999987543221 22222222 4577777765422
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
...+..+++++.++++.+.+++++.++++++.+|++.+..++.. |+|++
T Consensus 295 --~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 295 --AHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred --HHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 35788899999999887665567899999999999999988777 77764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=307.02 Aligned_cols=349 Identities=34% Similarity=0.522 Sum_probs=278.9
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCC---CCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTE---FNE 80 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~---~~~ 80 (371)
|||+++.+++.++++.+.|.|.++++||+||+.++++|++|+..+.|.++. ++|+|+.+|++++. +++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~~~~~~~~~~ 80 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPFPPPFVLGHEISGEVVEVGPNVENPYGLSV 80 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCCCCCcccccccceEEEEeCCCCCCCCcCCC
Confidence 789999998777999999999999999999999999999999988875531 69999999999988 999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCccccccccc--ccccCCCccc-eeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR--GVMHSDQQTR-FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~--g~~~~~g~~~-~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
||+|++.+..+|+.|.+|..+.+++|.......+ |.. ..|... +...+...+ ....|+|++|+.++.+.++++|+
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P~ 158 (367)
T cd08263 81 GDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTL-YDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLPE 158 (367)
T ss_pred CCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccc-cCCcccccccCCCccc-cccCCcceeEEEechhhEEECCC
Confidence 9999998889999999999999999997541100 000 000000 000000000 01135899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
+++..+++.+++++.+||+++...+.+.++++|||+|+|.+|++++++|+++|+.+++++++++++.+.++++|++.+++
T Consensus 159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~ 238 (367)
T cd08263 159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVN 238 (367)
T ss_pred CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEec
Confidence 99999999999999999999877778899999999988999999999999999944999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccC
Q 017460 238 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFG 315 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~ 315 (371)
++ ..++.+++++.+++ ++|+|||++++...+..++++++++ |+++.++.........+....+ .++.++.++...
T Consensus 239 ~~--~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
T cd08263 239 AA--KEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGA 315 (367)
T ss_pred CC--cccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCccccCHHHHhhCCeEEEecCCC
Confidence 87 56788888888776 9999999999854788999999997 9999998654322222332222 357777764322
Q ss_pred CCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 316 GWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
. .++.+.++++++.++.+.+.+++++.|+++++.++++.+++++.. |+||+
T Consensus 316 ~--~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 316 R--PRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred C--cHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 1 134688889999999987765567899999999999999988877 88874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=309.28 Aligned_cols=332 Identities=19% Similarity=0.230 Sum_probs=270.8
Q ss_pred ccceeeeEEEEe--cCCC---CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC--------------CC----C-
Q 017460 8 PQVITCKAAVAW--GAGQ---PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--------------WP----Q- 63 (371)
Q Consensus 8 ~~~~~~~a~~~~--~~~~---~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~--------------~~----~- 63 (371)
.-|.+|+|+++. +++. .+++.++|.|.++++||+||+.+++||++|++.+.|. .+ .
T Consensus 8 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~ 87 (393)
T cd08246 8 VVPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGS 87 (393)
T ss_pred cCchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCcccccc
Confidence 457889999985 3332 3788999999999999999999999999998877653 11 1
Q ss_pred -eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCcccee
Q 017460 64 -CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFS 142 (371)
Q Consensus 64 -~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a 142 (371)
++|+|+++|++++.+++||+|++.+...|+.|..|..+.+++|....+ .|+. . ..|+|+
T Consensus 88 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~--~g~~-~-----------------~~g~~a 147 (393)
T cd08246 88 DASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI--WGYE-T-----------------NYGSFA 147 (393)
T ss_pred ceEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc--cccc-C-----------------CCCcce
Confidence 699999999999999999999999999999999999999999976443 3332 1 125899
Q ss_pred eEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhh--cCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC
Q 017460 143 EYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV--ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT 219 (371)
Q Consensus 143 ~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~--~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~ 219 (371)
+|+++++..++++|+++++++++.+++++.+||+++... ++++++++|||+|+ |++|++++++|+++|+ +++++++
T Consensus 148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~ 226 (393)
T cd08246 148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS 226 (393)
T ss_pred eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999999999999999999999999997544 67899999999996 9999999999999999 8888889
Q ss_pred ChhhHHHHHHcCCceEeCCCCC--------------------CchHHHHHHHHhCC--CccEEEEcCCChHHHHHHHHHh
Q 017460 220 NPEKCEKAKAFGVTEFLNPNDN--------------------NEPVQQVIKRITDG--GADYSFECIGDTGMITTALQSC 277 (371)
Q Consensus 220 ~~~~~~~~~~lg~~~vi~~~~~--------------------~~~~~~~v~~~~~g--g~dvVid~~g~~~~l~~~~~~l 277 (371)
++++++.++++|+++++++++. ...+.+.+.+++++ ++|++||++|+ ..+..+++++
T Consensus 227 s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l 305 (393)
T cd08246 227 SEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVC 305 (393)
T ss_pred CHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHh
Confidence 9999999999999998886421 11356778888876 79999999997 5789999999
Q ss_pred ccCCceEEEecCCCCC-CeeecchheeeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHH
Q 017460 278 CDGWGLAVTLGVPKLK-PEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNL 356 (371)
Q Consensus 278 ~~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~ 356 (371)
+++ |+++.+|..... ..++.... +.++.++.+++... .+.+.++++++.++.+.+ .++++|+++++++|++.
T Consensus 306 ~~~-G~~v~~g~~~~~~~~~~~~~l-~~~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~ 378 (393)
T cd08246 306 DRG-GMVVICAGTTGYNHTYDNRYL-WMRQKRIQGSHFAN---DREAAEANRLVMKGRIDP--CLSKVFSLDETPDAHQL 378 (393)
T ss_pred ccC-CEEEEEcccCCCCCCCcHHHH-hhheeEEEecccCc---HHHHHHHHHHHHcCCcee--eeeEEEeHHHHHHHHHH
Confidence 997 999999865432 12222222 24577787776543 246888999999998764 35789999999999999
Q ss_pred HHcC-Cee-eEEEe
Q 017460 357 MKEG-KCL-RSVIH 368 (371)
Q Consensus 357 ~~~~-~~~-kvvi~ 368 (371)
+.++ ... |+++-
T Consensus 379 ~~~~~~~~gkvvv~ 392 (393)
T cd08246 379 MHRNQHHVGNMAVL 392 (393)
T ss_pred HHhCccccceEEEe
Confidence 9888 666 87763
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=301.74 Aligned_cols=293 Identities=21% Similarity=0.268 Sum_probs=230.3
Q ss_pred eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCC-cchhhhhcCCCC-------C------eEEEEEeeCCCCCC
Q 017460 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLC-RSDITAWETQWP-------Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 12 ~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~-~~D~~~~~g~~~-------~------~~G~V~~~G~~v~~ 77 (371)
+|||+++.+++. +++.+.|.|+|+++||+|||.+++|| ++|++.+.|.++ + ++|+|+++|+++ .
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 589999988775 99999999999999999999999996 799988887531 1 699999999998 6
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
|++||||+.. |..|.+|.. | . .|+|+||+.++++.++++|+
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~--------------~---~------------------~G~~aey~~v~~~~~~~ip~ 119 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVR--------------G---L------------------FGGASKRLVTPASRVCRLDP 119 (308)
T ss_pred CCCCCEEEEe----Ccccccccc--------------c---c------------------CCcccceEEcCHHHceeCCC
Confidence 9999999874 223322210 0 1 14899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
+++.+. ++++ .+.+||+++. .. ..++++|||+|+|++|++++|+|+++|++.|++++.+++|++.++++ .++|
T Consensus 120 ~~~~~~-a~~~-~~~~a~~~~~-~~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~ 192 (308)
T TIGR01202 120 ALGPQG-ALLA-LAATARHAVA-GA-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLD 192 (308)
T ss_pred CCCHHH-Hhhh-HHHHHHHHHH-hc-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccC
Confidence 999864 5554 5789999874 33 34688999999999999999999999996677787888887776654 3455
Q ss_pred CCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCC
Q 017460 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGW 317 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 317 (371)
+. . . .+.++|+||||+|+...++.++++++++ |+++.+|.......+++... +.+++++.++....
T Consensus 193 ~~--~-~--------~~~g~Dvvid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~-~~~~~~i~~~~~~~- 258 (308)
T TIGR01202 193 PE--K-D--------PRRDYRAIYDASGDPSLIDTLVRRLAKG-GEIVLAGFYTEPVNFDFVPA-FMKEARLRIAAEWQ- 258 (308)
T ss_pred hh--h-c--------cCCCCCEEEECCCCHHHHHHHHHhhhcC-cEEEEEeecCCCcccccchh-hhcceEEEEecccc-
Confidence 43 1 1 1238999999999876789999999997 99999997644223333222 24678888765432
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
..++.++++++.++++++.++++++|+|+++++||+.+.++... |++|+
T Consensus 259 --~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 259 --PGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred --hhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence 35799999999999999888899999999999999988766554 99874
|
|
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=300.55 Aligned_cols=330 Identities=27% Similarity=0.408 Sum_probs=269.0
Q ss_pred eeEEEEecCCCCeEEEEeecCCCC-CCcEEEEEeeecCCcchhhhhcCCCC---C------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQ-PEEIRIKVVCTSLCRSDITAWETQWP---Q------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~-~~evlV~v~~~~i~~~D~~~~~g~~~---~------~~G~V~~~G~~v~~~~~Gd 82 (371)
|+|+++..+. .+++++++.|++. ++||+||+.++++|+.|+..+.|.++ + ++|+|+++|++++.+++||
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (344)
T cd08284 1 MKAVVFKGPG-DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTPGFVLGHEFVGEVVEVGPEVRTLKVGD 79 (344)
T ss_pred CeeEEEecCC-CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCCCCCcccccceEEEEEeeCCCccccCCCC
Confidence 6899998775 5999999999985 99999999999999999998887653 1 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC--ceEECCCCCC
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAP 160 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~~P~~~~ 160 (371)
+|++.+..+|+.|.+|.++..++|.+.... |..+.. ...|+|++|+.++++ .++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~g~~~~~~~v~~~~~~~~~~p~~l~ 142 (344)
T cd08284 80 RVVSPFTIACGECFYCRRGQSGRCAKGGLF--GYAGSP---------------NLDGAQAEYVRVPFADGTLLKLPDGLS 142 (344)
T ss_pred EEEEcccCCCCCChHHhCcCcccCCCCccc--cccccC---------------CCCCceeEEEEcccccCceEECCCCCC
Confidence 999999899999999999999999865431 110000 013589999999865 9999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
+++++.+++.+.+||+++ ...++.++++|||+|+|.+|++++++|+.+|+.+|+++++++++.+.++++|+. .++.+
T Consensus 143 ~~~a~~l~~~~~ta~~~~-~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~- 219 (344)
T cd08284 143 DEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFE- 219 (344)
T ss_pred HHHhhhhcCchHHHHhhh-HhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecC-
Confidence 999999999999999998 457889999999999899999999999999975799998889999999999985 45554
Q ss_pred CCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCc
Q 017460 241 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 241 ~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 319 (371)
..++...+.+++++ ++|++||++++...+..++++++++ |+++.+|..............+.++.++..... ..
T Consensus 220 -~~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 294 (344)
T cd08284 220 -DAEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRC---PV 294 (344)
T ss_pred -CcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCCCCccccHHHHhhcCcEEEEecC---Cc
Confidence 45688888888877 9999999999766889999999997 999999876532111111222345677654321 12
Q ss_pred CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEe
Q 017460 320 KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIH 368 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~ 368 (371)
...+..+++++.++.+.+.++++++|+++++.++++.+.++...|+|++
T Consensus 295 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~ 343 (344)
T cd08284 295 RSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD 343 (344)
T ss_pred chhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence 4678899999999988765556789999999999998887655687774
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=301.02 Aligned_cols=330 Identities=25% Similarity=0.386 Sum_probs=262.8
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC--------CCC-----eEEEEEeeCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--------WPQ-----CCRIVESVGPGVT 76 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~--------~~~-----~~G~V~~~G~~v~ 76 (371)
..+|+++++..+.. +++.+.+.|.+.++||+||+.++++|++|++.+.|. .+. ++|+|+++|++++
T Consensus 15 ~~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 93 (364)
T PLN02702 15 EEENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVK 93 (364)
T ss_pred ccccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCC
Confidence 45566666666654 899999999999999999999999999999888652 121 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
.|++||+|++.+..+|+.|..|.++..+.|.+..+. +.. . ..|+|++|++++...++++|
T Consensus 94 ~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~-~-----------------~~g~~~~y~~v~~~~~~~~P 153 (364)
T PLN02702 94 HLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFF--ATP-P-----------------VHGSLANQVVHPADLCFKLP 153 (364)
T ss_pred CCCCCCEEEEcCCCCCCCCcchhCcCcccCCCcccc--CCC-C-----------------CCCcccceEEcchHHeEECC
Confidence 999999999999999999999999999999863321 100 0 12489999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
++++++++++.. ++.++++++ +..++.++++|||+|+|++|++++++|++.|+..+++++++++|.+.++++|++.++
T Consensus 154 ~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 154 ENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIV 231 (364)
T ss_pred CCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence 999999988632 555688876 778899999999999999999999999999996688888899999999999998877
Q ss_pred CCCCCCchHHHHHHHH---hCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecc
Q 017460 237 NPNDNNEPVQQVIKRI---TDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSL 313 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~---~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~ 313 (371)
++.....++.+.+.++ +++++|+|||++|+...+..++++++++ |+++.+|.......+.. .....+++++.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~ 309 (364)
T PLN02702 232 LVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHNEMTVPL-TPAAAREVDVVGVF 309 (364)
T ss_pred ecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCcccH-HHHHhCccEEEEec
Confidence 6532235666666655 2338999999999767899999999997 99999986533211111 12234578888765
Q ss_pred cCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecc--hhHHHHHHHHHcCCee-eEEEe
Q 017460 314 FGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLF--EDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
.. ...+..+++++.++.+.+.++++++|++ +++.+|++.+.+++.. |++|.
T Consensus 310 ~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~ 363 (364)
T PLN02702 310 RY----RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN 363 (364)
T ss_pred cC----hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence 32 2467888999999988766667788665 7999999999887766 98885
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=296.87 Aligned_cols=324 Identities=30% Similarity=0.475 Sum_probs=269.2
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++++++. +++.+++.|.++++||+|+|.++++|+.|+..+.|..+ + ++|+|+++|++++.|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD 79 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence 78999988875 99999999999999999999999999999998877543 1 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
+|+..++.+|+.|..|+.++++.|..... .++. . .|+|++|+.++++ ++++|++++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~v~v~~~-~~~~p~~~~~~ 137 (337)
T cd08261 80 RVVVDPYISCGECYACRKGRPNCCENLQV--LGVH-R------------------DGGFAEYIVVPAD-ALLVPEGLSLD 137 (337)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCe--eeec-C------------------CCcceeEEEechh-eEECCCCCCHH
Confidence 99998888999999999999999954322 1111 1 2489999999999 99999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
+++++ ..+.++++++ +..++.++++|||+|+|.+|++++|+|+.+|+ +|+++++++++.+.++++|++++++++ .
T Consensus 138 ~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~--~ 212 (337)
T cd08261 138 QAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVG--D 212 (337)
T ss_pred Hhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCc--c
Confidence 99877 4778888887 78899999999999889999999999999999 899999999999999999999999887 5
Q ss_pred chHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCC
Q 017460 243 EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 243 ~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 321 (371)
.++.+.+.+++++ ++|++||++|+...+..++++++++ |+++.+|.......++.. ....++.++.+... ...+
T Consensus 213 ~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~ 287 (337)
T cd08261 213 EDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKGPVTFPDP-EFHKKELTILGSRN---ATRE 287 (337)
T ss_pred cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCCCCCccCHH-HHHhCCCEEEEecc---CChh
Confidence 5788888888877 8999999998766789999999997 999999865432222221 11124666666532 2235
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCC-ee-eEEEeC
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK-CL-RSVIHM 369 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~-~~-kvvi~~ 369 (371)
.+..+++++.++.+++.+.+..+|+++++.++++.+.+++ .. |+|+++
T Consensus 288 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 288 DFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred hHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 7888999999999876434568999999999999998873 55 988864
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=297.09 Aligned_cols=327 Identities=24% Similarity=0.343 Sum_probs=265.4
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC--------CCC-----eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--------WPQ-----CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~--------~~~-----~~G~V~~~G~~v~~~~ 79 (371)
||+++++++++.+++.+.|.|.+.++||+||++++++|++|+.++.+. .+. ++|+|+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 689999998878999999999999999999999999999999865431 111 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|++.+..+|+.|+.|..+++++|.+... .|.. . .|+|++|+.++.+.++++|+++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~v~~~~~~~iP~~l 139 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG--VGVN-R------------------PGAFAEYLVIPAFNVWKIPDDI 139 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcce--eeec-C------------------CCcceeeEEechHHeEECcCCC
Confidence 99999999999999999999999999976432 2221 1 2589999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++++.+ .++.++++++.. ...+|++|+|+|+|++|++++++|+++|+++|+++++++++.+.++++|++.+++++
T Consensus 140 ~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~ 216 (341)
T PRK05396 140 PDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVA 216 (341)
T ss_pred CHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCc
Confidence 99888865 466777666532 346899999998899999999999999996688888899999999999999999886
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
..++.+.+++++++ ++|+||||+|+...+..++++++++ |+++.+|.......+++ ...++++.++.++.....
T Consensus 217 --~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~- 291 (341)
T PRK05396 217 --KEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPGDMAIDW-NKVIFKGLTIKGIYGREM- 291 (341)
T ss_pred --cccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCCcccH-HHHhhcceEEEEEEccCc-
Confidence 56788888888877 9999999999877889999999997 99999986543233332 233345777777542221
Q ss_pred cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeCC
Q 017460 319 PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMP 370 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~~ 370 (371)
...+..+++++.++ +.+.+.+.++|+++++.+|++.+.++...|++++++
T Consensus 292 -~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~~ 341 (341)
T PRK05396 292 -FETWYKMSALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDWD 341 (341)
T ss_pred -cchHHHHHHHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEecC
Confidence 23456778888888 445555678999999999999998877339998764
|
|
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=297.85 Aligned_cols=326 Identities=29% Similarity=0.436 Sum_probs=268.7
Q ss_pred eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcCCCC---C------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQWP---Q------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~~~---~------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++.++++ +++.+.|.|.+ +++||+||+.++++|++|++.+.|.++ + ++|+|+++|+++..+++||
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPTRAPAPIGHEFVGVVEEVGSEVTSVKPGD 79 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCCCCCcccccceEEEEEEeCCCCCccCCCC
Confidence 78999988776 99999999996 899999999999999999988887654 1 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC--ceEECCCCCC
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIAP 160 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~~P~~~~ 160 (371)
+|++.+..+|+.|.+|..+..+.|.+..+. |.. .+ |+|++|+.++.+ .++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------------g~~~~~~~v~~~~~~~~~lP~~l~ 138 (345)
T cd08287 80 FVIAPFAISDGTCPFCRAGFTTSCVHGGFW--GAF-VD------------------GGQGEYVRVPLADGTLVKVPGSPS 138 (345)
T ss_pred EEEeccccCCCCChhhhCcCcccCCCCCcc--cCC-CC------------------CceEEEEEcchhhCceEECCCCCC
Confidence 999866778999999999999999875431 111 12 489999999975 9999999998
Q ss_pred hhhhh-----hcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 161 LEKIC-----LLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 161 ~~~aa-----~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
++.+. ++...+.+|++++ +.+++++|++|+|.|+|.+|++++++|++.|++.++++++++++.+.++++|++.+
T Consensus 139 ~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v 217 (345)
T cd08287 139 DDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDI 217 (345)
T ss_pred hhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceE
Confidence 72221 2224688899987 57889999999999899999999999999999668899888889999999999999
Q ss_pred eCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-heeeeccEEEecc
Q 017460 236 LNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-GLFLSGRTLKGSL 313 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~ 313 (371)
++++ ...+.+.+.+++++ ++|+++|++|+...+..++++++++ |+++.+|..... ..++. ..+.++.++.+..
T Consensus 218 ~~~~--~~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~ 292 (345)
T cd08287 218 VAER--GEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHGG--VELDVRELFFRNVGLAGGP 292 (345)
T ss_pred ecCC--cccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccCCC--CccCHHHHHhcceEEEEec
Confidence 9887 56788888888877 9999999998777899999999997 999999865432 22232 2345688887643
Q ss_pred cCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 314 FGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
... ...+.++++++.++.+++.++++++|+++++.+|++.+.+....|++|++
T Consensus 293 ~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~~ 345 (345)
T cd08287 293 APV---RRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLRP 345 (345)
T ss_pred CCc---HHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeCC
Confidence 221 34688899999999987765567899999999999998887766999863
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=302.73 Aligned_cols=333 Identities=20% Similarity=0.264 Sum_probs=270.5
Q ss_pred cceeeeEEEEec--CCC---CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC---------------C--C---
Q 017460 9 QVITCKAAVAWG--AGQ---PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW---------------P--Q--- 63 (371)
Q Consensus 9 ~~~~~~a~~~~~--~~~---~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~---------------~--~--- 63 (371)
.+.+|||+++.. ++. .+++.+.|.|.+.+++|+||++++++|++|++...+.. + .
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 467899999954 453 38999999999999999999999999998876654421 1 1
Q ss_pred -eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCcccee
Q 017460 64 -CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFS 142 (371)
Q Consensus 64 -~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a 142 (371)
++|+|+++|++++.+++||+|++.....|++|++|+.+++++|....+ .|.. . ..|+|+
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~-----------------~~g~~a 143 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI--WGYE-T-----------------NFGSFA 143 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc--cccc-C-----------------CCccce
Confidence 699999999999999999999999999999999999999999975432 2211 0 125899
Q ss_pred eEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhh--hcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC
Q 017460 143 EYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN--VADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT 219 (371)
Q Consensus 143 ~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~--~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~ 219 (371)
||+.++++.++++|+++++++++.+.+.+.+||+++.. ..++.++++|||+|+ |.+|++++++|+++|+ +++++++
T Consensus 144 e~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~ 222 (398)
T TIGR01751 144 EFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVS 222 (398)
T ss_pred EEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcC
Confidence 99999999999999999999999999999999999754 477899999999996 9999999999999999 8888889
Q ss_pred ChhhHHHHHHcCCceEeCCCCCC--------------------chHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhc
Q 017460 220 NPEKCEKAKAFGVTEFLNPNDNN--------------------EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCC 278 (371)
Q Consensus 220 ~~~~~~~~~~lg~~~vi~~~~~~--------------------~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~ 278 (371)
++++++.++++|++.++|++.++ ..+.+.+.+++++ ++|++|||+|. ..+..++++++
T Consensus 223 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~l~ 301 (398)
T TIGR01751 223 SPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFVCR 301 (398)
T ss_pred CHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHhhc
Confidence 99999999999999999875210 1355677788877 89999999996 57889999999
Q ss_pred cCCceEEEecCCCCC-CeeecchheeeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHH
Q 017460 279 DGWGLAVTLGVPKLK-PEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLM 357 (371)
Q Consensus 279 ~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~ 357 (371)
++ |+++.+|..... ..++.... +.++.++.++.+..+ .++.++++++.++++... ++++|++++++++|+.+
T Consensus 302 ~~-G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~--~~~~~~l~~~~~a~~~~ 374 (398)
T TIGR01751 302 RG-GMVVICGGTTGYNHDYDNRYL-WMRQKRIQGSHFANL---REAWEANRLVAKGRIDPT--LSKVYPLEEIGQAHQDV 374 (398)
T ss_pred cC-CEEEEEccccCCCCCcCHHHH-hhcccEEEccccCcH---HHHHHHHHHHHCCCcccc--eeeEEcHHHHHHHHHHH
Confidence 97 999999876432 12222221 235667777655432 357788999999887643 67899999999999999
Q ss_pred HcCCee-eEEEeCC
Q 017460 358 KEGKCL-RSVIHMP 370 (371)
Q Consensus 358 ~~~~~~-kvvi~~~ 370 (371)
.+++.. |+++.+.
T Consensus 375 ~~~~~~gkvvv~~~ 388 (398)
T TIGR01751 375 HRNHHQGNVAVLVL 388 (398)
T ss_pred HcCCCCceEEEEeC
Confidence 888877 9888753
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=296.33 Aligned_cols=299 Identities=18% Similarity=0.228 Sum_probs=242.9
Q ss_pred eeEEEEecCCC-----CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------C-----eEEEEEeeCCCCC
Q 017460 13 CKAAVAWGAGQ-----PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------Q-----CCRIVESVGPGVT 76 (371)
Q Consensus 13 ~~a~~~~~~~~-----~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------~-----~~G~V~~~G~~v~ 76 (371)
|||+++++++. .+++.++|.|.++++||+||+.++++|++|++.+.|.++ . ++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 78999998875 378889999999999999999999999999998887542 1 6999999999999
Q ss_pred C-CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEEC
Q 017460 77 E-FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV 155 (371)
Q Consensus 77 ~-~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~ 155 (371)
+ |++||+|++.+ .. .|+|+||+.++++.++++
T Consensus 81 ~~~~vGd~V~~~~------------------------------~~-----------------~g~~a~~~~v~~~~~~~i 113 (324)
T cd08291 81 AQSLIGKRVAFLA------------------------------GS-----------------YGTYAEYAVADAQQCLPL 113 (324)
T ss_pred ccCCCCCEEEecC------------------------------CC-----------------CCcchheeeecHHHeEEC
Confidence 6 99999999752 00 138999999999999999
Q ss_pred CCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE--ccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc
Q 017460 156 SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF--GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233 (371)
Q Consensus 156 P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~--Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~ 233 (371)
|+++++++++.+++.+.|||.++ +.... +++.++|+ |+|++|++++|+|+++|+ +|+++++++++++.++++|++
T Consensus 114 P~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~ 190 (324)
T cd08291 114 PDGVSFEQGASSFVNPLTALGML-ETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAE 190 (324)
T ss_pred CCCCCHHHHhhhcccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence 99999999998888888997544 55555 56666665 469999999999999999 899999999999999999999
Q ss_pred eEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-heeeeccEEEe
Q 017460 234 EFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-GLFLSGRTLKG 311 (371)
Q Consensus 234 ~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g 311 (371)
++++++ ..++.+.+++++++ ++|++||++|+. .....+.+++++ |+++.+|.........++. ..+.+++++.+
T Consensus 191 ~~i~~~--~~~~~~~v~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~ 266 (324)
T cd08291 191 YVLNSS--DPDFLEDLKELIAKLNATIFFDAVGGG-LTGQILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIEG 266 (324)
T ss_pred EEEECC--CccHHHHHHHHhCCCCCcEEEECCCcH-HHHHHHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEEE
Confidence 999886 56788899998887 999999999985 567789999997 9999998654322111212 22356888888
Q ss_pred cccCCCCc---CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 312 SLFGGWKP---KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 312 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
+....+.. .+.+.++++++. ++ ++++++++|+|+++.+||+.+.+++.. |++|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~ 324 (324)
T cd08291 267 FWLTTWLQKLGPEVVKKLKKLVK-TE--LKTTFASRYPLALTLEAIAFYSKNMSTGKKLLI 324 (324)
T ss_pred EEHHHhhcccCHHHHHHHHHHHh-Cc--cccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence 87654422 134666777776 55 455688999999999999999888776 98873
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=295.86 Aligned_cols=319 Identities=25% Similarity=0.382 Sum_probs=266.5
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||++++++++++++++.|.|++.++|++||++++++|++|+....|.++. ++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD 80 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence 789999999988999999999999999999999999999999888775431 6999999999998899999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
+|++.++.+|+.|.+|..++++.|..... .|.. .. |+|++|+.++.+.++++|++++..
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~~ 139 (334)
T PRK13771 81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG--YGEE-LD------------------GFFAEYAKVKVTSLVKVPPNVSDE 139 (334)
T ss_pred EEEECCCCCCcCChhhcCCCcccCccccc--cccc-cC------------------ceeeeeeecchhceEECCCCCCHH
Confidence 99999889999999999999999987543 2211 12 489999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
+++.+++.+.+|++++.+. +++++++|+|+|+ |.+|++++++|++.|+ +++++++++++++.++++ ++.+++.+
T Consensus 140 ~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~-- 214 (334)
T PRK13771 140 GAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS-- 214 (334)
T ss_pred HhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch--
Confidence 9999999999999998554 8899999999987 9999999999999999 899999999999999888 76666652
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCe--eecchheeeeccEEEecccCCCCc
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE--VAAHYGLFLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~--~~~~~~~~~~~~~i~g~~~~~~~~ 319 (371)
.+.+.++++ +++|++||++|+. .+..++++++++ |+++.+|....... ..+... +.+++++.+.... .
T Consensus 215 --~~~~~v~~~--~~~d~~ld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~ 284 (334)
T PRK13771 215 --KFSEEVKKI--GGADIVIETVGTP-TLEESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYI-ILKDIEIIGHISA---T 284 (334)
T ss_pred --hHHHHHHhc--CCCcEEEEcCChH-HHHHHHHHHhcC-CEEEEEeccCCCCCcccCHHHH-HhcccEEEEecCC---C
Confidence 455666664 3799999999974 688999999997 99999987543222 222222 3457788776422 2
Q ss_pred CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 320 KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
++++.++++++.++.++. .++++|+++++.+||+.+.++... |+++.+
T Consensus 285 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 285 KRDVEEALKLVAEGKIKP--VIGAEVSLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred HHHHHHHHHHHHcCCCcc--eEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence 456888999999998753 366899999999999999887766 888865
|
|
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=293.12 Aligned_cols=325 Identities=27% Similarity=0.391 Sum_probs=265.9
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C-----eEEEEEeeCCCCCCCCCCCE
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q-----CCRIVESVGPGVTEFNEGEH 83 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~-----~~G~V~~~G~~v~~~~~Gd~ 83 (371)
|||+++++++...++++.|.|.+.++||+|||.++++|++|++.+.|..+ . ++|+|+++|++++.|++||+
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~ 80 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTGRILGHEGIGIVKEVGPGVTSLKVGDR 80 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCCCCCccCCcccceEEEEECCCCccCCCCCE
Confidence 79999999887544899999999999999999999999999988877542 1 69999999999999999999
Q ss_pred EEeee-cCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 84 VLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 84 V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
|++.+ ..+|+.|.+|..+..++|.+... .|+. .+ |+|++|+.++.+.++++|+++++.
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~~~ 139 (338)
T PRK09422 81 VSIAWFFEGCGHCEYCTTGRETLCRSVKN--AGYT-VD------------------GGMAEQCIVTADYAVKVPEGLDPA 139 (338)
T ss_pred EEEccCCCCCCCChhhcCCCcccCCCccc--cCcc-cc------------------CcceeEEEEchHHeEeCCCCCCHH
Confidence 99765 57899999999999999987542 2332 22 489999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
+++.++.++.|||+++ ..+++++|++|||+|+|++|++++++|+++ |+ +|+++++++++++.++++|++.+++++.
T Consensus 140 ~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~- 216 (338)
T PRK09422 140 QASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKR- 216 (338)
T ss_pred HeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEecccc-
Confidence 9999999999999997 778899999999999999999999999985 99 8999999999999999999998888752
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 321 (371)
..++.+.+++.++ ++|+++.+.++...+..++++++.+ |+++.+|.......++... ...++.++.++.... .+
T Consensus 217 ~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~ 290 (338)
T PRK09422 217 VEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPPESMDLSIPR-LVLDGIEVVGSLVGT---RQ 290 (338)
T ss_pred cccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCCCCceecHHH-HhhcCcEEEEecCCC---HH
Confidence 2456777777765 7885555555556899999999997 9999998653322222211 223466776654322 34
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
.+..+++++.++++.. .+ +.++++++.+||+.+.++... |+++.+.
T Consensus 291 ~~~~~~~l~~~g~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gkvvv~~~ 337 (338)
T PRK09422 291 DLEEAFQFGAEGKVVP--KV-QLRPLEDINDIFDEMEQGKIQGRMVIDFT 337 (338)
T ss_pred HHHHHHHHHHhCCCCc--cE-EEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence 6788899999998653 34 468999999999999988877 9988654
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=290.87 Aligned_cols=311 Identities=24% Similarity=0.317 Sum_probs=255.5
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-------eEEEEEeeCCCCCCCCCCCEEE
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-------CCRIVESVGPGVTEFNEGEHVL 85 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-------~~G~V~~~G~~v~~~~~Gd~V~ 85 (371)
|||+++.+++ ++++.+.|.|+++++||+||+.++++|++|+....|.++. ++|+|+++|++ +++||+|.
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~~~~~~G~e~~G~Vv~~G~~---~~~G~~V~ 76 (319)
T cd08242 1 MKALVLDGGL-DLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYPFPGVPGHEFVGIVEEGPEA---ELVGKRVV 76 (319)
T ss_pred CeeEEEeCCC-cEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCCCCCccCceEEEEEEEeCCC---CCCCCeEE
Confidence 6899998876 4999999999999999999999999999999998886531 69999999998 67999999
Q ss_pred eeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhh
Q 017460 86 TVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIC 165 (371)
Q Consensus 86 ~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa 165 (371)
..+...|+.|.+|+.+.++.|...... ++... .|+|++|++++.+.++++|++++.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------~g~~~~~~~v~~~~~~~lP~~~~~~~aa 136 (319)
T cd08242 77 GEINIACGRCEYCRRGLYTHCPNRTVL--GIVDR------------------DGAFAEYLTLPLENLHVVPDLVPDEQAV 136 (319)
T ss_pred ECCCcCCCCChhhhCcCcccCCCCccc--CccCC------------------CCceEEEEEechHHeEECcCCCCHHHhh
Confidence 999999999999999999988875431 11001 2489999999999999999999999888
Q ss_pred hcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchH
Q 017460 166 LLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPV 245 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~ 245 (371)
.+ .++.+++.++ +..+++++++|||+|+|.+|++++|+|+.+|+ +|++++.++++++.++++|++.+++++ ..
T Consensus 137 ~~-~~~~~~~~~~-~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~--~~-- 209 (319)
T cd08242 137 FA-EPLAAALEIL-EQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDE--AE-- 209 (319)
T ss_pred hh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCcc--cc--
Confidence 65 3556666654 77889999999999999999999999999999 799999999999999999998877764 11
Q ss_pred HHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCCCHH
Q 017460 246 QQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLP 324 (371)
Q Consensus 246 ~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 324 (371)
+.+ ++|++||++|+...+..++++++++ |+++..+.......+++.. .+.++.++.+.... .+.
T Consensus 210 -------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~------~~~ 274 (319)
T cd08242 210 -------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYAGPASFDLTK-AVVNEITLVGSRCG------PFA 274 (319)
T ss_pred -------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCCCCccCHHH-heecceEEEEEecc------cHH
Confidence 334 8999999999866789999999997 9999876543322222222 22457777766432 378
Q ss_pred HHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 325 SLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 325 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
++++++.++++++.+++++.|+++++.+||+.++++...|++|++
T Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 319 (319)
T cd08242 275 PALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLRP 319 (319)
T ss_pred HHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeCC
Confidence 899999999987666678999999999999999877655998864
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=293.16 Aligned_cols=325 Identities=29% Similarity=0.418 Sum_probs=270.2
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC-----CC-----eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW-----PQ-----CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~-----~~-----~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++++++. +.+.+.+.|++.+++|+||++++++|+.|+.++.|.+ +. ++|+|+++|++++.+++||
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd 79 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD 79 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence 68999988875 9999999999999999999999999999999887754 21 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCc-----eEECCC
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC-----AVKVSS 157 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~-----~~~~P~ 157 (371)
+|++.+...|++|++|..++.++|...... |.. . .|+|++|+.++++. ++++|+
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~------------------~g~~~~~v~v~~~~~~~~~~~~lP~ 138 (343)
T cd08235 80 RVFVAPHVPCGECHYCLRGNENMCPNYKKF--GNL-Y------------------DGGFAEYVRVPAWAVKRGGVLKLPD 138 (343)
T ss_pred EEEEccCCCCCCChHHHCcCcccCCCccee--ccC-C------------------CCcceeeEEecccccccccEEECCC
Confidence 999999999999999999999999876542 211 1 24899999999998 999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
++++.+++.+ .++.+|++++ ...++++|++|||+|+|.+|++++++|+..|++.|+++++++++.+.++++|++++++
T Consensus 139 ~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~ 216 (343)
T cd08235 139 NVSFEEAALV-EPLACCINAQ-RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTID 216 (343)
T ss_pred CCCHHHHHhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEec
Confidence 9999999877 6889999998 4558999999999988999999999999999933999999999999999999998998
Q ss_pred CCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-heeeeccEEEecccC
Q 017460 238 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-GLFLSGRTLKGSLFG 315 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~ 315 (371)
++ +.++.+.+++++++ ++|+|+|++++...+...+++++++ |+++.++.........+.. ....++.++.++...
T Consensus 217 ~~--~~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 293 (343)
T cd08235 217 AA--EEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYAA 293 (343)
T ss_pred CC--ccCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEecC
Confidence 87 56788888888877 8999999999766788999999997 9999998654322122221 122346666655432
Q ss_pred CCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 316 GWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
. .+.+..+++++.++.+.+.+.+..+|+++++.++++.+.+++ . |+|+.
T Consensus 294 ~---~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~ 343 (343)
T cd08235 294 S---PEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT 343 (343)
T ss_pred C---hhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence 2 356888899999998875444568899999999999999888 6 88863
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=291.60 Aligned_cols=324 Identities=29% Similarity=0.433 Sum_probs=271.6
Q ss_pred eeEEEEecCCCC-eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCCC
Q 017460 13 CKAAVAWGAGQP-LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 13 ~~a~~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~~ 80 (371)
||++++..++.+ +.+.+.|.|.+.+++|+|++.++++|++|+..+.|.++ + ++|+|+.+|++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 799999998887 67788889999999999999999999999999888654 1 59999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
||+|+..+..+|+.|..|+.++.++|..... .|+. .+ |+|++|+.++.+.++++|++++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~ 139 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM--PGLG-ID------------------GGFAEYIVVPARALVPVPDGVP 139 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCc--cccc-cC------------------CcceeeEEechHHeEECCCCCC
Confidence 9999999999999999999999999965432 2222 22 4899999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
.++++.++.++.+||+++....+++++++|||.|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++++++.+
T Consensus 140 ~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~- 217 (338)
T cd08254 140 FAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSL- 217 (338)
T ss_pred HHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCC-
Confidence 999999999999999998777889999999999889999999999999999 899999999999999999998888775
Q ss_pred CCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCc
Q 017460 241 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 241 ~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 319 (371)
+..+.+.+ ..+.+ ++|+++|++|....++.++++++++ |+++.+|.......++... .+.++.++.++....
T Consensus 218 -~~~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 290 (338)
T cd08254 218 -DDSPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDLSD-LIARELRIIGSFGGT--- 290 (338)
T ss_pred -CcCHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCCCCCccCHHH-HhhCccEEEEeccCC---
Confidence 44565666 55555 8999999998767889999999997 9999998654322232221 223466777654321
Q ss_pred CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 320 KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
...+..+++++.++.+.+. .+.|+++++.++++.+.+++.. |+++++
T Consensus 291 ~~~~~~~~~ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 291 PEDLPEVLDLIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred HHHHHHHHHHHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 3568888999999987754 3789999999999999988877 888864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=295.98 Aligned_cols=328 Identities=26% Similarity=0.377 Sum_probs=260.9
Q ss_pred eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC------CC------C-----eEEEEEeeCCC
Q 017460 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ------WP------Q-----CCRIVESVGPG 74 (371)
Q Consensus 12 ~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~------~~------~-----~~G~V~~~G~~ 74 (371)
.+.+.++... +++++++|.|++++++|+||+.++++|++|++.+.+. ++ . ++|+|+++|++
T Consensus 28 ~~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~ 105 (384)
T cd08265 28 NLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKN 105 (384)
T ss_pred cceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCC
Confidence 3455566543 4999999999999999999999999999999877521 01 1 69999999999
Q ss_pred CCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEE
Q 017460 75 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK 154 (371)
Q Consensus 75 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~ 154 (371)
++.|++||+|++.+..+|+.|+.|+.+++++|..... .|+. .+ |+|++|+.++++.+++
T Consensus 106 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~--~g~~-~~------------------g~~~~~v~v~~~~~~~ 164 (384)
T cd08265 106 VKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE--LGFS-AD------------------GAFAEYIAVNARYAWE 164 (384)
T ss_pred CCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce--eeec-CC------------------CcceeeEEechHHeEE
Confidence 9999999999999999999999999999999986542 2221 12 4899999999999999
Q ss_pred CCCCC-------ChhhhhhcchhhhhHHhHhhhh-cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHH
Q 017460 155 VSSIA-------PLEKICLLSCGLSAGLGAAWNV-ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226 (371)
Q Consensus 155 ~P~~~-------~~~~aa~~~~~~~~a~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~ 226 (371)
+|+++ +.+ ++.+..++++||+++... .++++|++|||+|+|++|++++++|+++|+.+|++++++++|.+.
T Consensus 165 lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~ 243 (384)
T cd08265 165 INELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL 243 (384)
T ss_pred CCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 99863 455 555556889999998655 689999999999889999999999999998779999999999999
Q ss_pred HHHcCCceEeCCCCC-CchHHHHHHHHhCC-CccEEEEcCCCh-HHHHHHHHHhccCCceEEEecCCCCCCeeecchhee
Q 017460 227 AKAFGVTEFLNPNDN-NEPVQQVIKRITDG-GADYSFECIGDT-GMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF 303 (371)
Q Consensus 227 ~~~lg~~~vi~~~~~-~~~~~~~v~~~~~g-g~dvVid~~g~~-~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~ 303 (371)
++++|++++++++.. ..++.+.+++++++ ++|+|+|++|+. ..+..++++++++ |+++.+|.......+... ...
T Consensus 244 ~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~ 321 (384)
T cd08265 244 AKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAATTVPLHLE-VLQ 321 (384)
T ss_pred HHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCCCCcccHH-HHh
Confidence 999999988887521 22678889998887 999999999863 3678899999997 999999865432222211 111
Q ss_pred eeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEE
Q 017460 304 LSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVI 367 (371)
Q Consensus 304 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi 367 (371)
.+..++.+...... ...+.++++++.++.+++.++++++|+++++.+|++.+.++...|+++
T Consensus 322 ~~~~~l~~~~~~~~--~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv 383 (384)
T cd08265 322 VRRAQIVGAQGHSG--HGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI 383 (384)
T ss_pred hCceEEEEeeccCC--cchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence 34567776643221 346889999999999876655678999999999999976654337775
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=292.05 Aligned_cols=315 Identities=23% Similarity=0.384 Sum_probs=253.4
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC------------C----CC-----eEEEEEee
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ------------W----PQ-----CCRIVESV 71 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~------------~----~~-----~~G~V~~~ 71 (371)
|||+++.++ .+++++++.|++.+++|+||+.++++|++|++.+.|. . +. ++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 789999776 5999999999999999999999999999999888761 1 11 59999999
Q ss_pred CCCCCC-CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC
Q 017460 72 GPGVTE-FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 150 (371)
Q Consensus 72 G~~v~~-~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~ 150 (371)
|+++++ +++||+|++.+..+|+.|+.|..+ +. .. ..|+|+||++++.+
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~--------------~~-~~----------------~~g~~~~~~~v~~~ 127 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIG--------------LS-PE----------------APGGYAEYMLLSEA 127 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCC--------------CC-cC----------------CCCceeeeEEechH
Confidence 999987 999999999999999999999321 10 00 02489999999999
Q ss_pred ceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 151 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 151 ~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
.++++|++++.++++ ++.++++||+++ ..++++++++|||+|+|.+|.+++|+|+.+|++.++++++++++.+.++++
T Consensus 128 ~~~~lP~~~s~~~a~-~~~~~~~a~~~~-~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~ 205 (341)
T cd08262 128 LLLRVPDGLSMEDAA-LTEPLAVGLHAV-RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM 205 (341)
T ss_pred HeEECCCCCCHHHhh-hhhhHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc
Confidence 999999999999887 556888999985 788999999999999899999999999999996688888899999999999
Q ss_pred CCceEeCCCCCCc--hHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeecc
Q 017460 231 GVTEFLNPNDNNE--PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGR 307 (371)
Q Consensus 231 g~~~vi~~~~~~~--~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~ 307 (371)
|++++++++.... .+. .+...+.+ ++|++||++|+...+..++++++++ |+++.+|......... +...+.++.
T Consensus 206 g~~~~i~~~~~~~~~~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~-~~~~~~~~~ 282 (341)
T cd08262 206 GADIVVDPAADSPFAAWA-AELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCMESDNIE-PALAIRKEL 282 (341)
T ss_pred CCcEEEcCCCcCHHHHHH-HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCCccC-HHHHhhcce
Confidence 9988998762110 222 34555555 8999999998754788899999997 9999998763322111 111123566
Q ss_pred EEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 308 TLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 308 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
++.++.... .+.+.++++++.++.+.+.++++++|++++++++++.+.+++.. |++++
T Consensus 283 ~~~~~~~~~---~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 283 TLQFSLGYT---PEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred EEEEEeccc---HHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 666543221 24688899999999988766677999999999999999988877 88874
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=290.57 Aligned_cols=326 Identities=31% Similarity=0.411 Sum_probs=264.8
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC------C--CC-----eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ------W--PQ-----CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~------~--~~-----~~G~V~~~G~~v~~~~ 79 (371)
|||++++.++..+++.+.+.|.+.++|++||+.++++|++|+.++.+. . +. ++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 789999988766999999999999999999999999999998774331 1 11 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|+..+..+|+.|.+|..+++++|.... ..|.. . .|+|++|++++.+.++++|+++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~------------------~g~~~~~v~v~~~~~~~lP~~~ 139 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTK--ILGVD-T------------------DGCFAEYVVVPEENLWKNDKDI 139 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccc--eEecc-C------------------CCcceEEEEechHHcEECcCCC
Confidence 9999999999999999999999999997642 22221 1 2489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
+.+.+ .+..++.++++++. ...++|++|||+|+|.+|++++++|++.|+.+|++++++++|.+.++++|++++++++
T Consensus 140 ~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 216 (341)
T cd05281 140 PPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR 216 (341)
T ss_pred CHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcc
Confidence 98555 45557888888763 4567899999998899999999999999986688888889999999999999888876
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
..++. .+.+++++ ++|++||++|+...+..++++++++ |+++.+|.......+.+....+.++.++.+.....
T Consensus 217 --~~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 290 (341)
T cd05281 217 --EEDVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRK-- 290 (341)
T ss_pred --cccHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCCCcccccchhhhccceEEEEEecCC--
Confidence 45677 78888877 9999999998876789999999997 99999986543222222222334566776654221
Q ss_pred cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 319 PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
....+.++++++.++.+.+.+.+.++++++++.++|+.+.+++ . |+++++
T Consensus 291 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~ 341 (341)
T cd05281 291 MFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP 341 (341)
T ss_pred cchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence 1245778899999999876666678899999999999999888 7 998864
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=293.46 Aligned_cols=332 Identities=24% Similarity=0.360 Sum_probs=264.8
Q ss_pred eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcCCCC---C------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQWP---Q------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~~~---~------~~G~V~~~G~~v~~~~~Gd 82 (371)
||++++.+++ +++++++|.|.+ +++||+||+.++++|++|++.+.|.++ + ++|+|+++|++++.+++||
T Consensus 1 m~~~~~~~~~-~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (375)
T cd08282 1 MKAVVYGGPG-NVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEPGLVLGHEAMGEVEEVGSAVESLKVGD 79 (375)
T ss_pred CceEEEecCC-ceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCCCCCceeccccEEEEEEeCCCCCcCCCCC
Confidence 6889998876 499999999996 799999999999999999999988653 1 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccc----cccccCCCccceeccCcccccccCccceeeEEEeeCC--ceEECC
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLER----RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVS 156 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~----~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~~P 156 (371)
+|+..+..+|+.|..|..++.+.|....+.. +|+.+.. ...|+|++|+.++.+ .++++|
T Consensus 80 ~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~g~~a~y~~v~~~~~~~~~lP 144 (375)
T cd08282 80 RVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMG---------------PYGGGQAEYLRVPYADFNLLKLP 144 (375)
T ss_pred EEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccC---------------CCCCeeeeEEEeecccCcEEECC
Confidence 9999999999999999999999998643221 1111000 002589999999976 899999
Q ss_pred CCCChh---hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc
Q 017460 157 SIAPLE---KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233 (371)
Q Consensus 157 ~~~~~~---~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~ 233 (371)
++++++ +++.+..++++||+++ ..+.+++|++|+|.|+|.+|++++|+|+++|+.+|++++++++|.+.++++|+.
T Consensus 145 ~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~ 223 (375)
T cd08282 145 DRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI 223 (375)
T ss_pred CCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe
Confidence 999998 5677777899999998 788999999999998899999999999999976788999999999999999984
Q ss_pred eEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH-----------HHHHHHHHhccCCceEEEecCCCCCCe-------
Q 017460 234 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG-----------MITTALQSCCDGWGLAVTLGVPKLKPE------- 295 (371)
Q Consensus 234 ~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~-----------~l~~~~~~l~~~~G~~v~~g~~~~~~~------- 295 (371)
.++++ ..++.+.+.+++++++|+++||+|... .+..++++++++ |+++.+|.......
T Consensus 224 -~v~~~--~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~~~~~~~~~~ 299 (375)
T cd08282 224 -PIDFS--DGDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-GGIGIVGVYVAEDPGAGDAAA 299 (375)
T ss_pred -EeccC--cccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-cEEEEEeccCCcccccccccc
Confidence 56665 456777888877668999999998752 478999999997 99988876432100
Q ss_pred ----eecchhe-eeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 296 ----VAAHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 296 ----~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
..+.... +.++..+.+.... ....+..+++++.++++++.++++++|++++++++++.+.++. . |+++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~~ 375 (375)
T cd08282 300 KQGELSFDFGLLWAKGLSFGTGQAP---VKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETKVVIKP 375 (375)
T ss_pred cCccccccHHHHHhcCcEEEEecCC---chhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence 1111111 1234444443321 1346788899999999876555789999999999999998888 6 998753
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=290.50 Aligned_cols=322 Identities=30% Similarity=0.455 Sum_probs=262.2
Q ss_pred EEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcC----C----CCC-----eEEEEEeeCCCCCCCCCC
Q 017460 15 AAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET----Q----WPQ-----CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 15 a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g----~----~~~-----~~G~V~~~G~~v~~~~~G 81 (371)
|+++++++. +++.+.|.|.+.++||+|||.++++|+.|++.+.+ . .+. ++|+|+++|++++.+++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 467778865 99999999999999999999999999999876531 1 111 699999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
|+|++.+..+|+.|++|..+.+++|.+..+. +.... .|+|++|++++++.++++|++++.
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------~g~~~~~~~v~~~~~~~lP~~~~~ 139 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPV------------------DGTLCRYVNHPADFCHKLPDNVSL 139 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccC------------------CCceeeeEEecHHHcEECcCCCCH
Confidence 9999999999999999999999999754321 10001 248999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
++++.+ .++++|++++ +.+++++|++|||+|+|.+|++++++|+++|++.|+++++++++.+.++++|++.+++++
T Consensus 140 ~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~-- 215 (343)
T cd05285 140 EEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVR-- 215 (343)
T ss_pred HHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccc--
Confidence 999877 4788999986 889999999999998899999999999999994499999999999999999999999886
Q ss_pred Cch---HHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCC
Q 017460 242 NEP---VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGW 317 (371)
Q Consensus 242 ~~~---~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 317 (371)
..+ +.+.+.+.+++ ++|++||++|+...+...+++++++ |+++.+|.......+++. ....++.++.++...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~-- 291 (343)
T cd05285 216 TEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKPEVTLPLS-AASLREIDIRGVFRY-- 291 (343)
T ss_pred cccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCCccCHH-HHhhCCcEEEEeccC--
Confidence 344 37778888877 8999999999865788999999997 999999865432222222 122346666665422
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCC-e-eeEEE
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK-C-LRSVI 367 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~-~-~kvvi 367 (371)
...+..+++++.++.+.+.+.+.++|+++++.+|++.+.+++ . .|++|
T Consensus 292 --~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 292 --ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred --hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 246888899999998765555678999999999999998875 3 49987
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=289.71 Aligned_cols=324 Identities=23% Similarity=0.368 Sum_probs=264.0
Q ss_pred eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C-----eEEEEEeeCCCCCCCCCCCE
Q 017460 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q-----CCRIVESVGPGVTEFNEGEH 83 (371)
Q Consensus 14 ~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~-----~~G~V~~~G~~v~~~~~Gd~ 83 (371)
|+++.+..+..+++.+++.|++.++||+||+.++++|++|++.+.|... . ++|+|+++|++++.+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR 80 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence 5677878777799999999999999999999999999999999887542 1 69999999999999999999
Q ss_pred EE-eeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 84 VL-TVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 84 V~-~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
|+ ......|++|++|+.++.++|.......+|.. ..+ ....|+|+||+.++.+.++++|++++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~g~~~~~~~v~~~~~~~lp~~~~~~ 146 (337)
T cd05283 81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKY-PDG-------------TITQGGYADHIVVDERFVFKIPEGLDSA 146 (337)
T ss_pred EEEecCCCCCCCCccccCCchhcCcchhhcccccc-cCC-------------CcCCCcceeEEEechhheEECCCCCCHH
Confidence 98 44556899999999999999987554322211 101 0113589999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
+++.+.+.+.+||+++ +..++++|++|+|.|+|.+|++++++|+..|+ +++++++++++++.++++|++.+++.+ .
T Consensus 147 ~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~--~ 222 (337)
T cd05283 147 AAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATK--D 222 (337)
T ss_pred HhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCc--c
Confidence 9999999999999987 45568999999999889999999999999999 999999999999999999999888775 3
Q ss_pred chHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccCCCCcCC
Q 017460 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~ 321 (371)
.++.. . .++++|++||+++....+..++++++++ |+++.+|...... .++... +.++.++.++.... .+
T Consensus 223 ~~~~~---~-~~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~--~~~~~~~~~~~~~i~~~~~~~---~~ 292 (337)
T cd05283 223 PEAMK---K-AAGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEEPL--PVPPFPLIFGRKSVAGSLIGG---RK 292 (337)
T ss_pred hhhhh---h-ccCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCCCC--ccCHHHHhcCceEEEEecccC---HH
Confidence 23322 1 2348999999999865588999999997 9999998764322 222222 34688888877653 35
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
++..+++++.++++.+ .+ ++|+++++++||+.+.+++.. |+||+
T Consensus 293 ~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 293 ETQEMLDFAAEHGIKP--WV-EVIPMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred HHHHHHHHHHhCCCcc--ce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence 7888899999998754 34 789999999999999998887 88874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=287.75 Aligned_cols=327 Identities=28% Similarity=0.453 Sum_probs=267.8
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC----CC-----eEEEEEeeCCCCCCCCCCCE
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW----PQ-----CCRIVESVGPGVTEFNEGEH 83 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~----~~-----~~G~V~~~G~~v~~~~~Gd~ 83 (371)
|||+++++.+. +++++.+.|+++++||+||+.++++|++|+..+.|.+ +. ++|+|+.+|++++.|++||+
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~ 79 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYHPPLVLGHEFSGTVEEVGSGVDDLAVGDR 79 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCCCCCcccCcceEEEEEEECCCCCcCCCCCE
Confidence 78999998875 9999999999999999999999999999998887754 11 69999999999999999999
Q ss_pred EEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhh
Q 017460 84 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK 163 (371)
Q Consensus 84 V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~ 163 (371)
|++.+...|+.|.+|..+....|..... .|.. . .|+|++|+.++++.++++|+++++++
T Consensus 80 V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~~~~~~~~~lP~~~~~~~ 138 (343)
T cd08236 80 VAVNPLLPCGKCEYCKKGEYSLCSNYDY--IGSR-R------------------DGAFAEYVSVPARNLIKIPDHVDYEE 138 (343)
T ss_pred EEEcCCCCCCCChhHHCcChhhCCCcce--Eecc-c------------------CCcccceEEechHHeEECcCCCCHHH
Confidence 9999999999999999999999987643 1111 1 24899999999999999999999999
Q ss_pred hhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 164 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 164 aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
++++ .++++||+++ ....++++++|||+|+|.+|++++++|+++|+.+|+++++++++.+.++++|++.+++++ ..
T Consensus 139 aa~~-~~~~ta~~~l-~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~--~~ 214 (343)
T cd08236 139 AAMI-EPAAVALHAV-RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPK--EE 214 (343)
T ss_pred HHhc-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCc--cc
Confidence 9888 4788999998 478899999999998899999999999999994499999999999999999998899886 44
Q ss_pred hHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecc-h-heeeeccEEEecccCCCCc-
Q 017460 244 PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH-Y-GLFLSGRTLKGSLFGGWKP- 319 (371)
Q Consensus 244 ~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~-~~~~~~~~i~g~~~~~~~~- 319 (371)
. .+.++...++ ++|++||++|....+..++++++++ |+++.+|.......+... . ..+.++.++.++.......
T Consensus 215 ~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (343)
T cd08236 215 D-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPF 292 (343)
T ss_pred c-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeecccccc
Confidence 5 6777777777 8999999998766789999999997 999999865432212111 1 1123577777765432211
Q ss_pred -CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHc-CCee-eEEE
Q 017460 320 -KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKE-GKCL-RSVI 367 (371)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~-~~~~-kvvi 367 (371)
.+.+.++++++.++.+.+.+.+...++++++.++++.+.+ .... |+|+
T Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 293 PGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred chhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 3467788889999987644445689999999999999988 5555 7764
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=286.28 Aligned_cols=324 Identities=29% Similarity=0.439 Sum_probs=271.5
Q ss_pred eeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCCC
Q 017460 13 CKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 13 ~~a~~~~~~~-~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~~ 80 (371)
|||++++.++ ..+++.+++.|.+.+++++||+.++++|++|..++.|.++ + ++|+|+++|++++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 7999998876 3499999999999999999999999999999988877543 1 69999999999999999
Q ss_pred CCEEEeee-cCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 81 GEHVLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 81 Gd~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
||+|+..+ ...|+.|.+|+.++.++|..... .|+. .. |++++|+.++++.++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~s~~~~~~~~~~~lp~~~ 139 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN--SGYT-VD------------------GTFAEYAIADARYVTPIPDGL 139 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccc--cccc-cC------------------CcceeEEEeccccEEECCCCC
Confidence 99999876 57899999999999999977543 2322 22 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+..+++.++..+.+||+++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++++++++++.++++|++.++++
T Consensus 140 ~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~ 217 (341)
T cd08297 140 SFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDF 217 (341)
T ss_pred CHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEcC
Confidence 999999999899999999754 58999999999986 6799999999999999 99999999999999999999999988
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~ 316 (371)
+ ..++.+.+.+++++ ++|++||+.++...+..++++++++ |+++.+|.... ...+++... +.++.++.+.....
T Consensus 218 ~--~~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 293 (341)
T cd08297 218 K--KSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPG-GFIPLDPFDLVLRGITIVGSLVGT 293 (341)
T ss_pred C--CccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCCC-CCCCCCHHHHHhcccEEEEeccCC
Confidence 6 55788888888876 9999999887667889999999997 99999986543 222222221 14577777654322
Q ss_pred CCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 317 WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.+.+.++++++.++++.+ .+ +.|+++++.++|+.+..+... |+++++
T Consensus 294 ---~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 294 ---RQDLQEALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred ---HHHHHHHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 356888999999998754 34 679999999999999988877 998875
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=286.49 Aligned_cols=264 Identities=23% Similarity=0.331 Sum_probs=215.3
Q ss_pred eEEEEEeeCCCCC------CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccC
Q 017460 64 CCRIVESVGPGVT------EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCA 137 (371)
Q Consensus 64 ~~G~V~~~G~~v~------~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~ 137 (371)
++|+|+++|++|+ +|++||||++.+..+|+.|.+|+.++++.|.+.... |.. ..+. +...
T Consensus 6 ~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~--g~~-~~~~-----------~~~~ 71 (280)
T TIGR03366 6 IVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY--GHE-ALDS-----------GWPL 71 (280)
T ss_pred cceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhc--Ccc-cccC-----------Cccc
Confidence 6899999999999 899999999999999999999999999999875532 211 0000 0001
Q ss_pred ccceeeEEEeeCC-ceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEE
Q 017460 138 VSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIG 216 (371)
Q Consensus 138 ~g~~a~~~~~~~~-~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~ 216 (371)
.|+|+||++++++ .++++|+++++++++.+++.+.|+++++ +.....++++|||+|+|++|++++|+|+++|+++|++
T Consensus 72 ~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~ 150 (280)
T TIGR03366 72 SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVA 150 (280)
T ss_pred cccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 2589999999987 7999999999999999998999999987 5556679999999999999999999999999955999
Q ss_pred EcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCe
Q 017460 217 VDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE 295 (371)
Q Consensus 217 ~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~ 295 (371)
++++++|+++++++|++.++++. . ..+.+++++++ ++|++||++|....++.++++++++ |+++.+|.......
T Consensus 151 ~~~~~~r~~~a~~~Ga~~~i~~~--~--~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~ 225 (280)
T TIGR03366 151 ADPSPDRRELALSFGATALAEPE--V--LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGSVFPGGP 225 (280)
T ss_pred ECCCHHHHHHHHHcCCcEecCch--h--hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEeccCCCCCc
Confidence 99999999999999999888864 2 35567777777 8999999999877899999999997 99999997542223
Q ss_pred eecchhe-eeeccEEEecccCCCCcCCCHHHHHHHHHcC--CCCCCcceeeeecchhH
Q 017460 296 VAAHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKK--EFMVDEFITHNLLFEDI 350 (371)
Q Consensus 296 ~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~ 350 (371)
.+++... +.+++++.|+.... .+++.++++++.++ ++++.++++++|+++++
T Consensus 226 ~~i~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 226 VALDPEQVVRRWLTIRGVHNYE---PRHLDQAVRFLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred eeeCHHHHHhCCcEEEecCCCC---HHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence 3333322 35689999876432 35789999999984 66677889999999873
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=283.70 Aligned_cols=319 Identities=30% Similarity=0.478 Sum_probs=263.3
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++..+++++.+.+.|.|.+.+++|+|+++++++|++|++.+.|.++. ++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd 80 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD 80 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence 789999876667999999999999999999999999999999998875431 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
+|++.++..|+.|++|..+..++|.+.. ..|.. . .|+|++|++++.+.++++|++++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~~~ 139 (332)
T cd08259 81 RVILYYYIPCGKCEYCLSGEENLCRNRA--EYGEE-V------------------DGGFAEYVKVPERSLVKLPDNVSDE 139 (332)
T ss_pred EEEECCCCCCcCChhhhCCCcccCCCcc--ccccc-c------------------CCeeeeEEEechhheEECCCCCCHH
Confidence 9999999999999999999999998752 23332 2 2489999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
+++.+++++.+||+++.. +++.+++++||+|+ |.+|++++++++..|+ +|+++++++++.+.++++|.+.+++..
T Consensus 140 ~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-- 215 (332)
T cd08259 140 SAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS-- 215 (332)
T ss_pred HHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH--
Confidence 999999999999999855 88999999999986 9999999999999999 899999999999999999988777663
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCe-eecchheeeeccEEEecccCCCCcC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE-VAAHYGLFLSGRTLKGSLFGGWKPK 320 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~ 320 (371)
+ +.+.+.+.. ++|++++++|.. .+..++++++++ |+++.++....... +...... .++.++.++... ..
T Consensus 216 ~--~~~~~~~~~--~~d~v~~~~g~~-~~~~~~~~~~~~-g~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~ 285 (332)
T cd08259 216 K--FSEDVKKLG--GADVVIELVGSP-TIEESLRSLNKG-GRLVLIGNVTPDPAPLRPGLLI-LKEIRIIGSISA---TK 285 (332)
T ss_pred H--HHHHHHhcc--CCCEEEECCChH-HHHHHHHHhhcC-CEEEEEcCCCCCCcCCCHHHHH-hCCcEEEEecCC---CH
Confidence 2 556665543 799999999975 578899999996 99999986543211 1222222 346666655321 13
Q ss_pred CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 321 TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
.++.++++++.++.+.+ .++++|+++++.+||+.+.++... |++++
T Consensus 286 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 286 ADVEEALKLVKEGKIKP--VIDRVVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred HHHHHHHHHHHcCCCcc--ceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 46788899999988654 366899999999999999988777 88763
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=284.80 Aligned_cols=299 Identities=19% Similarity=0.276 Sum_probs=250.2
Q ss_pred eeEEEEecCCCC---eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------C-----eEEEEEeeCCCCCCC
Q 017460 13 CKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------Q-----CCRIVESVGPGVTEF 78 (371)
Q Consensus 13 ~~a~~~~~~~~~---l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------~-----~~G~V~~~G~~v~~~ 78 (371)
|||+++.+++++ +++.++|.|.+.++||+|||.++++|++|++.+.|.++ . ++|+|+++|++++.+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 789999887753 78899999999999999999999999999998877543 1 699999999999999
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
++||+|++.+ .. |+|++|+.+++..++++|++
T Consensus 81 ~~Gd~V~~~~------------------------------~~------------------g~~~~~~~~~~~~~~~ip~~ 112 (324)
T cd08292 81 QVGQRVAVAP------------------------------VH------------------GTWAEYFVAPADGLVPLPDG 112 (324)
T ss_pred CCCCEEEecc------------------------------CC------------------CcceeEEEEchHHeEECCCC
Confidence 9999999862 12 38999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
++.++++.+++.+.++++++ +.+++++|++|||+|+ |.+|++++++|+++|+ +++++.+++++++.++++|++++++
T Consensus 113 ~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~ 190 (324)
T cd08292 113 ISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVS 190 (324)
T ss_pred CCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEc
Confidence 99999999988889999987 5688999999999986 9999999999999999 8999989999999998899988888
Q ss_pred CCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh-eeeeccEEEecccC
Q 017460 238 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG-LFLSGRTLKGSLFG 315 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~ 315 (371)
++ ..++.+.+++++++ ++|+|||++|+. .+..++++++++ |+++.+|.... ....+... .+.++.++.++...
T Consensus 191 ~~--~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 265 (324)
T cd08292 191 TE--QPGWQDKVREAAGGAPISVALDSVGGK-LAGELLSLLGEG-GTLVSFGSMSG-EPMQISSGDLIFKQATVRGFWGG 265 (324)
T ss_pred CC--CchHHHHHHHHhCCCCCcEEEECCCCh-hHHHHHHhhcCC-cEEEEEecCCC-CCCcCCHHHHhhCCCEEEEEEcH
Confidence 86 66788899999988 999999999985 678999999997 99999986532 22222221 22468888877654
Q ss_pred CCCc-------CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 316 GWKP-------KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 316 ~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
.+.. ...+.++++++.++.+++. +.++|+++++.+|++.+.++... |++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 324 (324)
T cd08292 266 RWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDLGDAAKAAAASMRPGRAGKVLLR 324 (324)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence 3221 1357778889999988754 35889999999999999877666 88763
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=283.49 Aligned_cols=325 Identities=23% Similarity=0.349 Sum_probs=269.1
Q ss_pred eeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~ 79 (371)
|||+++...+. .+++.+.+.|.+.+++|+|+++++++|++|++++.|..+ + ++|+|+.+|++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 68999874443 378888888889999999999999999999998887643 1 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|++.+...|+.|.+|.++++++|....+ .|.. .. |+|++|+.++.+.++++|+++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~~------------------g~~~~~~~~~~~~~~~~p~~~ 139 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI--LGEH-VD------------------GGYAEYVAVPARNLLPIPDNL 139 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccc--cccc-cC------------------cceeEEEEechHHceeCCCCC
Confidence 99999999999999999999999999987532 2221 11 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+..+++.+++++.+|++++.+..++.++++++|+|+ +.+|+++++++++.|+ +|+++++++++.+.+++++.+.+++.
T Consensus 140 ~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~ 218 (342)
T cd08266 140 SFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDY 218 (342)
T ss_pred CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEec
Confidence 999999999899999999877888999999999986 7999999999999999 89999999999999988988777776
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-heeeeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-GLFLSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~~ 316 (371)
. +.++.+.+...+.+ ++|++++++|.. .+...+++++++ |+++.++..... ...... ..+.++.++.+.....
T Consensus 219 ~--~~~~~~~~~~~~~~~~~d~~i~~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 293 (342)
T cd08266 219 R--KEDFVREVRELTGKRGVDVVVEHVGAA-TWEKSLKSLARG-GRLVTCGATTGY-EAPIDLRHVFWRQLSILGSTMGT 293 (342)
T ss_pred C--ChHHHHHHHHHhCCCCCcEEEECCcHH-HHHHHHHHhhcC-CEEEEEecCCCC-CCCcCHHHHhhcceEEEEEecCC
Confidence 5 55677777777766 899999999974 688999999997 999999866442 112222 2234577777765433
Q ss_pred CCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 317 WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
...+..+++++.++.+.+ ++++.|+++++.++++.+.++... |+++++
T Consensus 294 ---~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 294 ---KAELDEALRLVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred ---HHHHHHHHHHHHcCCccc--ceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 236778888998888654 356899999999999999887776 888763
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=282.11 Aligned_cols=321 Identities=29% Similarity=0.439 Sum_probs=264.7
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCCCCE
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNEGEH 83 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~Gd~ 83 (371)
|||+++.++++ +++.+.+.|+++++||+||++++++|+.|+....|.++. ++|+|+.+|++++.+++||+
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~ 79 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAAPPLVPGHEFAGVVVAVGSKVTGFKVGDR 79 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCE
Confidence 78999988875 999999999999999999999999999999988876431 69999999999999999999
Q ss_pred EEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhh
Q 017460 84 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK 163 (371)
Q Consensus 84 V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~ 163 (371)
|++.+...|+.|.+|..+++++|..... .|.. .. |+|++|+.++.+.++++|++++..+
T Consensus 80 V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~lP~~~~~~~ 138 (334)
T cd08234 80 VAVDPNIYCGECFYCRRGRPNLCENLTA--VGVT-RN------------------GGFAEYVVVPAKQVYKIPDNLSFEE 138 (334)
T ss_pred EEEcCCcCCCCCccccCcChhhCCCcce--eccC-CC------------------CcceeEEEecHHHcEECcCCCCHHH
Confidence 9998889999999999999999987653 2211 12 4899999999999999999999999
Q ss_pred hhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 164 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 164 aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
++.+ ..+.++++++ ..++++++++|||+|+|.+|++++++|++.|+.+|+++++++++.+.++++|++.++++. ..
T Consensus 139 aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~ 214 (334)
T cd08234 139 AALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPS--RE 214 (334)
T ss_pred Hhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCC--CC
Confidence 9876 6888999987 788999999999998899999999999999994489999999999999999998888776 34
Q ss_pred hHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCCCCcCC
Q 017460 244 PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 244 ~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~ 321 (371)
++... +.+.+ ++|++||+++....+...+++++++ |+++.+|.........+....+ .++.++.+.... ..
T Consensus 215 ~~~~~--~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 287 (334)
T cd08234 215 DPEAQ--KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN----PY 287 (334)
T ss_pred CHHHH--HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC----HH
Confidence 44444 34444 8999999998766788999999997 9999998654322233333222 246677665432 24
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
.+.++++++.++++.+.+.++.+|+++++.++++.+.+ ... |++|
T Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi 333 (334)
T cd08234 288 TFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV 333 (334)
T ss_pred HHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence 68888999999988766556789999999999999988 555 8776
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=285.03 Aligned_cols=304 Identities=20% Similarity=0.243 Sum_probs=239.7
Q ss_pred ceeeeEEEEecCCC------CeEEEEe---ecCC-CCCCcEEEEEeeecCCcchhhhhcC---C--CCC-------eEEE
Q 017460 10 VITCKAAVAWGAGQ------PLVVEEV---EVNP-PQPEEIRIKVVCTSLCRSDITAWET---Q--WPQ-------CCRI 67 (371)
Q Consensus 10 ~~~~~a~~~~~~~~------~l~~~~~---~~p~-~~~~evlV~v~~~~i~~~D~~~~~g---~--~~~-------~~G~ 67 (371)
+.+.|++++.+..+ .|++.+. +.|. +++||||||+.|+++|+.|.....+ . .|. .+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G~ 85 (348)
T PLN03154 6 VVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFGV 85 (348)
T ss_pred cccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeEE
Confidence 44568888744332 1777763 5653 4899999999999999998764322 1 121 4889
Q ss_pred EEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEe
Q 017460 68 VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 147 (371)
Q Consensus 68 V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~ 147 (371)
|..+|++++.|++||+|+.. |+|+||..+
T Consensus 86 v~~vg~~v~~~~~Gd~V~~~---------------------------------------------------~~~aey~~v 114 (348)
T PLN03154 86 SKVVDSDDPNFKPGDLISGI---------------------------------------------------TGWEEYSLI 114 (348)
T ss_pred EEEEecCCCCCCCCCEEEec---------------------------------------------------CCcEEEEEE
Confidence 99999999999999999854 379999999
Q ss_pred eCC--ceEE--CCCCCChh-hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 148 HSG--CAVK--VSSIAPLE-KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 148 ~~~--~~~~--~P~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.. .+++ +|++++++ +++.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++++++
T Consensus 115 ~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~ 193 (348)
T PLN03154 115 RSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSS 193 (348)
T ss_pred eccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 875 3544 59999986 688899999999999877788999999999986 9999999999999999 899999999
Q ss_pred hhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC-ee---
Q 017460 222 EKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP-EV--- 296 (371)
Q Consensus 222 ~~~~~~~-~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~-~~--- 296 (371)
++++.++ ++|+++++++++ ..++.+.+++++++++|++||++|+ ..+..++++++++ |+++.+|...... ..
T Consensus 194 ~k~~~~~~~lGa~~vi~~~~-~~~~~~~i~~~~~~gvD~v~d~vG~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~ 270 (348)
T PLN03154 194 QKVDLLKNKLGFDEAFNYKE-EPDLDAALKRYFPEGIDIYFDNVGG-DMLDAALLNMKIH-GRIAVCGMVSLNSLSASQG 270 (348)
T ss_pred HHHHHHHHhcCCCEEEECCC-cccHHHHHHHHCCCCcEEEEECCCH-HHHHHHHHHhccC-CEEEEECccccCCCCCCCC
Confidence 9999997 799999998862 2367788888776689999999997 4789999999997 9999999754321 00
Q ss_pred ecc-hheeeeccEEEecccCCCCc--CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 297 AAH-YGLFLSGRTLKGSLFGGWKP--KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 297 ~~~-~~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
... ...+.+++++.|+....+.. .+.+.++++++.+|++++. ++.+|+|+++++|++.+.+++.. |+||++.
T Consensus 271 ~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~--~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~ 346 (348)
T PLN03154 271 IHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYI--EDMSEGLESAPAALVGLFSGKNVGKQVIRVA 346 (348)
T ss_pred cccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCc--eecccCHHHHHHHHHHHHcCCCCceEEEEec
Confidence 011 12234688888876543221 1346778999999998753 56789999999999999999888 9999875
|
|
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=262.05 Aligned_cols=311 Identities=23% Similarity=0.321 Sum_probs=247.7
Q ss_pred CcCCCCccceeeeEEEEecCCCC---eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEE
Q 017460 2 STSIKQPQVITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRI 67 (371)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~ 67 (371)
+.+..+ ++...|+++|++.|.| +++++.+.|+...++|+||.+|+.||++|+..++|.||. .+|+
T Consensus 10 ~ssa~q-~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~e 88 (354)
T KOG0025|consen 10 SSSASQ-MPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGE 88 (354)
T ss_pred cccccc-cccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEE
Confidence 334333 6777899999999987 888999999998888999999999999999999999875 4999
Q ss_pred EEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEe
Q 017460 68 VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 147 (371)
Q Consensus 68 V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~ 147 (371)
|+.+|+++++|++||+|+.. ..+ .|+|++|.+.
T Consensus 89 Vv~vGs~vkgfk~Gd~VIp~-------------------------------~a~----------------lGtW~t~~v~ 121 (354)
T KOG0025|consen 89 VVAVGSNVKGFKPGDWVIPL-------------------------------SAN----------------LGTWRTEAVF 121 (354)
T ss_pred EEEecCCcCccCCCCeEeec-------------------------------CCC----------------CccceeeEee
Confidence 99999999999999999987 222 4699999999
Q ss_pred eCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHH
Q 017460 148 HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226 (371)
Q Consensus 148 ~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~ 226 (371)
+++.++++++.++++.||++....+|||++|...-++.+||+|+-+|+ +++|++.+|+|+++|+ +-+.+.|+....+.
T Consensus 122 ~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~iee 200 (354)
T KOG0025|consen 122 SESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEE 200 (354)
T ss_pred cccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHH
Confidence 999999999999999999999999999999988899999999999987 8999999999999999 66666676655544
Q ss_pred ----HHHcCCceEeCCCCCCchHHHHHHHH-hCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-Ceeecc
Q 017460 227 ----AKAFGVTEFLNPNDNNEPVQQVIKRI-TDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAH 299 (371)
Q Consensus 227 ----~~~lg~~~vi~~~~~~~~~~~~v~~~-~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~ 299 (371)
++.+||++||... +......+.. ... .+.+.|+|+|+. ...+..+.|..+ |.++.+|..... .+++.+
T Consensus 201 l~~~Lk~lGA~~ViTee---el~~~~~~k~~~~~~~prLalNcVGGk-sa~~iar~L~~G-gtmvTYGGMSkqPv~~~ts 275 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEE---ELRDRKMKKFKGDNPRPRLALNCVGGK-SATEIARYLERG-GTMVTYGGMSKQPVTVPTS 275 (354)
T ss_pred HHHHHHHcCCceEecHH---HhcchhhhhhhccCCCceEEEeccCch-hHHHHHHHHhcC-ceEEEecCccCCCcccccc
Confidence 4679999999543 1111222222 223 789999999996 566778889998 999999987553 233333
Q ss_pred hheeeeccEEEecccCCCCcC--------CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee--eEEEeC
Q 017460 300 YGLFLSGRTLKGSLFGGWKPK--------TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL--RSVIHM 369 (371)
Q Consensus 300 ~~~~~~~~~i~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~--kvvi~~ 369 (371)
+.. +++++++|+++..|... +.+.++.+++..|++...+. ...+|++...|++...+.... |-+|.+
T Consensus 276 ~lI-FKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~--e~v~L~~~~tald~~L~~~~~~~Kq~i~~ 352 (354)
T KOG0025|consen 276 LLI-FKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNC--EKVPLADHKTALDAALSKFGKSGKQIIVL 352 (354)
T ss_pred hhe-eccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccc--eeeechhhhHHHHHHHHHhccCCceEEEe
Confidence 443 68999999999888753 23556788889999876643 456888888888865444332 555543
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=281.91 Aligned_cols=322 Identities=26% Similarity=0.409 Sum_probs=254.8
Q ss_pred EEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhc-CCC-------CC-----eEEEEEeeCCCCCCCCCCCE
Q 017460 17 VAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQW-------PQ-----CCRIVESVGPGVTEFNEGEH 83 (371)
Q Consensus 17 ~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~-g~~-------~~-----~~G~V~~~G~~v~~~~~Gd~ 83 (371)
++++.++ +++.+.+.|.++++||+||+.++++|++|+..+. |.. +. ++|+|+++|++++.|++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 4666665 9999999999999999999999999999987763 321 11 69999999999999999999
Q ss_pred EEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhh
Q 017460 84 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK 163 (371)
Q Consensus 84 V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~ 163 (371)
|++.+..+|++|.+|..|.++.|.+... .|.. . + .+...|+|++|++++++.++++|++++.++
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~-~-~------------~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~ 144 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF--LGSA-M-R------------FPHVQGGFREYLVVDASQCVPLPDGLSLRR 144 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccc--eeec-c-c------------cCCCCCceeeEEEechHHeEECcCCCCHHH
Confidence 9999999999999999999999997432 1110 0 0 000125899999999999999999999999
Q ss_pred hhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 164 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 164 aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
|+. ..+++++++++.+...+ ++++|||.|+|.+|++++|+|+++|+.+++++++++++.++++++|++++++++ ..
T Consensus 145 aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~--~~ 220 (339)
T cd08232 145 AAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLA--RD 220 (339)
T ss_pred hhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCC--ch
Confidence 876 46888999987555445 899999998899999999999999986789999999999999999999999876 32
Q ss_pred hHHHHHHHHh-CC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCC
Q 017460 244 PVQQVIKRIT-DG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKT 321 (371)
Q Consensus 244 ~~~~~v~~~~-~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 321 (371)
+ +..+. .. ++|+++|++++...++..+++++++ |+++.+|........+.... +.++.++.+.... ..
T Consensus 221 ~----~~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~ 290 (339)
T cd08232 221 P----LAAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLGGPVPLPLNAL-VAKELDLRGSFRF----DD 290 (339)
T ss_pred h----hhhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCccCcHHHH-hhcceEEEEEecC----HH
Confidence 3 22232 23 7999999999766788999999997 99999986442222222111 2356677665421 34
Q ss_pred CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 322 DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.+.++++++.++.+++.+.+.++|++++++++++.+.++... |+|+++
T Consensus 291 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 291 EFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred HHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence 688889999999887666667899999999999999887766 998864
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=284.91 Aligned_cols=300 Identities=19% Similarity=0.227 Sum_probs=239.0
Q ss_pred eeeEEEEecCCC-CeEEEEeec----CCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------e--EEEEEeeCC
Q 017460 12 TCKAAVAWGAGQ-PLVVEEVEV----NPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------C--CRIVESVGP 73 (371)
Q Consensus 12 ~~~a~~~~~~~~-~l~~~~~~~----p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~--~G~V~~~G~ 73 (371)
-+|++....+.. .|++.+.+. |+|+++||||||+|++||+.|++.+.|.++ + + .|++..+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~ 86 (338)
T cd08295 7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS 86 (338)
T ss_pred EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence 455555444443 389988877 889999999999999999999998877421 1 2 356666788
Q ss_pred CCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeC-Cce
Q 017460 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS-GCA 152 (371)
Q Consensus 74 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~-~~~ 152 (371)
+++.|++||+|+.+ |+|+||+++++ ..+
T Consensus 87 ~v~~~~vGd~V~~~---------------------------------------------------g~~aey~~v~~~~~~ 115 (338)
T cd08295 87 GNPDFKVGDLVWGF---------------------------------------------------TGWEEYSLIPRGQDL 115 (338)
T ss_pred CCCCCCCCCEEEec---------------------------------------------------CCceeEEEecchhce
Confidence 88899999999854 37999999999 799
Q ss_pred EECC-CCCChh-hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 153 VKVS-SIAPLE-KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 153 ~~~P-~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
+++| +++++. +++.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++++++
T Consensus 116 ~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 116 RKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKN 194 (338)
T ss_pred eecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 9995 678886 788899999999999877889999999999986 9999999999999999 89999999999999988
Q ss_pred -cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCe------eecchhe
Q 017460 230 -FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE------VAAHYGL 302 (371)
Q Consensus 230 -lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~------~~~~~~~ 302 (371)
+|+++++++.+ ..++.+.+++.+++++|+|||++|+ ..+..++++++++ |+++.+|....... .++ ...
T Consensus 195 ~lGa~~vi~~~~-~~~~~~~i~~~~~~gvd~v~d~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~-~~~ 270 (338)
T cd08295 195 KLGFDDAFNYKE-EPDLDAALKRYFPNGIDIYFDNVGG-KMLDAVLLNMNLH-GRIAACGMISQYNLEWPEGVRNL-LNI 270 (338)
T ss_pred hcCCceeEEcCC-cccHHHHHHHhCCCCcEEEEECCCH-HHHHHHHHHhccC-cEEEEecccccCCCCCCCCccCH-HHH
Confidence 99999998652 3467778887775699999999997 5789999999997 99999986543211 111 122
Q ss_pred eeeccEEEecccCCCCc--CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 303 FLSGRTLKGSLFGGWKP--KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 303 ~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+.++.++.++....+.. ...+.++++++.++++++. +...|+++++.+|++.+.+++.. |+|+++
T Consensus 271 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 271 IYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIADGLESAPEAFVGLFTGSNIGKQVVKV 338 (338)
T ss_pred hhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence 24567777765433221 1236778889999988765 34679999999999999988877 999864
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=280.76 Aligned_cols=323 Identities=28% Similarity=0.401 Sum_probs=260.8
Q ss_pred EecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC--------CCC-----eEEEEEeeCCCCCCCCCCCEE
Q 017460 18 AWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--------WPQ-----CCRIVESVGPGVTEFNEGEHV 84 (371)
Q Consensus 18 ~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~--------~~~-----~~G~V~~~G~~v~~~~~Gd~V 84 (371)
.++++.++++.+.|.|.++++||+||+.++++|++|+.++.+. ++. ++|+|+++|++++.+++||+|
T Consensus 4 ~~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V 83 (340)
T TIGR00692 4 KTKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYV 83 (340)
T ss_pred cccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEE
Confidence 4577888999999999999999999999999999998875432 111 699999999999999999999
Q ss_pred EeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhh
Q 017460 85 LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKI 164 (371)
Q Consensus 85 ~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~a 164 (371)
++.++..|+.|..|..+..++|.+.+. .|+. . .|+|++|++++++.++++|++++..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 84 SVETHIVCGKCYACRRGQYHVCQNTKI--FGVD-T------------------DGCFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred EECCcCCCCCChhhhCcChhhCcCcce--Eeec-C------------------CCcceeEEEeehHHcEECcCCCChHhh
Confidence 999999999999999999999998743 2322 1 248999999999999999999998655
Q ss_pred hhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCch
Q 017460 165 CLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 244 (371)
Q Consensus 165 a~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~ 244 (371)
+ ++.++.++++++ .....+|++|+|.|+|++|++++|+|+++|++.|+++++++++.+.++++|++.++++. ..+
T Consensus 143 ~-~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~--~~~ 217 (340)
T TIGR00692 143 T-IQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPF--KED 217 (340)
T ss_pred h-hcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEccc--ccC
Confidence 4 556888998876 34578899999988899999999999999994488888888899999999998888876 567
Q ss_pred HHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCCCH
Q 017460 245 VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDL 323 (371)
Q Consensus 245 ~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 323 (371)
+.+.+.+++++ ++|++||++|+...+...+++++++ |+++.+|.......+++....+.++.++.+..... ....+
T Consensus 218 ~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 294 (340)
T TIGR00692 218 VVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRH--MFETW 294 (340)
T ss_pred HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCCCcccchhhhhhhcceEEEEEecCC--chhhH
Confidence 88888888876 9999999998766789999999997 99999987533222222222223456665544211 12457
Q ss_pred HHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 324 PSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
.++++++.++++++.+++.+.|+++++.++++.+.++...|+++++
T Consensus 295 ~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~ 340 (340)
T TIGR00692 295 YTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL 340 (340)
T ss_pred HHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 7889999999987655567999999999999998877644888764
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=277.91 Aligned_cols=313 Identities=26% Similarity=0.370 Sum_probs=256.8
Q ss_pred eeEEEEecCCC----CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCC
Q 017460 13 CKAAVAWGAGQ----PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEF 78 (371)
Q Consensus 13 ~~a~~~~~~~~----~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~ 78 (371)
|||+++++++. ++++.+.+.|.+.++||+||+.++++|++|++.+.|..+. ++|+|+++|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 78999988883 5888888888899999999999999999999988875431 599999999999999
Q ss_pred CCCCEEEeee-cCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 79 NEGEHVLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 79 ~~Gd~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
++||+|++.+ ..+|+.|++|..+++++|...... |+. .+ |+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------------g~~~~~~~~~~~~~~~lp~ 139 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFT--GYT-VD------------------GGYAEYMVADERFAYPIPE 139 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCcccc--ccc-cC------------------CceEEEEEecchhEEECCC
Confidence 9999998765 467999999999999999866542 221 12 4899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
+++..+++.+++++.+||+++ +.++++++++|||+|+|++|+++++++++.|+ +|+++++++++++.++++|++.+++
T Consensus 140 ~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 217 (329)
T cd08298 140 DYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGD 217 (329)
T ss_pred CCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEec
Confidence 999999999999999999998 88999999999999999999999999999999 9999999999999999999988887
Q ss_pred CCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCC
Q 017460 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGW 317 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 317 (371)
.+ .. .+.++|+++++.+....++.++++++++ |+++.+|.... .....+...+..+..+.++....
T Consensus 218 ~~--~~---------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~- 283 (329)
T cd08298 218 SD--DL---------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHMS-DIPAFDYELLWGEKTIRSVANLT- 283 (329)
T ss_pred cC--cc---------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCCC-CCCccchhhhhCceEEEEecCCC-
Confidence 64 21 2238999999877666899999999997 99999875321 11111222223456666554322
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
...+..+++++.++.+++ . .++|+++++.+|++.+.+++.. |+++
T Consensus 284 --~~~~~~~~~l~~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 284 --RQDGEEFLKLAAEIPIKP--E-VETYPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred --HHHHHHHHHHHHcCCCCc--e-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence 245788888898988765 2 4889999999999999988777 7663
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=278.43 Aligned_cols=297 Identities=21% Similarity=0.251 Sum_probs=235.8
Q ss_pred eeeEEEEecC--CCC----eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC--CCC-----eEEEEEeeCCCCCCC
Q 017460 12 TCKAAVAWGA--GQP----LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--WPQ-----CCRIVESVGPGVTEF 78 (371)
Q Consensus 12 ~~~a~~~~~~--~~~----l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~--~~~-----~~G~V~~~G~~v~~~ 78 (371)
+|||+++.++ +.+ +++.+.+.|+|++|||+|||.+++||+.|.....+. .+. ++|+|++ .++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~~~~~p~v~G~e~~G~V~~---~~~~~ 78 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKRLNEGDTMIGTQVAKVIES---KNSKF 78 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhcccccCCCCCcEecceEEEEEec---CCCCC
Confidence 6899999873 332 889999999999999999999999998876533221 121 6999985 44679
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC---ceEEC
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG---CAVKV 155 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~---~~~~~ 155 (371)
++||||+.. ++|++|+.++++ .++++
T Consensus 79 ~~Gd~V~~~---------------------------------------------------~~~~~~~~~~~~~~~~~~~i 107 (329)
T cd08294 79 PVGTIVVAS---------------------------------------------------FGWRTHTVSDGKDQPDLYKL 107 (329)
T ss_pred CCCCEEEee---------------------------------------------------CCeeeEEEECCccccceEEC
Confidence 999999864 268999999999 99999
Q ss_pred CCCCC-----hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 156 SSIAP-----LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 156 P~~~~-----~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
|++++ ...+++++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++++++++++.+++
T Consensus 108 P~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 108 PADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 99988 23334677899999999878889999999999985 9999999999999999 89999999999999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC--ee---e-cchhee
Q 017460 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP--EV---A-AHYGLF 303 (371)
Q Consensus 230 lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~--~~---~-~~~~~~ 303 (371)
+|++++++++ ..++.+.+++++++++|+|||++|+ ..+..++++++++ |+++.+|...... .. . +....+
T Consensus 187 ~Ga~~vi~~~--~~~~~~~v~~~~~~gvd~vld~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~ 262 (329)
T cd08294 187 LGFDAVFNYK--TVSLEEALKEAAPDGIDCYFDNVGG-EFSSTVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQETII 262 (329)
T ss_pred cCCCEEEeCC--CccHHHHHHHHCCCCcEEEEECCCH-HHHHHHHHhhccC-CEEEEEcchhccCCCCCCcCcccHHHHh
Confidence 9999999987 5678888888776689999999998 5789999999997 9999998532211 00 1 111223
Q ss_pred eeccEEEecccCCCCc--CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 304 LSGRTLKGSLFGGWKP--KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 304 ~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.+++++.++....+.. ...+.++++++.++++++.. ..+|+++++.+|++.+.+++.. |++|++
T Consensus 263 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~--~~~~~l~~~~~A~~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 263 FKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYRE--HVTEGFENMPQAFIGMLKGENTGKAIVKV 329 (329)
T ss_pred hhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCCc--ccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 4577787765433210 12356788888999887653 3579999999999999988877 998864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=278.20 Aligned_cols=311 Identities=27% Similarity=0.327 Sum_probs=249.8
Q ss_pred eeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC----C-----CeEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW----P-----QCCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~-~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~----~-----~~~G~V~~~G~~v~~~~~Gd 82 (371)
|||+++..++ +.+++.+.+.|+++++||+||+.++++|++|+..+.+.. + .++|+|+++|++++.+++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPMPHIPGAEFAGVVEEVGDHVKGVKKGD 80 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCCCCCCCeecccceeEEEEEECCCCCCCCCCC
Confidence 7899997766 458888888888999999999999999999988876532 1 16999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
+|++.+..+|+.|++|+.++.++|..... .|+. . .|+|++|++++++.++++|++++++
T Consensus 81 ~V~~~~~~~~~~c~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~~~~ 139 (325)
T cd08264 81 RVVVYNRVFDGTCDMCLSGNEMLCRNGGI--IGVV-S------------------NGGYAEYIVVPEKNLFKIPDSISDE 139 (325)
T ss_pred EEEECCCcCCCCChhhcCCCccccCccce--eecc-C------------------CCceeeEEEcCHHHceeCCCCCCHH
Confidence 99999989999999999999999986442 2221 1 2489999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
+++.+++++.+||+++. ..+++++++|+|+|+ |++|++++++|+++|+ +|++++ +.+.++++|++++++.+
T Consensus 140 ~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~-- 211 (325)
T cd08264 140 LAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYD-- 211 (325)
T ss_pred HhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecch--
Confidence 99999999999999984 488999999999996 9999999999999999 888875 23677889998888764
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCCCCcC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGGWKPK 320 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~ 320 (371)
+..+.+++++ +++|+|+|++|+ ..+..++++++++ |+++.+|.... ....++...+ .++.++.++..+. +
T Consensus 212 --~~~~~l~~~~-~~~d~vl~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~ 282 (325)
T cd08264 212 --EVEEKVKEIT-KMADVVINSLGS-SFWDLSLSVLGRG-GRLVTFGTLTG-GEVKLDLSDLYSKQISIIGSTGGT---R 282 (325)
T ss_pred --HHHHHHHHHh-CCCCEEEECCCH-HHHHHHHHhhccC-CEEEEEecCCC-CCCccCHHHHhhcCcEEEEccCCC---H
Confidence 2355666666 689999999997 4789999999997 99999986422 1122222222 3456676654432 3
Q ss_pred CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eE
Q 017460 321 TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RS 365 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kv 365 (371)
+.+.++++++...+ + .++++|+++++++|++.+.++... |+
T Consensus 283 ~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~a~~~~~~~~~~~kv 324 (325)
T cd08264 283 KELLELVKIAKDLK--V--KVWKTFKLEEAKEALKELFSKERDGRI 324 (325)
T ss_pred HHHHHHHHHHHcCC--c--eeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence 46778888885333 2 346899999999999998877655 43
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=275.57 Aligned_cols=318 Identities=27% Similarity=0.438 Sum_probs=258.2
Q ss_pred eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCCCCE
Q 017460 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEGEH 83 (371)
Q Consensus 14 ~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~Gd~ 83 (371)
||+++++++..+++.+.|.|.+.+++++|++.++++|++|+..+.|.++. ++|+|+++|++++.+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~ 80 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR 80 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence 68899998666999999999999999999999999999999888775321 59999999999999999999
Q ss_pred EEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 84 VLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 84 V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
|++.+. .+|+.|++|++++.++|.+....+ +. . .|+|++|+.++.++++++|++++..
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~------------------~g~~~~~~~v~~~~~~~~p~~~~~~ 139 (330)
T cd08245 81 VGVGWLVGSCGRCEYCRRGLENLCQKAVNTG--YT-T------------------QGGYAEYMVADAEYTVLLPDGLPLA 139 (330)
T ss_pred EEEccccCCCCCChhhhCcCcccCcCccccC--cc-c------------------CCccccEEEEcHHHeEECCCCCCHH
Confidence 988665 679999999999999999854321 10 1 1489999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
+++.+++.+.+||+++. ..++.++++|||+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.+++.. .
T Consensus 140 ~~~~l~~~~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~ 215 (330)
T cd08245 140 QAAPLLCAGITVYSALR-DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSG--A 215 (330)
T ss_pred HhhhhhhhHHHHHHHHH-hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccC--C
Confidence 99999989999999884 4789999999999988899999999999999 899999999999999999998888764 2
Q ss_pred chHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCCC
Q 017460 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTD 322 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~ 322 (371)
...... ..+++|+++|+++....+..++++++++ |+++.++..............+.++.++.++..+. ...
T Consensus 216 ~~~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 287 (330)
T cd08245 216 ELDEQA----AAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGG---RAD 287 (330)
T ss_pred cchHHh----ccCCCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCCCccccchHHHHhCCCEEEEeccCC---HHH
Confidence 233222 2247999999988767889999999997 99999986533211110111223466777765433 246
Q ss_pred HHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 323 LPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
+..+++++.++.+.+ . .+.|+++++.++|+.+.++... |+++
T Consensus 288 ~~~~~~ll~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 288 LQEALDFAAEGKVKP--M-IETFPLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred HHHHHHHHHcCCCcc--e-EEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence 778888888888764 2 3789999999999999888777 7664
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=275.62 Aligned_cols=284 Identities=19% Similarity=0.244 Sum_probs=226.5
Q ss_pred eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC--CC-----eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCcc
Q 017460 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW--PQ-----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQ 97 (371)
Q Consensus 25 l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~--~~-----~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~ 97 (371)
+++.+.|.|+|++|||+|||.|+++|+.+..-..+.. +. ++|+|++.|+ .|++||||+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~---------- 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMRVAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS---------- 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHhcccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe----------
Confidence 8899999999999999999999999997654322111 11 6999999874 59999999875
Q ss_pred ccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEEC----CCCCChhhh-hhcchhhh
Q 017460 98 CKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV----SSIAPLEKI-CLLSCGLS 172 (371)
Q Consensus 98 c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~----P~~~~~~~a-a~~~~~~~ 172 (371)
++|++|+.++.+++.++ |++++++++ +++++++.
T Consensus 86 -----------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~ 124 (325)
T TIGR02825 86 -----------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGL 124 (325)
T ss_pred -----------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHH
Confidence 25899999999888887 999999987 67888999
Q ss_pred hHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHH
Q 017460 173 AGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 173 ~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~ 251 (371)
|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++|++.++++++ ...+.+.++.
T Consensus 125 TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~ 202 (325)
T TIGR02825 125 TAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT-VKSLEETLKK 202 (325)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc-cccHHHHHHH
Confidence 99999878889999999999985 9999999999999999 8999999999999999999999998862 2356666666
Q ss_pred HhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC---Ceee---cchheeeeccEEEecccCCCCc---CCC
Q 017460 252 ITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK---PEVA---AHYGLFLSGRTLKGSLFGGWKP---KTD 322 (371)
Q Consensus 252 ~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~---~~~~---~~~~~~~~~~~i~g~~~~~~~~---~~~ 322 (371)
.+++++|+|||++|+. .+..++++++++ |+++.+|..... ...+ .....+.++.++.++....+.. .+.
T Consensus 203 ~~~~gvdvv~d~~G~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 280 (325)
T TIGR02825 203 ASPDGYDCYFDNVGGE-FSNTVIGQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKA 280 (325)
T ss_pred hCCCCeEEEEECCCHH-HHHHHHHHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHH
Confidence 6555899999999975 679999999997 999999865321 0111 1112233567777765432211 135
Q ss_pred HHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 323 LPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
+.++++++.++++++. +..+|+++++.+|++.+.+++.. |+|++
T Consensus 281 ~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvVv~ 325 (325)
T TIGR02825 281 LKELLKWVLEGKIQYK--EYVIEGFENMPAAFMGMLKGENLGKTIVK 325 (325)
T ss_pred HHHHHHHHHCCCcccc--eeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence 7788999999998765 34679999999999999988877 88863
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=274.38 Aligned_cols=289 Identities=17% Similarity=0.222 Sum_probs=222.5
Q ss_pred eEEEEeecCCCC-CCcEEEEEeeecCCcchhhhhc---C-----CCCC-----eEEEEEeeCCCCCCCCCCCEEEeeecC
Q 017460 25 LVVEEVEVNPPQ-PEEIRIKVVCTSLCRSDITAWE---T-----QWPQ-----CCRIVESVGPGVTEFNEGEHVLTVFIG 90 (371)
Q Consensus 25 l~~~~~~~p~~~-~~evlV~v~~~~i~~~D~~~~~---g-----~~~~-----~~G~V~~~G~~v~~~~~Gd~V~~~~~~ 90 (371)
+++.+.|.|++. ++||+|||.|+|||+.|..... | .++. ++|+|+++|++++.|++||+|+.+
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~--- 99 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF--- 99 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec---
Confidence 888999999874 9999999999999988853221 1 1111 699999999999999999999864
Q ss_pred CCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhh----hhh
Q 017460 91 ECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK----ICL 166 (371)
Q Consensus 91 ~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~----aa~ 166 (371)
. ++|+||++++++.++++|+++++.+ ++.
T Consensus 100 ----------------------------~-------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~ 132 (345)
T cd08293 100 ----------------------------N-------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGA 132 (345)
T ss_pred ----------------------------C-------------------CCceeEEEecHHHeEEcCccccccchhHHhhh
Confidence 1 2699999999999999999864332 445
Q ss_pred cchhhhhHHhHhhhhcCCCCC--CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEeCCCCCC
Q 017460 167 LSCGLSAGLGAAWNVADISKG--STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNN 242 (371)
Q Consensus 167 ~~~~~~~a~~~l~~~~~~~~~--~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi~~~~~~ 242 (371)
++.++.|||+++.+.+++++| ++|||+|+ |++|++++|+|+++|+.+|+++++++++++.+++ +|++++++++ .
T Consensus 133 ~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~--~ 210 (345)
T cd08293 133 VGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYK--T 210 (345)
T ss_pred cCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECC--C
Confidence 667899999998777788877 99999986 9999999999999998679999999999999876 9999999887 5
Q ss_pred chHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-C--ee--ecch--heee--eccEEEecc
Q 017460 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-P--EV--AAHY--GLFL--SGRTLKGSL 313 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~--~~--~~~~--~~~~--~~~~i~g~~ 313 (371)
.++.+.+++++++++|+|||++|+. .+..++++++++ |+++.+|..... . .. .+.. ..+. ++.++..+.
T Consensus 211 ~~~~~~i~~~~~~gvd~vid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (345)
T cd08293 211 DNVAERLRELCPEGVDVYFDNVGGE-ISDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFL 288 (345)
T ss_pred CCHHHHHHHHCCCCceEEEECCCcH-HHHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEE
Confidence 6788888888766999999999985 578999999997 999999853211 0 10 1100 1111 233333322
Q ss_pred cCCCCc--CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 314 FGGWKP--KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 314 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
...+.. ...+.++++++.++++++. +...|+++++.+|++.+.+++.. |+++++
T Consensus 289 ~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~ 345 (345)
T cd08293 289 VLNYKDKFEEAIAQLSQWVKEGKLKVK--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345 (345)
T ss_pred eeccHhHHHHHHHHHHHHHHCCCccce--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 211111 1235667788899988765 33567999999999999988877 999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=273.14 Aligned_cols=313 Identities=26% Similarity=0.310 Sum_probs=247.8
Q ss_pred eeEEEEecCCCC--eEEEE-eecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-------------------------C-
Q 017460 13 CKAAVAWGAGQP--LVVEE-VEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-------------------------Q- 63 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~-~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-------------------------~- 63 (371)
|||+++.+++.+ +++.+ .+.|.+.+++|+|||.++++|++|+.++.|.++ .
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 788998876643 56654 477788999999999999999999988876431 1
Q ss_pred ----eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCcc
Q 017460 64 ----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVS 139 (371)
Q Consensus 64 ----~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g 139 (371)
++|+|+++|++++.|++||+|++.+...|+.|..|. .|.. .|.. .+ |
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~-----~~~~-----~~~~-~~------------------g 131 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPA-----DIDY-----IGSE-RD------------------G 131 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccc-----cccc-----cCCC-CC------------------c
Confidence 699999999999999999999998888888876642 1211 1110 11 4
Q ss_pred ceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc
Q 017460 140 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 140 ~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~ 218 (371)
+|++|+.++.+.++++|+++++.+++.+++++.+|++++ +..++++|++|||+|+ |++|++++++|+++|+ ++++++
T Consensus 132 ~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~ 209 (350)
T cd08274 132 GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVA 209 (350)
T ss_pred cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEe
Confidence 899999999999999999999999999999999999987 7788999999999997 9999999999999999 788887
Q ss_pred CChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeee
Q 017460 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297 (371)
Q Consensus 219 ~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~ 297 (371)
+++ +++.++++|++.+++.. ...+. . ...+.+ ++|++||++|+ ..+..++++++++ |+++.+|.... ....
T Consensus 210 ~~~-~~~~~~~~g~~~~~~~~--~~~~~-~-~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~ 281 (350)
T cd08274 210 GAA-KEEAVRALGADTVILRD--APLLA-D-AKALGGEPVDVVADVVGG-PLFPDLLRLLRPG-GRYVTAGAIAG-PVVE 281 (350)
T ss_pred Cch-hhHHHHhcCCeEEEeCC--CccHH-H-HHhhCCCCCcEEEecCCH-HHHHHHHHHhccC-CEEEEecccCC-cccc
Confidence 665 88888999997666553 22333 3 455666 99999999997 4789999999997 99999986533 1123
Q ss_pred cchhe-eeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 298 AHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 298 ~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
++... +.++.++.++.... ...+.++++++.++++.+ +++++|+++++.++|+.+..+... |+++.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 282 LDLRTLYLKDLTLFGSTLGT---REVFRRLVRYIEEGEIRP--VVAKTFPLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred CCHHHhhhcceEEEEeecCC---HHHHHHHHHHHHCCCccc--ccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 33222 34677888776532 346888999999998654 356889999999999999887776 888753
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=268.62 Aligned_cols=306 Identities=19% Similarity=0.233 Sum_probs=244.6
Q ss_pred eeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCC
Q 017460 12 TCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 12 ~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~ 79 (371)
+|||+.+.+++.+ +++.+++.|.+.++||+||+.++++|++|+.+..|.++. ++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 5899999887764 888899999999999999999999999999888775431 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|+.. ..+ .|+|++|+.++.+.++++|+++
T Consensus 81 ~Gd~V~~~-------------------------------~~~----------------~g~~~~~v~v~~~~~~~lp~~~ 113 (327)
T PRK10754 81 VGDRVVYA-------------------------------QSA----------------LGAYSSVHNVPADKAAILPDAI 113 (327)
T ss_pred CCCEEEEC-------------------------------CCC----------------CcceeeEEEcCHHHceeCCCCC
Confidence 99999854 111 1489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++++++.+++.+.+|+.++.+...+++|++|+|+| +|.+|++++++|+.+|+ +|+++++++++++.++++|++++++.
T Consensus 114 ~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 192 (327)
T PRK10754 114 SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINY 192 (327)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcC
Confidence 99999998889999999987778899999999997 59999999999999999 89999999999999999999888877
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-Ceeecchhe-----eeeccEEEe
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAHYGL-----FLSGRTLKG 311 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~-----~~~~~~i~g 311 (371)
+ ..++.+.+++++++ ++|++||++++ ..+...+++++++ |+++.+|..... ..+...... +.....+.+
T Consensus 193 ~--~~~~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (327)
T PRK10754 193 R--EENIVERVKEITGGKKVRVVYDSVGK-DTWEASLDCLQRR-GLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQG 268 (327)
T ss_pred C--CCcHHHHHHHHcCCCCeEEEEECCcH-HHHHHHHHHhccC-CEEEEEccCCCCCCCcCHHHHhccCceEEecceeec
Confidence 6 56788888988887 99999999987 4788899999997 999999865421 112211111 001111111
Q ss_pred cccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 312 SLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.......-...+..+++++.++.+++..+..++|+++++.++++.+.++... |++|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 327 (327)
T PRK10754 269 YITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 1100000001244578888999887654446899999999999999888877 999863
|
|
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=265.99 Aligned_cols=320 Identities=25% Similarity=0.374 Sum_probs=259.3
Q ss_pred eeEEEEecCC--CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAG--QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~--~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~ 79 (371)
|||++++..+ +.+++.+.+.|.++++|++|++.++++|++|+....|.++. ++|+|+++|++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 7999998665 34888888888899999999999999999999988775431 5999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|++.....|+.+.+|....+. ..|.. . .|+|++|+.++.+.++++|+++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~--------~~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~ 133 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPPTAEDEAS--------ALGGP-I------------------DGVLAEYVVLPEEGLVRAPDHL 133 (336)
T ss_pred CCCEEEEeccccccccccccccccc--------ccccc-c------------------CceeeeEEEecHHHeEECCCCC
Confidence 9999999877776655543222111 11111 1 2489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
+..+++.+++++.+|++++.+.+.+++|++|+|+|+|++|+++++++++.|+ +|++++.++++++.++++|++.+++.+
T Consensus 134 ~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~ 212 (336)
T cd08276 134 SFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYR 212 (336)
T ss_pred CHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCC
Confidence 9999999999999999998777889999999999889999999999999999 899999999999999999999888875
Q ss_pred CCC-chHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCC
Q 017460 240 DNN-EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGW 317 (371)
Q Consensus 240 ~~~-~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 317 (371)
. .++.+.+++++++ ++|++||+++. ..+..+++++++. |+++.+|..............+.++.++.++..+.
T Consensus 213 --~~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 287 (336)
T cd08276 213 --TTPDWGEEVLKLTGGRGVDHVVEVGGP-GTLAQSIKAVAPG-GVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGS- 287 (336)
T ss_pred --cccCHHHHHHHHcCCCCCcEEEECCCh-HHHHHHHHhhcCC-CEEEEEccCCCCccCcCHHHHhhcceEEEEEecCc-
Confidence 3 5688888888887 99999999986 4788999999996 99999987544211111222235688888876543
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
...+.++++++.++.+.+. .++.|+++++.++++.+.++... |+++++
T Consensus 288 --~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 336 (336)
T cd08276 288 --RAQFEAMNRAIEAHRIRPV--IDRVFPFEEAKEAYRYLESGSHFGKVVIRV 336 (336)
T ss_pred --HHHHHHHHHHHHcCCcccc--cCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 3468888888888776543 45889999999999999888776 888753
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=264.53 Aligned_cols=290 Identities=27% Similarity=0.409 Sum_probs=240.1
Q ss_pred eeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C-----eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q-----CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~-~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~-----~~G~V~~~G~~v~~~~~G 81 (371)
|||++.++++ +.+++++++.|.+.+++|+||+.++++|++|.+...|.+. . ++|+|+.+|++++.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 80 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG 80 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence 6889987755 3499999999999999999999999999999988877541 1 699999999999999999
Q ss_pred CEEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 82 EHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 82 d~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
|+|++.+. .+|+.|++|.++..+.|..... .|.. . .|+|++|++++.+.++++|++++
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~g~~~~~~~v~~~~~~~lp~~~~ 139 (306)
T cd08258 81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG--IGTQ-A------------------DGGFAEYVLVPEESLHELPENLS 139 (306)
T ss_pred CEEEEccCcCCCCCCcchhCcCcccCCCCce--eeec-C------------------CCceEEEEEcchHHeEECcCCCC
Confidence 99999874 7799999999999999986421 1211 1 24899999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc--CChhhHHHHHHcCCceEeCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD--TNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~lg~~~vi~~ 238 (371)
+++++ +...++++++++...++++++++|||.|+|.+|++++++|++.|+ +|+++. +++++.+.++++|++++ ++
T Consensus 140 ~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~~ 216 (306)
T cd08258 140 LEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-NG 216 (306)
T ss_pred HHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-CC
Confidence 99887 556888999998888889999999998889999999999999999 787763 34567888899999877 77
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~ 316 (371)
+ ..++.+.+.+++++ ++|++||++|+...+...+++++++ |+++.+|.... ....++... +.+++++.|++++.
T Consensus 217 ~--~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~ 292 (306)
T cd08258 217 G--EEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGP-LAASIDVERIIQKELSVIGSRSST 292 (306)
T ss_pred C--cCCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCC-CCcccCHHHHhhcCcEEEEEecCc
Confidence 6 56788888888876 9999999998766788999999997 99999998652 223333222 24799999998765
Q ss_pred CCcCCCHHHHHHHHHcC
Q 017460 317 WKPKTDLPSLVNRYLKK 333 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~ 333 (371)
+++++++++++++|
T Consensus 293 ---~~~~~~~~~~~~~~ 306 (306)
T cd08258 293 ---PASWETALRLLASG 306 (306)
T ss_pred ---hHhHHHHHHHHhcC
Confidence 45788888887764
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=264.41 Aligned_cols=302 Identities=20% Similarity=0.237 Sum_probs=246.4
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC--------C-----eEEEEEeeCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP--------Q-----CCRIVESVGPGVTE 77 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~--------~-----~~G~V~~~G~~v~~ 77 (371)
|||+++++++.+ +++.+.+.|.+.+++|+|++.++++|++|+....|..+ . ++|+|+++|++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 789999876643 77777777888999999999999999999988877432 1 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
+++||+|++.... .. |+|++|+.++.+.++++|+
T Consensus 81 ~~~Gd~V~~~~~~----------------------------~~------------------g~~~~~~~v~~~~~~~lp~ 114 (324)
T cd08244 81 AWLGRRVVAHTGR----------------------------AG------------------GGYAELAVADVDSLHPVPD 114 (324)
T ss_pred CCCCCEEEEccCC----------------------------CC------------------ceeeEEEEEchHHeEeCCC
Confidence 9999999986200 12 4899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
+++..+++.+++.+.+|+ ++.+..+++++++|+|+|+ |.+|++++++|+++|+ +|+++++++++.+.++++|++.++
T Consensus 115 ~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 192 (324)
T cd08244 115 GLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAV 192 (324)
T ss_pred CCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEE
Confidence 999999999999999995 5557888999999999985 9999999999999999 899999999999999999998888
Q ss_pred CCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-heeeeccEEEeccc
Q 017460 237 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-GLFLSGRTLKGSLF 314 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~ 314 (371)
+++ +.++.+.+.+++++ ++|+++|++|+. ....+++++++. |+++.+|...... ..++. ..+.++.++.++..
T Consensus 193 ~~~--~~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 267 (324)
T cd08244 193 DYT--RPDWPDQVREALGGGGVTVVLDGVGGA-IGRAALALLAPG-GRFLTYGWASGEW-TALDEDDARRRGVTVVGLLG 267 (324)
T ss_pred ecC--CccHHHHHHHHcCCCCceEEEECCChH-hHHHHHHHhccC-cEEEEEecCCCCC-CccCHHHHhhCCcEEEEeec
Confidence 876 56778888888877 899999999986 578999999996 9999998764322 23331 22345778777655
Q ss_pred CCCCc---CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 315 GGWKP---KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 315 ~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
..... .+.+.++++++.++++.. ++++.|+++++.+|++.+.++... |+++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 324 (324)
T cd08244 268 VQAERGGLRALEARALAEAAAGRLVP--VVGQTFPLERAAEAHAALEARSTVGKVLLLP 324 (324)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCccC--ccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence 43211 134666788888888654 356889999999999999988877 888764
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=268.89 Aligned_cols=302 Identities=24% Similarity=0.323 Sum_probs=245.8
Q ss_pred eeEEEEecCCCC---eEEEEeecCCCCC-CcEEEEEeeecCCcchhhhhcCCCC---------C------eEEEEEeeCC
Q 017460 13 CKAAVAWGAGQP---LVVEEVEVNPPQP-EEIRIKVVCTSLCRSDITAWETQWP---------Q------CCRIVESVGP 73 (371)
Q Consensus 13 ~~a~~~~~~~~~---l~~~~~~~p~~~~-~evlV~v~~~~i~~~D~~~~~g~~~---------~------~~G~V~~~G~ 73 (371)
|||+++.+++.+ +.+.+.|.|.+.+ ++|+||+.++++|++|+..+.|..+ + ++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 899999988875 8999999999887 9999999999999999988877531 1 6999999999
Q ss_pred CCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceE
Q 017460 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV 153 (371)
Q Consensus 74 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~ 153 (371)
++..+++||+|++.. .+ .|+|++|+.++.+.++
T Consensus 81 ~v~~~~~Gd~V~~~~-------------------------------~~----------------~g~~~~~~~v~~~~~~ 113 (341)
T cd08290 81 GVKSLKPGDWVIPLR-------------------------------PG----------------LGTWRTHAVVPADDLI 113 (341)
T ss_pred CCCCCCCCCEEEecC-------------------------------CC----------------CccchheEeccHHHeE
Confidence 999999999999762 11 1489999999999999
Q ss_pred ECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh----hhHHHHH
Q 017460 154 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----EKCEKAK 228 (371)
Q Consensus 154 ~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~----~~~~~~~ 228 (371)
++|++++.++++.+++++.+|++++.....++++++|||+|+ |++|++++++|+++|+ +++++.+++ ++++.++
T Consensus 114 ~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~ 192 (341)
T cd08290 114 KVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLK 192 (341)
T ss_pred eCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHH
Confidence 999999999999999999999999877778999999999986 9999999999999999 888887765 6788889
Q ss_pred HcCCceEeCCCCCCc---hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-heee
Q 017460 229 AFGVTEFLNPNDNNE---PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-GLFL 304 (371)
Q Consensus 229 ~lg~~~vi~~~~~~~---~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~ 304 (371)
++|++++++++ .. .+.+.++.++++++|++||++|+. .+...+++++++ |+++.+|..... ...+.. ..+.
T Consensus 193 ~~g~~~~~~~~--~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~ 267 (341)
T cd08290 193 ALGADHVLTEE--ELRSLLATELLKSAPGGRPKLALNCVGGK-SATELARLLSPG-GTMVTYGGMSGQ-PVTVPTSLLIF 267 (341)
T ss_pred hcCCCEEEeCc--ccccccHHHHHHHHcCCCceEEEECcCcH-hHHHHHHHhCCC-CEEEEEeccCCC-CcccCHHHHhh
Confidence 99999999875 33 677777777655899999999985 577889999997 999999864332 122222 2235
Q ss_pred eccEEEecccCCCCc--C-----CCHHHHHHHHHcCCCCCCcceeeee---cchhHHHHHHHHHcCCee-eEEEeC
Q 017460 305 SGRTLKGSLFGGWKP--K-----TDLPSLVNRYLKKEFMVDEFITHNL---LFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 305 ~~~~i~g~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
++.++.+.....+.. + ..+..+++++.++.+.+. ...++ +++++.++++.+.++... |+++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~ 341 (341)
T cd08290 268 KDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--PVEKVTDDPLEEFKDALANALKGGGGGKQVLVM 341 (341)
T ss_pred CCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--cccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence 688888776543221 0 246677888888887654 23556 999999999999888777 998864
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=262.01 Aligned_cols=303 Identities=19% Similarity=0.300 Sum_probs=245.8
Q ss_pred eeeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCC
Q 017460 12 TCKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEF 78 (371)
Q Consensus 12 ~~~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~ 78 (371)
||||+++.+.+. .+++.+.+.|.+.+++|+|||.++++|+.|+....|..+. ++|+|+++|++++.+
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 699999998775 3777788888899999999999999999999888764321 699999999999999
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
++||+|+.+. .+ |+|++|++++.+.++++|++
T Consensus 81 ~~Gd~V~~~~------------------------------~~------------------g~~~~~~~v~~~~~~~ip~~ 112 (334)
T PTZ00354 81 KEGDRVMALL------------------------------PG------------------GGYAEYAVAHKGHVMHIPQG 112 (334)
T ss_pred CCCCEEEEec------------------------------CC------------------CceeeEEEecHHHcEeCCCC
Confidence 9999998762 11 38999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
++..+++.+.+++.+|++++.+..++++|++|||+|+ |.+|++++++|+++|+ +++++++++++++.++++|++.+++
T Consensus 113 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 113 YTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIR 191 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence 9999999999999999999877788999999999985 9999999999999999 7777889999999999999988888
Q ss_pred CCCCCch-HHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeee-cchhee-eeccEEEecc
Q 017460 238 PNDNNEP-VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA-AHYGLF-LSGRTLKGSL 313 (371)
Q Consensus 238 ~~~~~~~-~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~-~~~~~i~g~~ 313 (371)
++ ..+ +.+.+++++++ ++|++||++++ ..+..++++++++ |+++.+|.... ..+. ++...+ .++.++.++.
T Consensus 192 ~~--~~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 266 (334)
T PTZ00354 192 YP--DEEGFAPKVKKLTGEKGVNLVLDCVGG-SYLSETAEVLAVD-GKWIVYGFMGG-AKVEKFNLLPLLRKRASIIFST 266 (334)
T ss_pred cC--ChhHHHHHHHHHhCCCCceEEEECCch-HHHHHHHHHhccC-CeEEEEecCCC-CcccccCHHHHHhhCCEEEeee
Confidence 75 333 77888888877 99999999986 5788999999997 99999986433 2211 222222 2355777765
Q ss_pred cCCCCcC-------CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 314 FGGWKPK-------TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 314 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
....... ..+.++++++.++.+.+. +.+.|+++++.++++.+.+++.. |+++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~ 329 (334)
T PTZ00354 267 LRSRSDEYKADLVASFEREVLPYMEEGEIKPI--VDRTYPLEEVAEAHTFLEQNKNIGKVVLTVN 329 (334)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHCCCccCc--cccEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence 4331110 123567778888876543 56889999999999999887766 9998764
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=263.99 Aligned_cols=291 Identities=25% Similarity=0.348 Sum_probs=218.8
Q ss_pred eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC------eEEEEEeeCCCC------------CCCCCCCEEEe
Q 017460 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ------CCRIVESVGPGV------------TEFNEGEHVLT 86 (371)
Q Consensus 25 l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~------~~G~V~~~G~~v------------~~~~~Gd~V~~ 86 (371)
....+.++|.+++++++|++.++++|+.|+.+..|.+.+ +.|+|...|+++ ..+..||++..
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 444678999999999999999999999999999886643 233343333333 33444444443
Q ss_pred eecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhh
Q 017460 87 VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL 166 (371)
Q Consensus 87 ~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~ 166 (371)
. .. .|+|+||.++++..++++|++++.++||+
T Consensus 100 ~-------------------------------~~-----------------~g~~aey~v~p~~~~~~~P~~l~~~~aa~ 131 (347)
T KOG1198|consen 100 F-------------------------------LS-----------------SGGLAEYVVVPEKLLVKIPESLSFEEAAA 131 (347)
T ss_pred c-------------------------------cC-----------------CCceeeEEEcchhhccCCCCccChhhhhc
Confidence 3 11 25899999999999999999999999999
Q ss_pred cchhhhhHHhHhhhhc------CCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 167 LSCGLSAGLGAAWNVA------DISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 167 ~~~~~~~a~~~l~~~~------~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++.++.|||.++.+.+ +.++|++|||+|+ |++|++|+|+|++.|+ ..+++.+++++.++++++|+++++|++
T Consensus 132 ~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~ 210 (347)
T KOG1198|consen 132 LPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYK 210 (347)
T ss_pred CchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCC
Confidence 9999999999999888 8999999999975 8999999999999996 556666899999999999999999998
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-Ceeecc-hheeee-----ccEEEec
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAH-YGLFLS-----GRTLKGS 312 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~-~~~~~~-----~~~i~g~ 312 (371)
++++.+.+++.++++||+||||+|+. .+...+.++..+ |+...++..... ...... .....+ ...+.+.
T Consensus 211 --~~~~~e~~kk~~~~~~DvVlD~vg~~-~~~~~~~~l~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (347)
T KOG1198|consen 211 --DENVVELIKKYTGKGVDVVLDCVGGS-TLTKSLSCLLKG-GGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGV 286 (347)
T ss_pred --CHHHHHHHHhhcCCCccEEEECCCCC-ccccchhhhccC-CceEEEEeccccccccccccchhhhhhhhheeeeeecc
Confidence 68999999998844999999999985 567778888886 764444433221 111111 000000 1111111
Q ss_pred cc---CCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 313 LF---GGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 313 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
.+ ......+.+..+.+++.++++ ++.+.++||++++.+|++.+..+... |+++++.
T Consensus 287 ~~~~~~~~~~~~~l~~l~~~ie~gki--kp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~ 346 (347)
T KOG1198|consen 287 NYRWLYFVPSAEYLKALVELIEKGKI--KPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKD 346 (347)
T ss_pred ceeeeeecCCHHHHHHHHHHHHcCcc--cCCcceeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence 10 011113457788999999965 44578999999999999999887777 9999875
|
|
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=263.95 Aligned_cols=299 Identities=16% Similarity=0.186 Sum_probs=233.8
Q ss_pred eEEEEecC---CCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCC
Q 017460 14 KAAVAWGA---GQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEF 78 (371)
Q Consensus 14 ~a~~~~~~---~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~ 78 (371)
||+++.++ +.+ +++.++|.|+++++||+|||+++++|++|+.++.|..+. ++|+|+++|++++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF 80 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 57777775 433 888889999999999999999999999999888765421 699999999999999
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
++||+|+.... .. . .|+|++|++++++.++++|++
T Consensus 81 ~~Gd~V~~~~~--------------------------~~-~------------------~g~~~~~~~v~~~~~~~ip~~ 115 (336)
T TIGR02817 81 KPGDEVWYAGD--------------------------ID-R------------------PGSNAEFHLVDERIVGHKPKS 115 (336)
T ss_pred CCCCEEEEcCC--------------------------CC-C------------------CCcccceEEEcHHHcccCCCC
Confidence 99999987510 00 1 248999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCC-----CCEEEEEcc-ChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHHcC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISK-----GSTVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFG 231 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~~~VlI~Ga-g~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg 231 (371)
+++++++.+++++.+||+++.+..++++ |++|||+|+ |++|++++|+|+++ |+ +|+++++++++.+.++++|
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g 194 (336)
T TIGR02817 116 LSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELG 194 (336)
T ss_pred CCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcC
Confidence 9999999999999999999877788877 999999985 99999999999998 99 9999999999999999999
Q ss_pred CceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEe
Q 017460 232 VTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKG 311 (371)
Q Consensus 232 ~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g 311 (371)
+++++++. . ++...+++..++++|+|+|++++...+...+++++++ |+++.++.. ..++..... .++.++..
T Consensus 195 ~~~~~~~~--~-~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-G~~v~~~~~---~~~~~~~~~-~~~~~~~~ 266 (336)
T TIGR02817 195 AHHVIDHS--K-PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQ-GRFALIDDP---AELDISPFK-RKSISLHW 266 (336)
T ss_pred CCEEEECC--C-CHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccC-CEEEEEccc---ccccchhhh-hcceEEEE
Confidence 99999864 2 5777777754448999999987656789999999997 999988532 122222111 12344443
Q ss_pred cccC--CCCcC-------CCHHHHHHHHHcCCCCCCcceeeee---cchhHHHHHHHHHcCCee-eEEEe
Q 017460 312 SLFG--GWKPK-------TDLPSLVNRYLKKEFMVDEFITHNL---LFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 312 ~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
..+. ....+ ..+.++++++.++.+++. +++.+ +++++.+|++.+.+++.. |++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 267 EFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTT--LAETFGTINAANLKRAHALIESGKARGKIVLE 334 (336)
T ss_pred EEeecccccchhhhhhhHHHHHHHHHHHHCCCeecc--chhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence 2221 10000 236778888889887643 23444 579999999999988777 87764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=262.99 Aligned_cols=301 Identities=24% Similarity=0.312 Sum_probs=243.4
Q ss_pred eeeEEEEecCCC----CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----------CeEEEEEeeCCCCC
Q 017460 12 TCKAAVAWGAGQ----PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----------QCCRIVESVGPGVT 76 (371)
Q Consensus 12 ~~~a~~~~~~~~----~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----------~~~G~V~~~G~~v~ 76 (371)
.|||+++.+++. ++++++++.|.+.++||+||+.++++|++|+....|.++ .++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 489999988765 489999999999999999999999999999988876532 16999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
.+++||+|++. .. |+|++|+.++.+.++++|
T Consensus 81 ~~~~Gd~V~~~-------------------------------~~------------------g~~~s~~~v~~~~~~~ip 111 (329)
T cd08250 81 DFKVGDAVATM-------------------------------SF------------------GAFAEYQVVPARHAVPVP 111 (329)
T ss_pred CCCCCCEEEEe-------------------------------cC------------------cceeEEEEechHHeEECC
Confidence 99999999986 22 379999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
++. .+++.+++++.+||+++.+..+++++++|+|+|+ |.+|++++++|+..|+ +|+++++++++.+.++++|++.+
T Consensus 112 ~~~--~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v 188 (329)
T cd08250 112 ELK--PEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRP 188 (329)
T ss_pred CCc--chhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceE
Confidence 973 4667788899999999877788999999999985 9999999999999999 89999999999999999999888
Q ss_pred eCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC---------eeecchheeeec
Q 017460 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP---------EVAAHYGLFLSG 306 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~---------~~~~~~~~~~~~ 306 (371)
++.+ ..++.+.+....++++|++||++|+ ..+..++++++++ |+++.+|...... ...+....+.++
T Consensus 189 ~~~~--~~~~~~~~~~~~~~~vd~v~~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (329)
T cd08250 189 INYK--TEDLGEVLKKEYPKGVDVVYESVGG-EMFDTCVDNLALK-GRLIVIGFISGYQSGTGPSPVKGATLPPKLLAKS 264 (329)
T ss_pred EeCC--CccHHHHHHHhcCCCCeEEEECCcH-HHHHHHHHHhccC-CeEEEEecccCCcccCcccccccccccHHHhhcC
Confidence 8765 4566667766654589999999997 5789999999996 9999998654310 011222333457
Q ss_pred cEEEecccCCCC--cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 307 RTLKGSLFGGWK--PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 307 ~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
.++.++.+..+. ....+.++++++.++.+.+.....+.|+++++++|++.+.+++.. |++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 329 (329)
T cd08250 265 ASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE 329 (329)
T ss_pred ceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence 888777543221 123467788888888876643334679999999999999988777 88764
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=257.52 Aligned_cols=301 Identities=19% Similarity=0.214 Sum_probs=233.2
Q ss_pred eeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~ 79 (371)
|||++++++++ ++++.+.|.|.+++++|+||+.++++|++|+..+.|.++ + ++|+|+++ +++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 79999999886 699999999999999999999999999999999887643 1 69999998 456899
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|+.... ..|+. .+ |+|++|+.++++.++++|+++
T Consensus 79 ~Gd~V~~~~~-----------------------~~g~~-~~------------------g~~~~~~~v~~~~~~~lp~~~ 116 (325)
T cd05280 79 EGDEVLVTGY-----------------------DLGMN-TD------------------GGFAEYVRVPADWVVPLPEGL 116 (325)
T ss_pred CCCEEEEccc-----------------------ccCCC-CC------------------ceeEEEEEEchhhEEECCCCC
Confidence 9999998621 01211 12 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhc--CCC-CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVA--DIS-KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~--~~~-~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
++++++.+++.+.+++.++.... ++. .+++|+|+|+ |.+|++++++|+++|+ +|+++++++++++.++++|++++
T Consensus 117 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 117 SLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEV 195 (325)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEE
Confidence 99999999999999999874433 335 3579999997 9999999999999999 89999999999999999999988
Q ss_pred eCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecc
Q 017460 236 LNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSL 313 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~ 313 (371)
++.+ .. ...+.+...+ ++|+|||++++ ..+..+++++++. |+++.+|...... ..+....+ .++.++.+..
T Consensus 196 ~~~~--~~--~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 268 (325)
T cd05280 196 LDRE--DL--LDESKKPLLKARWAGAIDTVGG-DVLANLLKQTKYG-GVVASCGNAAGPE-LTTTVLPFILRGVSLLGID 268 (325)
T ss_pred Ecch--hH--HHHHHHHhcCCCccEEEECCch-HHHHHHHHhhcCC-CEEEEEecCCCCc-cccccchheeeeeEEEEEE
Confidence 8764 21 2233344444 89999999998 4789999999997 9999998764321 12232222 4688888766
Q ss_pred cCCCCcCCCH----HHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 314 FGGWKPKTDL----PSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 314 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
...... ... ..+.+++..+. .+.+..+|++++++++++.+.+++.. |+++++
T Consensus 269 ~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~ 325 (325)
T cd05280 269 SVNCPM-ELRKQVWQKLATEWKPDL---LEIVVREISLEELPEAIDRLLAGKHRGRTVVKI 325 (325)
T ss_pred eecCch-hHHHHHHHHHHHHHhcCC---ccceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence 543221 122 22333333442 22356899999999999999988877 988864
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=257.06 Aligned_cols=292 Identities=19% Similarity=0.240 Sum_probs=234.4
Q ss_pred eeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC------eEEEEEeeCCCCCCCCCCCEEE
Q 017460 13 CKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ------CCRIVESVGPGVTEFNEGEHVL 85 (371)
Q Consensus 13 ~~a~~~~~~~-~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~------~~G~V~~~G~~v~~~~~Gd~V~ 85 (371)
|||+++.+.+ ..+++.+.+.|.+.++||+||+.++++|+.|++...+...+ ++|+|+++|++++.|++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~ 80 (305)
T cd08270 1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAERPDGAVPGWDAAGVVERAAADGSGPAVGARVV 80 (305)
T ss_pred CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccCCCCCcccceeEEEEEEeCCCCCCCCCCCEEE
Confidence 6899997754 12667788899999999999999999999998876533221 6999999999999999999998
Q ss_pred eeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhh
Q 017460 86 TVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIC 165 (371)
Q Consensus 86 ~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa 165 (371)
... .. |+|++|+.++.+.++++|+++++++++
T Consensus 81 ~~~------------------------------~~------------------g~~~~~~~v~~~~~~~ip~~~~~~~a~ 112 (305)
T cd08270 81 GLG------------------------------AM------------------GAWAELVAVPTGWLAVLPDGVSFAQAA 112 (305)
T ss_pred Eec------------------------------CC------------------cceeeEEEEchHHeEECCCCCCHHHHH
Confidence 761 12 389999999999999999999999999
Q ss_pred hcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCch
Q 017460 166 LLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 244 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~ 244 (371)
.+++.+.+||+++...... +|++|+|+|+ |.+|++++++|++.|+ +|+.+++++++.+.++++|++.++... .
T Consensus 113 ~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~-- 186 (305)
T cd08270 113 TLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVGG--S-- 186 (305)
T ss_pred HhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecc--c--
Confidence 9999999999998555444 5999999987 9999999999999999 899999999999999999987665432 1
Q ss_pred HHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheee---eccEEEecccCC-CCcC
Q 017460 245 VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFL---SGRTLKGSLFGG-WKPK 320 (371)
Q Consensus 245 ~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~---~~~~i~g~~~~~-~~~~ 320 (371)
++.++++|+++|++|+. .+..++++++.+ |+++.+|.... ....++...+. ++.++.++.+.. ....
T Consensus 187 ------~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (305)
T cd08270 187 ------ELSGAPVDLVVDSVGGP-QLARALELLAPG-GTVVSVGSSSG-EPAVFNPAAFVGGGGGRRLYTFFLYDGEPLA 257 (305)
T ss_pred ------cccCCCceEEEECCCcH-HHHHHHHHhcCC-CEEEEEeccCC-CcccccHHHHhcccccceEEEEEccCHHHHH
Confidence 12234799999999985 789999999997 99999986542 22223332222 377787776542 1112
Q ss_pred CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 321 TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
..+..+++++.++++++. +.+++++++++++++.+.++... |+++.+
T Consensus 258 ~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 258 ADLARLLGLVAAGRLDPR--IGWRGSWTEIDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred HHHHHHHHHHHCCCccce--eccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 457778889999998754 56899999999999999888877 988864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08249 enoyl_reductase_like enoyl_reductase_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=261.22 Aligned_cols=306 Identities=25% Similarity=0.337 Sum_probs=240.0
Q ss_pred eeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC----CC-----eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW----PQ-----CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~-~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~----~~-----~~G~V~~~G~~v~~~~~Gd 82 (371)
|||++++.++ ..+++.+.+.|+++++||+||+.++++|++|+....+.+ +. ++|+|+.+|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFIPSYPAILGCDFAGTVVEVGSGVTRFKVGD 80 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccccCCCceeeeeeeEEEEEeCCCcCcCCCCC
Confidence 7899999884 338889999999999999999999999999998875443 11 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
+|+..+...|+ |.. . .|+|++|++++.+.++++|++++++
T Consensus 81 ~V~~~~~~~~~---------------------~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~~~ 120 (339)
T cd08249 81 RVAGFVHGGNP---------------------NDP-R------------------NGAFQEYVVADADLTAKIPDNISFE 120 (339)
T ss_pred EEEEEeccccC---------------------CCC-C------------------CCcccceEEechhheEECCCCCCHH
Confidence 99987533221 000 1 2489999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCC----------CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC
Q 017460 163 KICLLSCGLSAGLGAAWNVADI----------SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~----------~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg 231 (371)
+++.+++++.+||+++.+..++ .++++|||+|+ |.+|++++++|+++|+ +|+++. ++++++.++++|
T Consensus 121 ~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g 198 (339)
T cd08249 121 EAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLG 198 (339)
T ss_pred HceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcC
Confidence 9999999999999998655544 78999999996 8999999999999999 888876 568999999999
Q ss_pred CceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhcc--CCceEEEecCCCCCCeeecchheeeeccEE
Q 017460 232 VTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD--GWGLAVTLGVPKLKPEVAAHYGLFLSGRTL 309 (371)
Q Consensus 232 ~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i 309 (371)
++++++++ ..++.+.+++++++++|++||++|+...+..+++++++ + |+++.+|...... .+.... ....+
T Consensus 199 ~~~v~~~~--~~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~--~~~~~~--~~~~~ 271 (339)
T cd08249 199 ADAVFDYH--DPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEET--EPRKGV--KVKFV 271 (339)
T ss_pred CCEEEECC--CchHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccc--cCCCCc--eEEEE
Confidence 99999886 56788888887766899999999975578999999999 8 9999998664322 111111 11111
Q ss_pred EecccCC------CCcCCCHHHHHHHHHcCCCCCCcceeeeec--chhHHHHHHHHHcCC-ee-eEEEeC
Q 017460 310 KGSLFGG------WKPKTDLPSLVNRYLKKEFMVDEFITHNLL--FEDINQAFNLMKEGK-CL-RSVIHM 369 (371)
Q Consensus 310 ~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~a~~~~~~~~-~~-kvvi~~ 369 (371)
....+.. ......+..+++++.++++.+.+. ..++ ++++.+||+.+..++ .. |+++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~ 339 (339)
T cd08249 272 LGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPV--RVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL 339 (339)
T ss_pred EeeeecccccccccchHHHHHHHHHHHHcCCccCCCc--eecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence 1111110 000134667888888998876533 5566 999999999999888 66 999864
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=256.98 Aligned_cols=288 Identities=20% Similarity=0.307 Sum_probs=239.8
Q ss_pred eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----------CeEEEEEeeCCCCCCCCCCCEEEeeecCCCC
Q 017460 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----------QCCRIVESVGPGVTEFNEGEHVLTVFIGECK 93 (371)
Q Consensus 25 l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----------~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~ 93 (371)
+++.+.+.|.+.+++|+||+.++++|+.|..++.|.+. .++|+|+.+|++++.+++||+|++.+
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~----- 88 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG----- 88 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC-----
Confidence 66677888889999999999999999999988876542 16999999999999999999999862
Q ss_pred CCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhhh
Q 017460 94 TCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA 173 (371)
Q Consensus 94 ~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~ 173 (371)
.. |+|++|+.++...++++|++++..+++.+++.+.+
T Consensus 89 -------------------------~~------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~t 125 (323)
T cd05282 89 -------------------------GE------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLT 125 (323)
T ss_pred -------------------------CC------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHHH
Confidence 02 37999999999999999999999999999889999
Q ss_pred HHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHH
Q 017460 174 GLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 174 a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~ 252 (371)
|++++.+...+.++++|||+|+ |.+|++++++|+++|+ +++++.+++++++.++++|++.+++++ ...+...+.++
T Consensus 126 a~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~ 202 (323)
T cd05282 126 AWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSS--PEDLAQRVKEA 202 (323)
T ss_pred HHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEeccc--chhHHHHHHHH
Confidence 9999877778899999999986 8999999999999999 899999999999999999999999886 55788888888
Q ss_pred hCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheee-eccEEEecccCCCCc-------CCCH
Q 017460 253 TDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFL-SGRTLKGSLFGGWKP-------KTDL 323 (371)
Q Consensus 253 ~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~-------~~~~ 323 (371)
+++ ++|++||++|+. .....+++++++ |+++.+|..... ...++...+. ++.++.+.....+.. ...+
T Consensus 203 ~~~~~~d~vl~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (323)
T cd05282 203 TGGAGARLALDAVGGE-SATRLARSLRPG-GTLVNYGLLSGE-PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETF 279 (323)
T ss_pred hcCCCceEEEECCCCH-HHHHHHHhhCCC-CEEEEEccCCCC-CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHH
Confidence 887 999999999985 567889999996 999999876442 2233333333 678888776554321 1246
Q ss_pred HHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 324 PSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
.++++++.++.+.+. ++++|+++++.++|+.+.++... |++++
T Consensus 280 ~~~~~~l~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 323 (323)
T cd05282 280 AEVIKLVEAGVLTTP--VGAKFPLEDFEEAVAAAEQPGRGGKVLLT 323 (323)
T ss_pred HHHHHHHhCCCcccC--ccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence 677888888887643 46889999999999999888776 87763
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=251.25 Aligned_cols=291 Identities=25% Similarity=0.390 Sum_probs=234.3
Q ss_pred cCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhh-cCCC----C--C------eEEEEEeeCCCCCCCCCCCEEEe
Q 017460 20 GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAW-ETQW----P--Q------CCRIVESVGPGVTEFNEGEHVLT 86 (371)
Q Consensus 20 ~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~-~g~~----~--~------~~G~V~~~G~~v~~~~~Gd~V~~ 86 (371)
+.++ +++.+++.|++.++||+||+.++++|++|+..+ .|.. + + ++|+|+++|++++.+++||+|+.
T Consensus 3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 81 (312)
T cd08269 3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG 81 (312)
T ss_pred CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence 4444 999999999999999999999999999999887 6643 1 1 59999999999999999999998
Q ss_pred eecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhh
Q 017460 87 VFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL 166 (371)
Q Consensus 87 ~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~ 166 (371)
. .. |+|++|+.++++.++++|+++ ..++.
T Consensus 82 ~-------------------------------~~------------------g~~~~~~~v~~~~~~~lP~~~--~~~~~ 110 (312)
T cd08269 82 L-------------------------------SG------------------GAFAEYDLADADHAVPLPSLL--DGQAF 110 (312)
T ss_pred e-------------------------------cC------------------CcceeeEEEchhheEECCCch--hhhHH
Confidence 6 22 379999999999999999998 23333
Q ss_pred cchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHH
Q 017460 167 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ 246 (371)
Q Consensus 167 ~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~ 246 (371)
...+++++++++. .++++++++|||+|+|.+|++++++|+++|++.|+++.+++++.++++++|++.+++.+ ...+.
T Consensus 111 ~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~ 187 (312)
T cd08269 111 PGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDD--SEAIV 187 (312)
T ss_pred hhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCC--CcCHH
Confidence 2257889999874 88899999999998899999999999999993399999999999999999998888865 56788
Q ss_pred HHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-heeeeccEEEecccCCCC-cCCCH
Q 017460 247 QVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-GLFLSGRTLKGSLFGGWK-PKTDL 323 (371)
Q Consensus 247 ~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~-~~~~~ 323 (371)
+.+.+++++ ++|+++|++|....+..++++++++ |+++.+|.... ....++. ....++.++.++...... ....+
T Consensus 188 ~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-g~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (312)
T cd08269 188 ERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQD-GPRPVPFQTWNWKGIDLINAVERDPRIGLEGM 265 (312)
T ss_pred HHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCC-CCcccCHHHHhhcCCEEEEecccCccchhhHH
Confidence 889888887 9999999998766789999999997 99999986542 2222222 122356666655432211 12568
Q ss_pred HHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCe--eeEEE
Q 017460 324 PSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC--LRSVI 367 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~--~kvvi 367 (371)
.++++++.++.+.+...++++|+++++.++++.+.+++. .|+++
T Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 266 REAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI 311 (312)
T ss_pred HHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence 889999999988765445688999999999999988864 38876
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=239.55 Aligned_cols=285 Identities=20% Similarity=0.249 Sum_probs=230.3
Q ss_pred eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC--------------eEEEEEeeCCCCCCCCCCCEEEeeecC
Q 017460 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ--------------CCRIVESVGPGVTEFNEGEHVLTVFIG 90 (371)
Q Consensus 25 l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~--------------~~G~V~~~G~~v~~~~~Gd~V~~~~~~ 90 (371)
|++++.+.|+|+++|||+|++|.++++. ++.+-...+. .+|+|++ |+...|++||.|+...
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPy-mRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~--S~~~~f~~GD~V~~~~-- 101 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPY-MRGRMSDAPSYAPPVELGEVMVGGTVAKVVA--SNHPGFQPGDIVVGVS-- 101 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHH-HeecccCCcccCCCcCCCceeECCeeEEEEe--cCCCCCCCCCEEEecc--
Confidence 9999999999999999999999999973 2222222211 3777777 6778899999999762
Q ss_pred CCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC---CChhhhhhc
Q 017460 91 ECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI---APLEKICLL 167 (371)
Q Consensus 91 ~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~---~~~~~aa~~ 167 (371)
+|++|..++.+.+.|++.+ ++... ..+
T Consensus 102 -------------------------------------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~L-gvL 131 (340)
T COG2130 102 -------------------------------------------------GWQEYAISDGEGLRKLDPSPAPLSAYL-GVL 131 (340)
T ss_pred -------------------------------------------------cceEEEeechhhceecCCCCCCcchHH-hhc
Confidence 6999999999999999755 23222 234
Q ss_pred chhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEeCCCCCCchH
Q 017460 168 SCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPV 245 (371)
Q Consensus 168 ~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi~~~~~~~~~ 245 (371)
..+..|||.+|.+.+++++|++|+|-|| |++|..+.|+||..|+ +|+.+..+++|.+++.+ +|.+..+|++ .+++
T Consensus 132 GmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk--~~d~ 208 (340)
T COG2130 132 GMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYK--AEDF 208 (340)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecC--cccH
Confidence 5588999999999999999999999985 9999999999999999 99999999999999977 9999999999 6799
Q ss_pred HHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC--Ceeecch----heeeeccEEEecccCC-CC
Q 017460 246 QQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK--PEVAAHY----GLFLSGRTLKGSLFGG-WK 318 (371)
Q Consensus 246 ~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~--~~~~~~~----~~~~~~~~i~g~~~~~-~~ 318 (371)
.+.+.+.+..|+|+.||++|++ .++..+..|+.. +|++.||..+.. ...+..+ ..+.+.+++.|+-... +.
T Consensus 209 ~~~L~~a~P~GIDvyfeNVGg~-v~DAv~~~ln~~-aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~ 286 (340)
T COG2130 209 AQALKEACPKGIDVYFENVGGE-VLDAVLPLLNLF-ARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYD 286 (340)
T ss_pred HHHHHHHCCCCeEEEEEcCCch-HHHHHHHhhccc-cceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhh
Confidence 9999999999999999999995 899999999995 999999975432 1111111 1112367888886633 22
Q ss_pred cC--CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 319 PK--TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 319 ~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
.+ +..+++..|+.+|+++.++. -+=.||++++||.-|.+++.+ |+|+++.+
T Consensus 287 ~~~~e~~~~l~~wv~~GKi~~~et--i~dGlEnaP~Af~gLl~G~N~GK~vvKv~~ 340 (340)
T COG2130 287 QRFPEALRELGGWVKEGKIQYRET--IVDGLENAPEAFIGLLSGKNFGKLVVKVAD 340 (340)
T ss_pred hhhHHHHHHHHHHHHcCceeeEee--ehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence 21 34567888999999998863 345899999999999999988 99998753
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=250.86 Aligned_cols=301 Identities=23% Similarity=0.307 Sum_probs=239.1
Q ss_pred eeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCC
Q 017460 13 CKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 13 ~~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~ 80 (371)
||++++...+. .+++.+.+.|.++++||+||+.++++|++|+..+.|..+. ++|+|+++|. ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 68899977664 3677788888889999999999999999999988775421 6999999995 57999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
||+|+++.... |.. . .|+|++|+.+++..++++|++++
T Consensus 79 Gd~V~~~~~~~-----------------------~~~-~------------------~g~~~~~~~~~~~~~~~ip~~~~ 116 (320)
T cd08243 79 GQRVATAMGGM-----------------------GRT-F------------------DGSYAEYTLVPNEQVYAIDSDLS 116 (320)
T ss_pred CCEEEEecCCC-----------------------CCC-C------------------CcccceEEEcCHHHcEeCCCCCC
Confidence 99999873100 000 1 14899999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
.++++.+++++.+|++++.+...+++|++|||+|+ |.+|++++++|++.|+ +|+++++++++++.++++|++++++.
T Consensus 117 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~- 194 (320)
T cd08243 117 WAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID- 194 (320)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-
Confidence 99999999999999999877778999999999986 9999999999999999 89999999999999999999887754
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCee----ecchheeeeccEEEecccC
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEV----AAHYGLFLSGRTLKGSLFG 315 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~----~~~~~~~~~~~~i~g~~~~ 315 (371)
..++.+.++++ +.++|+++|++++ ..+..++++++++ |+++.+|........ ......+.+++++.++...
T Consensus 195 --~~~~~~~i~~~-~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (320)
T cd08243 195 --DGAIAEQLRAA-PGGFDKVLELVGT-ATLKDSLRHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSG 269 (320)
T ss_pred --CccHHHHHHHh-CCCceEEEECCCh-HHHHHHHHHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecchh
Confidence 33677778877 4499999999997 4789999999996 999999864322111 1111112346677666543
Q ss_pred CCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 316 GWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
... ...+..+++++.++.+.+. .++.|+++++.+|++.+.++... |+++
T Consensus 270 ~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~a~~~~~~~~~~~kvvv 319 (320)
T cd08243 270 DVP-QTPLQELFDFVAAGHLDIP--PSKVFTFDEIVEAHAYMESNRAFGKVVV 319 (320)
T ss_pred hhh-HHHHHHHHHHHHCCceecc--cccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence 221 2346778888888887653 45889999999999999888776 7775
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=250.73 Aligned_cols=304 Identities=17% Similarity=0.194 Sum_probs=230.0
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhc--CCC----CC-----eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--TQW----PQ-----CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~--g~~----~~-----~~G~V~~~G~~v~~~~ 79 (371)
|||+++.+++.+ +++++.|.|.+.++||+||+.++++|++|..... +.. +. ++|+|++.| ++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 799999887764 8889999999999999999999999999986654 221 11 699999954 56799
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|+..++. .|.. . .|+|++|+.++++.++++|+++
T Consensus 79 ~Gd~V~~~~~~-----------------------~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~ 116 (326)
T cd08289 79 PGDEVIVTSYD-----------------------LGVS-H------------------HGGYSEYARVPAEWVVPLPKGL 116 (326)
T ss_pred CCCEEEEcccc-----------------------cCCC-C------------------CCcceeEEEEcHHHeEECCCCC
Confidence 99999986320 1110 1 2489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhh--cC-CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 160 PLEKICLLSCGLSAGLGAAWNV--AD-ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~--~~-~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
++++++.+++.+.+|+.++... .. ...+++|||+|+ |.+|++++++|+++|+ +|+++++++++++.++++|++.+
T Consensus 117 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v 195 (326)
T cd08289 117 TLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEV 195 (326)
T ss_pred CHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEE
Confidence 9999999999999998886432 23 344789999987 9999999999999999 89999999999999999999888
Q ss_pred eCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEeccc
Q 017460 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLF 314 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~ 314 (371)
++.+ +. ..+.+++++++++|+|||++|+ ..+..++++++++ |+++.+|.... ...+.....+ .++.++.++..
T Consensus 196 ~~~~--~~-~~~~~~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 269 (326)
T cd08289 196 IPRE--EL-QEESIKPLEKQRWAGAVDPVGG-KTLAYLLSTLQYG-GSVAVSGLTGG-GEVETTVFPFILRGVNLLGIDS 269 (326)
T ss_pred Ecch--hH-HHHHHHhhccCCcCEEEECCcH-HHHHHHHHHhhcC-CEEEEEeecCC-CCCCcchhhhhhccceEEEEEe
Confidence 8875 32 3455666654489999999998 5789999999996 99999987633 2222222222 46888887643
Q ss_pred CCCCcCCCHHHHHHHHHcCCCC---CCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 315 GGWKPKTDLPSLVNRYLKKEFM---VDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.... ......++..+.. .+. ....++++|+++++.+||+.+.+++.. |+++++
T Consensus 270 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 270 VECP-MELRRRIWRRLAT-DLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred EecC-chHHHHHHHHHHh-hcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence 2110 1122333333332 222 122357899999999999999988887 888764
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=249.40 Aligned_cols=301 Identities=19% Similarity=0.210 Sum_probs=231.4
Q ss_pred eEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------C-----eEEEEEeeCCCCCCCCC
Q 017460 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------Q-----CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 14 ~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------~-----~~G~V~~~G~~v~~~~~ 80 (371)
||++++..+.+ +++++.|.|.+.+++|+||+.++++|++|+..+.|.++ . ++|+|+. ++++.|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 68888777764 68899999999999999999999999999998887541 1 6999988 56778999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
||+|++..+. .|.. . .|+|++|+.++++.++++|++++
T Consensus 79 Gd~V~~~~~~-----------------------~~~~-~------------------~g~~~~~~~~~~~~~~~iP~~~~ 116 (323)
T TIGR02823 79 GDEVIVTGYG-----------------------LGVS-H------------------DGGYSQYARVPADWLVPLPEGLS 116 (323)
T ss_pred CCEEEEccCC-----------------------CCCC-C------------------CccceEEEEEchhheEECCCCCC
Confidence 9999976311 0110 1 24899999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhh--hhcCCCCCC-EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 161 LEKICLLSCGLSAGLGAAW--NVADISKGS-TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~--~~~~~~~~~-~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
.++++.+++.+.+|+.++. ....+.+++ +|||+|+ |.+|++++++|+++|+ +++++++++++++.++++|++.++
T Consensus 117 ~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 117 LREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVI 195 (323)
T ss_pred HHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEE
Confidence 9999999989999987763 234488898 9999996 9999999999999999 888888889999999999998888
Q ss_pred CCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccC
Q 017460 237 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFG 315 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~ 315 (371)
+.+ +... .++.+.++++|+++|++|+. .+..++++++++ |+++.+|.... ...+.+...+ .++.++.+....
T Consensus 196 ~~~--~~~~--~~~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 268 (323)
T TIGR02823 196 DRE--DLSP--PGKPLEKERWAGAVDTVGGH-TLANVLAQLKYG-GAVAACGLAGG-PDLPTTVLPFILRGVSLLGIDSV 268 (323)
T ss_pred ccc--cHHH--HHHHhcCCCceEEEECccHH-HHHHHHHHhCCC-CEEEEEcccCC-CCccccHHHHhhcceEEEEEecc
Confidence 764 2222 45555555799999999975 688999999997 99999987643 2222222222 467888776543
Q ss_pred CCCcC---CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 316 GWKPK---TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 316 ~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
..... ..+..+.+++..+.+.. . .+.|+++++++||+.+.+++.. |++++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~~ 323 (323)
T TIGR02823 269 YCPMALREAAWQRLATDLKPRNLES--I-TREITLEELPEALEQILAGQHRGRTVVDV 323 (323)
T ss_pred ccCchhHHHHHHHHHHHhhcCCCcC--c-eeeecHHHHHHHHHHHhCCCccceEEEeC
Confidence 21110 12334455555665432 2 4689999999999999988877 888763
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >cd08252 AL_MDR Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=250.73 Aligned_cols=303 Identities=18% Similarity=0.157 Sum_probs=240.8
Q ss_pred eeEEEEecCCCC-----eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCC
Q 017460 13 CKAAVAWGAGQP-----LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 13 ~~a~~~~~~~~~-----l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~ 77 (371)
|||+++++++.+ +++.+++.|++.+++|+||+.++++|++|+..+.|..+ + ++|+|+++|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 689999888763 66667888889999999999999999999988776543 1 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
+++||+|+...... . .|+|++|+.++.+.++++|+
T Consensus 81 ~~~Gd~V~~~~~~~---------------------------~------------------~g~~~~~~~v~~~~~~~ip~ 115 (336)
T cd08252 81 FKVGDEVYYAGDIT---------------------------R------------------PGSNAEYQLVDERIVGHKPK 115 (336)
T ss_pred CCCCCEEEEcCCCC---------------------------C------------------CccceEEEEEchHHeeeCCC
Confidence 99999998751000 1 14899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCC-----CCEEEEEcc-ChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHHc
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISK-----GSTVVIFGL-GTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~~~VlI~Ga-g~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~l 230 (371)
+++.++++.+++.+.+||+++.+.+.+.+ +++|+|+|+ |++|++++++|+++| + +|+++++++++++.++++
T Consensus 116 ~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~ 194 (336)
T cd08252 116 SLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKEL 194 (336)
T ss_pred CCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhc
Confidence 99999999999999999999877788877 999999985 999999999999999 7 999999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEE
Q 017460 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLK 310 (371)
Q Consensus 231 g~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~ 310 (371)
|++.+++++ . ++.+.++...++++|++||++++...+..++++++.+ |+++.+|... ..++.... +.++.++.
T Consensus 195 g~~~~~~~~--~-~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~--~~~~~~~~-~~~~~~~~ 267 (336)
T cd08252 195 GADHVINHH--Q-DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQ-GHICLIVDPQ--EPLDLGPL-KSKSASFH 267 (336)
T ss_pred CCcEEEeCC--c-cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCC-CEEEEecCCC--Ccccchhh-hcccceEE
Confidence 998888875 2 5666666443338999999999766889999999997 9999998652 22222221 13567776
Q ss_pred ecccCCCC--c-------CCCHHHHHHHHHcCCCCCCcc-eeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 311 GSLFGGWK--P-------KTDLPSLVNRYLKKEFMVDEF-ITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 311 g~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
+..+.... . ...+.++++++.++.+.+... ....++++++.+|++.+.++... |++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 336 (336)
T cd08252 268 WEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE 336 (336)
T ss_pred EEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence 65433211 0 123667888888998775321 12458999999999999988877 88764
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=241.23 Aligned_cols=299 Identities=25% Similarity=0.302 Sum_probs=240.4
Q ss_pred eEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C----eEEEEEeeCCCCCCCCCCC
Q 017460 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q----CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 14 ~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~----~~G~V~~~G~~v~~~~~Gd 82 (371)
+|+.+...+.+ +.+.+.+.|.+.+++|+|+|.++++|++|+....|.++ . ++|+|+.+|++++.+++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPLPFVLGVEGAGVVEAVGPGVTGFKVGD 80 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCCCCCccCCcceeEEEEEECCCCCCCCCCC
Confidence 45666555543 66777777788999999999999999999988876542 1 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccC-CCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS-DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~-~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
+|++. . . |+|++|+.++.+.++++|++++.
T Consensus 81 ~V~~~-------------------------------~~~------------------g~~~~~~~~~~~~~~~~p~~~~~ 111 (320)
T cd05286 81 RVAYA-------------------------------GPP------------------GAYAEYRVVPASRLVKLPDGISD 111 (320)
T ss_pred EEEEe-------------------------------cCC------------------CceeEEEEecHHHceeCCCCCCH
Confidence 99976 2 2 37999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
.+++.+++.+.++++++.+..++.+|++|||+|+ |++|++++++++.+|+ +|+++++++++.+.++++|++.+++..
T Consensus 112 ~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~- 189 (320)
T cd05286 112 ETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYR- 189 (320)
T ss_pred HHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCC-
Confidence 9999998899999999877788999999999995 9999999999999999 899999999999999999998888775
Q ss_pred CCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCCCC
Q 017460 241 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGGWK 318 (371)
Q Consensus 241 ~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~ 318 (371)
...+.+.++.++.+ ++|++++++++ ..+..++++++++ |+++.+|..... ...++...+ .++.++.+.....+.
T Consensus 190 -~~~~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (320)
T cd05286 190 -DEDFVERVREITGGRGVDVVYDGVGK-DTFEGSLDSLRPR-GTLVSFGNASGP-VPPFDLLRLSKGSLFLTRPSLFHYI 265 (320)
T ss_pred -chhHHHHHHHHcCCCCeeEEEECCCc-HhHHHHHHhhccC-cEEEEEecCCCC-CCccCHHHHHhcCcEEEEEehhhhc
Confidence 56788888888877 99999999997 4788999999997 999999865432 111222222 356666544332221
Q ss_pred cC-----CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 319 PK-----TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 319 ~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.. ..+.++++++.++.+.+. .++.|+++++.++|+.+.++... |+++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~ 320 (320)
T cd05286 266 ATREELLARAAELFDAVASGKLKVE--IGKRYPLADAAQAHRDLESRKTTGKLLLIP 320 (320)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 11 224457778888876654 45889999999999999888777 888753
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=243.94 Aligned_cols=301 Identities=22% Similarity=0.251 Sum_probs=242.2
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~ 79 (371)
|||+++++.+.+ +++++.+.|.+.+++|+|++.++++|++|+.++.|... + ++|+|+++|+++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 799999887764 78888888889999999999999999999988776532 1 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|+++.. |+.+. .|+|++|+.++.++++++|+++
T Consensus 81 ~Gd~V~~~~~-------------------------~~~~~------------------~g~~~~~~~v~~~~~~~~p~~~ 117 (326)
T cd08272 81 VGDEVYGCAG-------------------------GLGGL------------------QGSLAEYAVVDARLLALKPANL 117 (326)
T ss_pred CCCEEEEccC-------------------------CcCCC------------------CCceeEEEEecHHHcccCCCCC
Confidence 9999998620 00001 2489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++.+++.+++.+.+|++++.+..+++++++++|+|+ |.+|++++++++..|+ +|++++++ ++.+.++++|++.+++.
T Consensus 118 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~ 195 (326)
T cd08272 118 SMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYY 195 (326)
T ss_pred CHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEec
Confidence 999999999999999999878889999999999985 9999999999999999 89998888 88899999999888877
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCC-
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGG- 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~- 316 (371)
. .. +.+.+++++.+ ++|+++|++++. .+..++.++++. |+++.++... .. .+.... .++.++.+.....
T Consensus 196 ~--~~-~~~~~~~~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~-g~~v~~~~~~-~~--~~~~~~-~~~~~~~~~~~~~~ 266 (326)
T cd08272 196 R--ET-VVEYVAEHTGGRGFDVVFDTVGGE-TLDASFEAVALY-GRVVSILGGA-TH--DLAPLS-FRNATYSGVFTLLP 266 (326)
T ss_pred c--hh-HHHHHHHhcCCCCCcEEEECCChH-HHHHHHHHhccC-CEEEEEecCC-cc--chhhHh-hhcceEEEEEcccc
Confidence 5 44 77888888887 899999999984 688899999996 9999997653 11 222222 3466666554321
Q ss_pred -CC------cCCCHHHHHHHHHcCCCCCCccee-eeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 317 -WK------PKTDLPSLVNRYLKKEFMVDEFIT-HNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 317 -~~------~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.. ....+..+++++.++.+.. +++ +.|+++++.++++.+.++... |+++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 326 (326)
T cd08272 267 LLTGEGRAHHGEILREAARLVERGQLRP--LLDPRTFPLEEAAAAHARLESGSARGKIVIDV 326 (326)
T ss_pred cccccchhhHHHHHHHHHHHHHCCCccc--ccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence 10 0134566777787887653 334 889999999999999887766 888764
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-31 Score=242.21 Aligned_cols=306 Identities=22% Similarity=0.319 Sum_probs=242.7
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~ 79 (371)
||++++..++.+ +.+.+.|.|.+.+++|+|++.++++|++|+..+.|.++. ++|+|+++|+++..|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 688888776543 888899999999999999999999999999888764321 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|+..... ..+. .|++++|+.++.+.++++|+++
T Consensus 81 ~Gd~v~~~~~~-------------------------~~~~------------------~g~~~~~~~~~~~~~~~ip~~~ 117 (325)
T cd08253 81 VGDRVWLTNLG-------------------------WGRR------------------QGTAAEYVVVPADQLVPLPDGV 117 (325)
T ss_pred CCCEEEEeccc-------------------------cCCC------------------CcceeeEEEecHHHcEeCCCCC
Confidence 99999987310 0001 2489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+..+++.+++++.+|++++.+..++.+|++|+|+|+ |.+|+++++++++.|+ +|+++++++++.+.++++|++.+++.
T Consensus 118 ~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 196 (325)
T cd08253 118 SFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNY 196 (325)
T ss_pred CHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence 999999999999999999877789999999999985 9999999999999999 89999999999999999999888877
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGW 317 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 317 (371)
+ ..++.+.+.+++.+ ++|++++++++. .+...+++++.. |+++.++.......+++.. .+.++.++.+......
T Consensus 197 ~--~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 271 (325)
T cd08253 197 R--AEDLADRILAATAGQGVDVIIEVLANV-NLAKDLDVLAPG-GRIVVYGSGGLRGTIPINP-LMAKEASIRGVLLYTA 271 (325)
T ss_pred C--CcCHHHHHHHHcCCCceEEEEECCchH-HHHHHHHhhCCC-CEEEEEeecCCcCCCChhH-HHhcCceEEeeehhhc
Confidence 6 55677788887776 999999999875 678889999996 9999998754222222222 1234666665543221
Q ss_pred Cc---CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 318 KP---KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 318 ~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.. ...+..+.+++..+.+.+. .++.|+++++.++++.+.++... |+++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 325 (325)
T cd08253 272 TPEERAAAAEAIAAGLADGALRPV--IAREYPLEEAAAAHEAVESGGAIGKVVLDP 325 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCCccCc--cccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 10 1224445566667765443 45889999999999999888777 888753
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-31 Score=241.44 Aligned_cols=299 Identities=25% Similarity=0.354 Sum_probs=243.1
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------C-----eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------Q-----CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------~-----~~G~V~~~G~~v~~~~ 79 (371)
|||+++.+.+.+ +++.+.+.|.+.+++|+||+.++++|++|+....|.++ . ++|+|+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 799999875543 77888888888999999999999999999988876542 1 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|++.. .+ |+|++|+.++.+.++++|+++
T Consensus 81 ~Gd~V~~~~------------------------------~~------------------g~~~~~~~~~~~~~~~~p~~~ 112 (323)
T cd05276 81 VGDRVCALL------------------------------AG------------------GGYAEYVVVPAGQLLPVPEGL 112 (323)
T ss_pred CCCEEEEec------------------------------CC------------------CceeEEEEcCHHHhccCCCCC
Confidence 999999762 11 379999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++.+++.+..++.++++++.+.+.+.++++|+|+|+ |++|++++++++..|+ +|+++++++++.+.++++|++.+++.
T Consensus 113 ~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 191 (323)
T cd05276 113 SLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINY 191 (323)
T ss_pred CHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeC
Confidence 999999999999999999877788999999999996 8999999999999999 89999999999999999999888877
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~ 316 (371)
. ..++.+.+...+.+ ++|+++|++|+. .+...+.+++++ |+++.+|...... .......+ .++.++.++....
T Consensus 192 ~--~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~~~~-g~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 266 (323)
T cd05276 192 R--TEDFAEEVKEATGGRGVDVILDMVGGD-YLARNLRALAPD-GRLVLIGLLGGAK-AELDLAPLLRKRLTLTGSTLRS 266 (323)
T ss_pred C--chhHHHHHHHHhCCCCeEEEEECCchH-HHHHHHHhhccC-CEEEEEecCCCCC-CCCchHHHHHhCCeEEEeeccc
Confidence 5 55677888887776 899999999975 578889999996 9999998654321 22222222 4678888776544
Q ss_pred CCcC-------CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 317 WKPK-------TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 317 ~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
.... ..+.++++++.++++.+. .++.|++++++++++.+.++... |+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 323 (323)
T cd05276 267 RSLEEKAALAAAFREHVWPLFASGRIRPV--IDKVFPLEEAAEAHRRMESNEHIGKIVL 323 (323)
T ss_pred hhhhccHHHHHHHHHHHHHHHHCCCccCC--cceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 2111 124566777878876543 56899999999999999887766 7653
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=250.16 Aligned_cols=301 Identities=25% Similarity=0.302 Sum_probs=230.0
Q ss_pred eeEEEEecCCCC---eEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcCCC-----------------C--------C
Q 017460 13 CKAAVAWGAGQP---LVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQW-----------------P--------Q 63 (371)
Q Consensus 13 ~~a~~~~~~~~~---l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~~-----------------~--------~ 63 (371)
|||+++++++++ +++.+.+.|.| .++||+||++++++|++|+.++.|.. . .
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 789999888875 88899999999 49999999999999999998877631 1 1
Q ss_pred eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceee
Q 017460 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 143 (371)
Q Consensus 64 ~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~ 143 (371)
++|+|+++|++++.+++||+|++.+..+ . .|+|++
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~~---------------------------~------------------~g~~~~ 115 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPPW---------------------------S------------------QGTHAE 115 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCCC---------------------------C------------------Ccccee
Confidence 6999999999999999999999863110 1 248999
Q ss_pred EEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCC----CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc
Q 017460 144 YTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISK----GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 144 ~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~----~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~ 218 (371)
|+.++++.++++|++++..+++.+++++.+|++++.+.+.+.+ |++|+|+|+ |++|++++++|+++|+ +|+++.
T Consensus 116 ~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~ 194 (350)
T cd08248 116 YVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTTC 194 (350)
T ss_pred EEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence 9999999999999999999999999999999999866666654 999999985 9999999999999999 888886
Q ss_pred CChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC--ee
Q 017460 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP--EV 296 (371)
Q Consensus 219 ~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~--~~ 296 (371)
++ ++.+.++++|++.+++.. ..++.+.+... +++|++||++|+. .+..++++++++ |+++.+|...... ..
T Consensus 195 ~~-~~~~~~~~~g~~~~~~~~--~~~~~~~l~~~--~~vd~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~ 267 (350)
T cd08248 195 ST-DAIPLVKSLGADDVIDYN--NEDFEEELTER--GKFDVILDTVGGD-TEKWALKLLKKG-GTYVTLVSPLLKNTDKL 267 (350)
T ss_pred Cc-chHHHHHHhCCceEEECC--ChhHHHHHHhc--CCCCEEEECCChH-HHHHHHHHhccC-CEEEEecCCcccccccc
Confidence 54 678888999998888775 44555544321 3899999999986 789999999997 9999998543211 11
Q ss_pred ecchhee-----eeccEEEe----cc--cC-CCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-
Q 017460 297 AAHYGLF-----LSGRTLKG----SL--FG-GWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL- 363 (371)
Q Consensus 297 ~~~~~~~-----~~~~~i~g----~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~- 363 (371)
......+ .....+.. .. .. .......+.++++++.++.+.+. +++.|+++++.++|+.+.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~ 345 (350)
T cd08248 268 GLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPV--IDKVFPFEEVPEAYEKVESGHARG 345 (350)
T ss_pred cccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEecc--cceeecHHHHHHHHHHHhcCCCce
Confidence 1100000 00000000 00 00 01112457888999999986543 56899999999999999887766
Q ss_pred eEEEe
Q 017460 364 RSVIH 368 (371)
Q Consensus 364 kvvi~ 368 (371)
|++++
T Consensus 346 ~vv~~ 350 (350)
T cd08248 346 KTVIK 350 (350)
T ss_pred EEEeC
Confidence 77763
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=241.31 Aligned_cols=302 Identities=14% Similarity=0.160 Sum_probs=233.1
Q ss_pred eeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~ 79 (371)
|||+++++++. .+++++.|.|++++++|+||+.++++|++|+..+.|.++ + ++|+|++ ++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 78999998875 488999999999999999999999999999988876531 1 6999998 7778899
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|++.... .| .. . .|+|++|++++.+.++++|+++
T Consensus 79 ~Gd~V~~~~~~--------------~~---------~~-~------------------~g~~~~~~~v~~~~~~~lp~~~ 116 (324)
T cd08288 79 PGDRVVLTGWG--------------VG---------ER-H------------------WGGYAQRARVKADWLVPLPEGL 116 (324)
T ss_pred CCCEEEECCcc--------------CC---------CC-C------------------CCcceeEEEEchHHeeeCCCCC
Confidence 99999985210 00 00 1 2489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhh--hhcCCC-CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 160 PLEKICLLSCGLSAGLGAAW--NVADIS-KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~--~~~~~~-~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
+.++++.+++.+.+++.++. +..+.. ++++|||+|+ |++|++++|+|+++|+ +|++++.++++.+.++++|++++
T Consensus 117 ~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~ 195 (324)
T cd08288 117 SARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEI 195 (324)
T ss_pred CHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEE
Confidence 99999999989999987753 223445 5789999996 9999999999999999 89999999999999999999988
Q ss_pred eCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEeccc
Q 017460 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLF 314 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~ 314 (371)
++++ + +...++.++.+++|.++|++++. .+...+..++.+ |+++.+|.... .....+...+ .++.++.+.+.
T Consensus 196 ~~~~--~--~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~-g~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~ 268 (324)
T cd08288 196 IDRA--E--LSEPGRPLQKERWAGAVDTVGGH-TLANVLAQTRYG-GAVAACGLAGG-ADLPTTVMPFILRGVTLLGIDS 268 (324)
T ss_pred EEcc--h--hhHhhhhhccCcccEEEECCcHH-HHHHHHHHhcCC-CEEEEEEecCC-CCCCcchhhhhccccEEEEEEe
Confidence 8875 2 23355556555789999999973 577888889986 99999987532 1122222223 46888887653
Q ss_pred CCCCc---CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 315 GGWKP---KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 315 ~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
..... ...+..+++++..+.+.+ +.+.|+++++.+|++.+.+++.. |+++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~ 324 (324)
T cd08288 269 VMAPIERRRAAWARLARDLDPALLEA---LTREIPLADVPDAAEAILAGQVRGRVVVDV 324 (324)
T ss_pred ecccchhhHHHHHHHHHHHhcCCccc---cceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence 32211 123445666666776543 35899999999999999988877 888764
|
Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal |
| >cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=243.91 Aligned_cols=306 Identities=17% Similarity=0.233 Sum_probs=226.9
Q ss_pred eEEEEecCCCCeEEEEeecCCC---CCCcEEEEEeeecCCcchhhhhcCCC------CC-----eEEEEEeeCCCCC-CC
Q 017460 14 KAAVAWGAGQPLVVEEVEVNPP---QPEEIRIKVVCTSLCRSDITAWETQW------PQ-----CCRIVESVGPGVT-EF 78 (371)
Q Consensus 14 ~a~~~~~~~~~l~~~~~~~p~~---~~~evlV~v~~~~i~~~D~~~~~g~~------~~-----~~G~V~~~G~~v~-~~ 78 (371)
|++++.+++.+++++.++.|.| ++++|+||+.++++|++|+..+.+.. +. ++|+|+++|++++ .|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 6889999888888887777665 89999999999999999988765432 21 6999999999998 89
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC----ceEE
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG----CAVK 154 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~----~~~~ 154 (371)
++||+|++.....|+ . .|+|++|++++.. .+++
T Consensus 82 ~~Gd~V~~~~~~~~~-------------------------~------------------~g~~~~~~~v~~~~~~~~~~~ 118 (352)
T cd08247 82 KVGDEVCGIYPHPYG-------------------------G------------------QGTLSQYLLVDPKKDKKSITR 118 (352)
T ss_pred CCCCEEEEeecCCCC-------------------------C------------------CceeeEEEEEccccccceeEE
Confidence 999999987432211 1 2489999999987 7899
Q ss_pred CCCCCChhhhhhcchhhhhHHhHhhhhc-CCCCCCEEEEEcc-ChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcC
Q 017460 155 VSSIAPLEKICLLSCGLSAGLGAAWNVA-DISKGSTVVIFGL-GTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFG 231 (371)
Q Consensus 155 ~P~~~~~~~aa~~~~~~~~a~~~l~~~~-~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg 231 (371)
+|+++++.+++.+++.+.+||+++.+.. ++++|++|+|+|+ |.+|++++++|+.+|. +.++++. ++++.+.++++|
T Consensus 119 lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g 197 (352)
T cd08247 119 KPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLG 197 (352)
T ss_pred CCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhC
Confidence 9999999999999999999999986666 7999999999987 7999999999999854 3566665 456666889999
Q ss_pred CceEeCCCCCCch---HHHHHHH-HhCC-CccEEEEcCCChHHHHHHHHHhc---cCCceEEEecCCCCCCeee------
Q 017460 232 VTEFLNPNDNNEP---VQQVIKR-ITDG-GADYSFECIGDTGMITTALQSCC---DGWGLAVTLGVPKLKPEVA------ 297 (371)
Q Consensus 232 ~~~vi~~~~~~~~---~~~~v~~-~~~g-g~dvVid~~g~~~~l~~~~~~l~---~~~G~~v~~g~~~~~~~~~------ 297 (371)
++.+++.+ ..+ +...+.+ .+++ ++|++||++|+...+..++++++ ++ |+++.++.... ..+.
T Consensus 198 ~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~-~~~~~~~~~~ 273 (352)
T cd08247 198 ADHFIDYD--AHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYK-ANYKKDTFNS 273 (352)
T ss_pred CCEEEecC--CCcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCc-ccccchhhhh
Confidence 98888875 333 4444444 4435 99999999998557888999999 96 99998753221 1110
Q ss_pred -----cchheeeeccEEEecccCC--C-CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 298 -----AHYGLFLSGRTLKGSLFGG--W-KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 298 -----~~~~~~~~~~~i~g~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
.....+.++.++....+.. . .....+..+++++.++.+.+. ++++|+++++++||+.+++++.. |++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 351 (352)
T cd08247 274 WDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKPP--IDSVYPFEDYKEAFERLKSNRAKGKVVIK 351 (352)
T ss_pred ccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeEee--eccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence 0001111122221111100 0 001346778888888876533 56889999999999999988877 88876
Q ss_pred C
Q 017460 369 M 369 (371)
Q Consensus 369 ~ 369 (371)
+
T Consensus 352 ~ 352 (352)
T cd08247 352 V 352 (352)
T ss_pred C
Confidence 3
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=242.84 Aligned_cols=294 Identities=19% Similarity=0.193 Sum_probs=230.7
Q ss_pred eEEEEecCCC------CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC--------C-----CeEEEEEeeCCC
Q 017460 14 KAAVAWGAGQ------PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW--------P-----QCCRIVESVGPG 74 (371)
Q Consensus 14 ~a~~~~~~~~------~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~--------~-----~~~G~V~~~G~~ 74 (371)
||+.+...++ .+++++.|.|++.+++|+||+.++++|+.|.....+.. + .++|+|+++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~ 82 (329)
T cd05288 3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP 82 (329)
T ss_pred cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence 5666644331 28999999999999999999999999997754443321 1 169999999964
Q ss_pred CCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeC-CceE
Q 017460 75 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS-GCAV 153 (371)
Q Consensus 75 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~-~~~~ 153 (371)
.+++||+|+.. ++|++|+.++. +.++
T Consensus 83 --~~~~Gd~V~~~---------------------------------------------------~~~~~~~~v~~~~~~~ 109 (329)
T cd05288 83 --DFKVGDLVSGF---------------------------------------------------LGWQEYAVVDGASGLR 109 (329)
T ss_pred --CCCCCCEEecc---------------------------------------------------cceEEEEEecchhhcE
Confidence 79999999865 26999999999 9999
Q ss_pred ECCCCCC--hhhhhh-cchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 154 KVSSIAP--LEKICL-LSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 154 ~~P~~~~--~~~aa~-~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
++|++++ ..+++. +++++.+|++++.+...+.++++|||+| +|.+|++++++|+..|+ +|+++++++++.+.+++
T Consensus 110 ~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~ 188 (329)
T cd05288 110 KLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVE 188 (329)
T ss_pred ECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence 9999985 445545 7889999999987778899999999998 49999999999999999 89999999999999988
Q ss_pred -cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeee----c-chhee
Q 017460 230 -FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA----A-HYGLF 303 (371)
Q Consensus 230 -lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~----~-~~~~~ 303 (371)
+|++++++++ +.++.+.+.+++++++|++||++|+ ..+..++++++++ |+++.+|......... + ....+
T Consensus 189 ~~g~~~~~~~~--~~~~~~~v~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~ 264 (329)
T cd05288 189 ELGFDAAINYK--TPDLAEALKEAAPDGIDVYFDNVGG-EILDAALTLLNKG-GRIALCGAISQYNATEPPGPKNLGNII 264 (329)
T ss_pred hcCCceEEecC--ChhHHHHHHHhccCCceEEEEcchH-HHHHHHHHhcCCC-ceEEEEeeccCcccccccccccHHHHh
Confidence 9998888886 5567778887775589999999997 4789999999997 9999998654321111 0 12223
Q ss_pred eeccEEEecccCCCCc--CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 304 LSGRTLKGSLFGGWKP--KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 304 ~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
.++.++.++....... ...+.++++++.++.+.+.+. ..++++++.++++.+.+++.. |+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~~~l~~~~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 265 TKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRED--VVEGLENAPEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred hCcceEEeecchhhHHHHHHHHHHHHHHHHCCCcccccc--ccccHHHHHHHHHHHhcCCCccceeC
Confidence 4678887765543211 134667888888998876533 568999999999999887766 7663
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=239.95 Aligned_cols=304 Identities=24% Similarity=0.261 Sum_probs=238.6
Q ss_pred eeEEEEecCC--CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC---C-C------eEEEEEeeCCCCCCCCC
Q 017460 13 CKAAVAWGAG--QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW---P-Q------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 13 ~~a~~~~~~~--~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~---~-~------~~G~V~~~G~~v~~~~~ 80 (371)
|||+++.+++ +.+++.+.|.|++.+++|+||+.++++|++|+..+.+.. . + ++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 7999999988 359999999999999999999999999999998876543 1 1 69999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
||+|++.... . .. |+|++|+.++.+.++++|++++
T Consensus 81 Gd~V~~~~~~--------------------------~-~~------------------~~~~s~~~~~~~~~~~ip~~~~ 115 (325)
T cd08271 81 GDRVAYHASL--------------------------A-RG------------------GSFAEYTVVDARAVLPLPDSLS 115 (325)
T ss_pred CCEEEeccCC--------------------------C-CC------------------ccceeEEEeCHHHeEECCCCCC
Confidence 9999986210 0 11 3799999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
..+++.+.+++.+|++++.+.+++.+|++|+|+|+ |.+|+++++++++.|+ +|+++. ++++.+.++++|++.+++..
T Consensus 116 ~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~ 193 (325)
T cd08271 116 FEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYN 193 (325)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCC
Confidence 99999999999999999877788999999999997 7899999999999999 888876 67888888999998888776
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCe-eecchheeeeccEEEecccCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE-VAAHYGLFLSGRTLKGSLFGGW 317 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~i~g~~~~~~ 317 (371)
...+...+++++++ ++|++++++++. .....++++++. |+++.++....... ..+......++..+........
T Consensus 194 --~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (325)
T cd08271 194 --DEDVCERIKEITGGRGVDAVLDTVGGE-TAAALAPTLAFN-GHLVCIQGRPDASPDPPFTRALSVHEVALGAAHDHGD 269 (325)
T ss_pred --CccHHHHHHHHcCCCCCcEEEECCCcH-hHHHHHHhhccC-CEEEEEcCCCCCcchhHHhhcceEEEEEecccccccc
Confidence 55677888888777 899999999985 566789999996 99999875432110 0011111122333333221110
Q ss_pred -----CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 318 -----KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 318 -----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
..++.+.++++++.++.+.+. .++.|+++++.++++.+.++... |+++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~ 325 (325)
T cd08271 270 PAAWQDLRYAGEELLELLAAGKLEPL--VIEVLPFEQLPEALRALKDRHTRGKIVVTI 325 (325)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCeeec--cceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence 001234567788888886543 34889999999999999888777 888763
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-31 Score=236.40 Aligned_cols=258 Identities=30% Similarity=0.457 Sum_probs=211.4
Q ss_pred cEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcc
Q 017460 39 EIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE 107 (371)
Q Consensus 39 evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~ 107 (371)
||+|+|.++++|+.|+..+.|..+ + ++|+|+++|++++.|++||+|+..+..+|+.|.+|+. .|.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 689999999999999999887653 1 6999999999999999999999999999999999997 666
Q ss_pred cccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCC
Q 017460 108 VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKG 187 (371)
Q Consensus 108 ~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~ 187 (371)
..... +.. . .|+|++|+.++.+.++++|+++++++++.+++++.+|++++.....++++
T Consensus 77 ~~~~~--~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~ 135 (271)
T cd05188 77 GGGIL--GEG-L------------------DGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPG 135 (271)
T ss_pred CCCEe--ccc-c------------------CCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCC
Confidence 55432 111 1 25899999999999999999999999999989999999998766667999
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD 266 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~ 266 (371)
++|||+|+|++|++++++++..|. +|+++++++++.+.++++|++.+++.. ...+.+.+. .+.+ ++|++|++++.
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~-~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYK--EEDLEEELR-LTGGGGADVVIDAVGG 211 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCC--cCCHHHHHH-HhcCCCCCEEEECCCC
Confidence 999999986699999999999998 999999999999999999998888776 455666666 5555 89999999998
Q ss_pred hHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCCCHHHHHHH
Q 017460 267 TGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNR 329 (371)
Q Consensus 267 ~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~ 329 (371)
...+..++++++++ |+++.++..............+.+++++.++....+ .++++++++
T Consensus 212 ~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 270 (271)
T cd05188 212 PETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTR---EDFEEALDL 270 (271)
T ss_pred HHHHHHHHHhcccC-CEEEEEccCCCCCCcccHHHHHhcceEEEEeecCCH---HHHHHHHhh
Confidence 55788999999997 999999876543322223333456888888876542 345555543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-30 Score=237.75 Aligned_cols=295 Identities=21% Similarity=0.282 Sum_probs=229.5
Q ss_pred eEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCCC
Q 017460 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 14 ~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~~ 80 (371)
||+++...+.+ +++.+.+.|.+.+++|+|++.++++|++|+.++.|..+. ++|+|+.+|++++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 78888877654 888888999999999999999999999999888775421 69999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
||+|++.. .. |+|++|+.++.+.++++|++++
T Consensus 82 Gd~V~~~~------------------------------~~------------------g~~~~~~~~~~~~~~~~p~~~~ 113 (331)
T cd08273 82 GDRVAALT------------------------------RV------------------GGNAEYINLDAKYLVPVPEGVD 113 (331)
T ss_pred CCEEEEeC------------------------------CC------------------cceeeEEEechHHeEECCCCCC
Confidence 99999862 11 3799999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
..+++.+++++.+|++++.+.+++.++++|+|+|+ |.+|++++++|+..|+ +|++++. +++.+.++++|+.. ++.+
T Consensus 114 ~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~~ 190 (331)
T cd08273 114 AAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDYR 190 (331)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcCC
Confidence 99999999999999999877788999999999986 9999999999999999 8998887 88889999999754 4443
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecc---------------hheee
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH---------------YGLFL 304 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~---------------~~~~~ 304 (371)
..++... ...++++|+++|++++. .+..++++++.+ |+++.+|.........+. ...+.
T Consensus 191 --~~~~~~~--~~~~~~~d~vl~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (331)
T cd08273 191 --TKDWLPA--MLTPGGVDVVFDGVGGE-SYEESYAALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTG 264 (331)
T ss_pred --Ccchhhh--hccCCCceEEEECCchH-HHHHHHHHhcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcceecc
Confidence 3334333 33334899999999986 488999999996 999999876442221111 01111
Q ss_pred eccEEEecccCCC-C---cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 305 SGRTLKGSLFGGW-K---PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 305 ~~~~i~g~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
++.++........ . ..+.+..+++++.++.+.+. ++++|+++++.++++.+.++... |+++
T Consensus 265 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 265 RRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPK--IAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred ceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccCC--cceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 1223322222100 0 01356678888889887643 56889999999999999887776 7765
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=233.52 Aligned_cols=306 Identities=23% Similarity=0.323 Sum_probs=241.2
Q ss_pred eeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------C-----eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------Q-----CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------~-----~~G~V~~~G~~v~~~~ 79 (371)
|||+++.+.+. .+++.+.+.|.+.+++++|++.++++|++|+....|... . ++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 68888877554 377778888888999999999999999999988766532 1 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|+.++...+ . . .|+|++|+.++.+.++++|+++
T Consensus 81 ~Gd~V~~~~~~~~------------------------~-~------------------~g~~~~~~~~~~~~~~~~p~~~ 117 (328)
T cd08268 81 VGDRVSVIPAADL------------------------G-Q------------------YGTYAEYALVPAAAVVKLPDGL 117 (328)
T ss_pred CCCEEEecccccc------------------------C-C------------------CccceEEEEechHhcEeCCCCC
Confidence 9999998732100 0 1 1489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+..+++.+++++.++++++.....+.++++++|+|+ |.+|++++++++..|+ +++++++++++++.++++|++.+++.
T Consensus 118 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 196 (328)
T cd08268 118 SFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVT 196 (328)
T ss_pred CHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEec
Confidence 999999999999999999877788999999999986 9999999999999999 89999999999999999998888877
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh-eeeeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG-LFLSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~ 316 (371)
+ ...+...+.+.+.+ ++|++++++++ .....++++++++ |+++.+|..... ...+... .+.++.++.+..+..
T Consensus 197 ~--~~~~~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (328)
T cd08268 197 D--EEDLVAEVLRITGGKGVDVVFDPVGG-PQFAKLADALAPG-GTLVVYGALSGE-PTPFPLKAALKKSLTFRGYSLDE 271 (328)
T ss_pred C--CccHHHHHHHHhCCCCceEEEECCch-HhHHHHHHhhccC-CEEEEEEeCCCC-CCCCchHHHhhcCCEEEEEeccc
Confidence 5 55677778888777 89999999998 4688899999997 999999865431 1122222 234677777765432
Q ss_pred CCc-CCC----HHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 317 WKP-KTD----LPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 317 ~~~-~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
... ... +..+.+++.++.+... .+..|+++++.++++.+.++... |+++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 328 (328)
T cd08268 272 ITLDPEARRRAIAFILDGLASGALKPV--VDRVFPFDDIVEAHRYLESGQQIGKIVVTP 328 (328)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCCcCC--cccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 211 112 2334444556665543 45789999999999999887776 888763
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=232.98 Aligned_cols=301 Identities=24% Similarity=0.343 Sum_probs=243.0
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------C-----eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------Q-----CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------~-----~~G~V~~~G~~v~~~~ 79 (371)
|+|+.+...+.+ +.+.+.+.|.+++++++||+.++++|++|+..+.+.++ . ++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 678888776654 66777777778999999999999999999988876432 1 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|+... .+ |++++|+.++.+.++++|+++
T Consensus 81 ~Gd~V~~~~------------------------------~~------------------~~~~~~~~~~~~~~~~ip~~~ 112 (325)
T TIGR02824 81 VGDRVCALV------------------------------AG------------------GGYAEYVAVPAGQVLPVPEGL 112 (325)
T ss_pred CCCEEEEcc------------------------------CC------------------CcceeEEEecHHHcEeCCCCC
Confidence 999999761 11 379999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+..+++.+++++.++++++.+...++++++++|+|+ |.+|++++++++..|+ +|+++.+++++.+.++++|++.+++.
T Consensus 113 ~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 191 (325)
T TIGR02824 113 SLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINY 191 (325)
T ss_pred CHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEec
Confidence 999999999999999998778889999999999985 9999999999999999 89999999999998999998878776
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~ 316 (371)
. ..++.+.++...++ ++|++++++++. .+..++++++++ |+++.+|....... .++...+ .++.++.+.....
T Consensus 192 ~--~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 266 (325)
T TIGR02824 192 R--EEDFVEVVKAETGGKGVDVILDIVGGS-YLNRNIKALALD-GRIVQIGFQGGRKA-ELDLGPLLAKRLTITGSTLRA 266 (325)
T ss_pred C--chhHHHHHHHHcCCCCeEEEEECCchH-HHHHHHHhhccC-cEEEEEecCCCCcC-CCChHHHHhcCCEEEEEehhh
Confidence 5 55677888888776 899999999974 688899999996 99999986542111 2222222 5688888776543
Q ss_pred CCcC-------CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 317 WKPK-------TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 317 ~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.... ..+.++++++.++.+.+. .++.|+++++.++++.+.++... |+++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 325 (325)
T TIGR02824 267 RPVAEKAAIAAELREHVWPLLASGRVRPV--IDKVFPLEDAAQAHALMESGDHIGKIVLTV 325 (325)
T ss_pred cchhhhHHHHHHHHHHHHHHHHCCcccCc--cccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence 2111 123456677778876543 46889999999999999887766 888753
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >cd08251 polyketide_synthase polyketide synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=230.25 Aligned_cols=282 Identities=24% Similarity=0.376 Sum_probs=223.7
Q ss_pred cCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccC
Q 017460 32 VNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKS 100 (371)
Q Consensus 32 ~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~ 100 (371)
.|++.+++|+||+.++++|+.|+..+.|.++. ++|+|+++|++++.+++||+|++....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 57788999999999999999999888775321 699999999999999999999986210
Q ss_pred CCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhh
Q 017460 101 DKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180 (371)
Q Consensus 101 ~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~ 180 (371)
. .|+|++|+.++++.++++|++++.++++.++.++.+|++++ +
T Consensus 72 ------------------~------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~ 114 (303)
T cd08251 72 ------------------S------------------MGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-A 114 (303)
T ss_pred ------------------C------------------CcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-H
Confidence 1 14899999999999999999999999999999999999997 6
Q ss_pred hcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-Ccc
Q 017460 181 VADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GAD 258 (371)
Q Consensus 181 ~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~d 258 (371)
..++++|++|+|+| +|.+|++++++++++|+ +|+++++++++++.++++|++.+++.. ..++...+..++++ ++|
T Consensus 115 ~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~i~~~~~~~~~d 191 (303)
T cd08251 115 RAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYV--EEDFEEEIMRLTGGRGVD 191 (303)
T ss_pred hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCC--CccHHHHHHHHcCCCCce
Confidence 78899999999996 59999999999999999 899999999999999999999888876 56788888888877 999
Q ss_pred EEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCC---Cc---CCCHHHHHHHHHc
Q 017460 259 YSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGW---KP---KTDLPSLVNRYLK 332 (371)
Q Consensus 259 vVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~---~~---~~~~~~~~~~~~~ 332 (371)
+++|++++ ..+...++++++. |+++.+|.........+....+.++.++....+... .. .+.+.++++++.+
T Consensus 192 ~v~~~~~~-~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (303)
T cd08251 192 VVINTLSG-EAIQKGLNCLAPG-GRYVEIAMTALKSAPSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEE 269 (303)
T ss_pred EEEECCcH-HHHHHHHHHhccC-cEEEEEeccCCCccCccChhHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHC
Confidence 99999976 5788899999996 999998765322111122222222333222211110 00 1235667788888
Q ss_pred CCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 333 KEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 333 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
+.+++. .++.|+++++.++++.+.+++.. |+++
T Consensus 270 g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 270 GELRPT--VSRIFPFDDIGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred CCccCC--CceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 876543 45889999999999999887766 7663
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=228.48 Aligned_cols=299 Identities=26% Similarity=0.430 Sum_probs=240.6
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCC-CCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQ-PEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEF 78 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~-~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~ 78 (371)
|+|+++...+.+ +++.+.+ |.+. +++++|++.++++|++|+..+.|.+. + ++|+|+.+|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 688998754433 7777777 7665 59999999999999999988766532 1 699999999999999
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
++||+|+... .. |++++|+.++.+.++++|++
T Consensus 80 ~~G~~V~~~~------------------------------~~------------------~~~~~~~~~~~~~~~~ip~~ 111 (323)
T cd08241 80 KVGDRVVALT------------------------------GQ------------------GGFAEEVVVPAAAVFPLPDG 111 (323)
T ss_pred CCCCEEEEec------------------------------CC------------------ceeEEEEEcCHHHceeCCCC
Confidence 9999999872 02 37999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
++..+++.+..++.+|++++.+..+++++++|+|+|+ |.+|++++++++..|+ +|++++.++++.+.++++|++.+++
T Consensus 112 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 190 (323)
T cd08241 112 LSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVID 190 (323)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeee
Confidence 9999998888899999999866788999999999996 9999999999999999 8999999999999999999988887
Q ss_pred CCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCe-eecchheeeeccEEEecccC
Q 017460 238 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE-VAAHYGLFLSGRTLKGSLFG 315 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~i~g~~~~ 315 (371)
.. ..++.+.+...+++ ++|++++++|+ ..+..++++++++ |+++.+|....... +... ..+.++.++.+....
T Consensus 191 ~~--~~~~~~~i~~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 265 (323)
T cd08241 191 YR--DPDLRERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWG-GRLLVIGFASGEIPQIPAN-LLLLKNISVVGVYWG 265 (323)
T ss_pred cC--CccHHHHHHHHcCCCCcEEEEECccH-HHHHHHHHhhccC-CEEEEEccCCCCcCcCCHH-HHhhcCcEEEEEecc
Confidence 75 55788888888877 89999999997 4788899999997 99999986433211 1111 223457788777654
Q ss_pred CCCc------CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEe
Q 017460 316 GWKP------KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIH 368 (371)
Q Consensus 316 ~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~ 368 (371)
.+.. ...+.++++++.++.+.+ +.++.|+++++.++++.+.++... |++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~ 323 (323)
T cd08241 266 AYARREPELLRANLAELFDLLAEGKIRP--HVSAVFPLEQAAEALRALADRKATGKVVLT 323 (323)
T ss_pred cccchhHHHHHHHHHHHHHHHHCCCccc--ccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence 3321 124566788888887653 356889999999999998877766 77763
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=230.72 Aligned_cols=291 Identities=22% Similarity=0.310 Sum_probs=230.3
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC--------C-----eEEEEEeeCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP--------Q-----CCRIVESVGPGVTE 77 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~--------~-----~~G~V~~~G~~v~~ 77 (371)
|+|++++.++.. +++.+.+.|.+++++|+||+.++++|++|+..+.|... . ++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 789999877653 56777788888999999999999999999988877541 1 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
+++||+|+..+... .. |+|++|+.++...++++|+
T Consensus 81 ~~~G~~V~~~~~~~---------------------------~~------------------g~~~~~~~~~~~~~~~~p~ 115 (309)
T cd05289 81 FKVGDEVFGMTPFT---------------------------RG------------------GAYAEYVVVPADELALKPA 115 (309)
T ss_pred CCCCCEEEEccCCC---------------------------CC------------------CcceeEEEecHHHhccCCC
Confidence 99999999873100 12 3799999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
+++..+++.+++.+.++++++.+...+.++++|+|+|+ |.+|++++++++..|+ +|++++.++ +.+.++++|++.++
T Consensus 116 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~ 193 (309)
T cd05289 116 NLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVI 193 (309)
T ss_pred CCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEE
Confidence 99999999999899999999866667999999999996 9999999999999999 888888777 88888999988888
Q ss_pred CCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccC
Q 017460 237 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFG 315 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 315 (371)
+.+ ..++.+ .+.+ ++|+++|++++. ....++++++++ |+++.+|....... ..+.++.++....+.
T Consensus 194 ~~~--~~~~~~----~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~ 260 (309)
T cd05289 194 DYT--KGDFER----AAAPGGVDAVLDTVGGE-TLARSLALVKPG-GRLVSIAGPPPAEQ-----AAKRRGVRAGFVFVE 260 (309)
T ss_pred eCC--CCchhh----ccCCCCceEEEECCchH-HHHHHHHHHhcC-cEEEEEcCCCcchh-----hhhhccceEEEEEec
Confidence 765 333433 3344 899999999986 788999999997 99999986543111 112234444443321
Q ss_pred CCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 316 GWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
.. ...+.++++++.++.+.+ ++++.|+++++.++|+.+..+... |+++
T Consensus 261 ~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 309 (309)
T cd05289 261 PD--GEQLAELAELVEAGKLRP--VVDRVFPLEDAAEAHERLESGHARGKVVL 309 (309)
T ss_pred cc--HHHHHHHHHHHHCCCEEE--eeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence 11 346778888888887543 356899999999999998877666 6653
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=225.25 Aligned_cols=300 Identities=21% Similarity=0.331 Sum_probs=234.2
Q ss_pred eEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCCC
Q 017460 14 KAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 14 ~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~~ 80 (371)
||+++...+. .+.+.+.+.|++.+++|+||+.++++|++|+..+.|.++ + ++|+|+.+|+++..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 4566655543 377778888888999999999999999999988876542 1 69999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
||+|+... .. |+|++|+.++.+.++++|++++
T Consensus 81 G~~V~~~~------------------------------~~------------------~~~~~~~~~~~~~~~~ip~~~~ 112 (337)
T cd08275 81 GDRVMGLT------------------------------RF------------------GGYAEVVNVPADQVFPLPDGMS 112 (337)
T ss_pred CCEEEEec------------------------------CC------------------CeeeeEEEecHHHeEECCCCCC
Confidence 99999862 11 3799999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
..+++.+++++.++|+++.+..+++++++|+|+|+ |.+|++++++|+.+ +. .++.. ..+++.+.++++|++.+++.
T Consensus 113 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~ 190 (337)
T cd08275 113 FEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVIDY 190 (337)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEeeC
Confidence 99999999999999999877888999999999997 99999999999998 43 33322 34567888888999888877
Q ss_pred CCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC--Ceeec-------------c-hhe
Q 017460 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK--PEVAA-------------H-YGL 302 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~--~~~~~-------------~-~~~ 302 (371)
+ ..++.+.++..+++++|+++|++|+. .+..++++++++ |+++.+|..... ..... . ...
T Consensus 191 ~--~~~~~~~~~~~~~~~~d~v~~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
T cd08275 191 R--TQDYVEEVKKISPEGVDIVLDALGGE-DTRKSYDLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKL 266 (337)
T ss_pred C--CCcHHHHHHHHhCCCceEEEECCcHH-HHHHHHHhhccC-cEEEEEeecCCcCcccccccccccccccccccCHHHH
Confidence 6 56788888887755899999999975 678899999997 999999865431 11110 0 111
Q ss_pred eeeccEEEecccCCCCcC-----CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 303 FLSGRTLKGSLFGGWKPK-----TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 303 ~~~~~~i~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+.++.++.++.+...... ..+.++++++.++.+.+. .++.|++++++++++.+.++... |+++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 267 ISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPK--IDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred hhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCc--eeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 245777777654322111 125567777888876543 46889999999999999888777 888764
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=227.04 Aligned_cols=285 Identities=25% Similarity=0.296 Sum_probs=218.1
Q ss_pred EEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC--------CC-----eEEEEEeeCCCCCCCCCCCEEEeeecCCC
Q 017460 26 VVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW--------PQ-----CCRIVESVGPGVTEFNEGEHVLTVFIGEC 92 (371)
Q Consensus 26 ~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~--------~~-----~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~ 92 (371)
++.+.+.|++.+++|+|+++++++|++|+..+.|.. +. ++|+|+++|++++.+.+||+|+......
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~- 93 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK- 93 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCC-
Confidence 777889999999999999999999999998887754 11 6999999999999999999999873110
Q ss_pred CCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhh
Q 017460 93 KTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS 172 (371)
Q Consensus 93 ~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~ 172 (371)
. .|+|++|+.++.+.++++|++++..+++.+++++.
T Consensus 94 --------------------------~------------------~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 129 (319)
T cd08267 94 --------------------------G------------------GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGL 129 (319)
T ss_pred --------------------------C------------------CceeeEEEEechhheEECCCCCCHHHHHhhhhHHH
Confidence 0 13799999999999999999999999999999999
Q ss_pred hHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHH
Q 017460 173 AGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 173 ~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~ 251 (371)
+||+++.+...++++++|+|+|+ |.+|++++++|+..|+ +|++++++ ++.+.++++|++.+++.. ..++. +.
T Consensus 130 ~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~--~~~~~---~~ 202 (319)
T cd08267 130 TALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYT--TEDFV---AL 202 (319)
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCC--CCCcc---hh
Confidence 99999866667999999999996 9999999999999999 89988765 888888999998888765 33333 34
Q ss_pred HhCC-CccEEEEcCCCh-HHHHHHHHHhccCCceEEEecCCCCCCeeec---chheeeeccEEEecccCCCCcCCCHHHH
Q 017460 252 ITDG-GADYSFECIGDT-GMITTALQSCCDGWGLAVTLGVPKLKPEVAA---HYGLFLSGRTLKGSLFGGWKPKTDLPSL 326 (371)
Q Consensus 252 ~~~g-g~dvVid~~g~~-~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 326 (371)
.+.+ ++|+++|++++. ......+..++++ |+++.+|.......... ..........+....... . ...+.++
T Consensus 203 ~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 279 (319)
T cd08267 203 TAGGEKYDVIFDAVGNSPFSLYRASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKP-N-AEDLEQL 279 (319)
T ss_pred ccCCCCCcEEEECCCchHHHHHHhhhccCCC-CEEEEeccccccccccccccchhhccccceEEEEEecC-C-HHHHHHH
Confidence 4555 899999999852 2233444458896 99999987543222111 011111122222221111 1 3568888
Q ss_pred HHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 327 VNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 327 ~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
++++.++++.. +++++|+++++.++|+.+.++... |+++
T Consensus 280 ~~~l~~~~~~~--~~~~~~~~~~i~~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 280 AELVEEGKLKP--VIDSVYPLEDAPEAYRRLKSGRARGKVVI 319 (319)
T ss_pred HHHHHCCCeee--eeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence 88998888654 356899999999999999887766 6653
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05195 enoyl_red enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=220.68 Aligned_cols=274 Identities=21% Similarity=0.298 Sum_probs=220.0
Q ss_pred CcEEEEEeeecCCcchhhhhcCCC---CC-----eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccc
Q 017460 38 EEIRIKVVCTSLCRSDITAWETQW---PQ-----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVL 109 (371)
Q Consensus 38 ~evlV~v~~~~i~~~D~~~~~g~~---~~-----~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~ 109 (371)
+||+||+.++++|++|++...|.. +. ++|+|+++|++++.+++||+|++.
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~---------------------- 58 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLPGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGL---------------------- 58 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCCCCCCccceeeeEEEEeecCCccCCCCCCEEEEE----------------------
Confidence 589999999999999999888764 21 699999999999999999999986
Q ss_pred cccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCE
Q 017460 110 GLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGST 189 (371)
Q Consensus 110 ~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~ 189 (371)
.. |+|++|+.++.+.++++|++++..+++.+++++.+++.++.+...+++|++
T Consensus 59 ---------~~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~ 111 (293)
T cd05195 59 ---------AP------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGES 111 (293)
T ss_pred ---------ec------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCE
Confidence 22 379999999999999999999999999998999999999877788999999
Q ss_pred EEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC--CceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCC
Q 017460 190 VVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG--VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265 (371)
Q Consensus 190 VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg--~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g 265 (371)
|+|+| +|.+|++++++++..|+ +++++.+++++.+.++++| ++.+++.+ ..++.+.+++++.+ ++|+++|+++
T Consensus 112 vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~vi~~~~ 188 (293)
T cd05195 112 VLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSR--DLSFADGILRATGGRGVDVVLNSLS 188 (293)
T ss_pred EEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecC--chhHHHHHHHHhCCCCceEEEeCCC
Confidence 99997 59999999999999999 8999999999999998888 67788775 55788888888877 9999999999
Q ss_pred ChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC---c---CCCHHHHHHHHHcCCCCCCc
Q 017460 266 DTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK---P---KTDLPSLVNRYLKKEFMVDE 339 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~ 339 (371)
+. .+..++++++++ |+++.+|.........+....+.++.++....+..+. . ...+..+++++.++++.+
T Consensus 189 ~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 264 (293)
T cd05195 189 GE-LLRASWRCLAPF-GRFVEIGKRDILSNSKLGMRPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKP-- 264 (293)
T ss_pred ch-HHHHHHHhcccC-ceEEEeeccccccCCccchhhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCccc--
Confidence 86 789999999997 9999998654321111222222234444443222111 0 124567788888887653
Q ss_pred ceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 340 FITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 340 ~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
..++.|+++++.++++.+.++... |+++
T Consensus 265 ~~~~~~~~~~~~~a~~~~~~~~~~~~ivv 293 (293)
T cd05195 265 LPPTVVPSASEIDAFRLMQSGKHIGKVVL 293 (293)
T ss_pred CCCeeechhhHHHHHHHHhcCCCCceecC
Confidence 345789999999999999887766 6653
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase |
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=216.90 Aligned_cols=270 Identities=20% Similarity=0.338 Sum_probs=216.5
Q ss_pred EEEeeecCCcchhhhhcCCCCC-------eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCccccccccc
Q 017460 42 IKVVCTSLCRSDITAWETQWPQ-------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR 114 (371)
Q Consensus 42 V~v~~~~i~~~D~~~~~g~~~~-------~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~ 114 (371)
||+.++++|++|++.+.|.++. ++|+|+++|++++.+++||+|+..
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~--------------------------- 54 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLPGEAVLGGECAGVVTRVGPGVTGLAVGDRVMGL--------------------------- 54 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCCCCCCCCceeEEEEEeeCCCCcCCCCCCEEEEE---------------------------
Confidence 8999999999999998876531 699999999999999999999986
Q ss_pred ccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc
Q 017460 115 GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG 194 (371)
Q Consensus 115 g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G 194 (371)
.+ |+|++|+.++.+.++++|++++..+++.+++++.++++++.+...+.+|++|+|+|
T Consensus 55 ----~~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g 112 (288)
T smart00829 55 ----AP------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHA 112 (288)
T ss_pred ----cC------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEec
Confidence 22 37999999999999999999999999999999999999887778899999999998
Q ss_pred -cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC--ceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHH
Q 017460 195 -LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMI 270 (371)
Q Consensus 195 -ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l 270 (371)
+|.+|+++++++++.|+ +|+++++++++.+.++++|+ +.+++++ ..++.+.+.+.+++ ++|+++|++++ ..+
T Consensus 113 ~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~vi~~~~~-~~~ 188 (288)
T smart00829 113 AAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSR--DLSFADEILRATGGRGVDVVLNSLAG-EFL 188 (288)
T ss_pred CCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCC--CccHHHHHHHHhCCCCcEEEEeCCCH-HHH
Confidence 49999999999999999 89999999999999999998 6778776 55677888888777 89999999986 578
Q ss_pred HHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC-----cCCCHHHHHHHHHcCCCCCCcceeeee
Q 017460 271 TTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK-----PKTDLPSLVNRYLKKEFMVDEFITHNL 345 (371)
Q Consensus 271 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~ 345 (371)
..++++++++ |+++.+|..........+...+.++.++.+..+..+. ....+..+++++.++++.+. ..+.|
T Consensus 189 ~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 265 (288)
T smart00829 189 DASLRCLAPG-GRFVEIGKRDIRDNSQLGMAPFRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--PVTVF 265 (288)
T ss_pred HHHHHhccCC-cEEEEEcCcCCccccccchhhhcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--CceEE
Confidence 8899999997 9999998653211112222222345555444322110 01235667778888876643 34789
Q ss_pred cchhHHHHHHHHHcCCee-eEEE
Q 017460 346 LFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
+++++.++++.+..+... |+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~ivv 288 (288)
T smart00829 266 PISDVEDAFRYMQQGKHIGKVVL 288 (288)
T ss_pred cHHHHHHHHHHHhcCCCcceEeC
Confidence 999999999999887665 6653
|
Enoylreductase in Polyketide synthases. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=238.45 Aligned_cols=283 Identities=19% Similarity=0.190 Sum_probs=238.6
Q ss_pred eEEEEeecC---CCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------------eEEEEEeeCCCCCCCCCCCEE
Q 017460 25 LVVEEVEVN---PPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------------CCRIVESVGPGVTEFNEGEHV 84 (371)
Q Consensus 25 l~~~~~~~p---~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------------~~G~V~~~G~~v~~~~~Gd~V 84 (371)
++|.+-|.. +..++.=+--|-|++||.+|+....|..++ |+|+ .+-|.||
T Consensus 1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence 778777754 236677788899999999999988887765 2443 4569999
Q ss_pred EeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhh
Q 017460 85 LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKI 164 (371)
Q Consensus 85 ~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~a 164 (371)
++.. +.. ++++.+.++.+++|.+|+.+.+++|
T Consensus 1499 M~mv------------------------------pAk------------------sLATt~l~~rd~lWevP~~WTleeA 1530 (2376)
T KOG1202|consen 1499 MGMV------------------------------PAK------------------SLATTVLASRDFLWEVPSKWTLEEA 1530 (2376)
T ss_pred EEee------------------------------ehh------------------hhhhhhhcchhhhhhCCcccchhhc
Confidence 8873 222 6999999999999999999999999
Q ss_pred hhcchhhhhHHhHhhhhcCCCCCCEEEEE-ccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC----CceEeCCC
Q 017460 165 CLLSCGLSAGLGAAWNVADISKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG----VTEFLNPN 239 (371)
Q Consensus 165 a~~~~~~~~a~~~l~~~~~~~~~~~VlI~-Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg----~~~vi~~~ 239 (371)
+++|+.|+||||||..+..+++|+++||+ |+|++|++||.+|.+.|+ +|+.++.+.+|++++.++- ..++-|++
T Consensus 1531 stVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSR 1609 (2376)
T KOG1202|consen 1531 STVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSR 1609 (2376)
T ss_pred ccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhcccccc
Confidence 99999999999999999999999999999 579999999999999999 9999999999999986533 34566777
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+.+|.+.+.+.|.| |+|+|++.... +.++.+++||+.. |||..+|-..-+...++....+++|.+++|.-+.+..
T Consensus 1610 --dtsFEq~vl~~T~GrGVdlVLNSLae-EkLQASiRCLa~~-GRFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsvm 1685 (2376)
T KOG1202|consen 1610 --DTSFEQHVLWHTKGRGVDLVLNSLAE-EKLQASIRCLALH-GRFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSVM 1685 (2376)
T ss_pred --cccHHHHHHHHhcCCCeeeehhhhhH-HHHHHHHHHHHhc-CeeeeecceecccCCcchhhhhhcccceeeeehhhhh
Confidence 78999999999999 99999999875 5799999999997 9999999766556667777888899999998766555
Q ss_pred cC--CCHHHHHHHHHcCCCC--CCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 319 PK--TDLPSLVNRYLKKEFM--VDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 319 ~~--~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
+. +.+.++..++.+|.-. .+|+-+++|+-.++++||+.|.+++++ ||||++.
T Consensus 1686 ege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikvr 1742 (2376)
T KOG1202|consen 1686 EGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKVR 1742 (2376)
T ss_pred cCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEEc
Confidence 42 4567778888777443 455667999999999999999999999 9999763
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=198.13 Aligned_cols=237 Identities=30% Similarity=0.396 Sum_probs=187.1
Q ss_pred eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceee
Q 017460 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 143 (371)
Q Consensus 64 ~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~ 143 (371)
++|+|+++|++++.+++||+|+.. +.|++
T Consensus 28 ~~G~V~~vG~~v~~~~~Gd~V~~~---------------------------------------------------~~~~~ 56 (277)
T cd08255 28 SVGRVVEVGSGVTGFKPGDRVFCF---------------------------------------------------GPHAE 56 (277)
T ss_pred eeEEEEEeCCCCCCCCCCCEEEec---------------------------------------------------CCcce
Confidence 699999999999999999999976 26899
Q ss_pred EEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhh
Q 017460 144 YTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK 223 (371)
Q Consensus 144 ~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~ 223 (371)
|+.++.+.++++|++++..+++.+ +++.+|++++ ...++++++++||+|+|.+|++++++|+++|+++|+++++++++
T Consensus 57 ~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~ 134 (277)
T cd08255 57 RVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAAR 134 (277)
T ss_pred EEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHH
Confidence 999999999999999999999988 7899999987 57889999999999989999999999999999339999999999
Q ss_pred HHHHHHcC-CceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh
Q 017460 224 CEKAKAFG-VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG 301 (371)
Q Consensus 224 ~~~~~~lg-~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~ 301 (371)
.+.++++| ++.+++.. . ..+.+ ++|++||+++....+...+++++++ |+++.+|..... .......
T Consensus 135 ~~~~~~~g~~~~~~~~~--~--------~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~-~~~~~~~ 202 (277)
T cd08255 135 RELAEALGPADPVAADT--A--------DEIGGRGADVVIEASGSPSALETALRLLRDR-GRVVLVGWYGLK-PLLLGEE 202 (277)
T ss_pred HHHHHHcCCCccccccc--h--------hhhcCCCCCEEEEccCChHHHHHHHHHhcCC-cEEEEEeccCCC-ccccHHH
Confidence 99999999 55555442 1 12244 8999999998767789999999997 999999876442 1111111
Q ss_pred eeeeccEEEecccCCC---------CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCC--eeeEEE
Q 017460 302 LFLSGRTLKGSLFGGW---------KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK--CLRSVI 367 (371)
Q Consensus 302 ~~~~~~~i~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~--~~kvvi 367 (371)
...+..++.+...... ...+.+.++++++.++.+... +.++|+++++.+||+.+.+++ ..|+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 203 FHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEAL--ITHRVPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred HHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCcccc--ccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence 1123445555543221 112568889999999986543 468899999999999998773 337764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=184.54 Aligned_cols=279 Identities=20% Similarity=0.245 Sum_probs=212.1
Q ss_pred CCCCCCcEEEEEeeecCCcchhhhhc---CC-----C-CC------eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCcc
Q 017460 33 NPPQPEEIRIKVVCTSLCRSDITAWE---TQ-----W-PQ------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQ 97 (371)
Q Consensus 33 p~~~~~evlV~v~~~~i~~~D~~~~~---g~-----~-~~------~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~ 97 (371)
.++++++|+||.+|-+.++-..-... +. + +. -+|+|++. .-+++++||.|....
T Consensus 33 ~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g~~--------- 101 (343)
T KOG1196|consen 33 VPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWGIV--------- 101 (343)
T ss_pred CCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEEec---------
Confidence 45689999999999998864321111 11 1 11 28999984 556899999998862
Q ss_pred ccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC--ceEECCC--CCChhhhh-hcchhhh
Q 017460 98 CKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSS--IAPLEKIC-LLSCGLS 172 (371)
Q Consensus 98 c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~~P~--~~~~~~aa-~~~~~~~ 172 (371)
+|.||.++++. ..+++|. ++++.-.. ++..+..
T Consensus 102 ------------------------------------------gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~gl 139 (343)
T KOG1196|consen 102 ------------------------------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGL 139 (343)
T ss_pred ------------------------------------------cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchh
Confidence 59999999764 4555554 33333222 3455888
Q ss_pred hHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHH
Q 017460 173 AGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 173 ~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~ 250 (371)
|||-.+++.+..++|++|+|-|| |++|+++.|+|+.+|+ +|+....+++|.+++ .+||.+.++||.+ +.+...+++
T Consensus 140 TAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~-e~~~~~aL~ 217 (343)
T KOG1196|consen 140 TAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE-ESDLSAALK 217 (343)
T ss_pred HHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC-ccCHHHHHH
Confidence 99999999999999999999985 9999999999999999 999999999999999 4579999999984 448888888
Q ss_pred HHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-----CeeecchheeeeccEEEecccCCCCcC--CCH
Q 017460 251 RITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-----PEVAAHYGLFLSGRTLKGSLFGGWKPK--TDL 323 (371)
Q Consensus 251 ~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~~~--~~~ 323 (371)
+....|+|+.||.+|+. .++..+..++.. ||++.+|..+.. ..+.-....+.+.+.+.|+....+.+. +-+
T Consensus 218 r~~P~GIDiYfeNVGG~-~lDavl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~l 295 (343)
T KOG1196|consen 218 RCFPEGIDIYFENVGGK-MLDAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFL 295 (343)
T ss_pred HhCCCcceEEEeccCcH-HHHHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHH
Confidence 88878999999999995 899999999996 999999976431 111111233456778888755544332 234
Q ss_pred HHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 324 PSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
..+..++++|+|...+-+. -.|+..+.||.-|..++.. |.++++.
T Consensus 296 d~l~~~ikegKI~y~edi~--~Glen~P~A~vglf~GkNvGKqiv~va 341 (343)
T KOG1196|consen 296 DFLLPYIKEGKITYVEDIA--DGLENGPSALVGLFHGKNVGKQLVKVA 341 (343)
T ss_pred HHHHHHHhcCceEEehhHH--HHHhccHHHHHHHhccCcccceEEEee
Confidence 5677788899988765443 3799999999999999887 8888764
|
|
| >PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=139.49 Aligned_cols=98 Identities=35% Similarity=0.566 Sum_probs=84.0
Q ss_pred CCcEEEEEeeecCCcchhhhhcCCCC-C----------eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCC
Q 017460 37 PEEIRIKVVCTSLCRSDITAWETQWP-Q----------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNT 105 (371)
Q Consensus 37 ~~evlV~v~~~~i~~~D~~~~~g~~~-~----------~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~ 105 (371)
|+||+|||.+++||++|+++++|... . ++|+|+++|++++.|++||+|++.+...|+.|.+|..+++++
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 68999999999999999999998311 1 699999999999999999999999988899999999999999
Q ss_pred cccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEEC
Q 017460 106 CEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV 155 (371)
Q Consensus 106 c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~ 155 (371)
|.+....+.+ .+ |+||||+.+++++++|+
T Consensus 81 c~~~~~~g~~---~~------------------G~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEVLGLG---LD------------------GGFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEETTTS---ST------------------CSSBSEEEEEGGGEEEE
T ss_pred CCCCCEeEcC---CC------------------CcccCeEEEehHHEEEC
Confidence 9877764333 22 48999999999999985
|
1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=129.31 Aligned_cols=127 Identities=28% Similarity=0.413 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHH
Q 017460 197 TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQ 275 (371)
Q Consensus 197 ~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~ 275 (371)
++|++++|+|+++|+ +|++++++++|++.++++|++++++++ +.++.+.+++++++ ++|+||||+|....++.+++
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~--~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~ 77 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYS--DDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIK 77 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETT--TSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhccccccccc--ccccccccccccccccceEEEEecCcHHHHHHHHH
Confidence 589999999999997 999999999999999999999999997 66799999999998 99999999998789999999
Q ss_pred HhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCCCCcCCCHHHHHHHHH
Q 017460 276 SCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGGWKPKTDLPSLVNRYL 331 (371)
Q Consensus 276 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~ 331 (371)
+++++ |+++.+|.... ....++...+ .+++++.|++.+. .++++++++++.
T Consensus 78 ~l~~~-G~~v~vg~~~~-~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la 129 (130)
T PF00107_consen 78 LLRPG-GRIVVVGVYGG-DPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLA 129 (130)
T ss_dssp HEEEE-EEEEEESSTST-SEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH
T ss_pred HhccC-CEEEEEEccCC-CCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhc
Confidence 99997 99999999872 4455554443 5699999998765 357888887764
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=122.02 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=132.8
Q ss_pred hHhhhhcC-CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhC
Q 017460 176 GAAWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 176 ~~l~~~~~-~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~ 254 (371)
.++.+..+ .-+|++|+|+|+|.+|+.+++.++.+|+ +|++++.++.|++.++.+|++.+ + ..+.+
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~-------~~e~v----- 255 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T-------MEEAV----- 255 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c-------HHHHH-----
Confidence 33334333 3679999999999999999999999999 89999999999999999998532 1 11222
Q ss_pred CCccEEEEcCCChHHHHHH-HHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCCCHH--HHHHHHH
Q 017460 255 GGADYSFECIGDTGMITTA-LQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLP--SLVNRYL 331 (371)
Q Consensus 255 gg~dvVid~~g~~~~l~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~--~~~~~~~ 331 (371)
.++|+||+++|....+... +..++++ |+++.+|.. ...++..... .+++++.++..... ..+++ ..+.++.
T Consensus 256 ~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~--~~eId~~~L~-~~el~i~g~~~~~~--~~~~~~g~aI~LLa 329 (413)
T cd00401 256 KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF--DVEIDVKGLK-ENAVEVVNIKPQVD--RYELPDGRRIILLA 329 (413)
T ss_pred cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC--CCccCHHHHH-hhccEEEEccCCcc--eEEcCCcchhhhhh
Confidence 2689999999988778765 9999997 999999854 2334443332 35778877754321 22455 6899999
Q ss_pred cCCC-CCCcceeee-----ecch-hHHHHHHHHHcCCee--eEEEeCC
Q 017460 332 KKEF-MVDEFITHN-----LLFE-DINQAFNLMKEGKCL--RSVIHMP 370 (371)
Q Consensus 332 ~~~~-~~~~~i~~~-----~~~~-~~~~a~~~~~~~~~~--kvvi~~~ 370 (371)
+|++ ++...++|. |+|+ ++.++++.+.++... |+++.++
T Consensus 330 ~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~ 377 (413)
T cd00401 330 EGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK 377 (413)
T ss_pred CcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence 9998 888888888 9999 999999999877653 7777653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-11 Score=114.86 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=111.4
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCC-----------chHHHHHHH
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNN-----------EPVQQVIKR 251 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~-----------~~~~~~v~~ 251 (371)
..++++|+|+|+|++|+++++.|+.+|+ +|++++.++++++.++++|++.+ ++..+.+ .++.+..++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4679999999999999999999999999 89999999999999999999854 5553211 133333333
Q ss_pred H-hC--CCccEEEEcCCCh-----HH-HHHHHHHhccCCceEEEecCCCC-CCeeecchhe-ee-eccEEEecccCCCCc
Q 017460 252 I-TD--GGADYSFECIGDT-----GM-ITTALQSCCDGWGLAVTLGVPKL-KPEVAAHYGL-FL-SGRTLKGSLFGGWKP 319 (371)
Q Consensus 252 ~-~~--gg~dvVid~~g~~-----~~-l~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~-~~-~~~~i~g~~~~~~~~ 319 (371)
. .+ +++|+||+|++.+ .. .++.++.++++ |+++.+|...+ .-..+.+... +. +++++.|.+. +.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n--~P- 316 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTD--LP- 316 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeCC--Cc-
Confidence 3 33 2799999999863 24 49999999998 99999987532 2123332222 23 6889988763 22
Q ss_pred CCCHHHHHHHHHcCCCCCCccee
Q 017460 320 KTDLPSLVNRYLKKEFMVDEFIT 342 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~ 342 (371)
.+....+.+++.++.+++.++++
T Consensus 317 ~~~p~~As~lla~~~i~l~~lIt 339 (509)
T PRK09424 317 SRLPTQSSQLYGTNLVNLLKLLC 339 (509)
T ss_pred hhHHHHHHHHHHhCCccHHHHhc
Confidence 22333588888888877666654
|
|
| >PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-11 Score=98.44 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=74.9
Q ss_pred cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC--ChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeecc
Q 017460 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG--DTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGR 307 (371)
Q Consensus 230 lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g--~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~ 307 (371)
||+++++|++ ..++ ...+++|+|||++| +...+..++++| ++ |+++.++. ....+... ....
T Consensus 1 LGAd~vidy~--~~~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~----~~~~~~~~--~~~~ 64 (127)
T PF13602_consen 1 LGADEVIDYR--DTDF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG----DLPSFARR--LKGR 64 (127)
T ss_dssp CT-SEEEETT--CSHH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S----HHHHHHHH--HHCH
T ss_pred CCcCEEecCC--Cccc------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC----cccchhhh--hccc
Confidence 6999999997 4555 22349999999999 654446677778 97 99999974 00011110 1111
Q ss_pred EEEecccCCC---C-cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEE
Q 017460 308 TLKGSLFGGW---K-PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVI 367 (371)
Q Consensus 308 ~i~g~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi 367 (371)
.+....+... . ..+.+.++.+++.+|++++. +.++||++++.+|++.+++++.. |+||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~~--i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 65 SIRYSFLFSVDPNAIRAEALEELAELVAEGKLKPP--IDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp HCEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred ceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEEe--eccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 2222222110 0 12358899999999997765 77899999999999999999998 9986
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.8e-07 Score=82.34 Aligned_cols=163 Identities=19% Similarity=0.238 Sum_probs=100.1
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCCC-EEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhCC
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~l----g~~~vi~~~~~~~~~~~~v~~~~~g 255 (371)
.+.++++++||.+|+|+ |..++++++..|.. +|++++.+++.++.+++. +...+-.. ..++. .+ .+.++
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~---~~d~~-~l-~~~~~ 145 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFR---LGEIE-AL-PVADN 145 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEE---Ecchh-hC-CCCCC
Confidence 45688999999999987 88888888887753 799999999998888663 33221100 11111 11 12234
Q ss_pred CccEEEEcC------CChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcCCCHHHHHHH
Q 017460 256 GADYSFECI------GDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNR 329 (371)
Q Consensus 256 g~dvVid~~------g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~ 329 (371)
.||+|+... .....++++++.|+++ |+++..+..... .+ +.. +.+...+.+..... .....++.++
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~-~~--~~~-~~~~~~~~~~~~~~---~~~~~e~~~~ 217 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRG-EL--PEE-IRNDAELYAGCVAG---ALQEEEYLAM 217 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccC-CC--CHH-HHHhHHHHhccccC---CCCHHHHHHH
Confidence 899998643 2235689999999998 999987654321 11 111 11122222111111 2345667777
Q ss_pred HHcCCCC-CCcceeeeecchhHHHHHHHH
Q 017460 330 YLKKEFM-VDEFITHNLLFEDINQAFNLM 357 (371)
Q Consensus 330 ~~~~~~~-~~~~i~~~~~~~~~~~a~~~~ 357 (371)
+.+..+. ........++++++.++++.+
T Consensus 218 l~~aGf~~v~i~~~~~~~l~~~~~~~~~~ 246 (272)
T PRK11873 218 LAEAGFVDITIQPKREYRIPDAREFLEDW 246 (272)
T ss_pred HHHCCCCceEEEeccceecccHHHHHHHh
Confidence 7663333 222234568899999999988
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.1e-07 Score=85.56 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=81.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCC-----------CCchHHHHHHHH
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPND-----------NNEPVQQVIKRI 252 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~-----------~~~~~~~~v~~~ 252 (371)
.++++|+|+|+|.+|++++++++.+|+ .|++++.++++++.++++|++.+ ++..+ -..++.+...++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 457899999999999999999999999 89999999999999999998753 33211 012344444444
Q ss_pred hC---CCccEEEEcC---CChH---HHHHHHHHhccCCceEEEecCCCC
Q 017460 253 TD---GGADYSFECI---GDTG---MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 253 ~~---gg~dvVid~~---g~~~---~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+. .++|+||+|+ |.+. ..++.++.++++ +.++.++...+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~G 288 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQG 288 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCC
Confidence 43 2799999999 5433 457789999998 99999986554
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.2e-06 Score=78.02 Aligned_cols=103 Identities=23% Similarity=0.351 Sum_probs=78.5
Q ss_pred HhHhhhhcCCC-CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh
Q 017460 175 LGAAWNVADIS-KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 175 ~~~l~~~~~~~-~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~ 253 (371)
|.++.+..++. .|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|.. +++ +.+.+
T Consensus 199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~~-------l~eal---- 265 (425)
T PRK05476 199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VMT-------MEEAA---- 265 (425)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ecC-------HHHHH----
Confidence 44443332444 79999999999999999999999999 999999999887777666764 221 22221
Q ss_pred CCCccEEEEcCCChHHHH-HHHHHhccCCceEEEecCCCC
Q 017460 254 DGGADYSFECIGDTGMIT-TALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 254 ~gg~dvVid~~g~~~~l~-~~~~~l~~~~G~~v~~g~~~~ 292 (371)
.++|+||+++|....+. ..+..++++ +.++..|....
T Consensus 266 -~~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d~ 303 (425)
T PRK05476 266 -ELGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFDN 303 (425)
T ss_pred -hCCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCCC
Confidence 26899999999876676 678889997 88888887643
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-05 Score=71.36 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=75.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+.+|+|+|.|.+|+.+++.++.+|+ +|+++++++++++.++++|+..+ .. . .+.+... ++|+||++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~----~----~l~~~l~-~aDiVI~t~p 219 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL----S----ELAEEVG-KIDIIFNTIP 219 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH----H----HHHHHhC-CCCEEEECCC
Confidence 58999999999999999999999999 99999999999888888987532 11 1 1222222 6999999998
Q ss_pred ChHHHHHHHHHhccCCceEEEecCCCCC
Q 017460 266 DTGMITTALQSCCDGWGLAVTLGVPKLK 293 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~~G~~v~~g~~~~~ 293 (371)
.....+..++.++++ +.++.++...+.
T Consensus 220 ~~~i~~~~l~~~~~g-~vIIDla~~pgg 246 (296)
T PRK08306 220 ALVLTKEVLSKMPPE-ALIIDLASKPGG 246 (296)
T ss_pred hhhhhHHHHHcCCCC-cEEEEEccCCCC
Confidence 643446777889997 999999876553
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=75.48 Aligned_cols=93 Identities=24% Similarity=0.392 Sum_probs=74.6
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
...|++|+|+|.|.+|+..++.++.+|+ +|++++.++.+...++..|+. +++ ..+.+ .+.|+||++
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~-------leeal-----~~aDVVIta 257 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT-------MEEAA-----KIGDIFITA 257 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC-------HHHHH-----hcCCEEEEC
Confidence 3679999999999999999999999999 899999999887777777763 321 11222 257999999
Q ss_pred CCChHHHHH-HHHHhccCCceEEEecCCC
Q 017460 264 IGDTGMITT-ALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~~l~~-~~~~l~~~~G~~v~~g~~~ 291 (371)
+|....+.. .+..++++ +.++..|...
T Consensus 258 TG~~~vI~~~~~~~mK~G-ailiN~G~~~ 285 (406)
T TIGR00936 258 TGNKDVIRGEHFENMKDG-AIVANIGHFD 285 (406)
T ss_pred CCCHHHHHHHHHhcCCCC-cEEEEECCCC
Confidence 998777764 88889997 8888887653
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-07 Score=87.25 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=100.6
Q ss_pred eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceee
Q 017460 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 143 (371)
Q Consensus 64 ~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~ 143 (371)
+++.+.+|++++++ .|++.+.. |++|.+| ++.|......+..+ + +.|++
T Consensus 94 a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~~g~~l---~------------------~lf~~ 142 (417)
T TIGR01035 94 AVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKTVGKVL---E------------------RLFQK 142 (417)
T ss_pred HHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCCchHHH---H------------------HHHHH
Confidence 57778888888766 66777777 8899888 56666555422211 1 37888
Q ss_pred EEEeeCCceEE---C-CCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcC
Q 017460 144 YTVVHSGCAVK---V-SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT 219 (371)
Q Consensus 144 ~~~~~~~~~~~---~-P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~ 219 (371)
++.+.. .+.. + +..++...+| .-.+ .+.....++++|+|+|+|.+|..+++.+...|+.+|+++.+
T Consensus 143 a~~~~k-~vr~~t~i~~~~vSv~~~A--------v~la-~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 143 AFSVGK-RVRTETDISAGAVSISSAA--------VELA-ERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred HHHHhh-hhhhhcCCCCCCcCHHHHH--------HHHH-HHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 887765 3322 3 2223322221 1111 13334467899999999999999999999999669999999
Q ss_pred ChhhHH-HHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHH
Q 017460 220 NPEKCE-KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGM 269 (371)
Q Consensus 220 ~~~~~~-~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~ 269 (371)
+.++.. .++++|.. .++. .+..+.+ .++|+||+|++.+..
T Consensus 213 s~~ra~~la~~~g~~-~i~~----~~l~~~l-----~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 213 TYERAEDLAKELGGE-AVKF----EDLEEYL-----AEADIVISSTGAPHP 253 (417)
T ss_pred CHHHHHHHHHHcCCe-EeeH----HHHHHHH-----hhCCEEEECCCCCCc
Confidence 988855 56777764 2322 1222222 169999999987643
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-06 Score=76.00 Aligned_cols=107 Identities=23% Similarity=0.284 Sum_probs=79.6
Q ss_pred ceEECCCCCChhhhhhcchhhhhHHhHhhhhcCC----CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhH-H
Q 017460 151 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADI----SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC-E 225 (371)
Q Consensus 151 ~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~----~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~-~ 225 (371)
.++++|+.+..+.++... +.++++.++ +.+.. .++.+|+|+|+|.+|..+++.++..|+++|+++++++++. +
T Consensus 140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av-~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 140 KAIKVGKRVRTETGISRG-AVSISSAAV-ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred HHHHHHHHHhhhcCCCCC-CcCHHHHHH-HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 567789998888887775 677777775 33332 4689999999999999999999988877899999998875 5
Q ss_pred HHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHH
Q 017460 226 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGM 269 (371)
Q Consensus 226 ~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~ 269 (371)
+++++|.. +++. .++.+.+ ..+|+||.+++.+..
T Consensus 218 la~~~g~~-~~~~----~~~~~~l-----~~aDvVi~at~~~~~ 251 (311)
T cd05213 218 LAKELGGN-AVPL----DELLELL-----NEADVVISATGAPHY 251 (311)
T ss_pred HHHHcCCe-EEeH----HHHHHHH-----hcCCEEEECCCCCch
Confidence 66888873 3322 1222222 158999999998654
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.1e-05 Score=73.63 Aligned_cols=101 Identities=25% Similarity=0.370 Sum_probs=78.1
Q ss_pred HhHhhhhcCC-CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh
Q 017460 175 LGAAWNVADI-SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 175 ~~~l~~~~~~-~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~ 253 (371)
+.++.+..++ -.|++|+|+|.|.+|+..++.++.+|+ +|+++++++.+...+...|.. +++ ..+.+.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~-vv~-------leEal~--- 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQ-VLT-------LEDVVS--- 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCe-ecc-------HHHHHh---
Confidence 3334344343 569999999999999999999999999 999999999887777777765 221 222222
Q ss_pred CCCccEEEEcCCChHHH-HHHHHHhccCCceEEEecCC
Q 017460 254 DGGADYSFECIGDTGMI-TTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 254 ~gg~dvVid~~g~~~~l-~~~~~~l~~~~G~~v~~g~~ 290 (371)
..|+|+++.|....+ ...+..++++ +.++.+|..
T Consensus 309 --~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~ 343 (477)
T PLN02494 309 --EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHF 343 (477)
T ss_pred --hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCC
Confidence 579999999986554 7899999997 999999874
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.4e-05 Score=69.61 Aligned_cols=129 Identities=21% Similarity=0.234 Sum_probs=81.5
Q ss_pred ceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcC
Q 017460 140 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT 219 (371)
Q Consensus 140 ~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~ 219 (371)
+|.+|.. +...++.+++++++..+.--. . ...+..+. ..+.++++||-+|+|. |..++.+++ .|+.+|++++.
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t-~~~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi 150 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGTHPT-T-RLCLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI 150 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCCCHH-H-HHHHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence 3555533 556778888887766554211 1 11122221 1256889999999987 887776554 67757999999
Q ss_pred ChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhCC--CccEEEEcCCCh---HHHHHHHHHhccCCceEEEecCC
Q 017460 220 NPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITDG--GADYSFECIGDT---GMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 220 ~~~~~~~~~~l----g~~~vi~~~~~~~~~~~~v~~~~~g--g~dvVid~~g~~---~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
++...+.+++. +....+. +..+ .||+|+...... ..++.+.+.|+++ |.++..|..
T Consensus 151 s~~~l~~A~~n~~~~~~~~~~~--------------~~~~~~~fD~Vvani~~~~~~~l~~~~~~~Lkpg-G~lilsgi~ 215 (250)
T PRK00517 151 DPQAVEAARENAELNGVELNVY--------------LPQGDLKADVIVANILANPLLELAPDLARLLKPG-GRLILSGIL 215 (250)
T ss_pred CHHHHHHHHHHHHHcCCCceEE--------------EccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCC-cEEEEEECc
Confidence 99988877553 2211010 1112 589998766543 2356788889998 999987654
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00017 Score=68.85 Aligned_cols=93 Identities=25% Similarity=0.392 Sum_probs=73.1
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
.-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+. +. ++.+.+ ...|+|+.+
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~-~~-------~leell-----~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQ-VV-------TLEDVV-----ETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCce-ec-------cHHHHH-----hcCCEEEEC
Confidence 4569999999999999999999999999 999998888877556556653 22 122222 168999999
Q ss_pred CCChHHHH-HHHHHhccCCceEEEecCCC
Q 017460 264 IGDTGMIT-TALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~~l~-~~~~~l~~~~G~~v~~g~~~ 291 (371)
+|....+. ..+..++++ +.++.+|...
T Consensus 317 tGt~~iI~~e~~~~MKpG-AiLINvGr~d 344 (476)
T PTZ00075 317 TGNKDIITLEHMRRMKNN-AIVGNIGHFD 344 (476)
T ss_pred CCcccccCHHHHhccCCC-cEEEEcCCCc
Confidence 98766664 889999997 9999998653
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00016 Score=65.45 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=70.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+++|+|.|.+|.+++..++.+|+ +|++.++++++.+.+.++|.. .+.. .+ +.+.. .++|+||++++
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~-~~~~----~~----l~~~l-~~aDiVint~P 218 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLI-PFPL----NK----LEEKV-AEIDIVINTIP 218 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-eecH----HH----HHHHh-ccCCEEEECCC
Confidence 47899999999999999999999999 999999999887777777753 2211 11 22222 26899999997
Q ss_pred ChHHHHHHHHHhccCCceEEEecCCCC
Q 017460 266 DTGMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
..-.-...++.++++ ..++.+++...
T Consensus 219 ~~ii~~~~l~~~k~~-aliIDlas~Pg 244 (287)
T TIGR02853 219 ALVLTADVLSKLPKH-AVIIDLASKPG 244 (287)
T ss_pred hHHhCHHHHhcCCCC-eEEEEeCcCCC
Confidence 642224567778886 88888887654
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=67.25 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=69.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+. .++......... ...+ .+.. ..+|+||+++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~-~~~l----~~~l-~~aDvVI~a~ 238 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN-AYEI----EDAV-KRADLLIGAV 238 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC-HHHH----HHHH-ccCCEEEEcc
Confidence 34569999999999999999999999 8999999998887774 455532222220 1222 2222 2689999997
Q ss_pred C---C--hH-HHHHHHHHhccCCceEEEecCCCC
Q 017460 265 G---D--TG-MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 265 g---~--~~-~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+ . +. .-+..++.++++ +.++.++...+
T Consensus 239 ~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~G 271 (370)
T TIGR00518 239 LIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQG 271 (370)
T ss_pred ccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCCC
Confidence 3 2 11 136777889997 99999886544
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00022 Score=72.86 Aligned_cols=138 Identities=21% Similarity=0.244 Sum_probs=88.4
Q ss_pred ceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc
Q 017460 140 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 140 ~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~ 218 (371)
++++|..+++..++.+ +.++.+++..... ...+..+|+++||+|+ |++|.+.++.+...|+ +|++++
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~ 453 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD 453 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence 4677777777777777 6666666642110 0122346899999985 9999999999999999 999999
Q ss_pred CChhhHHHH-HHcCC-----ceEeCCCCCCchHHHHHHHHh--CCCccEEEEcCCCh-----------------------
Q 017460 219 TNPEKCEKA-KAFGV-----TEFLNPNDNNEPVQQVIKRIT--DGGADYSFECIGDT----------------------- 267 (371)
Q Consensus 219 ~~~~~~~~~-~~lg~-----~~vi~~~~~~~~~~~~v~~~~--~gg~dvVid~~g~~----------------------- 267 (371)
++.++.+.+ +.++. ....|..+ .......+.+.. .+++|+||++.|..
T Consensus 454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd-~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g 532 (681)
T PRK08324 454 LDEEAAEAAAAELGGPDRALGVACDVTD-EAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATG 532 (681)
T ss_pred CCHHHHHHHHHHHhccCcEEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHH
Confidence 998876655 33443 12235441 223333333332 23799999999821
Q ss_pred --HHHHHHHHHhcc---CCceEEEecCCC
Q 017460 268 --GMITTALQSCCD---GWGLAVTLGVPK 291 (371)
Q Consensus 268 --~~l~~~~~~l~~---~~G~~v~~g~~~ 291 (371)
..++.++..++. + |+++.+++..
T Consensus 533 ~~~l~~~~~~~l~~~~~~-g~iV~vsS~~ 560 (681)
T PRK08324 533 HFLVAREAVRIMKAQGLG-GSIVFIASKN 560 (681)
T ss_pred HHHHHHHHHHHHHhcCCC-cEEEEECCcc
Confidence 123444555555 5 8899988754
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.8e-05 Score=76.67 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=59.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC---------------------hhhHHHHHHcCCceEeCCCCC
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN---------------------PEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~---------------------~~~~~~~~~lg~~~vi~~~~~ 241 (371)
..++|++|+|+|+|+.|+++++.++..|+ +|++++.. +.+++.++++|++..++...
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~- 210 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV- 210 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE-
Confidence 46789999999999999999999999999 89988743 34567788899987776531
Q ss_pred CchH-HHHHHHHhCCCccEEEEcCCChH
Q 017460 242 NEPV-QQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 242 ~~~~-~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
..+. .+.+ ..++|+||+++|...
T Consensus 211 ~~~~~~~~~----~~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 211 GEDITLEQL----EGEFDAVFVAIGAQL 234 (564)
T ss_pred CCcCCHHHH----HhhCCEEEEeeCCCC
Confidence 0111 1111 227999999999753
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.5e-05 Score=71.28 Aligned_cols=88 Identities=23% Similarity=0.351 Sum_probs=62.8
Q ss_pred hhhhHHhHhhhhcC----CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHH-HHHHcCCceEeCCCCCCch
Q 017460 170 GLSAGLGAAWNVAD----ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVTEFLNPNDNNEP 244 (371)
Q Consensus 170 ~~~~a~~~l~~~~~----~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~vi~~~~~~~~ 244 (371)
+.++++.++ +.+. ..++.+|+|+|+|.+|.++++.++..|+.+|+++.+++++.. +++++|.. +++. .+
T Consensus 162 ~~Sv~~~Av-~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~----~~ 235 (423)
T PRK00045 162 AVSVASAAV-ELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPL----DE 235 (423)
T ss_pred CcCHHHHHH-HHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeH----HH
Confidence 455666665 2222 257899999999999999999999999878999999988865 56778753 3322 12
Q ss_pred HHHHHHHHhCCCccEEEEcCCChH
Q 017460 245 VQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 245 ~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
..+.+ .++|+||+|++.+.
T Consensus 236 ~~~~l-----~~aDvVI~aT~s~~ 254 (423)
T PRK00045 236 LPEAL-----AEADIVISSTGAPH 254 (423)
T ss_pred HHHHh-----ccCCEEEECCCCCC
Confidence 22221 26899999998754
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00035 Score=59.18 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=77.6
Q ss_pred hhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh----hHHHHHHcCCceEe-CC
Q 017460 164 ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE----KCEKAKAFGVTEFL-NP 238 (371)
Q Consensus 164 aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~----~~~~~~~lg~~~vi-~~ 238 (371)
.-++.-+...|. + .+...++++++||-+|+|+ |..++-+++..| +|+.+++.++ -++.++.+|...+. ..
T Consensus 52 gqtis~P~~vA~-m-~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 52 GQTISAPHMVAR-M-LQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred CceecCcHHHHH-H-HHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 334443444444 2 3778899999999999874 899999999888 8999999887 33445778885432 22
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEE-ec
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVT-LG 288 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~-~g 288 (371)
.+.. ..+... .||.|+-+.+.+..=+..++.|+++ |+++. +|
T Consensus 127 gDG~-------~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~PvG 170 (209)
T COG2518 127 GDGS-------KGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIPVG 170 (209)
T ss_pred CCcc-------cCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEEEc
Confidence 1111 223333 8999988877765446788999998 99876 44
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00023 Score=56.85 Aligned_cols=74 Identities=27% Similarity=0.391 Sum_probs=54.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc--eEeCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT--EFLNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~--~vi~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
-++.++||+|+|++|.+++..+...|+++++++.|+.+|.+.+ +.++.. .++... ++.+.+ ..+|+||
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~----~~~~~~-----~~~DivI 80 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE----DLEEAL-----QEADIVI 80 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG----GHCHHH-----HTESEEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH----HHHHHH-----hhCCeEE
Confidence 3589999999999999999999999998899999999987766 455322 234332 222111 1699999
Q ss_pred EcCCCh
Q 017460 262 ECIGDT 267 (371)
Q Consensus 262 d~~g~~ 267 (371)
.|++..
T Consensus 81 ~aT~~~ 86 (135)
T PF01488_consen 81 NATPSG 86 (135)
T ss_dssp E-SSTT
T ss_pred EecCCC
Confidence 999875
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00051 Score=62.44 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=64.0
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc----CCce-EeCCCCCCchHHHHHHHHhCCCcc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE-FLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~~-vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
..++++||-+|+|+ |..++.+++ +|+.+|++++.++...+.+++. +... +.... .+ ......++||
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~---~~----~~~~~~~~fD 227 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL---IY----LEQPIEGKAD 227 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe---cc----cccccCCCce
Confidence 45789999999987 777777665 5766999999999887777542 2211 11110 01 1112234899
Q ss_pred EEEEcCCCh---HHHHHHHHHhccCCceEEEecCC
Q 017460 259 YSFECIGDT---GMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 259 vVid~~g~~---~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+|+...... ..+....+.|+++ |.++..|..
T Consensus 228 lVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAEVIKELYPQFSRLVKPG-GWLILSGIL 261 (288)
T ss_pred EEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCc
Confidence 998765433 2456778899997 999887654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00091 Score=57.77 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=62.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC----ceEeCCCCCCchHHHHHHHHhCC--Cc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV----TEFLNPNDNNEPVQQVIKRITDG--GA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~----~~vi~~~~~~~~~~~~v~~~~~g--g~ 257 (371)
+++.++|.|| +++|.+.++.+...|+ +|+.+.|+.++++.+ .+++. ...+|.++ .......+..+... .+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD-~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD-RAAVEAAIEALPEEFGRI 82 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC-HHHHHHHHHHHHHhhCcc
Confidence 4578899997 8999999999999999 999999999999877 56772 23456652 34556666666655 69
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+.++..|.
T Consensus 83 DiLvNNAGl 91 (246)
T COG4221 83 DILVNNAGL 91 (246)
T ss_pred cEEEecCCC
Confidence 999998885
|
|
| >PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.016 Score=52.51 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=84.3
Q ss_pred ceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhh---cCCCCCCEEEEEcc-ChHHHHHHHHHH-HcCCCEE
Q 017460 140 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV---ADISKGSTVVIFGL-GTVGLSVAQGAK-ARGASRI 214 (371)
Q Consensus 140 ~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~---~~~~~~~~VlI~Ga-g~~G~~ai~la~-~~G~~~v 214 (371)
.|-+|.++..+..+.- .....++..-| -+.|.|.. .+. -+.-..+.|+|..| +-.++..+..++ ..+.-++
T Consensus 90 ~YN~Y~r~~~d~~y~~--~~e~~~~LlrP-Lf~Tsfll-~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~ 165 (314)
T PF11017_consen 90 IYNQYLRVSADPAYDP--EREDWQMLLRP-LFITSFLL-DDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV 165 (314)
T ss_pred hhhceeecCCCcccCc--chhHHHHHHHH-HHHHHHHH-HHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence 4667777765544311 22233333333 45566643 121 12333456777775 677887777777 4444488
Q ss_pred EEEcCChhhHHHHHHcCC-ceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 215 IGVDTNPEKCEKAKAFGV-TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 215 i~~~~~~~~~~~~~~lg~-~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+.++ +..++.+.+.+|. +.++.|+ ++..+....--+++|..|+...+..+-+.+...--..+.+|...
T Consensus 166 vglT-S~~N~~Fve~lg~Yd~V~~Yd--------~i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th 234 (314)
T PF11017_consen 166 VGLT-SARNVAFVESLGCYDEVLTYD--------DIDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATH 234 (314)
T ss_pred EEEe-cCcchhhhhccCCceEEeehh--------hhhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence 9884 4556668899997 6788774 33334334667899999998777777777766423456666543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0034 Score=53.70 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=69.5
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHH----HHcC-CceEeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKA----KAFG-VTEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~----~~lg-~~~vi~~~~~~~~~~~~v~~~~ 253 (371)
....+.++++||.+|+|+ |.+++.+++..+. .+|++++.+++..+.+ +.+| .+.+.... .+..+.+.. .
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~---~d~~~~l~~-~ 108 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK---GEAPEILFT-I 108 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE---echhhhHhh-c
Confidence 456788999999999988 8889999887642 3899999999887765 4466 23222111 122222222 2
Q ss_pred CCCccEEEEcCCC---hHHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFECIGD---TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.+|.||...+. ...++.+.+.|+++ |+++..
T Consensus 109 ~~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 144 (198)
T PRK00377 109 NEKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID 144 (198)
T ss_pred CCCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence 2379999985543 23577888899997 998753
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0062 Score=54.80 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=55.8
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhC--CCccEEEEc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITD--GGADYSFEC 263 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~--gg~dvVid~ 263 (371)
+++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+.+...+ .|..+ ...+.+.+..... +++|++|++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~vi~~ 79 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND-GAALARLAEELEAEHGGLDVLINN 79 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEEEEC
Confidence 47899986 9999999999988999 99999999888777766665433 45542 2344444444322 379999999
Q ss_pred CCC
Q 017460 264 IGD 266 (371)
Q Consensus 264 ~g~ 266 (371)
.|.
T Consensus 80 ag~ 82 (274)
T PRK05693 80 AGY 82 (274)
T ss_pred CCC
Confidence 983
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0079 Score=52.74 Aligned_cols=103 Identities=22% Similarity=0.318 Sum_probs=67.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc---CCceEe--CCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---GVTEFL--NPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l---g~~~vi--~~~~~~~~~~~~v~~~~~--gg 256 (371)
++++|||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ .++ +..+.+ |..+ .....+.+.+... ++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS-TESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 4689999986 8999999999999999 999999998877655 222 222222 3331 2233333333221 36
Q ss_pred ccEEEEcCCChH-----------------------HHHHHHHHhccCCceEEEecCCC
Q 017460 257 ADYSFECIGDTG-----------------------MITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 257 ~dvVid~~g~~~-----------------------~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+|.++.+.+... .++..+..+.++ |+++.+++..
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~~ 138 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSMS 138 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecch
Confidence 899998887421 134455566676 8999887653
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0033 Score=52.79 Aligned_cols=89 Identities=31% Similarity=0.423 Sum_probs=63.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
-.|.+|.|+|.|.+|+..++.++.+|+ +|++.+++..........+.. ..++.+.+. ..|+|+.+.
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~--------~~~l~ell~-----~aDiv~~~~ 99 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVE--------YVSLDELLA-----QADIVSLHL 99 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEE--------ESSHHHHHH-----H-SEEEE-S
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccce--------eeehhhhcc-----hhhhhhhhh
Confidence 358999999999999999999999999 999999988877655565542 113333333 378998877
Q ss_pred CChH-----HHHHHHHHhccCCceEEEec
Q 017460 265 GDTG-----MITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 265 g~~~-----~l~~~~~~l~~~~G~~v~~g 288 (371)
..+. .-...++.++++ ..+|.++
T Consensus 100 plt~~T~~li~~~~l~~mk~g-a~lvN~a 127 (178)
T PF02826_consen 100 PLTPETRGLINAEFLAKMKPG-AVLVNVA 127 (178)
T ss_dssp SSSTTTTTSBSHHHHHTSTTT-EEEEESS
T ss_pred ccccccceeeeeeeeeccccc-eEEEecc
Confidence 6422 124667888886 7777764
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0034 Score=59.37 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=73.2
Q ss_pred hhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHH
Q 017460 171 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 171 ~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~ 250 (371)
-...+..+.+..+++++++||.+|+| .|..++.+++..|+ +|++++.+++..+.+++.....-+... ..++.
T Consensus 152 q~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~--~~D~~---- 223 (383)
T PRK11705 152 QEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIR--LQDYR---- 223 (383)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEE--ECchh----
Confidence 33444445577788999999999986 46778888888898 999999999999988764321111111 11221
Q ss_pred HHhCCCccEEEEc-----CCC---hHHHHHHHHHhccCCceEEEec
Q 017460 251 RITDGGADYSFEC-----IGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 251 ~~~~gg~dvVid~-----~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+ .+.||.|+.. ++. ...++.+.+.|+++ |.++...
T Consensus 224 ~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~ 267 (383)
T PRK11705 224 DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHT 267 (383)
T ss_pred hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 11 3479998753 333 23577888899998 9988754
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0042 Score=57.12 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=70.2
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHhC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~~~~~~~v~~~~~ 254 (371)
+...++++++||.+|+| .|..++.+++..+. ..|++++.+++..+.++ ++|.+.+.... .+..+. ...
T Consensus 74 ~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~---gD~~~~---~~~ 146 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC---GDGYYG---VPE 146 (322)
T ss_pred HhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---CChhhc---ccc
Confidence 55678899999999998 49999999988763 36999999998766553 46665332221 122111 112
Q ss_pred -CCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 255 -GGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 255 -gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
+.+|+|+.+.+........++.|+++ |+++..
T Consensus 147 ~~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence 37999999888665566778899997 997763
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0091 Score=50.58 Aligned_cols=101 Identities=23% Similarity=0.177 Sum_probs=64.3
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCC-Ccc
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDG-GAD 258 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~g-g~d 258 (371)
...+++|++||.+|+|+-+.+.....+..+..+|++++.++.+ +..++..+ .|.. +....+.+.+.... ++|
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~--~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFT--DEEVLNKIRERVGDDKVD 100 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCC--ChhHHHHHHHHhCCCCcc
Confidence 4557899999999988756544444444344489999998854 11233322 2333 33444555555555 899
Q ss_pred EEEE-cC----CC------------hHHHHHHHHHhccCCceEEEec
Q 017460 259 YSFE-CI----GD------------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 259 vVid-~~----g~------------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+|+. .. |. ...++.+.+.|+++ |+++...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence 9995 21 21 24677888999997 9988753
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0043 Score=50.52 Aligned_cols=92 Identities=23% Similarity=0.413 Sum_probs=61.4
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+-.|.+++|.|-|.+|.-.++.++.+|+ +|++++.+|-+.-.+.--|.. +. ...+.+ ...|++|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v~-------~~~~a~-----~~adi~vta 85 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-VM-------TLEEAL-----RDADIFVTA 85 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-EE--------HHHHT-----TT-SEEEE-
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-ec-------CHHHHH-----hhCCEEEEC
Confidence 4578999999999999999999999999 999999999887777655653 22 122222 257999999
Q ss_pred CCChHHH-HHHHHHhccCCceEEEecCC
Q 017460 264 IGDTGMI-TTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 264 ~g~~~~l-~~~~~~l~~~~G~~v~~g~~ 290 (371)
+|....+ .+.+..++.+ -.+...|..
T Consensus 86 TG~~~vi~~e~~~~mkdg-ail~n~Gh~ 112 (162)
T PF00670_consen 86 TGNKDVITGEHFRQMKDG-AILANAGHF 112 (162)
T ss_dssp SSSSSSB-HHHHHHS-TT-EEEEESSSS
T ss_pred CCCccccCHHHHHHhcCC-eEEeccCcC
Confidence 9976543 5778889985 555556654
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0069 Score=50.29 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=69.3
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHHhCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vi~~~~~~~~~~~~v~~~~~g 255 (371)
...++++|+.++=+|+|. |..+++++...-..+|++++++++..+.. ++||.+.+.-.. .+..+.+..+.
T Consensus 28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~---g~Ap~~L~~~~-- 101 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE---GDAPEALPDLP-- 101 (187)
T ss_pred HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe---ccchHhhcCCC--
Confidence 355788999888788764 66677777544445999999999987765 568876433221 12222222211
Q ss_pred CccEEEEcCCC--hHHHHHHHHHhccCCceEEEecCC
Q 017460 256 GADYSFECIGD--TGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 256 g~dvVid~~g~--~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
.+|.+|=--|. +..++.++..|+++ |++|.-...
T Consensus 102 ~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nait 137 (187)
T COG2242 102 SPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAIT 137 (187)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeec
Confidence 58998853332 23588999999998 999876554
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0052 Score=55.47 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=56.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHH---hCCCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRI---TDGGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~---~~gg~dvV 260 (371)
.+.+|||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+.+...+ .|..+ ...+.+.+... .++.+|++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~g~id~l 80 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE-PESIAALVAQVLELSGGRLDAL 80 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC-HHHHHHHHHHHHHHcCCCccEE
Confidence 4578999986 9999999998888999 99999999988887777665433 35542 22333333332 33479999
Q ss_pred EEcCC
Q 017460 261 FECIG 265 (371)
Q Consensus 261 id~~g 265 (371)
|.+.|
T Consensus 81 i~~Ag 85 (277)
T PRK05993 81 FNNGA 85 (277)
T ss_pred EECCC
Confidence 99876
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0047 Score=51.84 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=56.9
Q ss_pred CCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC---ceEeCCCCCCchHHHHHHHHhCC--CccE
Q 017460 186 KGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV---TEFLNPNDNNEPVQQVIKRITDG--GADY 259 (371)
Q Consensus 186 ~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~---~~vi~~~~~~~~~~~~v~~~~~g--g~dv 259 (371)
.|.+|||.| ++++|++.++-...+|= +||.+.|++++++.+++.-. ..+.|..+ .....+.+.++... ..++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d-~~~~~~lvewLkk~~P~lNv 81 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD-RDSRRELVEWLKKEYPNLNV 81 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc-hhhHHHHHHHHHhhCCchhe
Confidence 478999996 58999999999999997 99999999999999876443 34555542 22333334444333 6788
Q ss_pred EEEcCC
Q 017460 260 SFECIG 265 (371)
Q Consensus 260 Vid~~g 265 (371)
++++.|
T Consensus 82 liNNAG 87 (245)
T COG3967 82 LINNAG 87 (245)
T ss_pred eeeccc
Confidence 888776
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0064 Score=51.03 Aligned_cols=93 Identities=22% Similarity=0.319 Sum_probs=64.0
Q ss_pred EEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCCC-
Q 017460 190 VVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIGD- 266 (371)
Q Consensus 190 VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g~- 266 (371)
|+|+|+ |.+|...++.+...|. +|+++.|++++.+. ..+++.+. |.. +. +.+.+... ++|.||.+.|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~~~d~~--d~---~~~~~al~-~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEIIQGDLF--DP---DSVKAALK-GADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEEESCTT--CH---HHHHHHHT-TSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccceeeeh--hh---hhhhhhhh-hcchhhhhhhhh
Confidence 789997 9999999999999998 99999999998877 44444332 332 22 33444333 79999999984
Q ss_pred ---hHHHHHHHHHhccC-CceEEEecCCC
Q 017460 267 ---TGMITTALQSCCDG-WGLAVTLGVPK 291 (371)
Q Consensus 267 ---~~~l~~~~~~l~~~-~G~~v~~g~~~ 291 (371)
.......++.++.. -.+++.++...
T Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 72 PKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp TTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred cccccccccccccccccccccceeeeccc
Confidence 22355556655443 13677766543
|
... |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.027 Score=49.28 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=49.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH-HHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA-KAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~-~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
+++++||+|+ |++|.+.++.+...|+ +|+.+.+ ++++.+.+ .+++...+ .|..+ ...+.+.+.+ .+++|++|
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~--~~~id~li 80 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD-RDAVIDVVRK--SGALDILV 80 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC-HHHHHHHHHH--hCCCcEEE
Confidence 4789999986 9999999999989999 7777654 44544443 45565433 34431 1222232222 13699999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
++.|.
T Consensus 81 ~~ag~ 85 (237)
T PRK12742 81 VNAGI 85 (237)
T ss_pred ECCCC
Confidence 99874
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=55.43 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=66.4
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC---Cc-eEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG---VT-EFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg---~~-~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
.+|||+|+|.+|+.+++.+...|-.+|++.+++.++.+.+.+.. .. ..+|-. -.+++.++.. ++|+||++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-----d~~al~~li~-~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA-----DVDALVALIK-DFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc-----ChHHHHHHHh-cCCEEEEe
Confidence 47999999999999999988888459999999999999887664 32 344543 1223344433 46999999
Q ss_pred CCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 264 IGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
.+........-.|++.+ =.++......
T Consensus 76 ~p~~~~~~i~ka~i~~g-v~yvDts~~~ 102 (389)
T COG1748 76 APPFVDLTILKACIKTG-VDYVDTSYYE 102 (389)
T ss_pred CCchhhHHHHHHHHHhC-CCEEEcccCC
Confidence 98764443333445553 4566655443
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0071 Score=54.39 Aligned_cols=79 Identities=20% Similarity=0.342 Sum_probs=56.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
++.+++|+|+ |.+|...++.+...|+ +|+++++++++++.+.+.++.. ..|..+ .+.+...+.+... +++|++|
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~~~id~li 79 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD-EASIKAAVDTIIAEEGRIDVLV 79 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEEE
Confidence 3678999986 8999999999888999 9999999988877665555543 235542 3334444444322 3799999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 80 ~~ag~ 84 (273)
T PRK06182 80 NNAGY 84 (273)
T ss_pred ECCCc
Confidence 99873
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.017 Score=51.76 Aligned_cols=110 Identities=24% Similarity=0.316 Sum_probs=71.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E----eCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F----LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v----i~~~~~~~~~~~~v~~~~~- 254 (371)
.|..|+|.|| +++|.+.+.-.-..|+ +++.+.+..++++.+ ++.+... + .|..+ .++..+.+.+...
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~-~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD-EESVKKFVEWAIRH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC-HHHHHHHHHHHHHh
Confidence 4788999997 8999988888888899 777777777766655 4555433 2 24442 3444555443332
Q ss_pred -CCccEEEEcCCCh-------------------------HHHHHHHHHhccCC-ceEEEecCCCCCCeee
Q 017460 255 -GGADYSFECIGDT-------------------------GMITTALQSCCDGW-GLAVTLGVPKLKPEVA 297 (371)
Q Consensus 255 -gg~dvVid~~g~~-------------------------~~l~~~~~~l~~~~-G~~v~~g~~~~~~~~~ 297 (371)
|++|+.++..|-. ...+.++..|++.. |+++.+++..+...++
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P 158 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLP 158 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCC
Confidence 4899999987742 12345555565543 9999998877644433
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.014 Score=51.78 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-H----cCCc-eE--eCCCCCCchHHHHHHH-Hh
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A----FGVT-EF--LNPNDNNEPVQQVIKR-IT 253 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~----lg~~-~v--i~~~~~~~~~~~~v~~-~~ 253 (371)
...+.++||+|| +++|...+..+...|+ +++.+.|+.+|++.+. + .|.. .+ +|.. +.+-...+.. +.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs--~~~~~~~l~~~l~ 79 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLS--DPEALERLEDELK 79 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCC--ChhHHHHHHHHHH
Confidence 356789999997 8999999999999999 9999999999988772 2 3332 23 3655 3333334433 32
Q ss_pred -CC-CccEEEEcCCC
Q 017460 254 -DG-GADYSFECIGD 266 (371)
Q Consensus 254 -~g-g~dvVid~~g~ 266 (371)
.+ .+|+.+++.|-
T Consensus 80 ~~~~~IdvLVNNAG~ 94 (265)
T COG0300 80 ERGGPIDVLVNNAGF 94 (265)
T ss_pred hcCCcccEEEECCCc
Confidence 23 79999999985
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.022 Score=49.81 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=52.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC---CceE--eCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG---VTEF--LNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg---~~~v--i~~~~~~~~~~~~v~~~~~--gg 256 (371)
.+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ +++. -.+. .|..+ ...+.+.+.+... ++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRD-EADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence 4688999986 9999999888888899 899999988776554 3332 1122 24331 3334444444322 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 83 ~d~vi~~ag~ 92 (237)
T PRK07326 83 LDVLIANAGV 92 (237)
T ss_pred CCEEEECCCC
Confidence 9999998763
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.01 Score=50.13 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=59.1
Q ss_pred CCCEEEEEc-c-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCce-EeCCCC--CCchHHHHHHHHhCCCccE
Q 017460 186 KGSTVVIFG-L-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-FLNPND--NNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 186 ~~~~VlI~G-a-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~-vi~~~~--~~~~~~~~v~~~~~gg~dv 259 (371)
+...|||.| + |++|.+.+.-...-|+ .|+++.|+-++...+. ++|... =+|..+ +-..+..+++..++|+.|+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~ 84 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL 84 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence 456799997 4 9999998888888899 9999999988877764 777632 233332 1233566777777889999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
.++..|-
T Consensus 85 L~NNAG~ 91 (289)
T KOG1209|consen 85 LYNNAGQ 91 (289)
T ss_pred EEcCCCC
Confidence 9997764
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0047 Score=51.32 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCC--------------CchHHHHHHH
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDN--------------NEPVQQVIKR 251 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~--------------~~~~~~~v~~ 251 (371)
..+|+|+|+|.+|+-|+.+++.+|+ +|++.+..+++.+..+.++...+. .+.+. ...+...+.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 4789999999999999999999999 999999999999888888875432 21110 1223333333
Q ss_pred HhCCCccEEEEcCC--C---hH-HHHHHHHHhccCCceEEEecC
Q 017460 252 ITDGGADYSFECIG--D---TG-MITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 252 ~~~gg~dvVid~~g--~---~~-~l~~~~~~l~~~~G~~v~~g~ 289 (371)
... .+|+||-+.- + +. .-++.++.++++ ..++.+.-
T Consensus 99 ~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~ 140 (168)
T PF01262_consen 99 FIA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISC 140 (168)
T ss_dssp HHH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTG
T ss_pred HHh-hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEe
Confidence 221 4788885331 1 11 135667888886 77777754
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.021 Score=56.24 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=67.2
Q ss_pred hhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH---------cCC-----ceE--eCCCCCC
Q 017460 180 NVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA---------FGV-----TEF--LNPNDNN 242 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~---------lg~-----~~v--i~~~~~~ 242 (371)
...+.+.|.+|||+|+ |.+|...++.+...|+ +|+++.++.++.+.+.+ .|. ..+ .|.. +
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt--D 149 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE--K 149 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC--C
Confidence 4566778999999986 9999999999988999 99999999887754421 121 112 2443 1
Q ss_pred chHHHHHHHHhCCCccEEEEcCCChH---------------HHHHHHHHhcc-CCceEEEecCCC
Q 017460 243 EPVQQVIKRITDGGADYSFECIGDTG---------------MITTALQSCCD-GWGLAVTLGVPK 291 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~~g~~~---------------~l~~~~~~l~~-~~G~~v~~g~~~ 291 (371)
.+.+.+.. +++|+||.+.|... ....+++.+.. +.++||.+++..
T Consensus 150 ---~esI~~aL-ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig 210 (576)
T PLN03209 150 ---PDQIGPAL-GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG 210 (576)
T ss_pred ---HHHHHHHh-cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence 12233333 37999999987521 11223333332 226899887654
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.018 Score=47.68 Aligned_cols=97 Identities=19% Similarity=0.296 Sum_probs=63.5
Q ss_pred hhcchhhhhHHhHhhhhcCCCCCCEEEEEccCh-HHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 165 CLLSCGLSAGLGAAWNVADISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 165 a~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~-~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
...|+...++...+.+...--.+.+|||+|+|. +|..++..++..|+ +|+++.++.+.
T Consensus 22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~-------------------- 80 (168)
T cd01080 22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKN-------------------- 80 (168)
T ss_pred CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchh--------------------
Confidence 444544444444443333345789999999986 69989999999999 88888765321
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
..+.+. .+|+||.+++.+..+.. +.++++ -.++.++...
T Consensus 81 -l~~~l~-----~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~pr 119 (168)
T cd01080 81 -LKEHTK-----QADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGINR 119 (168)
T ss_pred -HHHHHh-----hCCEEEEcCCCCceecH--HHccCC-eEEEEccCCC
Confidence 111121 48999999998654333 346665 6677787654
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.019 Score=44.52 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=66.4
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc--eEeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT--EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~--~vi~~~~~~~~~~~~v~~~~ 253 (371)
....+.++++||-+|+|. |..+..+++..+..+|++++.++...+.++ .++.. .++..+ ... .... .
T Consensus 13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~--~~~---~~~~-~ 85 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD--APE---ALED-S 85 (124)
T ss_pred HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc--ccc---cChh-h
Confidence 445667788999999876 888888888775449999999998877764 34432 222211 111 0111 1
Q ss_pred CCCccEEEEcCCCh---HHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFECIGDT---GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid~~g~~---~~l~~~~~~l~~~~G~~v~~ 287 (371)
...+|+|+-..+.. ..++.+.+.|+++ |.++.-
T Consensus 86 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~ 121 (124)
T TIGR02469 86 LPEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLN 121 (124)
T ss_pred cCCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEE
Confidence 13799998755332 3578899999997 998764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.013 Score=46.25 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=63.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.++.+++++|.| .|...+..+...|. .|++++.+++..+.+++.+.+.+.+.-. +.++ .. .+++|+|+..-
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf-~p~~----~~--y~~a~liysir 85 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLF-NPNL----EI--YKNAKLIYSIR 85 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCC-CCCH----HH--HhcCCEEEEeC
Confidence 456889999999 78755656667898 9999999999999999988765553211 1111 11 12789999988
Q ss_pred CChHHHHHHHHHhccCCceEEEe
Q 017460 265 GDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
..++..+..++..++-...++..
T Consensus 86 pp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 86 PPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 87766555566554431344433
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.031 Score=48.80 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=51.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHH----HHHcCCceE-eCCCCCCchHHHHHHHHhC--CCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEK----AKAFGVTEF-LNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~----~~~lg~~~v-i~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
++.++||+|+ |.+|...++.+...|+ +|+.+++++++... +...+...+ .|..+ ..++.+.+..... +++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD-PQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC-HHHHHHHHHHHHHHhCCc
Confidence 3789999986 9999999998888899 89999997765432 222333322 24331 2233333333322 379
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+||.+.+.
T Consensus 84 d~vi~~ag~ 92 (239)
T PRK12828 84 DALVNIAGA 92 (239)
T ss_pred CEEEECCcc
Confidence 999998763
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=57.63 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=55.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
.+.++++|+|+|.|..|++++.+++..|+ +|++.+.++.+.+.++++|+.. +... ...+.+ ..+|+|+.
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~-~~~~----~~~~~l-----~~~D~VV~ 76 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVAT-VSTS----DAVQQI-----ADYALVVT 76 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEE-EcCc----chHhHh-----hcCCEEEE
Confidence 35578999999999999999999999999 9999998777776677888743 3221 111112 15799999
Q ss_pred cCCCh
Q 017460 263 CIGDT 267 (371)
Q Consensus 263 ~~g~~ 267 (371)
+.|-+
T Consensus 77 SpGi~ 81 (488)
T PRK03369 77 SPGFR 81 (488)
T ss_pred CCCCC
Confidence 88864
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.032 Score=51.89 Aligned_cols=79 Identities=27% Similarity=0.276 Sum_probs=53.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |++|...++.+...|+ +|+++.+++++.+.+ ++.|... ..|..+ .....+.+..... +
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d-~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD-AEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHHHCC
Confidence 4678999986 9999999999988999 899999988776543 3445432 235541 2233333333222 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|++.|.
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 79999998874
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.084 Score=45.33 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh-hHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE-KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.|.+|||+|+|.+|..-+..+...|+ +|++++.... ....+.+.|--..+... .. .+.+ .++++||-++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~~~---~~-~~dl-----~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLARC---FD-ADIL-----EGAFLVIAAT 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEeCC---CC-HHHh-----CCcEEEEECC
Confidence 36799999999999999999999999 8888866543 33333344422233221 11 1111 2799999999
Q ss_pred CChHHHHHHHHHhccCCceEEEecCCCCCCeeecch
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY 300 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~ 300 (371)
+.+..-.......+.. |..+...+......+-++.
T Consensus 78 ~d~~ln~~i~~~a~~~-~ilvn~~d~~e~~~f~~pa 112 (205)
T TIGR01470 78 DDEELNRRVAHAARAR-GVPVNVVDDPELCSFIFPS 112 (205)
T ss_pred CCHHHHHHHHHHHHHc-CCEEEECCCcccCeEEEee
Confidence 9864444555555554 7777665443334444443
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.019 Score=54.74 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=55.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
-.+.+|||+|+|.+|.+++..+...|+++++++.|+.+|.+.+ .+++...++. + +.+.... ..+|+||.|
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~-------~-~~l~~~l-~~aDiVI~a 249 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHY-------L-SELPQLI-KKADIIIAA 249 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEec-------H-HHHHHHh-ccCCEEEEC
Confidence 4578999999999999999999999987899999998876655 5565222222 2 1222222 258999999
Q ss_pred CCChHH
Q 017460 264 IGDTGM 269 (371)
Q Consensus 264 ~g~~~~ 269 (371)
++.+..
T Consensus 250 T~a~~~ 255 (414)
T PRK13940 250 VNVLEY 255 (414)
T ss_pred cCCCCe
Confidence 998653
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.12 Score=45.04 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=62.9
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHhCC
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vi~~~~~~~~~~~~v~~~~~g 255 (371)
...++++++||-.|+|. |..++.+++. |+.+|++++.+++..+.+++ .+.. .++.. ++.+. +..+
T Consensus 31 ~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~-----d~~~~---~~~~ 100 (223)
T PRK14967 31 AEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRG-----DWARA---VEFR 100 (223)
T ss_pred hcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC-----chhhh---ccCC
Confidence 34577889999999987 8888888875 55599999999987776543 3432 22222 22221 1223
Q ss_pred CccEEEEcCCC---------------------------hHHHHHHHHHhccCCceEEEe
Q 017460 256 GADYSFECIGD---------------------------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 256 g~dvVid~~g~---------------------------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.||+|+...+. ...+..+.+.|+++ |+++.+
T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~ 158 (223)
T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLV 158 (223)
T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEE
Confidence 89999875320 11345677888997 998765
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.043 Score=48.98 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=53.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
++.++||.|+ |++|.+.+..+...|+ +|++++++.++.+.+ ++++.. . ..|..+ ..++.+.+..... +.+|
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD-DAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4679999986 8999999999888999 999999988765544 445532 1 235442 2333343333322 3789
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 83 ~lv~~ag~ 90 (261)
T PRK08265 83 ILVNLACT 90 (261)
T ss_pred EEEECCCC
Confidence 99998873
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.017 Score=51.21 Aligned_cols=77 Identities=27% Similarity=0.425 Sum_probs=55.0
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHH---HHHHHhCCCccEEEE
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQ---VIKRITDGGADYSFE 262 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~---~v~~~~~gg~dvVid 262 (371)
+++||+|+ |.+|.+.++.+...|+ +|+++.+++++.+.++++++..+ .|..+ ...+.+ .+.....+.+|.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~~~~~ii~ 80 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD-PESVERAADEVIALTDNRLYGLFN 80 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC-HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 47999997 9999999999998999 99999999998888877776543 34431 222222 222223347888888
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.|.
T Consensus 81 ~ag~ 84 (256)
T PRK08017 81 NAGF 84 (256)
T ss_pred CCCC
Confidence 8763
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.046 Score=48.21 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=61.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh-hHHH----HHHcCCc-e--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCEK----AKAFGVT-E--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~-~~~~----~~~lg~~-~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |.+|...+..+...|+ +|+++.++.+ +.+. ++..+.. . ..|..+ .+.....+.+...
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD-EESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhC
Confidence 4678999986 9999999998888899 8888877653 3222 2233332 1 235441 2233333333322
Q ss_pred CCccEEEEcCCCh-------------------HHHHHHHHHhccCCceEEEecC
Q 017460 255 GGADYSFECIGDT-------------------GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 255 gg~dvVid~~g~~-------------------~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+++|++|.+.+.. ..++.+...+... |+++.+++
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS 135 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS 135 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence 2689998877542 1334455555555 88888865
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.012 Score=54.73 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=54.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHh--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRIT--DG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~--~g 255 (371)
+++++||+|+ |++|.+.++.+...|+ +|+++.+++++++.+ ++.|.+. ..|..+ .+...+.+.+.. .+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD-ADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHhcC
Confidence 4689999986 8999999999999999 899999998877543 4456542 235441 222222222221 24
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|++.|.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 79999999873
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.021 Score=51.26 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
+...+.+++|+|+|+.+.+++..+...|+++|+++.|+++|.+.+. .++.. . .+.+ ....+|+||
T Consensus 118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----~-------~~~~---~~~~~dlvI 183 (272)
T PRK12550 118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----W-------RPDL---GGIEADILV 183 (272)
T ss_pred CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----c-------hhhc---ccccCCEEE
Confidence 3445678999999999999999999999978999999998877663 34311 1 0111 112689999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
+|+..
T Consensus 184 NaTp~ 188 (272)
T PRK12550 184 NVTPI 188 (272)
T ss_pred ECCcc
Confidence 99863
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.021 Score=43.10 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=59.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+|.+|||+|+|.+|..-++.+...|+ +|+++.... +.++ +.-..... .+.+. -.++++|+-+++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~~~-----~~~~~-----l~~~~lV~~at~ 69 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLIRR-----EFEED-----LDGADLVFAATD 69 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEEES-----S-GGG-----CTTESEEEE-SS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHHhh-----hHHHH-----HhhheEEEecCC
Confidence 47899999999999999999999999 999997775 2222 22122211 22111 127999999999
Q ss_pred ChHHHHHHHHHhccCCceEEEecCCCCCCee
Q 017460 266 DTGMITTALQSCCDGWGLAVTLGVPKLKPEV 296 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~ 296 (371)
.+..-+...+..+.. |..+.........++
T Consensus 70 d~~~n~~i~~~a~~~-~i~vn~~D~p~~~dF 99 (103)
T PF13241_consen 70 DPELNEAIYADARAR-GILVNVVDDPELCDF 99 (103)
T ss_dssp -HHHHHHHHHHHHHT-TSEEEETT-CCCCSE
T ss_pred CHHHHHHHHHHHhhC-CEEEEECCCcCCCeE
Confidence 875555555555655 888888665443333
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.021 Score=49.67 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=52.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.+++|+|+ |++|...+..+...|+ +|+++++++++.+.+++++-.. .+|..+ .+.+.+.+..+..+++|++|.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND-PASLDQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC-HHHHHHHHHHhhcCCCCEEEEcC
Confidence 46899986 9999998888888899 9999999888776665543222 234431 22333333434334899999887
Q ss_pred CC
Q 017460 265 GD 266 (371)
Q Consensus 265 g~ 266 (371)
|.
T Consensus 80 g~ 81 (225)
T PRK08177 80 GI 81 (225)
T ss_pred cc
Confidence 53
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=52.74 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=72.2
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
..+|.|+|.|.+|.-|+.+|.-+|+ +|...+.+.+|+..+..+-..+ +.-++ ..++.+.+. +.|++|.++
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st--~~~iee~v~-----~aDlvIgaV 239 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYST--PSNIEEAVK-----KADLVIGAV 239 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcC--HHHHHHHhh-----hccEEEEEE
Confidence 3468888999999999999999999 9999999999999987644333 22222 445555544 579998865
Q ss_pred C--Ch----HHHHHHHHHhccCCceEEEecCCCC
Q 017460 265 G--DT----GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 265 g--~~----~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
= +. -..++.++.++++ +.++.+....+
T Consensus 240 LIpgakaPkLvt~e~vk~MkpG-sVivDVAiDqG 272 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMKPG-SVIVDVAIDQG 272 (371)
T ss_pred EecCCCCceehhHHHHHhcCCC-cEEEEEEEcCC
Confidence 2 21 1367889999997 99998876544
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.012 Score=53.33 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=52.1
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce-EeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
++.++||+|+|+.+.+++..+..+|+++++++.|+.+|.+.+ ++++... +.... ..+.+.... ..+|+||+|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~-----~~~~~~~~~-~~~DiVIna 197 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE-----GDSGGLAIE-KAAEVLVST 197 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc-----chhhhhhcc-cCCCEEEEC
Confidence 578999999999999999999999998999999998887766 3443211 11110 001111111 268999999
Q ss_pred CCCh
Q 017460 264 IGDT 267 (371)
Q Consensus 264 ~g~~ 267 (371)
++..
T Consensus 198 Tp~g 201 (282)
T TIGR01809 198 VPAD 201 (282)
T ss_pred CCCC
Confidence 8753
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.1 Score=44.65 Aligned_cols=104 Identities=14% Similarity=0.045 Sum_probs=62.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhh-HHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK-CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.|.+|||+|+|.+|...+..+...|+ +|+++.....+ ...+.+-+.-..... .+.+. .-.++|+||-++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~~~i~~~~~-----~~~~~----~l~~adlViaaT 78 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEEGKIRWKQK-----EFEPS----DIVDAFLVIAAT 78 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhCCCEEEEec-----CCChh----hcCCceEEEEcC
Confidence 47899999999999999988888998 88888654322 222222222112111 11110 002789999999
Q ss_pred CChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG 301 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~ 301 (371)
+++. ++..+...+.. +.++...+......+-++..
T Consensus 79 ~d~e-lN~~i~~~a~~-~~lvn~~d~~~~~~f~~Pa~ 113 (202)
T PRK06718 79 NDPR-VNEQVKEDLPE-NALFNVITDAESGNVVFPSA 113 (202)
T ss_pred CCHH-HHHHHHHHHHh-CCcEEECCCCccCeEEEeeE
Confidence 9864 56555555554 66776655444344444433
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0094 Score=51.55 Aligned_cols=99 Identities=21% Similarity=0.353 Sum_probs=66.4
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~--vi~~~~~~~~~~~~v~~ 251 (371)
.+...++++++||-+|+|. |..++.+++..+. .+|++++.+++-.+.+++ +|... ++..+ .. ..
T Consensus 69 ~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd--~~------~~ 139 (212)
T PRK13942 69 CELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD--GT------LG 139 (212)
T ss_pred HHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC--cc------cC
Confidence 3566789999999999874 6667777777653 399999999987766643 45432 22211 00 01
Q ss_pred HhC-CCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 252 ITD-GGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 252 ~~~-gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
+.. +.||+|+-........+..++.|+++ |+++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence 112 37999876554445567888899998 998764
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.054 Score=52.60 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=50.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh--hHH-HHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--KCE-KAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~--~~~-~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
++.++||+|+ |++|...++.+...|+ +|+++++... +.+ ...+++... .+|..+ .......+..... +++|
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id 286 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA-PDAPARIAEHLAERHGGLD 286 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHHHHhCCCCC
Confidence 5789999986 9999999999989999 8888877432 222 234455432 345541 2222232222222 2799
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
++|.+.|
T Consensus 287 ~vi~~AG 293 (450)
T PRK08261 287 IVVHNAG 293 (450)
T ss_pred EEEECCC
Confidence 9999988
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0072 Score=58.69 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=63.1
Q ss_pred hhcCCCCCCEEE----EEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVV----IFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~Vl----I~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~ 253 (371)
...++++|+++| |+| +|++|.+++|+++..|+ .|+++.+.+.+....+..+.. .++|.+ ...+.+.+..++
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~l~~~~ 103 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDAT--GITDPADLKALY 103 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECC--CCCCHHHHHHHH
Confidence 456678888887 776 59999999999999999 999987766655444444444 355554 333344443321
Q ss_pred CCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 254 DGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 254 ~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
..++..++.+.++ |+++.++...
T Consensus 104 --------------~~~~~~l~~l~~~-griv~i~s~~ 126 (450)
T PRK08261 104 --------------EFFHPVLRSLAPC-GRVVVLGRPP 126 (450)
T ss_pred --------------HHHHHHHHhccCC-CEEEEEcccc
Confidence 2455667777776 8888877643
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.019 Score=50.47 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=52.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
++.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+ ..++... ..|.. +.. .+.+... +++|++
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~--~~~---~v~~~~~~~~~~d~v 81 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVG--DDA---AIRAALAAAGAFDGL 81 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCC--CHH---HHHHHHHHhCCCCEE
Confidence 4678999986 8999999999999999 899999988777655 3345432 23544 222 2222222 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|.+.|.
T Consensus 82 i~~ag~ 87 (245)
T PRK07060 82 VNCAGI 87 (245)
T ss_pred EECCCC
Confidence 998874
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0093 Score=45.56 Aligned_cols=91 Identities=25% Similarity=0.261 Sum_probs=60.8
Q ss_pred CCCEEEEEccChHHHHHHHHHH-HcCCCEEEEEcCChhhHHHHHHc----CC-ce--EeCCCCCCchHHHHHHHHhCCCc
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAK-ARGASRIIGVDTNPEKCEKAKAF----GV-TE--FLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~-~~G~~~vi~~~~~~~~~~~~~~l----g~-~~--vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
|+.+||-+|+|. |..++.+++ ..++ +|++++.+++..+.+++. +. +. ++.. ++ . ......++|
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-----d~-~-~~~~~~~~~ 71 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQG-----DA-E-FDPDFLEPF 71 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES-----CC-H-GGTTTSSCE
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC-----cc-c-cCcccCCCC
Confidence 578999999875 777778887 4677 999999999988887542 22 11 2221 12 0 011112279
Q ss_pred cEEEEcC-CCh---------HHHHHHHHHhccCCceEEE
Q 017460 258 DYSFECI-GDT---------GMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 258 dvVid~~-g~~---------~~l~~~~~~l~~~~G~~v~ 286 (371)
|+|+... ... ..++...+.|+++ |+++.
T Consensus 72 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi 109 (112)
T PF12847_consen 72 DLVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVI 109 (112)
T ss_dssp EEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred CEEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEE
Confidence 9999877 221 1377888899997 98875
|
... |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.054 Score=46.83 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=65.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh-------------------hHHHH----HHcCCc-eEeCCCCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE-------------------KCEKA----KAFGVT-EFLNPNDN 241 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~-------------------~~~~~----~~lg~~-~vi~~~~~ 241 (371)
+..+|+|+|.|++|-+++..+-..|+.++..++-++- |.+.+ ++.... ++.-.+
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~-- 106 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN-- 106 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH--
Confidence 3578999999999999999999999988888875441 11111 222221 121111
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHH-HHHHHHHhccCCceEEEecCCCC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGM-ITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~-l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
..-..+.+.++...++|+||||..+-.. ...+..|.+.. -.+|..+...+
T Consensus 107 ~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~Gag~ 157 (263)
T COG1179 107 DFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMGAGG 157 (263)
T ss_pred hhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeeccccC
Confidence 1122444556666699999999975322 44555677764 67777765544
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.021 Score=52.16 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=55.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC--ce-E--eCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV--TE-F--LNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~--~~-v--i~~~~~~~~~~~~v~~~~~--gg 256 (371)
++.++||+|+ |++|.+.++.+...|+ +|+++.++.++.+.+ ++++. .. . .|..+ .....+.+.+... ++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD-LAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence 4789999986 9999999999999999 999999988876654 44542 11 1 45541 2333333333322 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|++.|.
T Consensus 86 id~vI~nAG~ 95 (296)
T PRK05872 86 IDVVVANAGI 95 (296)
T ss_pred CCEEEECCCc
Confidence 9999999884
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.026 Score=48.55 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=65.3
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHH----HcCCc---eEeCCCCCCchHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAK----AFGVT---EFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~----~lg~~---~vi~~~~~~~~~~~~v~~ 251 (371)
+...++++++||-+|+|. |..++.+++..+ ..+|++++.+++-.+.++ +++.. .++..+ ..+.+.
T Consensus 66 ~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d-----~~~~~~- 138 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD-----GKRGLE- 138 (205)
T ss_pred HhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC-----cccCCc-
Confidence 566788999999999864 667777777664 238999999988666553 34532 222211 111110
Q ss_pred HhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 252 ITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 252 ~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
..+.||.|+-+.......+..++.|+++ |+++..
T Consensus 139 -~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~ 172 (205)
T PRK13944 139 -KHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP 172 (205)
T ss_pred -cCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence 1237999987766555567788999998 998763
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.027 Score=50.05 Aligned_cols=79 Identities=27% Similarity=0.387 Sum_probs=53.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
++++|||+|+ |++|...++.+...|+ +|+++++++.+.+.+ .+++... ..|..+ ...+.+.+.+... +++|++
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v 83 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD-EDAVNALFDTAAETYGSVDIA 83 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 4789999986 9999999999988999 999999988776544 4454422 234441 2233333333322 378999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|.+.|.
T Consensus 84 i~~ag~ 89 (255)
T PRK06057 84 FNNAGI 89 (255)
T ss_pred EECCCc
Confidence 998863
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0092 Score=53.64 Aligned_cols=45 Identities=31% Similarity=0.426 Sum_probs=40.2
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
.+++++||+|+|+.+.+++.-++..|+++++++.|+.+|.+.+.+
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 358999999999999999999999998899999999999777643
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.051 Score=49.00 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=63.1
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHhCCCcc
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
-.++|.+||=+|+|+ |.++|..+ .+|+++|++++.++--.+.++ ..+.+..+... .+ .......++.||
T Consensus 159 ~~~~g~~vlDvGcGS-GILaIAa~-kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~----~~-~~~~~~~~~~~D 231 (300)
T COG2264 159 LLKKGKTVLDVGCGS-GILAIAAA-KLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK----GF-LLLEVPENGPFD 231 (300)
T ss_pred hhcCCCEEEEecCCh-hHHHHHHH-HcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcc----cc-cchhhcccCccc
Confidence 356899999998764 55555444 468879999999987655553 34544211000 00 011112224899
Q ss_pred EEEEcCCCh---HHHHHHHHHhccCCceEEEecCCCC
Q 017460 259 YSFECIGDT---GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 259 vVid~~g~~---~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+|+-.+=.+ ...+.....++++ |++++.|....
T Consensus 232 vIVANILA~vl~~La~~~~~~lkpg-g~lIlSGIl~~ 267 (300)
T COG2264 232 VIVANILAEVLVELAPDIKRLLKPG-GRLILSGILED 267 (300)
T ss_pred EEEehhhHHHHHHHHHHHHHHcCCC-ceEEEEeehHh
Confidence 998766332 1345677789997 99999986644
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.071 Score=46.56 Aligned_cols=91 Identities=22% Similarity=0.321 Sum_probs=60.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCC--EEEEEcCC----hhh--------HHHHHHcCCceEeCCCCCCchHHHHHH
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGAS--RIIGVDTN----PEK--------CEKAKAFGVTEFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~--~vi~~~~~----~~~--------~~~~~~lg~~~vi~~~~~~~~~~~~v~ 250 (371)
-++.+++|+|+|+.|.+++..+...|++ +++.++++ .++ .++++.++... . ..++.+.+.
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~-----~~~l~~~l~ 96 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T-----GGTLKEALK 96 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c-----cCCHHHHHh
Confidence 4578999999999999999988889997 89999998 443 33445443211 1 112333332
Q ss_pred HHhCCCccEEEEcCCChHHH-HHHHHHhccCCceEEEec
Q 017460 251 RITDGGADYSFECIGDTGMI-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 251 ~~~~gg~dvVid~~g~~~~l-~~~~~~l~~~~G~~v~~g 288 (371)
++|++|.+++.. .+ +..++.++++ ..++.+.
T Consensus 97 -----~~dvlIgaT~~G-~~~~~~l~~m~~~-~ivf~ls 128 (226)
T cd05311 97 -----GADVFIGVSRPG-VVKKEMIKKMAKD-PIVFALA 128 (226)
T ss_pred -----cCCEEEeCCCCC-CCCHHHHHhhCCC-CEEEEeC
Confidence 489999999732 33 4566777775 5555544
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0065 Score=52.24 Aligned_cols=102 Identities=22% Similarity=0.331 Sum_probs=65.7
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCC-EEEEEcCChhhHHHH----HHcCCceE-eCCCCCCchHHHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKA----KAFGVTEF-LNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~-~vi~~~~~~~~~~~~----~~lg~~~v-i~~~~~~~~~~~~v~~~ 252 (371)
.+...+++|++||-+|+|+ |..++-+++..|.. +|+.+++.++-.+.+ +.+|...+ +... + . ..-+
T Consensus 65 l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g--d-g----~~g~ 136 (209)
T PF01135_consen 65 LEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVG--D-G----SEGW 136 (209)
T ss_dssp HHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES----G----GGTT
T ss_pred HHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEc--c-h----hhcc
Confidence 3667799999999999874 78888888877743 689999988754444 55676432 1111 1 1 0111
Q ss_pred hC-CCccEEEEcCCChHHHHHHHHHhccCCceEEE-ecC
Q 017460 253 TD-GGADYSFECIGDTGMITTALQSCCDGWGLAVT-LGV 289 (371)
Q Consensus 253 ~~-gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~-~g~ 289 (371)
.. +.||.|+-+.+.+..-...++.|+++ |++|. ++.
T Consensus 137 ~~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~pi~~ 174 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAPIGQ 174 (209)
T ss_dssp GGG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEEESS
T ss_pred ccCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEEEcc
Confidence 22 38999998887765556788899998 99887 554
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.09 Score=49.68 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=66.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHH-HHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
-.+.++||+|+|-+|..++..+...|+.+|+...|+.+|... ++++|+. ++..+ +..+.+. .+|+||.+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~----el~~~l~-----~~DvViss 245 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALE----ELLEALA-----EADVVISS 245 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHH----HHHHhhh-----hCCEEEEe
Confidence 367899999999999999999999998899999999998765 4789854 33221 1222221 58999999
Q ss_pred CCChHH---HHHHHHHhccCCc-eEEEecCCCC
Q 017460 264 IGDTGM---ITTALQSCCDGWG-LAVTLGVPKL 292 (371)
Q Consensus 264 ~g~~~~---l~~~~~~l~~~~G-~~v~~g~~~~ 292 (371)
++.+.. .......++.... -++.++.+..
T Consensus 246 Tsa~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 246 TSAPHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred cCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence 987642 2233334444323 3566766543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0098 Score=53.46 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=60.3
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc---eEeCCCCCCchHHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT---EFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~---~vi~~~~~~~~~~~~v~ 250 (371)
+.+++++++|++||-+|+| -|-+++.+++..|+ +|++++.+++..+.++ +.|.. .+... ++ +
T Consensus 54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~-----D~----~ 122 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQ-----DY----R 122 (273)
T ss_dssp HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES------G----G
T ss_pred HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe-----ec----c
Confidence 4578899999999999987 46677888888899 9999999999887763 45642 12211 11 1
Q ss_pred HHhCCCccEEEE-----cCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 251 RITDGGADYSFE-----CIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 251 ~~~~gg~dvVid-----~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
++. +.||.|+. .+|. +..++.+.+.|+|+ |+++.-.
T Consensus 123 ~~~-~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~ 166 (273)
T PF02353_consen 123 DLP-GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQT 166 (273)
T ss_dssp G----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEE
T ss_pred ccC-CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEe
Confidence 111 17888865 3432 23477888899998 9987543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.074 Score=47.22 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH---cCCc-e--EeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA---FGVT-E--FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~---lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
++.++||+|+ |++|...+..+...|+ +|+++.+++++.+..++ .+.. . ..|..+ ...+...+.+... ++
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 83 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD-DAQCRDAVEQTVAKFGR 83 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhcCC
Confidence 3678999986 8999999888888999 88888888877644433 3432 1 224431 2223333333322 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 84 id~vi~~ag~ 93 (258)
T PRK08628 84 IDGLVNNAGV 93 (258)
T ss_pred CCEEEECCcc
Confidence 8999999883
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.11 Score=42.56 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=56.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|||+|+|.+|.--++.+...|+ +|.++. ++..+.+++++...+. .+ .+.+. .-.++|+||-+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~~~-~~----~~~~~----dl~~a~lViaaT~ 79 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYITWK-QK----TFSND----DIKDAHLIYAATN 79 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcEEE-ec----ccChh----cCCCceEEEECCC
Confidence 47899999999999998888888999 888883 3333444455432222 11 11110 0127899999998
Q ss_pred ChHHHHHHHHHhccCCceEEEecC
Q 017460 266 DTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+++ ++..+...+.. +.++....
T Consensus 80 d~e-~N~~i~~~a~~-~~~vn~~d 101 (157)
T PRK06719 80 QHA-VNMMVKQAAHD-FQWVNVVS 101 (157)
T ss_pred CHH-HHHHHHHHHHH-CCcEEECC
Confidence 864 56666656554 44555433
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.049 Score=47.63 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=72.7
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~~g 255 (371)
......+|++||=+|+| .|-.|+.+++..|-.+|++++.++..++.+++ .|... +..- ..-++.+. +.+.
T Consensus 45 ~~~~~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv---~~dAe~LP-f~D~ 118 (238)
T COG2226 45 SLLGIKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFV---VGDAENLP-FPDN 118 (238)
T ss_pred HhhCCCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEE---EechhhCC-CCCC
Confidence 44556689999988776 48899999999986699999999998888754 23221 1110 00111111 2223
Q ss_pred CccEEEEcCCC------hHHHHHHHHHhccCCceEEEecCCCC
Q 017460 256 GADYSFECIGD------TGMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 256 g~dvVid~~g~------~~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
.||+|.-+.|- +..|++..+.|+|+ |+++.+.....
T Consensus 119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~p 160 (238)
T COG2226 119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSKP 160 (238)
T ss_pred ccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCCC
Confidence 89999776663 24689999999998 99998876543
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.031 Score=49.59 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=53.6
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCC-ceE--eCCCCCCchHHHHHHHHh--C
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGV-TEF--LNPNDNNEPVQQVIKRIT--D 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~-~~v--i~~~~~~~~~~~~v~~~~--~ 254 (371)
..++++||+|+ |.+|...+..+...|+ +|+++.+++++.+.+.+ .+. ..+ .|..+ ..++.+.+.+.. .
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD-YQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHhc
Confidence 34789999986 9999999999988999 89999999887655422 121 122 24431 233434333332 1
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 378999998873
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0075 Score=54.60 Aligned_cols=96 Identities=23% Similarity=0.372 Sum_probs=58.1
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCce-E-eCCCCCCchHHHHHHHHhCCCc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE-F-LNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~-v-i~~~~~~~~~~~~v~~~~~gg~ 257 (371)
..+|++||=+|+|+ |.+++..++ +|+++|++++.++.-.+.+++ .|... + +... .+ ...+.|
T Consensus 159 ~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~---~~-------~~~~~~ 226 (295)
T PF06325_consen 159 VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS---ED-------LVEGKF 226 (295)
T ss_dssp SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT---SC-------TCCS-E
T ss_pred ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe---cc-------cccccC
Confidence 67889999998653 444444444 588899999999976655533 44321 2 1111 11 112489
Q ss_pred cEEEEcCCChHH---HHHHHHHhccCCceEEEecCCCC
Q 017460 258 DYSFECIGDTGM---ITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 258 dvVid~~g~~~~---l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
|+|+-..-.+-. +....+.++++ |.+++.|....
T Consensus 227 dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSGIl~~ 263 (295)
T PF06325_consen 227 DLVVANILADVLLELAPDIASLLKPG-GYLILSGILEE 263 (295)
T ss_dssp EEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEEEEGG
T ss_pred CEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEccccHH
Confidence 999977765422 33445578887 99999887644
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.064 Score=49.44 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=61.6
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|||+|+ |.+|...+..+...|. +|.+++|+.++...+...+++.+. |.. +. +.+.+... ++|+||.+++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~--d~---~~l~~al~-g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLS--LP---ETLPPSFK-GVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCC--CH---HHHHHHHC-CCCEEEECCCC
Confidence 6999986 9999999999888998 999999988776666666665433 433 21 22333332 68999998753
Q ss_pred hH------------HHHHHHHHhccC-CceEEEecCC
Q 017460 267 TG------------MITTALQSCCDG-WGLAVTLGVP 290 (371)
Q Consensus 267 ~~------------~l~~~~~~l~~~-~G~~v~~g~~ 290 (371)
.. .....++.++.. -.+++.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 11 112344444443 1378877664
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.035 Score=49.85 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=53.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC-Cce-EeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG-VTE-FLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg-~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++ +.. ..|..+ .+.+.+.+..... +++|++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l 82 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD-PASFAAFLDAVEADLGPIDVL 82 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 578999986 9999999988888899 899999988877654 4454 222 235542 2333333333322 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|.+.|.
T Consensus 83 i~~ag~ 88 (273)
T PRK07825 83 VNNAGV 88 (273)
T ss_pred EECCCc
Confidence 998873
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.075 Score=46.79 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+ ++.+.. . ..|..+ .......+.+... +
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD-PASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4788999986 9999999999988999 899998888765543 233332 1 224441 2222222222222 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 79999999875
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.031 Score=49.54 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=52.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc----eEeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT----EFLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~----~vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
++.++||+|+ |.+|...++.+...|+ +|+.+.++++..+...++... ...|..+ ...+...+.+... +++|
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~~d 91 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD-SQSVEAAVAAVISAFGRID 91 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4679999986 9999999888888999 899999887765555444221 1234431 2233333333322 3789
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 92 ~vi~~ag~ 99 (255)
T PRK06841 92 ILVNSAGV 99 (255)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.093 Score=47.09 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=49.8
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc--e--EeCCCCCCchHHHHHHHHhC--CCc
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT--E--FLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~--~--vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
+++|+|+ |++|...++.+...|+ +|+++.+++++.+.+ +..+.. . ..|..+ .....+.+.+... +++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD-YDAVAAFAADIHAAHGSM 79 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC-HHHHHHHHHHHHHhcCCC
Confidence 6899986 9999999998888999 899998887765443 333432 1 245541 2223333333322 379
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|++|.+.|.
T Consensus 80 d~lv~~ag~ 88 (272)
T PRK07832 80 DVVMNIAGI 88 (272)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.035 Score=49.60 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=72.6
Q ss_pred HhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc-e--E--eCCCCCCchH
Q 017460 175 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT-E--F--LNPNDNNEPV 245 (371)
Q Consensus 175 ~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~--v--i~~~~~~~~~ 245 (371)
+..+.++.++++|++||=+|+|- |.+++-.|+..|+ +|+.++-+++..+.++ +.|.. . + .|++ ++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r----d~ 134 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR----DF 134 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccc----cc
Confidence 33456889999999999999875 6678888888899 9999999999877664 45654 1 1 1332 11
Q ss_pred HHHHHHHhCCCccEEEE-----cCCC---hHHHHHHHHHhccCCceEEEecCCCC
Q 017460 246 QQVIKRITDGGADYSFE-----CIGD---TGMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 246 ~~~v~~~~~gg~dvVid-----~~g~---~~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
.+.||-|+. .+|. +.-+..+.+.|+++ |++.+......
T Consensus 135 --------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~ 180 (283)
T COG2230 135 --------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGP 180 (283)
T ss_pred --------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCC
Confidence 114676643 4554 23477888899998 99987765544
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.027 Score=54.94 Aligned_cols=77 Identities=23% Similarity=0.375 Sum_probs=55.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh---------------------hhHHHHHHcCCceEeCCCCCCch
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP---------------------EKCEKAKAFGVTEFLNPNDNNEP 244 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~---------------------~~~~~~~~lg~~~vi~~~~~~~~ 244 (371)
.+++|+|+|+|+.|+.++..++..|+ .|++++..+ ...+.++++|++..++... ..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v-~~~ 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV-GRD 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe-CCc
Confidence 57899999999999999999999999 888887654 2456678899876555431 011
Q ss_pred HHHHHHHHhCCCccEEEEcCCCh
Q 017460 245 VQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 245 ~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
+ .+..+. .++|.||.++|..
T Consensus 218 ~--~~~~~~-~~~D~vilAtGa~ 237 (467)
T TIGR01318 218 I--SLDDLL-EDYDAVFLGVGTY 237 (467)
T ss_pred c--CHHHHH-hcCCEEEEEeCCC
Confidence 1 111221 2699999999974
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.038 Score=49.25 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcc-C-hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----H-cCCceE----eCCCCCCchHHHHHHHH
Q 017460 184 ISKGSTVVIFGL-G-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----A-FGVTEF----LNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g-~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~-lg~~~v----i~~~~~~~~~~~~v~~~ 252 (371)
+.+++++||+|+ | ++|.+.++.+...|+ +|+++++++++.+... + ++...+ .|..+ ...+...+...
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~ 91 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS-EAQVDALIDAA 91 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC-HHHHHHHHHHH
Confidence 445789999986 6 799999999999999 8999988887665442 2 443222 25441 22333333332
Q ss_pred hC--CCccEEEEcCCC
Q 017460 253 TD--GGADYSFECIGD 266 (371)
Q Consensus 253 ~~--gg~dvVid~~g~ 266 (371)
.. +++|++|.+.|.
T Consensus 92 ~~~~g~id~li~~ag~ 107 (262)
T PRK07831 92 VERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHcCCCCEEEECCCC
Confidence 21 378999999984
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.052 Score=49.83 Aligned_cols=92 Identities=21% Similarity=0.416 Sum_probs=61.8
Q ss_pred CEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
.+|.|+|+|.+|.+.+..++..|. .+|+++++++++.+.+++.|....+.. +..+.+ ..+|+||.|+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~-----~~~~~~-----~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTT-----SAAEAV-----KGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecC-----CHHHHh-----cCCCEEEECCCH
Confidence 579999999999999888888774 389999999999888888875321111 111111 268999999986
Q ss_pred hHH---HHHHHHHhccCCceEEEecCC
Q 017460 267 TGM---ITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 267 ~~~---l~~~~~~l~~~~G~~v~~g~~ 290 (371)
... ++.....++++ ..++.+|+.
T Consensus 77 ~~~~~v~~~l~~~l~~~-~iv~dvgs~ 102 (307)
T PRK07502 77 GASGAVAAEIAPHLKPG-AIVTDVGSV 102 (307)
T ss_pred HHHHHHHHHHHhhCCCC-CEEEeCccc
Confidence 422 23333345564 556666553
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.045 Score=47.49 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=53.1
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+++||+|+ |.+|...++.+...|+ +|+++++++++.+.++..+.. ...|..+ ...+...+....++++|+++.+.|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~d~vi~~ag 79 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD-PASVAGLAWKLDGEALDAAVYVAG 79 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC-HHHHHHHHHHhcCCCCCEEEECCC
Confidence 46889985 9999998888878899 899999998887777666653 2335542 223333322332237999999876
Q ss_pred C
Q 017460 266 D 266 (371)
Q Consensus 266 ~ 266 (371)
.
T Consensus 80 ~ 80 (222)
T PRK06953 80 V 80 (222)
T ss_pred c
Confidence 4
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.049 Score=46.68 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=31.3
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
.+.+|+|+|+|++|..++..+...|+.++..++.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 35789999999999999999999999899999876
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.043 Score=50.71 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=53.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-H----cC-Cc---eEeCCCCCCchHHHHHHHHhCC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A----FG-VT---EFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~----lg-~~---~vi~~~~~~~~~~~~v~~~~~g 255 (371)
.|.++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+. + .+ .. ..+|..++..+..+.+.+..++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 4789999996 8999998888878899 8999999998876542 2 22 11 1234432113344455555555
Q ss_pred -CccEEEEcCC
Q 017460 256 -GADYSFECIG 265 (371)
Q Consensus 256 -g~dvVid~~g 265 (371)
.+|+++++.|
T Consensus 131 ~didilVnnAG 141 (320)
T PLN02780 131 LDVGVLINNVG 141 (320)
T ss_pred CCccEEEEecC
Confidence 6779999876
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.041 Score=44.76 Aligned_cols=74 Identities=24% Similarity=0.285 Sum_probs=50.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce-EeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
.++.+++|+|+|.+|...++.+...|..+|+++++++++.+.+ ++++... ..... +..+. -.++|+|+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~Dvvi~ 87 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYL----DLEEL-----LAEADLIIN 87 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeec----chhhc-----cccCCEEEe
Confidence 4578899999999999999888888644899999998876654 5555421 01111 11111 137999999
Q ss_pred cCCCh
Q 017460 263 CIGDT 267 (371)
Q Consensus 263 ~~g~~ 267 (371)
+++..
T Consensus 88 ~~~~~ 92 (155)
T cd01065 88 TTPVG 92 (155)
T ss_pred CcCCC
Confidence 99764
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.062 Score=48.31 Aligned_cols=95 Identities=19% Similarity=0.337 Sum_probs=65.2
Q ss_pred hcchhhhhHHhHhhhhcC-CCCCCEEEEEccCh-HHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVAD-ISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~-~~~~~~VlI~Gag~-~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||.....+..+ +..+ --.|.+|+|+|.|. +|.-++.++...|+ .|+++.+...
T Consensus 137 ~~PcTp~ai~~ll-~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~--------------------- 193 (286)
T PRK14175 137 FVPCTPLGIMEIL-KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSK--------------------- 193 (286)
T ss_pred CCCCcHHHHHHHH-HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch---------------------
Confidence 4555544444444 4444 24689999999865 99999999999999 8888865421
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
++.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|...
T Consensus 194 ~l~~~~~-----~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~~ 233 (286)
T PRK14175 194 DMASYLK-----DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNTP 233 (286)
T ss_pred hHHHHHh-----hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCCc
Confidence 1222222 58999999998765554 457886 7788888753
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.12 Score=45.90 Aligned_cols=77 Identities=22% Similarity=0.228 Sum_probs=52.2
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cC-C--c-eEeCCCCCCchHHHHHHHHh---CCCcc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FG-V--T-EFLNPNDNNEPVQQVIKRIT---DGGAD 258 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg-~--~-~vi~~~~~~~~~~~~v~~~~---~gg~d 258 (371)
.++||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+ ++ . . ..+|..+ ...+.+.+.... .+++|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD-RAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCC
Confidence 46899986 9999999998888899 99999998887766533 32 1 1 1235542 233333333322 34899
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++.+.|.
T Consensus 80 ~vi~~ag~ 87 (260)
T PRK08267 80 VLFNNAGI 87 (260)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.032 Score=56.74 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=56.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh---------------------hHHHHHHcCCceEeCCCCC-Cc
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE---------------------KCEKAKAFGVTEFLNPNDN-NE 243 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~---------------------~~~~~~~lg~~~vi~~~~~-~~ 243 (371)
.+++|+|+|+|+.|+.++..+...|+ +|+++++.+. +.+.++++|++..++..-. +.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 48999999999999999999999999 8999987652 4566788998766654310 11
Q ss_pred hHHHHHHHHhCCCccEEEEcCCCh
Q 017460 244 PVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
.+ ..+. .++|.||.++|..
T Consensus 388 ~~----~~l~-~~~DaV~latGa~ 406 (639)
T PRK12809 388 TF----SDLT-SEYDAVFIGVGTY 406 (639)
T ss_pred CH----HHHH-hcCCEEEEeCCCC
Confidence 22 1221 2699999999863
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.039 Score=49.32 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=52.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc-eE--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT-EF--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |++|...++.+...|+ +|+.+++++++.+.+. ..+.. .+ .|..+ .......+.+... +
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH-PEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4789999986 8999999999988999 9999999887765442 22322 12 34441 2223223333222 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 87 ~id~vi~~Ag~ 97 (263)
T PRK07814 87 RLDIVVNNVGG 97 (263)
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.031 Score=49.28 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=52.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC--Cc---eEeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG--VT---EFLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg--~~---~vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ ..+. .. ...|..+ ...+...+.+... +.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD-EADVEAAVAAALERFGS 81 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 4678999986 9999999988888899 899999998776554 2222 21 1224431 2334343333322 27
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|+||.+.|.
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.033 Score=49.56 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=53.6
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCc----eEeCCCCCCchHHHHHHHHhC--C
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVT----EFLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~----~vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.-++.++||+|+ |.+|...+..+...|+ +|+.+.+++++.+.+.+ +.-. ...|..+ .....+.+.+... +
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD-PAQVERVFDTAVERFG 85 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 356789999986 9999999999989999 89999998776665533 2211 1234431 2223232332211 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+||.+.|.
T Consensus 86 ~~d~vi~~ag~ 96 (264)
T PRK12829 86 GLDVLVNNAGI 96 (264)
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.042 Score=49.06 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
++.++||+|+ +++|...++.+...|+ +|+.+++++++.+.+. +++.. . ..|..+ ..+....+.+... +.+|
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 82 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS-YADNQRAVDQTVDAFGKLD 82 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHhcCCCC
Confidence 4788999986 8999999999888999 8999999888776654 34321 1 224431 2333444444322 3799
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
++|.+.|
T Consensus 83 ~li~~ag 89 (263)
T PRK06200 83 CFVGNAG 89 (263)
T ss_pred EEEECCC
Confidence 9999887
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.041 Score=49.11 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
++.++||+|+ |++|...++.+...|+ +|++++++.++.+.+.+ .+.. . ..|..+ .....+.+.+... +.+|
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 81 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS-LDDHKEAVARCVAAFGKID 81 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence 4788999986 8999999998888999 99999998877666644 3321 1 124431 2334444444332 3789
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
++|.+.|
T Consensus 82 ~li~~Ag 88 (262)
T TIGR03325 82 CLIPNAG 88 (262)
T ss_pred EEEECCC
Confidence 9999876
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.038 Score=46.66 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=60.6
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHhCCCcc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
++++.+||-+|+|. |..++.+++.. ++ +|++++.+++..+.++ +.+.+.+ ... ..+..+ +.. .+.+|
T Consensus 43 l~~g~~VLDiGcGt-G~~al~la~~~~~~-~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~--~~d~~~-~~~--~~~fD 114 (187)
T PRK00107 43 LPGGERVLDVGSGA-GFPGIPLAIARPEL-KVTLVDSLGKKIAFLREVAAELGLKNV-TVV--HGRAEE-FGQ--EEKFD 114 (187)
T ss_pred cCCCCeEEEEcCCC-CHHHHHHHHHCCCC-eEEEEeCcHHHHHHHHHHHHHcCCCCE-EEE--eccHhh-CCC--CCCcc
Confidence 45588999998764 55566666544 55 9999999998776663 4554321 111 112211 111 23899
Q ss_pred EEEEcCCC--hHHHHHHHHHhccCCceEEEec
Q 017460 259 YSFECIGD--TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 259 vVid~~g~--~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+|+-.... ...++.+.+.|+++ |+++.+-
T Consensus 115 lV~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~ 145 (187)
T PRK00107 115 VVTSRAVASLSDLVELCLPLLKPG-GRFLALK 145 (187)
T ss_pred EEEEccccCHHHHHHHHHHhcCCC-eEEEEEe
Confidence 99864322 24577888999998 9998773
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.1 Score=51.60 Aligned_cols=105 Identities=25% Similarity=0.310 Sum_probs=69.1
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCce---EeCCCCCCchHHHHHHHHhC--CCc
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE---FLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
..+.++||+|+ +++|.+.++.+...|+ +|+.+.+++++.+.+. +++... ..|..+ .+.....+.+... +.+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD-EAAVESAFAQIQARWGRL 344 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence 35788999986 8999999998888999 9999999888776664 355422 235441 2334444444332 379
Q ss_pred cEEEEcCCCh--------------------------HHHHHHHHHhccCCceEEEecCCCC
Q 017460 258 DYSFECIGDT--------------------------GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 258 dvVid~~g~~--------------------------~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
|++|.+.|.. ...+.++..+..+ |+++.+++...
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~~~ 404 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSIAS 404 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECchhh
Confidence 9999988741 0123334455565 89999876543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.021 Score=49.44 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=64.0
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHH----HcCCce--EeCCCCCCchHHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAK----AFGVTE--FLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~~--vi~~~~~~~~~~~~v~~~ 252 (371)
+...++++++||-+|+|. |..++.+++..+. .+|++++.+++-.+.++ ++|.+. ++..+ ..+ .+
T Consensus 71 ~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d-----~~~---~~ 141 (215)
T TIGR00080 71 ELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD-----GTQ---GW 141 (215)
T ss_pred HHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC-----ccc---CC
Confidence 556788999999998764 6666677776653 26999999998776653 455432 22111 100 01
Q ss_pred hC-CCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 253 TD-GGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 253 ~~-gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.. +.||+|+-........+..++.|+++ |+++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~ 176 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP 176 (215)
T ss_pred cccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence 11 37999875544444566788899997 998764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.13 Score=47.71 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=64.6
Q ss_pred CCCCEEEEEccChHHHHHHHHH-HHcCCCEEEEEcCChhhHHHHH-H----cCCceEeCCCCCCchHHHHHHHHhCCCcc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGA-KARGASRIIGVDTNPEKCEKAK-A----FGVTEFLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la-~~~G~~~vi~~~~~~~~~~~~~-~----lg~~~vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
+...+++|+|+|..|.+.+..+ ...++++|.+..+++++.+.+. + ++..... .. ++.+.+ ...|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~-~~----~~~~~~-----~~aD 194 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYV-VN----SADEAI-----EEAD 194 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEE-eC----CHHHHH-----hcCC
Confidence 4567899999999998776544 4668889999999998876553 2 3443111 21 233333 2689
Q ss_pred EEEEcCCChHHHHHHHHHhccCCceEEEecCCCC
Q 017460 259 YSFECIGDTGMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 259 vVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+|+.|+++...+- . ..++++ -.+..+|....
T Consensus 195 iVi~aT~s~~p~i-~-~~l~~G-~hV~~iGs~~p 225 (325)
T PRK08618 195 IIVTVTNAKTPVF-S-EKLKKG-VHINAVGSFMP 225 (325)
T ss_pred EEEEccCCCCcch-H-HhcCCC-cEEEecCCCCc
Confidence 9999998764332 3 788886 77778887643
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.042 Score=48.72 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=50.7
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc-e--EeCCCCCCchHHHHHHHHhCCCcc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-E--FLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~--vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
+.++||+|+ |.+|...++.+...|+ +|+++.+++++.+.+++ .+.. . ..|.. + .+.+.....+++|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~--~---~~~~~~~~~~~id 75 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLT--D---AIDRAQAAEWDVD 75 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCC--C---HHHHHHHhcCCCC
Confidence 457999986 9999999999999999 99999998876655432 3322 1 22443 1 1234444444899
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
++|.+.|
T Consensus 76 ~vi~~ag 82 (257)
T PRK09291 76 VLLNNAG 82 (257)
T ss_pred EEEECCC
Confidence 9999887
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.15 Score=45.17 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc----CCc---e-EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----GVT---E-FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g~~---~-vi~~~~~~~~~~~~v~~~~~- 254 (371)
++.++||+|+ |.+|...+..+...|+ +|+.+.+++++.+.+ +++ +.. . ..|..+ ...+.+.+.+...
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD-QESLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC-HHHHHHHHHHHHHH
Confidence 4788999986 8999999999988999 899998888776543 222 221 1 235542 2334344443322
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
+++|++|.+.+
T Consensus 81 ~~~id~vi~~A~ 92 (256)
T PRK09186 81 YGKIDGAVNCAY 92 (256)
T ss_pred cCCccEEEECCc
Confidence 36899999875
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.059 Score=47.46 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=52.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
++.++||.|+ |.+|...++.+...|+ +|+++++++++.+.+ ++++... . .|..+ ..+....+..... +++|
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id 82 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD-VAAQKALAQALAEAFGRLD 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4678999986 9999999999999999 999999987766544 4455432 2 24331 2222222222222 3789
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 83 ~vi~~ag~ 90 (249)
T PRK06500 83 AVFINAGV 90 (249)
T ss_pred EEEECCCC
Confidence 99998873
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.056 Score=48.71 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=53.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+.... . ..|..+ .......+..... +++|
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~~~d 80 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD-FDAIDAVVADAEATFGPID 80 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence 3578999986 9999999998888899 999999998887666543211 1 234441 2233333333322 3689
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++.+.|.
T Consensus 81 ~vv~~ag~ 88 (277)
T PRK06180 81 VLVNNAGY 88 (277)
T ss_pred EEEECCCc
Confidence 99999875
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.25 Score=44.62 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=44.1
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc---CChhhHHHHHHcCCceEeC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD---TNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~lg~~~vi~ 237 (371)
....+++|.+|+=--+|..|.+.+.+|+.+|+ +++.+. .+.+|++.++.+|++.+.-
T Consensus 55 ~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy-~~iivmP~~~S~er~~~l~a~GAevi~t 114 (300)
T COG0031 55 KRGLLKPGGTIVEATSGNTGIALAMVAAAKGY-RLIIVMPETMSQERRKLLRALGAEVILT 114 (300)
T ss_pred HcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEEc
Confidence 45669999955444479999999999999999 555553 4678899999999976553
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.14 Score=46.67 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=48.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh--h----HHHHHHcCCce-E--eCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--K----CEKAKAFGVTE-F--LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~--~----~~~~~~lg~~~-v--i~~~~~~~~~~~~v~~~~~- 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+.+.++.+ + .+.+++.|... + .|..+ .....+.+.+...
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD-EAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHHHHH
Confidence 4689999986 9999999888888899 8877655432 1 12234445432 2 24431 2233333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 132 ~g~iD~lV~nAg~ 144 (300)
T PRK06128 132 LGGLDILVNIAGK 144 (300)
T ss_pred hCCCCEEEECCcc
Confidence 379999998873
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.058 Score=51.27 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=55.9
Q ss_pred EEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH--cCC--c-eEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 190 VVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA--FGV--T-EFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~--lg~--~-~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
|+|+|+|.+|..+++.+...+- .+|++.+++.++.+.+.+ .+. . ..+|.. +. +.+.++.. +.|+||+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~----~~-~~l~~~~~-~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVN----DP-ESLAELLR-GCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TT----TH-HHHHHHHT-TSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecC----CH-HHHHHHHh-cCCEEEEC
Confidence 6899999999999999987764 389999999999877643 222 1 233443 22 22455443 56999999
Q ss_pred CCChHHHHHHHHHhccCCceEEE
Q 017460 264 IGDTGMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 264 ~g~~~~l~~~~~~l~~~~G~~v~ 286 (371)
+|.......+-.|+..+ -.++.
T Consensus 75 ~gp~~~~~v~~~~i~~g-~~yvD 96 (386)
T PF03435_consen 75 AGPFFGEPVARACIEAG-VHYVD 96 (386)
T ss_dssp SSGGGHHHHHHHHHHHT--EEEE
T ss_pred CccchhHHHHHHHHHhC-CCeec
Confidence 98653444444556665 56666
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.061 Score=47.43 Aligned_cols=78 Identities=29% Similarity=0.385 Sum_probs=52.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |++|...++.+...|+ +|+.+++++++.+.+ +..+... ..|..+ .....+.+..... +
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD-EEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999986 9999999999988999 899999988765443 3334431 234331 2233333333322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|.||.+.|
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899999887
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.12 Score=42.57 Aligned_cols=88 Identities=20% Similarity=0.352 Sum_probs=58.7
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
+|-++|.|.+|...+.-+...|+ +|++.++++++.+.+.+.|+. ..++ ..+.+. ..|+||-++.+..
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~-~~~s------~~e~~~-----~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAE-VADS------PAEAAE-----QADVVILCVPDDD 69 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEE-EESS------HHHHHH-----HBSEEEE-SSSHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhh-hhhh------hhhHhh-----cccceEeecccch
Confidence 68899999999999888888999 999999999999999888854 3322 222222 3689999998765
Q ss_pred HHHHHHH------HhccCCceEEEecCC
Q 017460 269 MITTALQ------SCCDGWGLAVTLGVP 290 (371)
Q Consensus 269 ~l~~~~~------~l~~~~G~~v~~g~~ 290 (371)
..+..+. .+.++ ..++.++..
T Consensus 70 ~v~~v~~~~~i~~~l~~g-~iiid~sT~ 96 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPG-KIIIDMSTI 96 (163)
T ss_dssp HHHHHHHCTTHGGGS-TT-EEEEE-SS-
T ss_pred hhhhhhhhhHHhhccccc-eEEEecCCc
Confidence 5555444 34454 455566543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.041 Score=47.99 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=72.7
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHhC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~~~~~~~v~~~~~ 254 (371)
...++.+|++|+=.|.|+ |.+++-||++.|. .+|+..+..++..+.++ ++|....+... . ..+.+...
T Consensus 88 ~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~--~----~Dv~~~~~ 160 (256)
T COG2519 88 ARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK--L----GDVREGID 160 (256)
T ss_pred HHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEE--e----cccccccc
Confidence 568899999999988764 7888889988875 69999999999888774 34543211111 1 11222222
Q ss_pred C-CccEE-EEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 255 G-GADYS-FECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 255 g-g~dvV-id~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+ .+|.| +|.-.-.+.++.+.+.|+++ |.++.+...
T Consensus 161 ~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P~ 197 (256)
T COG2519 161 EEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSPT 197 (256)
T ss_pred ccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcCC
Confidence 3 68875 66666667899999999998 999988543
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.21 Score=42.43 Aligned_cols=76 Identities=30% Similarity=0.389 Sum_probs=50.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-c----CCce-EeCCCCCCchHHHHHHHHhCCCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F----GVTE-FLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-l----g~~~-vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
++.+++|+|+ |.+|.+.+..+...|+ +|+.+.++.++.+.+.+ + +... ..+..+ ..+..+.+ .++|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~-----~~~d 99 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD-DAARAAAI-----KGAD 99 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC-HHHHHHHH-----hcCC
Confidence 5789999986 9999998888888898 99999999887665532 2 3321 122210 11222222 2689
Q ss_pred EEEEcCCChH
Q 017460 259 YSFECIGDTG 268 (371)
Q Consensus 259 vVid~~g~~~ 268 (371)
+||.+++...
T Consensus 100 iVi~at~~g~ 109 (194)
T cd01078 100 VVFAAGAAGV 109 (194)
T ss_pred EEEECCCCCc
Confidence 9999887653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.079 Score=46.68 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh--HHHHHHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
++.++||+|+ |++|.+.+..+...|+ +|+.+.++... .+.+++++.. . ..|..+ ...+...+.+... +++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~ 81 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSD-IEAIKALVDSAVEEFGHI 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4789999986 8999999988888999 89999886522 2333445532 1 234442 3334444444332 379
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|++|.+.|.
T Consensus 82 d~li~~ag~ 90 (248)
T TIGR01832 82 DILVNNAGI 90 (248)
T ss_pred CEEEECCCC
Confidence 999998864
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.073 Score=48.51 Aligned_cols=79 Identities=19% Similarity=0.327 Sum_probs=52.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc-eE--eCCCCCCchHHHHHHHHh--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT-EF--LNPNDNNEPVQQVIKRIT--DG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~v--i~~~~~~~~~~~~v~~~~--~g 255 (371)
.+.++||+|+ |++|.+.++.+...|+ +|++++++.++.+.+. +.+.. .+ .|..+ .+.+.+.+.... -+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD-LDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 3578999986 9999999998888899 9999999987765542 23332 12 24431 223333333322 13
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 78999999874
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.19 Score=42.80 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=60.9
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCce--EeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE--FLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~--vi~~~~~~~~~~~~v~~~~ 253 (371)
....++++++||=+|+|. |..++.+++.....+|++++.+++..+.++ +++... ++.. +..+.+..+.
T Consensus 34 ~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~-----d~~~~~~~~~ 107 (196)
T PRK07402 34 SQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG-----SAPECLAQLA 107 (196)
T ss_pred HhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC-----chHHHHhhCC
Confidence 455677889998888653 445556665543239999999998877764 355432 2322 1222222221
Q ss_pred CCCccE-EEEcCCC-hHHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADY-SFECIGD-TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dv-Vid~~g~-~~~l~~~~~~l~~~~G~~v~~g 288 (371)
..+|. +++.... ...++.+.+.|+++ |+++...
T Consensus 108 -~~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~ 142 (196)
T PRK07402 108 -PAPDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATA 142 (196)
T ss_pred -CCCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEe
Confidence 22344 4543322 24678888999997 9988774
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.059 Score=47.78 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=53.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc---eEeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT---EFLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~---~vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |++|.+.+..+...|+ +|+.+.++.++.+.+. +.+.. ...|..+ ...+.+.+.+... +
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ-HQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4789999986 8999999999989999 9999999887765542 22322 1234431 2334444443322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++.+.|.
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 79999998773
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.12 Score=46.46 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=52.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCc-eE--eCCCCCCchHHHHHHHHhC--CCccE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVT-EF--LNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~-~v--i~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
+.+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ ++.. .. .|..+ ...+.+.+..... +++|.
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d~ 80 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD-RAAVFAAVETAVEHFGRLDI 80 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 468999986 9999999888888898 89999998887766543 3221 12 24331 2333333333322 37899
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|.+.|.
T Consensus 81 vi~~ag~ 87 (275)
T PRK08263 81 VVNNAGY 87 (275)
T ss_pred EEECCCC
Confidence 9999874
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.076 Score=47.50 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=52.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-Hc----CCc-e--EeCCCCCCchHHHHHHHHhC-C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF----GVT-E--FLNPNDNNEPVQQVIKRITD-G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l----g~~-~--vi~~~~~~~~~~~~v~~~~~-g 255 (371)
+++++||+|+ +++|.+.++.+...|+ +|++++++.++.+.+. ++ +.. . ..|..+ ..+....+.+... +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK-REDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHHHhhC
Confidence 4788999986 8999999999989999 8999999887765542 22 322 1 234442 2333333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++.+.|.
T Consensus 85 ~iD~lv~nag~ 95 (263)
T PRK08339 85 EPDIFFFSTGG 95 (263)
T ss_pred CCcEEEECCCC
Confidence 79999998874
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.09 Score=46.72 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=52.0
Q ss_pred CCCCCCEEEEEcc-ChHHHHHHHHHHHc-CCCEEEEEcCChhh-HHH----HHHcCC-c-eE--eCCCCCCchHHHHHHH
Q 017460 183 DISKGSTVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEK-CEK----AKAFGV-T-EF--LNPNDNNEPVQQVIKR 251 (371)
Q Consensus 183 ~~~~~~~VlI~Ga-g~~G~~ai~la~~~-G~~~vi~~~~~~~~-~~~----~~~lg~-~-~v--i~~~~~~~~~~~~v~~ 251 (371)
.+..+.+|||+|+ |++|.+.++-+... |+ +|+++++++++ .+. +++.+. . ++ .|..+ ..++.+.+.+
T Consensus 4 ~~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~-~~~~~~~~~~ 81 (253)
T PRK07904 4 AVGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD-TDSHPKVIDA 81 (253)
T ss_pred ccCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC-hHHHHHHHHH
Confidence 3566789999986 99999988876666 57 99999888765 333 333342 1 22 34431 2333333444
Q ss_pred HhC-CCccEEEEcCCC
Q 017460 252 ITD-GGADYSFECIGD 266 (371)
Q Consensus 252 ~~~-gg~dvVid~~g~ 266 (371)
... +++|+++.+.|.
T Consensus 82 ~~~~g~id~li~~ag~ 97 (253)
T PRK07904 82 AFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHhcCCCCEEEEeeec
Confidence 433 489999887754
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.069 Score=49.16 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=52.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC-Cce-EeCCCCCCchHHHHHHHHhC--CCccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG-VTE-FLNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg-~~~-vi~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
.+.+|||+|+ |++|.+.+..+...|+ +|+++.+++++.+.+ .++. +.. ..|..+ .......+.+... +++|+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d-~~~v~~~~~~~~~~~~~iD~ 102 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD-LESVRAFAERFLDSGRRIDI 102 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC-HHHHHHHHHHHHhcCCCCCE
Confidence 4678999986 8999999988888999 899999988776544 3332 221 234441 2233333433332 37999
Q ss_pred EEEcCC
Q 017460 260 SFECIG 265 (371)
Q Consensus 260 Vid~~g 265 (371)
+|.+.|
T Consensus 103 li~nAg 108 (315)
T PRK06196 103 LINNAG 108 (315)
T ss_pred EEECCC
Confidence 999887
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.073 Score=44.06 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=61.4
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+|.|+|| |-+|...++-|+.+|. .|++++|++.|....+..-+. -+++.. ...+.+ .|+|+||++.+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~----~~a~~l-----~g~DaVIsA~~ 71 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLT----SLASDL-----AGHDAVISAFG 71 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChh----hhHhhh-----cCCceEEEecc
Confidence 5788886 9999999999999998 999999999987554222110 122221 111111 28999999988
Q ss_pred Ch--H-------HHHHHHHHhccC-CceEEEecCCCC
Q 017460 266 DT--G-------MITTALQSCCDG-WGLAVTLGVPKL 292 (371)
Q Consensus 266 ~~--~-------~l~~~~~~l~~~-~G~~v~~g~~~~ 292 (371)
.. . ..+..+..++.. --|+..+|..++
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGS 108 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGS 108 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccc
Confidence 64 1 234456666652 247888876543
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.063 Score=47.61 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=52.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |.+|...++.+...|+ +|+.+.+++++.+.+ ++.|... . .|..+ ...+.+.+..... +
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD-HDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence 4789999986 9999999998888899 899999987765443 3334321 2 24441 2333333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 78999998874
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.1 Score=47.46 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=32.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.++.++||+|+|++|.+++..+...|+++|+++.|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3578899999999999988888889996799999986
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.077 Score=46.79 Aligned_cols=79 Identities=24% Similarity=0.371 Sum_probs=51.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-H---HcCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-K---AFGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~---~lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ . +.+.. . ..|..+ .....+.+.+... +
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD-PDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence 4678999986 9999999998888899 999999987665433 2 22221 1 234431 2223333333321 2
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+||.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 69999998873
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.1 Score=45.79 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=52.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||.|+ |.+|...+..+...|+ +|+++++++++.+.+. +.+.. . ..|..+ .+.+...+..... +
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN-PEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4578999985 9999999999988999 9999999887665442 22321 1 234431 2333333433322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++.+.|.
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 69999998874
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.052 Score=55.39 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=53.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh---------------------hHHHHHHcCCceEeCCCCC-C
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE---------------------KCEKAKAFGVTEFLNPNDN-N 242 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~---------------------~~~~~~~lg~~~vi~~~~~-~ 242 (371)
..+.+|+|+|+|+.|++++..+...|+ +|+++++.+. ..+.++++|++...+..-. +
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD 403 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence 357899999999999999999999999 8999987542 3455677887644433210 1
Q ss_pred chHHHHHHHHhCCCccEEEEcCCC
Q 017460 243 EPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
..+. .+. .++|.||.++|.
T Consensus 404 i~~~----~~~-~~~DavilAtGa 422 (654)
T PRK12769 404 ISLE----SLL-EDYDAVFVGVGT 422 (654)
T ss_pred CCHH----HHH-hcCCEEEEeCCC
Confidence 1111 111 269999998886
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.28 Score=37.63 Aligned_cols=92 Identities=23% Similarity=0.295 Sum_probs=60.7
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHH
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGM 269 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~ 269 (371)
|+|+|.|.+|...++.++..+. +|++++.++++.+.+++.|...+. .+ ..-.+.+++..-..++.++-++++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~~i~-gd---~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVEVIY-GD---ATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSEEEE-S----TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhccccccc-cc---chhhhHHhhcCccccCEEEEccCCHHH
Confidence 6788999999999999999776 999999999999999998865443 21 122233343322278988888876532
Q ss_pred ---HHHHHHHhccCCceEEEe
Q 017460 270 ---ITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 270 ---l~~~~~~l~~~~G~~v~~ 287 (371)
+-..++.+.+. .+++..
T Consensus 76 n~~~~~~~r~~~~~-~~ii~~ 95 (116)
T PF02254_consen 76 NLLIALLARELNPD-IRIIAR 95 (116)
T ss_dssp HHHHHHHHHHHTTT-SEEEEE
T ss_pred HHHHHHHHHHHCCC-CeEEEE
Confidence 22233334444 555543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.075 Score=47.79 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=50.7
Q ss_pred CCCEEEEEccC---hHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGLG---TVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Gag---~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
+++++||+|++ ++|.+.++.+...|+ +|+.+.++++..+.+ +++|.... .|..+ .......+.+...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED-IASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC-HHHHHHHHHHHHHHh
Confidence 47889999874 899999998888999 888887765332222 34454322 35442 2333344444332
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+.+|+++++.|
T Consensus 84 g~iD~lVnnAG 94 (271)
T PRK06505 84 GKLDFVVHAIG 94 (271)
T ss_pred CCCCEEEECCc
Confidence 37999999887
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.094 Score=45.91 Aligned_cols=79 Identities=25% Similarity=0.396 Sum_probs=52.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |.+|...+..+...|+ +|+++.+++++.+.+ ++.+... . .|..+ ...+.+.+..... +
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD-EAAVRALIEAAVEAFG 81 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 3578999986 9999999999888899 899999988775443 3344322 2 34431 2334443433322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|.||.+.|.
T Consensus 82 ~id~vi~~ag~ 92 (246)
T PRK05653 82 ALDILVNNAGI 92 (246)
T ss_pred CCCEEEECCCc
Confidence 68999998864
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.16 Score=43.74 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=70.6
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHH----HcCCceEeCCCCCC-chHHHHHHHHhC
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNN-EPVQQVIKRITD 254 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~-~~~~~~v~~~~~ 254 (371)
.++.....+||=+|.+ .|..++.+|..+. -.++++++.++++.+.++ +.|.+..+..- . .+..+.+.+...
T Consensus 54 L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~--~~gdal~~l~~~~~ 130 (219)
T COG4122 54 LARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELL--LGGDALDVLSRLLD 130 (219)
T ss_pred HHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEE--ecCcHHHHHHhccC
Confidence 4556678889988853 4777788888775 338999999999988874 46765422111 1 245555655444
Q ss_pred CCccEEE-EcCC--ChHHHHHHHHHhccCCceEEEec
Q 017460 255 GGADYSF-ECIG--DTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 255 gg~dvVi-d~~g--~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.||+|| |+-- -+..++.++++|++| |.++.=.
T Consensus 131 ~~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DN 166 (219)
T COG4122 131 GSFDLVFIDADKADYPEYLERALPLLRPG-GLIVADN 166 (219)
T ss_pred CCccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEee
Confidence 5899985 4442 234689999999997 8776543
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.055 Score=48.41 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ .+.+.. . .+|..+ ...+...+..... +
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD-YAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 5789999986 8999999998888999 899999887765433 222322 1 235441 2334444444322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 7899998775
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.15 Score=45.07 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc---eEeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT---EFLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~---~vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+ +..+.. ...|..+ ...+...+..... +
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD-EEAINAGIDYAVETFG 80 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4678999985 9999999998888899 999999988766543 223332 1224431 2233333333221 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+||.+.+.
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 79999998863
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.097 Score=46.37 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=52.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||.|+ |++|...+..+...|+ +|+.+++++++.+.+ ++.+... . .|..+ .......+.+... +
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD-EAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 3678999986 8999999998888999 899999988776554 2334321 2 24431 2223333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|++|.+.|.
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.05 Score=46.46 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=60.4
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhCCC
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDGG 256 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~~gg 256 (371)
..+..++.+||-+|+|. |..++.+++. |. +|++++.+++-.+.+++ .+...+ ... ..++.+ . ...+.
T Consensus 25 ~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~--~~d~~~-~--~~~~~ 95 (197)
T PRK11207 25 AVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNL-HTA--VVDLNN-L--TFDGE 95 (197)
T ss_pred hcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEE--ecChhh-C--CcCCC
Confidence 33455678999999875 6677777764 77 99999999987666643 232211 000 111111 0 11237
Q ss_pred ccEEEEcCCC--------hHHHHHHHHHhccCCceEEEec
Q 017460 257 ADYSFECIGD--------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 257 ~dvVid~~g~--------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
||+|+....- ...+....+.|+++ |.++.+.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~ 134 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA 134 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 9999875431 13466777889998 9965543
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.24 Score=38.88 Aligned_cols=92 Identities=17% Similarity=0.302 Sum_probs=56.5
Q ss_pred EEEEcc-ChHHHHHHHHHHHcC--CCEEEEEcCCh--hhH-HHHHHcCCceEeCCCCCCchHHHHHH-------------
Q 017460 190 VVIFGL-GTVGLSVAQGAKARG--ASRIIGVDTNP--EKC-EKAKAFGVTEFLNPNDNNEPVQQVIK------------- 250 (371)
Q Consensus 190 VlI~Ga-g~~G~~ai~la~~~G--~~~vi~~~~~~--~~~-~~~~~lg~~~vi~~~~~~~~~~~~v~------------- 250 (371)
|.|+|+ |++|..++++.+... + +|++..... +++ +.+++|.+..++-.+ +...+.++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~---~~~~~~l~~~~~~~~~~~~v~ 76 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIAD---EEAYEELKKALPSKGPGIEVL 76 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESS---HHHHHHHHHHHHHTTSSSEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcC---HHHHHHHHHHhhhcCCCCEEE
Confidence 578897 999999999999886 6 677765433 333 334778887665442 22222222
Q ss_pred -------HHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 251 -------RITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 251 -------~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
++... .+|+|+.++.+-..+.-.+.++.. |+-+.+
T Consensus 77 ~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~--gk~iaL 119 (129)
T PF02670_consen 77 SGPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKA--GKDIAL 119 (129)
T ss_dssp ESHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHT--TSEEEE
T ss_pred eChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHC--CCeEEE
Confidence 33332 788888887666677888888876 444444
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.074 Score=47.31 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=52.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc-----CCc-e--EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF-----GVT-E--FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l-----g~~-~--vi~~~~~~~~~~~~v~~~~~- 254 (371)
.+.++||.|+ |++|.+.+..+...|+ +|+.+++++++.+.+ +++ +.. . ..|..+ ..++...+.+...
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD-AASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 4678999986 8999999999889999 899999988766544 222 221 1 224431 2334444443322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+.+|++|.+.|.
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 379999998873
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.1 Score=46.51 Aligned_cols=79 Identities=27% Similarity=0.371 Sum_probs=51.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-c--CC-ceE--eCCCCCCchHHHHHHHHh-CCCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F--GV-TEF--LNPNDNNEPVQQVIKRIT-DGGA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-l--g~-~~v--i~~~~~~~~~~~~v~~~~-~gg~ 257 (371)
++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ + +. ... .|..+ .....+.+.... .+++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS-EAGREAVLARAREMGGI 81 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHhcCCC
Confidence 4678999985 9999999988888999 89999998877655532 2 21 112 24431 222222222222 2478
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+++.+.|.
T Consensus 82 d~lv~~ag~ 90 (263)
T PRK09072 82 NVLINNAGV 90 (263)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.27 Score=43.94 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
.+.+|+|+|.|++|..++..+-..|..+++.++.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999999998899988765
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.21 Score=44.49 Aligned_cols=78 Identities=17% Similarity=0.338 Sum_probs=49.0
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCCh---hhHHHH-HHc-CCc---eEeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNP---EKCEKA-KAF-GVT---EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~---~~~~~~-~~l-g~~---~vi~~~~~~~~~~~~v~~~~~ 254 (371)
.++++||+|+ +++|.+.+..+...|+ +|+.+.++. ++.+.+ .++ +.. ...|..+ .+.....+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS-DEEITACFETIKE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHHHHH
Confidence 4688999985 5899998888888999 888886543 333333 333 221 1235542 3344444444433
Q ss_pred --CCccEEEEcCC
Q 017460 255 --GGADYSFECIG 265 (371)
Q Consensus 255 --gg~dvVid~~g 265 (371)
+++|+++.+.|
T Consensus 84 ~~g~ld~lv~nag 96 (257)
T PRK08594 84 EVGVIHGVAHCIA 96 (257)
T ss_pred hCCCccEEEECcc
Confidence 47999998876
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.12 Score=44.28 Aligned_cols=81 Identities=30% Similarity=0.409 Sum_probs=56.4
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
-.|.+++|+|.|.+|..+++.+...|+ +|++.++++++.+.+.+ +|+. .++.. ++....+|+++-|
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~-----------~l~~~~~Dv~vp~ 92 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPE-----------EIYSVDADVFAPC 92 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcch-----------hhccccCCEEEec
Confidence 357899999999999999999999999 99999999888776644 4653 33321 1111258898866
Q ss_pred CCChHHHHHHHHHhc
Q 017460 264 IGDTGMITTALQSCC 278 (371)
Q Consensus 264 ~g~~~~l~~~~~~l~ 278 (371)
......-...++.++
T Consensus 93 A~~~~I~~~~~~~l~ 107 (200)
T cd01075 93 ALGGVINDDTIPQLK 107 (200)
T ss_pred ccccccCHHHHHHcC
Confidence 544333344455564
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.1 Score=46.21 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=52.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.|.++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+ ++++.. . ..|..+ .......+.+... +.+|
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id 86 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD-EAQVAAGVAEVLGQFGRLD 86 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4678999985 9999999988888899 899998877655443 444432 1 234441 2233333343332 3689
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 87 ~li~~ag~ 94 (255)
T PRK05717 87 ALVCNAAI 94 (255)
T ss_pred EEEECCCc
Confidence 99998873
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.52 Score=34.70 Aligned_cols=85 Identities=25% Similarity=0.425 Sum_probs=55.3
Q ss_pred EEEEEccChHHHHHHHHHHHcC---CCEEEEE-cCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 189 TVVIFGLGTVGLSVAQGAKARG---ASRIIGV-DTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G---~~~vi~~-~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+|.|+|+|.+|.+.+.-+...| . +|+.+ .+++++.+.+ +++++.... .+..+.++ ..|+||-|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~advvila 68 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA------DDNEEAAQ-----EADVVILA 68 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES------EEHHHHHH-----HTSEEEE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc------CChHHhhc-----cCCEEEEE
Confidence 4778899999999999888888 6 88844 8999988777 566654222 12333333 37999999
Q ss_pred CCChHHHHHHHHH---hccCCceEEEe
Q 017460 264 IGDTGMITTALQS---CCDGWGLAVTL 287 (371)
Q Consensus 264 ~g~~~~l~~~~~~---l~~~~G~~v~~ 287 (371)
+... .+...++. ..++ ..++.+
T Consensus 69 v~p~-~~~~v~~~i~~~~~~-~~vis~ 93 (96)
T PF03807_consen 69 VKPQ-QLPEVLSEIPHLLKG-KLVISI 93 (96)
T ss_dssp S-GG-GHHHHHHHHHHHHTT-SEEEEE
T ss_pred ECHH-HHHHHHHHHhhccCC-CEEEEe
Confidence 9764 44444444 3443 455554
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.091 Score=46.52 Aligned_cols=78 Identities=24% Similarity=0.324 Sum_probs=51.6
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc-eEe--CCCCCCchHHHHHHHHhC--CC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT-EFL--NPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~vi--~~~~~~~~~~~~v~~~~~--gg 256 (371)
|.++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+.. ..+ |..+ ...+...+.+... +.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN-PEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence 468999986 8999999999999999 9999999887665442 22321 222 4431 2333333333322 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 79 id~lI~~ag~ 88 (252)
T PRK07677 79 IDALINNAAG 88 (252)
T ss_pred ccEEEECCCC
Confidence 8999998873
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.086 Score=46.84 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=52.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHH----HHHHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE----KAKAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~----~~~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.+++|.|+ |++|...++.+...|++.|+++++++++.. .+++.+... .+|..+ ...+.+.+..... +
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 83 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD-VEDCRRVVAAADEAFG 83 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 5688999986 899999999999999943999988876554 233344432 235441 2223333333221 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 84 ~id~li~~ag~ 94 (260)
T PRK06198 84 RLDALVNAAGL 94 (260)
T ss_pred CCCEEEECCCc
Confidence 79999999874
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.081 Score=47.20 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=52.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----H-c-CCc---eEeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----A-F-GVT---EFLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~-l-g~~---~vi~~~~~~~~~~~~v~~~~~- 254 (371)
.+.++||.|+ +++|.+.++.+...|+ +|+.+.+++++.+.+. + . +.. ...|..+ .+...+.+.+...
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD-EADVAAFAAAVEAR 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC-HHHHHHHHHHHHHh
Confidence 4788999986 8999999999989999 8999999887765432 1 1 111 1224441 2333333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+.+|++|.+.|.
T Consensus 85 ~g~id~li~~Ag~ 97 (265)
T PRK07062 85 FGGVDMLVNNAGQ 97 (265)
T ss_pred cCCCCEEEECCCC
Confidence 379999999874
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.1 Score=46.29 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=52.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |.+|...+..+...|+ +|+++.+++++.+.+ ++.+... . .|..+ ...+.+.+..... +
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN-EDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4689999986 9999999999989999 899998988665433 3445432 1 24431 2223333332211 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 84 ~~d~vi~~ag~ 94 (262)
T PRK13394 84 SVDILVSNAGI 94 (262)
T ss_pred CCCEEEECCcc
Confidence 68999998874
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=44.60 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=49.7
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+++|+|+ |++|.+.++.+...|+ +|+.+.+++++.+.+ ++++...+ .|..+ ...+.+.+... .+.+|+++.+.|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~-~~~id~lv~~ag 78 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD-PASLEEARGLF-PHHLDTIVNVPA 78 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC-HHHHHHHHHHH-hhcCcEEEECCC
Confidence 5899986 8999999998888899 999999988877654 44554322 35441 22333333332 236899998764
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.11 Score=47.10 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC--------c---eEeCCCCCCchHHHHHHHHh
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--------T---EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--------~---~vi~~~~~~~~~~~~v~~~~ 253 (371)
.+.++||++|+|. |.++..++++.+..+|.+++.+++-.+.++++-. + .++ ..+..+.+.. .
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~-----~~Da~~~l~~-~ 147 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV-----IGDGIKFVAE-T 147 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE-----ECchHHHHhh-C
Confidence 4568999998865 6667777777677799999999998888866311 1 111 1122233333 3
Q ss_pred CCCccEEEEcCCC----------hHHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFECIGD----------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid~~g~----------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.+|+||--... .+.++.+.+.|+++ |.++..
T Consensus 148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~ 190 (283)
T PRK00811 148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQ 190 (283)
T ss_pred CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence 3489998753321 22356778899998 998875
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.11 Score=46.08 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=51.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cC----Cc-eEeCCCCCCchHHHHHHHHhC--CCc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FG----VT-EFLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg----~~-~vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
+.++||+|+ |++|...+..+...|+ +|+++++++++.+.+.+ +. +. ...|..+ ...+.+.+.+... +.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD-ADALAAAAADFIAAHGLP 79 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC-HHHHHHHHHHHHHhCCCC
Confidence 358999985 9999999888888899 99999998887665432 22 11 1235441 2334444443332 268
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+++.+.|.
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 999998763
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.065 Score=47.98 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=52.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
.+.+++|+|+ |.+|...++.+...|+ +|++++++.++.+... +... ..|..+ .+.+.+.+..... +.+|++|
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~D~~d-~~~~~~~~~~~~~~~g~~d~li 78 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPIP--GVELLELDVTD-DASVQAAVDEVIARAGRIDVLV 78 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccccC--CCeeEEeecCC-HHHHHHHHHHHHHhCCCCCEEE
Confidence 3568999986 9999999888888899 8999998876654321 2222 235442 3444444444432 3789999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 79 ~~ag~ 83 (270)
T PRK06179 79 NNAGV 83 (270)
T ss_pred ECCCC
Confidence 99984
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.16 Score=45.64 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=58.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc---CCceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---GVTEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l---g~~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
..++.+++|+|+|++|.+++..+...|+ +|+++.+++++.+.+ +.+ +....... .+ .....+|+
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~-------~~----~~~~~~Di 181 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSM-------DE----LPLHRVDL 181 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEech-------hh----hcccCccE
Confidence 3457889999999999999888888898 999999998876554 333 22122211 11 11126899
Q ss_pred EEEcCCChH--HH---HHHHHHhccCCceEEEecC
Q 017460 260 SFECIGDTG--MI---TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 260 Vid~~g~~~--~l---~~~~~~l~~~~G~~v~~g~ 289 (371)
||+|++... .. ......++++ ..++.+..
T Consensus 182 vInatp~gm~~~~~~~~~~~~~l~~~-~~v~D~~y 215 (270)
T TIGR00507 182 IINATSAGMSGNIDEPPVPAEKLKEG-MVVYDMVY 215 (270)
T ss_pred EEECCCCCCCCCCCCCCCCHHHcCCC-CEEEEecc
Confidence 999998531 01 1123446664 56666643
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.14 Score=44.83 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=51.7
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-HHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
+.++||.|+ +++|.+.++.+...|+ +|+.+++++++ .+.+++.++.. ..|..+ .......+.+... +++|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~lv 79 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST-NAGIMAFIDELKQHTDGLRAII 79 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC-HHHHHHHHHHHHhhCCCccEEE
Confidence 457999986 8999999998888999 99999887654 33445556432 234431 2333344444332 2699999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 80 ~~ag~ 84 (236)
T PRK06483 80 HNASD 84 (236)
T ss_pred ECCcc
Confidence 98874
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.099 Score=46.39 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=50.5
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--e--EeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--E--FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~--vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
.++++||.|+ +++|.+.++.+...|+ +|+.+.++++..+.++++... . .+|..+ .++..+.+.+... +.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS-DESIERAFATIKERVGK 83 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC-HHHHHHHHHHHHHHhCC
Confidence 5789999986 4899998888888999 899888875434444444221 1 234442 2334444443332 37
Q ss_pred ccEEEEcCC
Q 017460 257 ADYSFECIG 265 (371)
Q Consensus 257 ~dvVid~~g 265 (371)
+|+++.+.|
T Consensus 84 iD~lv~nAg 92 (252)
T PRK06079 84 IDGIVHAIA 92 (252)
T ss_pred CCEEEEccc
Confidence 999999886
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.11 Score=46.92 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HH---cCCce-Ee--CCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA---FGVTE-FL--NPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~---lg~~~-vi--~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |++|...+..+...|+ +|++++++.++.+.+ .+ .+... ++ |..+ ...+.+.+..... +
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD-AAQVEALADAALERFG 82 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 3678999985 9999999998888899 899998887665443 22 23321 22 4431 2233333333221 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 83 ~id~vi~~Ag~ 93 (287)
T PRK06194 83 AVHLLFNNAGV 93 (287)
T ss_pred CCCEEEECCCC
Confidence 68999998875
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.26 Score=44.34 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=49.0
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHh-CCCccE
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRIT-DGGADY 259 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~-~gg~dv 259 (371)
++++|.|+|++|.+.+..+. .|+ +|+.+++++++.+.+ ++.|.. . ..|..+ .+.....+.+.. .+++|+
T Consensus 3 k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 3 EVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS-RESVKALAATAQTLGPVTG 79 (275)
T ss_pred CEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHhcCCCCE
Confidence 56788898999999888774 798 999999987765443 223432 1 235442 233434333331 137999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|.+.|.
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 9999874
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.076 Score=46.58 Aligned_cols=80 Identities=25% Similarity=0.294 Sum_probs=51.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCC-c---eEeCCCCC-Cch---HHHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGV-T---EFLNPNDN-NEP---VQQVIKRI 252 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~-~---~vi~~~~~-~~~---~~~~v~~~ 252 (371)
++.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+. +.+. . ..+|..+. ... +.+.+...
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 4678999986 9999999988888999 8999999887765442 2221 1 11233210 112 23334333
Q ss_pred hCCCccEEEEcCCC
Q 017460 253 TDGGADYSFECIGD 266 (371)
Q Consensus 253 ~~gg~dvVid~~g~ 266 (371)
..+.+|++|.+.|.
T Consensus 84 ~~~~id~vi~~ag~ 97 (239)
T PRK08703 84 TQGKLDGIVHCAGY 97 (239)
T ss_pred hCCCCCEEEEeccc
Confidence 33478999998883
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.049 Score=48.02 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=64.6
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHH----HHcCCceE--eCCCC-CCchHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKA----KAFGVTEF--LNPND-NNEPVQQVI 249 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~----~~lg~~~v--i~~~~-~~~~~~~~v 249 (371)
+....+++||++|+=.|.|+ |-+...+++..|. .+|+..+.++++.+.+ +.+|.... +...+ ....+.+.
T Consensus 32 I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~- 109 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE- 109 (247)
T ss_dssp HHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc-
Confidence 34678899999999987653 5566677776652 4999999999988777 44565321 11110 01112111
Q ss_pred HHHhCCCccEE-EEcCCChHHHHHHHHHh-ccCCceEEEecC
Q 017460 250 KRITDGGADYS-FECIGDTGMITTALQSC-CDGWGLAVTLGV 289 (371)
Q Consensus 250 ~~~~~gg~dvV-id~~g~~~~l~~~~~~l-~~~~G~~v~~g~ 289 (371)
.+..+|.| +|.-.-...++.+.+.| +++ |+++.+..
T Consensus 110 ---~~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP 147 (247)
T PF08704_consen 110 ---LESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSP 147 (247)
T ss_dssp ----TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEES
T ss_pred ---ccCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECC
Confidence 11267775 66665556899999999 887 99998854
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.12 Score=45.99 Aligned_cols=78 Identities=28% Similarity=0.322 Sum_probs=51.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH---HcCCce---EeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK---AFGVTE---FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~---~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
++.++||+|+ |++|.+.++.+...|+ +|+++++++...+..+ ..+.+. ..|..+ .......+.+... ++
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET-YAGAQAAMAAAVEAFGR 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC-HHHHHHHHHHHHHHcCC
Confidence 4678999986 9999999998888999 8999988754333333 334321 235441 2333344444322 37
Q ss_pred ccEEEEcCC
Q 017460 257 ADYSFECIG 265 (371)
Q Consensus 257 ~dvVid~~g 265 (371)
+|+++.+.|
T Consensus 85 id~lv~nAg 93 (260)
T PRK12823 85 IDVLINNVG 93 (260)
T ss_pred CeEEEECCc
Confidence 999999886
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.13 Score=45.63 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=52.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||.|+ |++|...+..+...|+ +|+.+++++++.+.+.+ .+.. ...|..+ ...+...+.+... +
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD-EDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC-HHHHHHHHHHHHHHcC
Confidence 4688999986 8999999998889999 99999998876554422 2321 1234431 2333333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|++|.+.|.
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68999998863
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.065 Score=46.87 Aligned_cols=101 Identities=23% Similarity=0.343 Sum_probs=67.6
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHHc----CCc-eEeCCCCCCchHHHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF----GVT-EFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~l----g~~-~vi~~~~~~~~~~~~v~~~ 252 (371)
.+...+.++++||.+|+|. |..+..+++..+ ..++++++.++...+.+++. +.. .++... ...+ .+
T Consensus 12 ~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d--~~~~-----~~ 83 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD--ADGL-----PF 83 (241)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc--cccC-----CC
Confidence 3567788999999999876 888888888773 23899999999988888664 111 111111 0000 12
Q ss_pred hCCCccEEEEcC-----CC-hHHHHHHHHHhccCCceEEEec
Q 017460 253 TDGGADYSFECI-----GD-TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 253 ~~gg~dvVid~~-----g~-~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.++.+|+|+... .. ...++.+.++|+++ |.++...
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~ 124 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLD 124 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEe
Confidence 234789887532 22 23578889999998 9988764
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.14 Score=46.04 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=57.9
Q ss_pred CCCEEEEEcc-ChHHHH-HHHHHHHcCCCEEEEEcCChhhHHHH-----HHcCCc---eEeCCCCCCchHHHHHHHHhCC
Q 017460 186 KGSTVVIFGL-GTVGLS-VAQGAKARGASRIIGVDTNPEKCEKA-----KAFGVT---EFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~-ai~la~~~G~~~vi~~~~~~~~~~~~-----~~lg~~---~vi~~~~~~~~~~~~v~~~~~g 255 (371)
-|.+.+|.|+ .++|.+ |-++|+ .|. +|+.+.|+.+|++.. ++.++. .++|....+. .-+.+++.+.+
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~-~ye~i~~~l~~ 124 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDE-VYEKLLEKLAG 124 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCch-hHHHHHHHhcC
Confidence 4688999997 789977 566666 999 899999999998765 345542 3568774333 45566666666
Q ss_pred -CccEEEEcCCC
Q 017460 256 -GADYSFECIGD 266 (371)
Q Consensus 256 -g~dvVid~~g~ 266 (371)
.+.+.++++|-
T Consensus 125 ~~VgILVNNvG~ 136 (312)
T KOG1014|consen 125 LDVGILVNNVGM 136 (312)
T ss_pred CceEEEEecccc
Confidence 88899999984
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.31 Score=43.60 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=63.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc-CCc------eEeCCCCCCchHHHHHHHHhCCCc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVT------EFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~~------~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
.++.+||++|.|+ |.++..+++.....++++++.+++-.+.+++. +.. .++. .+..+.+... .+.+
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~-----~Da~~~l~~~-~~~y 137 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE-----ADGAEYIAVH-RHST 137 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE-----CCHHHHHHhC-CCCC
Confidence 4567899999875 77788888777444999999999999988763 321 1221 2333344332 2379
Q ss_pred cEEE-EcCCC---------hHHHHHHHHHhccCCceEEE
Q 017460 258 DYSF-ECIGD---------TGMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 258 dvVi-d~~g~---------~~~l~~~~~~l~~~~G~~v~ 286 (371)
|+|+ |.... .+.++.+.+.|+++ |.++.
T Consensus 138 D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvi 175 (262)
T PRK04457 138 DVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVV 175 (262)
T ss_pred CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEE
Confidence 9986 43221 35678889999998 99876
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.12 Score=46.55 Aligned_cols=78 Identities=26% Similarity=0.343 Sum_probs=51.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ +..+... ..|..+ ..++.+.+.+... +
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH-REEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence 4778999985 8999999999888999 899998887765543 2234321 234431 2233333333222 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
.+|++|.+.|
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 6899999887
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.19 Score=47.43 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=57.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|+..++.++..|+ +|++.+++....+..+.+|+... .++.+.++ ..|+|+-+..
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvV~l~lP 257 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYH-------VSFDSLVS-----VCDVVTIHCP 257 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCceec-------CCHHHHhh-----cCCEEEEcCC
Confidence 47899999999999999999999999 99999887644444445554211 11222221 4677766665
Q ss_pred ChHH----H-HHHHHHhccCCceEEEec
Q 017460 266 DTGM----I-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~~----l-~~~~~~l~~~~G~~v~~g 288 (371)
.+.. + ...+..++++ ..+|.++
T Consensus 258 lt~~T~~li~~~~l~~mk~g-a~lIN~a 284 (385)
T PRK07574 258 LHPETEHLFDADVLSRMKRG-SYLVNTA 284 (385)
T ss_pred CCHHHHHHhCHHHHhcCCCC-cEEEECC
Confidence 3221 1 2455566665 5555554
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.12 Score=46.42 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=51.9
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCc-e--EeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVT-E--FLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
.++||+|+ |.+|...++.+...|+ +|+++.+++++.+.+++ ++.. . ..|..+ ...+.+.+.+... +++|+|
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v 80 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD-SAAVRAVVDRAFAALGRIDVV 80 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 57999985 9999999988888899 99999999887766644 2321 1 234441 2233344433322 378999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|.+.|.
T Consensus 81 i~~ag~ 86 (276)
T PRK06482 81 VSNAGY 86 (276)
T ss_pred EECCCC
Confidence 998873
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.15 Score=46.72 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=63.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeCC-CC--CCchHHHHHHHHhCCCcc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNP-ND--NNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~~-~~--~~~~~~~~v~~~~~gg~d 258 (371)
..+.++|||+|.|. |.++..++++-+..+|.+++.+++-.+.++++-.. ..++. +- ...+....+++..++.+|
T Consensus 89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 35578999998765 55677888887766899999999888887663211 00100 00 011222233333334799
Q ss_pred EEEEcCCC----------hHHHHHHHHHhccCCceEEEec
Q 017460 259 YSFECIGD----------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 259 vVid~~g~----------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+||--... .+.++.+.++|+++ |.++.-+
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~ 206 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQA 206 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence 98653222 13477888899998 9987643
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.19 Score=43.91 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=30.3
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
..+|+|.|+|++|...+..+...|..+++.++.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 57899999999999999999999998888886543
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.12 Score=45.71 Aligned_cols=79 Identities=20% Similarity=0.371 Sum_probs=51.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-eE--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-EF--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||.|+ |++|...+..+...|+ +|+.+.+++++.+.+ ++.+.. .. .|..+ ...+.+.+..... +
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTR-DAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence 4689999986 8999999888888899 899999988765433 333432 12 24431 2223333333221 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 78999998874
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.091 Score=44.74 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=57.0
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhCCCc
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
....++.+||-+|+|. |..+..+++ .|. +|++++.++.-.+.+++ .+.. +... ..+.. .. . ..+.+
T Consensus 26 ~~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~--~~d~~-~~-~-~~~~f 95 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLP--LRTD--AYDIN-AA-A-LNEDY 95 (195)
T ss_pred hccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeE--eccch-hc-c-ccCCC
Confidence 3444567899998753 666666665 487 99999999987766543 2322 1000 00110 00 1 12379
Q ss_pred cEEEEcCC-----C---hHHHHHHHHHhccCCceEEEec
Q 017460 258 DYSFECIG-----D---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 258 dvVid~~g-----~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
|+|+.... . ...++.+.+.|+++ |.++.+.
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~ 133 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVA 133 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEE
Confidence 99976422 1 23567888889998 9865543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.16 Score=47.14 Aligned_cols=87 Identities=25% Similarity=0.369 Sum_probs=54.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++.... ....+|... .++.+.+. ..|+|+-+..
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~~~~~--------~~l~ell~-----~aDiV~l~lP 213 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPE-AEKELGAEY--------RPLEELLR-----ESDFVSLHVP 213 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChh-hHHHcCCEe--------cCHHHHHh-----hCCEEEEeCC
Confidence 57899999999999999999999999 999998875443 233444320 11222221 3567666665
Q ss_pred ChH----HH-HHHHHHhccCCceEEEec
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g 288 (371)
.+. .+ ...+..++++ ..++.++
T Consensus 214 ~t~~T~~~i~~~~~~~mk~g-a~lIN~a 240 (333)
T PRK13243 214 LTKETYHMINEERLKLMKPT-AILVNTA 240 (333)
T ss_pred CChHHhhccCHHHHhcCCCC-eEEEECc
Confidence 322 11 3445556664 5555554
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.91 Score=39.36 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=64.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh-hHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE-KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
++.+|||+|+|.++.-=+..+...|+ +|.++...-. ....+.+.|.-..+... +... .+ .++++||-++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~~r~-----~~~~--dl--~g~~LViaAT 93 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLIKGN-----YDKE--FI--KDKHLIVIAT 93 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEEeCC-----CChH--Hh--CCCcEEEECC
Confidence 47799999999999888888888999 8888754332 22233333433333221 1110 01 3799999999
Q ss_pred CChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeee-ccEEE
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLS-GRTLK 310 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~i~ 310 (371)
+++. ++..+...+...+.++..........+-++... .+ .+++.
T Consensus 94 dD~~-vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv-~rg~l~Ia 138 (223)
T PRK05562 94 DDEK-LNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQR-STKNFVFA 138 (223)
T ss_pred CCHH-HHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEE-ecCCEEEE
Confidence 9864 555444444322666665443333344444332 23 45553
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.27 Score=43.03 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=30.5
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.+|+|+|.|++|..++..+-..|..+++.++.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46799999999999999999889998999887654
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.4 Score=42.00 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh-hHH----HHHHcCCc-eE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCE----KAKAFGVT-EF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~-~~~----~~~~lg~~-~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |.+|...+..+...|+ +++.+.++.. +.+ .+++.+.. .. +|..+ ...+.+.+.+...
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVAD-AAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4678999985 9999999999999999 7777655433 222 22333432 12 24431 2233333333221
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 82 ~~id~vi~~ag~ 93 (245)
T PRK12937 82 GRIDVLVNNAGV 93 (245)
T ss_pred CCCCEEEECCCC
Confidence 378999998874
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.15 Score=45.26 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=51.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh--HHHHHHcCCce---EeCCCCCCchHHHHHHHHhC--CCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFGVTE---FLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
+++++||+|+ +++|.+.++.+...|+ +|+++.++... .+.+++.+... .+|..+ .++..+.+.+... +++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ-QKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4788999986 8999999999888999 88888775432 22334455422 235542 3334444443322 379
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+++.+.|.
T Consensus 85 D~lv~~ag~ 93 (251)
T PRK12481 85 DILINNAGI 93 (251)
T ss_pred CEEEECCCc
Confidence 999998873
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.22 Score=44.59 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=82.4
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-C-CCC-------CCchHHHHHHHHh
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-N-PND-------NNEPVQQVIKRIT 253 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~-~~~-------~~~~~~~~v~~~~ 253 (371)
..-++..+|+.|.|..|+.++..++.+|+ .|...+..+.+.+..+.+|+...- + ... -.++|...-.++.
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 34456788999999999999999999999 888888888888888878774321 1 110 0123433333332
Q ss_pred -CC--CccEEEEcCC--C---hH-HHHHHHHHhccCCceEEEecCCCCCC-eeecchhee-eeccEEEec
Q 017460 254 -DG--GADYSFECIG--D---TG-MITTALQSCCDGWGLAVTLGVPKLKP-EVAAHYGLF-LSGRTLKGS 312 (371)
Q Consensus 254 -~g--g~dvVid~~g--~---~~-~l~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~-~~~~~i~g~ 312 (371)
.. ++|+||-+.- + +. .-++.+..+++| ..++.+....+.. ....+.... .++.+|+|.
T Consensus 239 a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpG-SViVDlAa~~GGNce~t~pg~~v~~~gV~iig~ 307 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPG-SVIVDLAAETGGNCELTEPGKVVTKNGVKIIGY 307 (356)
T ss_pred HHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCC-cEEEEehhhcCCCcccccCCeEEEeCCeEEEee
Confidence 22 8999998753 2 11 246778899997 9999987654421 222222222 237788776
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.38 Score=43.70 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=48.9
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-HH----HHHHcCCce-E--eCCCCCCchHHHHHHHHhC-
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CE----KAKAFGVTE-F--LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-~~----~~~~lg~~~-v--i~~~~~~~~~~~~v~~~~~- 254 (371)
-++.++||+|+ |.+|...+..+...|+ +|+.+.++.++ .+ .++..+... + .|..+ ...+.+.+.+...
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~i~~~ 121 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD-EAFCKDAVEETVRE 121 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 34788999986 8999998888888899 88888776432 21 223334322 2 24431 2223333333222
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 122 ~~~iD~lI~~Ag~ 134 (290)
T PRK06701 122 LGRLDILVNNAAF 134 (290)
T ss_pred cCCCCEEEECCcc
Confidence 378999988763
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.13 Score=45.78 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=49.3
Q ss_pred CCCEEEEEccC---hHHHHHHHHHHHcCCCEEEEEcCChhhHH---HH-HHcCCceE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGLG---TVGLSVAQGAKARGASRIIGVDTNPEKCE---KA-KAFGVTEF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Gag---~~G~~ai~la~~~G~~~vi~~~~~~~~~~---~~-~~lg~~~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
+|+++||+|++ ++|.+.+..+...|+ +|+.+.++++..+ .+ ++++.... .|..+ .++....+.....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE-PGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC-HHHHHHHHHHHHHHc
Confidence 47889999853 899999988888999 8888888754322 22 33443222 34431 2333333333322
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+.+|+++.+.|
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 37899999876
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.11 Score=46.67 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=50.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH---HcCCc---eEeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK---AFGVT---EFLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~---~lg~~---~vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
++.++||+|+ +++|.+.+..+...|+ +|+++.++++-.+.++ +.+.. ...|..+ .......+.+... ++
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISD-EQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence 4779999986 8999999888888899 9999988833222233 23321 1235441 2333333333322 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 83 id~li~~Ag~ 92 (272)
T PRK08589 83 VDVLFNNAGV 92 (272)
T ss_pred cCEEEECCCC
Confidence 8999998863
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.078 Score=48.05 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=37.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~ 227 (371)
.+.+|+|+|+|++|.+++..+...|+++|++++++.+|.+.+
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l 167 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAAL 167 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 467999999999999999999999998999999999887765
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.18 Score=44.67 Aligned_cols=79 Identities=28% Similarity=0.403 Sum_probs=52.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+ +..+... . .|..+ ...+.+.+..... +
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH-KQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHhcC
Confidence 4678999986 8999999998888999 999999987765443 2223221 2 24431 2333333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++.+.|.
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 79999998874
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.14 Score=45.47 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=53.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc---eEeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT---EFLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~---~vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+. +.+.. ...|..+ ...+.+.+.+... +
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d-~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD-EADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4789999985 9999999998888999 9999999887765543 23322 1234441 2333333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|.+|.+.|.
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 78999998874
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.13 Score=45.33 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=51.8
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCce---EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTE---FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
+++|+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.+ ++... ..|..+ ...+.+.+.+... +++|+++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~id~vi 79 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWRNIDVLV 79 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 6899986 9999999999988999 99999999887766533 44321 234431 2334444443332 3799999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 80 ~~ag~ 84 (248)
T PRK10538 80 NNAGL 84 (248)
T ss_pred ECCCc
Confidence 98764
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.3 Score=44.10 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=56.3
Q ss_pred EEEEEccChHHHHH-HHHHHHcCCCEEEEE-cCChhh--HHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 189 TVVIFGLGTVGLSV-AQGAKARGASRIIGV-DTNPEK--CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 189 ~VlI~Gag~~G~~a-i~la~~~G~~~vi~~-~~~~~~--~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+|.|+|+|.+|... ..+.+..++ ++.++ +.++++ ++.++++|.....+ ++...+. ...+|+|++++
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~~------~~e~ll~---~~dIDaV~iaT 72 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSAE------GVDGLLA---NPDIDIVFDAT 72 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEEC------CHHHHhc---CCCCCEEEECC
Confidence 58899999999854 556655577 55554 445543 45678888754432 2222221 12799999999
Q ss_pred CChHHHHHHHHHhccCCceEEEe
Q 017460 265 GDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
+...+.+.+..++.. |..+..
T Consensus 73 p~~~H~e~a~~al~a--Gk~VId 93 (285)
T TIGR03215 73 SAKAHARHARLLAEL--GKIVID 93 (285)
T ss_pred CcHHHHHHHHHHHHc--CCEEEE
Confidence 987777777777776 554443
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.021 Score=29.92 Aligned_cols=22 Identities=36% Similarity=0.277 Sum_probs=15.8
Q ss_pred eeEEEEecCCCCeEEEEeecCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPP 35 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~ 35 (371)
|||++++++++ .+++++|.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 89999999988 99999999975
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=45.29 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=50.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC-hhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~-~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++.++ ++..+.+++.+... ..|..+ .....+.+.+... +++|++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~l 83 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN-RDQVKKSKEVVEKEFGRVDVL 83 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 4688999986 9999999998888999 78776544 34444454444432 235441 2334444443322 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|.+.|.
T Consensus 84 i~~ag~ 89 (255)
T PRK06463 84 VNNAGI 89 (255)
T ss_pred EECCCc
Confidence 998864
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.13 Score=45.45 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=51.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-Hc--CCc-eE--eCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF--GVT-EF--LNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l--g~~-~v--i~~~~~~~~~~~~v~~~~~--gg 256 (371)
++.++||+|+ |.+|...++.+...|+ +|+.+.++.++.+... ++ +.. .. .|..+ .....+.+..... ++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS-AEAVEALVDFVAARWGR 81 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence 4678999986 9999998888878898 8999998877654432 22 321 12 24431 2233333333322 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 82 id~vi~~ag~ 91 (252)
T PRK06138 82 LDVLVNNAGF 91 (252)
T ss_pred CCEEEECCCC
Confidence 9999998874
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.2 Score=44.04 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=65.7
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh-
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT- 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~- 253 (371)
...+..++++||-+|.| .|..++.+++.++ ..+|++++.+++..+.+++ .|...-+... ..+..+.+.++.
T Consensus 62 ~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~--~gda~~~L~~l~~ 138 (234)
T PLN02781 62 MLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFI--QSDALSALDQLLN 138 (234)
T ss_pred HHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--EccHHHHHHHHHh
Confidence 34566778899999864 3566666676653 3499999999988777643 5543212111 223444444442
Q ss_pred ---CCCccEEEEcCCC---hHHHHHHHHHhccCCceEEEe
Q 017460 254 ---DGGADYSFECIGD---TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ---~gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.||+||--... ...++.+++.+++| |.++.-
T Consensus 139 ~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~d 177 (234)
T PLN02781 139 NDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAFD 177 (234)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEEE
Confidence 2379998744321 23577889999997 877654
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.14 Score=45.58 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=51.1
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--CC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ +..+... ..|..+ ...+...+..... ++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD-AEACERLIEAAVARFGG 78 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence 357899986 9999999999989999 999999987765433 2234321 224431 2333333433322 36
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|+||.+.|.
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 8999999863
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.17 Score=44.60 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=51.1
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----c--CCc-e--EeCCCCCCchHHHHHHHHhC--
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----F--GVT-E--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----l--g~~-~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
+.++||+|+ |++|...+..+...|+ +|+++++++++.+.+.+ . +.. . ..|..+ ...+.+.+.+...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND-HDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 467999986 9999998888878898 89999998877655422 1 221 1 235542 2344444444332
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 80 ~~id~vi~~ag 90 (248)
T PRK08251 80 GGLDRVIVNAG 90 (248)
T ss_pred CCCCEEEECCC
Confidence 37999999886
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.22 Score=39.96 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=28.4
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
+|+|+|+|++|...+..+...|.+++..++.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999999888888755
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.13 Score=45.41 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=30.6
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.+|+|.|+|++|..++..+...|.++++.++.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 47899999999999999999999998888887644
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.34 Score=44.15 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=62.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh--hhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP--EKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~--~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~- 254 (371)
++.++||+|+ |++|.+.++.+...|+ +|+.+.++. ++.+.+ ++.+... ..|..+ .+.....+.+...
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD-EKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 5678999986 8999999998888999 888876542 233222 2334321 234441 2333344444332
Q ss_pred -CCccEEEEcCCCh--------------------------HHHHHHHHHhccCCceEEEecCCC
Q 017460 255 -GGADYSFECIGDT--------------------------GMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 255 -gg~dvVid~~g~~--------------------------~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+++|+++.+.|.. ..++.++..+..+ |+++.+++..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~iv~iSS~~ 188 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG-ASIITTSSIQ 188 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC-CEEEEECCch
Confidence 3789999887631 1123344445566 8999887653
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.16 Score=45.62 Aligned_cols=78 Identities=26% Similarity=0.412 Sum_probs=51.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HH---cC--Cc-eE--eCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA---FG--VT-EF--LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~---lg--~~-~v--i~~~~~~~~~~~~v~~~~~- 254 (371)
++.++||.|+ |.+|...++.+...|+ +|+.+.+++++.+.. .+ .+ .. .+ .|..+ .......+.+...
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD-EDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 3689999986 8999999999999999 899998887765433 22 21 11 12 24431 2233333333322
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 84 ~~~~d~li~~ag 95 (276)
T PRK05875 84 HGRLHGVVHCAG 95 (276)
T ss_pred cCCCCEEEECCC
Confidence 37899999887
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.15 Score=45.51 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=49.8
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCce--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||.|+ +++|.+.+..+...|+ +|+.+.++++..+.++ ++|... ..|..+ .++..+.+.+...
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVAS-DDEINQVFADLGKHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCC-HHHHHHHHHHHHHHh
Confidence 5788999983 5899999888888999 8888766543333332 234322 234442 3344444444332
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|+++++.|.
T Consensus 83 g~iD~lVnnAG~ 94 (261)
T PRK08690 83 DGLDGLVHSIGF 94 (261)
T ss_pred CCCcEEEECCcc
Confidence 379999998864
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.18 Score=44.73 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=52.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+. +++.. . ..|..+ .......+.+... +.+|
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR-QDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 3678999986 9999999999988999 9999999888766553 34321 1 224331 2333333333322 3789
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
+++.+.+
T Consensus 83 ~li~~ag 89 (257)
T PRK07067 83 ILFNNAA 89 (257)
T ss_pred EEEECCC
Confidence 9999876
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.13 Score=45.78 Aligned_cols=77 Identities=25% Similarity=0.340 Sum_probs=50.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----H-cCCc-eE--eCCCCCCchHHHHHHHHhCCC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----A-FGVT-EF--LNPNDNNEPVQQVIKRITDGG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~-lg~~-~v--i~~~~~~~~~~~~v~~~~~gg 256 (371)
.+.++||.|+ +++|...++.+...|+ +|+++++++++.+.+. + .+.. .. .|..+ ...+.+.+... +.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--g~ 81 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS-PEAREQLAAEA--GD 81 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHh--CC
Confidence 4789999986 8999999998888999 9999999887765532 1 2321 12 34431 22222222221 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 82 id~lv~~ag~ 91 (259)
T PRK06125 82 IDILVNNAGA 91 (259)
T ss_pred CCEEEECCCC
Confidence 9999998874
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.11 Score=46.23 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=52.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-H---c--CCce---EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---F--GVTE---FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~---l--g~~~---vi~~~~~~~~~~~~v~~~~~- 254 (371)
.+.++||+|+ |++|...+..+...|+ +|++++++.++.+.+. + . +... ..|..+ .......+.+...
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD-DEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 4789999986 8999999999988999 8999999887765442 2 2 2211 224431 2233333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|+++.+.|.
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 379999999974
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.17 Score=46.61 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=51.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc-----CCc-e--EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF-----GVT-E--FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l-----g~~-~--vi~~~~~~~~~~~~v~~~~~- 254 (371)
.+.+++|+|+ +++|.+.+..+...|+ +|+.+.++.++.+.+ .++ +.. . .+|..+ .......+.++..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d-~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS-LASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC-HHHHHHHHHHHHHh
Confidence 3678999986 8999999988888899 999999988765543 221 111 1 235441 2223333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+.+|++|.+.|.
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 378999998763
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.13 Score=50.95 Aligned_cols=79 Identities=18% Similarity=0.356 Sum_probs=55.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
++.++||+|+ +++|.+.++.+...|+ +|+.+.++.++.+.+ ++++... .+|..+ ...+...+.+... +++|
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD 81 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD-EAQIREGFEQLHREFGRID 81 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence 5788999986 8999999999999999 999999988876554 4565432 235442 3334444444332 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 82 ~li~nag~ 89 (520)
T PRK06484 82 VLVNNAGV 89 (520)
T ss_pred EEEECCCc
Confidence 99998764
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.18 Score=45.50 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=66.0
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCChh---hHHHH-HHcCCce--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKA-KAFGVTE--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~~---~~~~~-~~lg~~~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ +++|++.++.+...|+ +|+.+.++.+ +.+.+ ++++... ..|..+ .+.....+.+...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK-PEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4788999985 4899999988888999 8988888753 33322 4455332 235542 3334444444432
Q ss_pred CCccEEEEcCCCh--------------H---------------HHHHHHHHhccCCceEEEecCCCC
Q 017460 255 GGADYSFECIGDT--------------G---------------MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 255 gg~dvVid~~g~~--------------~---------------~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+.+|++|++.|.. + ..+..+..+..+ |+++.+++...
T Consensus 82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~~~ 147 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYLGG 147 (274)
T ss_pred CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecCCC
Confidence 3799999988731 0 123445556676 99998876543
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=52.20 Aligned_cols=77 Identities=21% Similarity=0.401 Sum_probs=59.1
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.++|+|.|.|.+|+..++.++..|. ++++++.++++.+.+++.|...++ |.+ +. +.+++.--..+|.++-+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat--~~---~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFYGDAT--RM---DLLESAGAAKAEVLINAID 473 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEEEeCC--CH---HHHHhcCCCcCCEEEEEeC
Confidence 3689999999999999999999999 999999999999999999876544 332 22 2233321127899999998
Q ss_pred ChHH
Q 017460 266 DTGM 269 (371)
Q Consensus 266 ~~~~ 269 (371)
+++.
T Consensus 474 d~~~ 477 (621)
T PRK03562 474 DPQT 477 (621)
T ss_pred CHHH
Confidence 7543
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.17 Score=44.77 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=30.4
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
..+|+|+|+|++|..++..+...|.+++..++.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 57899999999999999999999998888886543
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.11 Score=45.92 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=49.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
.+.++||+|+ |++|...++.+...|+ +|+++++++++. .....+. ...|..+ ...+.+.+..... +.+|++|
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~~--~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~vi 80 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPET--VDGRPAEFHAADVRD-PDQVAALVDAIVERHGRLDVLV 80 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhhh--hcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4789999986 8999999998888999 999998887651 1111121 1234431 2233333333322 3789999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 81 ~~ag~ 85 (252)
T PRK07856 81 NNAGG 85 (252)
T ss_pred ECCCC
Confidence 98873
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.39 Score=42.72 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=66.3
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHh-CCCc
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT-DGGA 257 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~-~gg~ 257 (371)
......++.+||-+|+|. |..+..+++.. +. +|++++.++...+.+++.+++.+. . +. ..+. .+.|
T Consensus 23 ~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~-~-----d~----~~~~~~~~f 90 (255)
T PRK14103 23 ARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART-G-----DV----RDWKPKPDT 90 (255)
T ss_pred HhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE-c-----Ch----hhCCCCCCc
Confidence 445667889999998865 66677777765 56 999999999999888876654222 1 11 1122 2379
Q ss_pred cEEEEcCC-----C-hHHHHHHHHHhccCCceEEEe
Q 017460 258 DYSFECIG-----D-TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 258 dvVid~~g-----~-~~~l~~~~~~l~~~~G~~v~~ 287 (371)
|+|+-... . ...+..+.+.|+++ |.++..
T Consensus 91 D~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~ 125 (255)
T PRK14103 91 DVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ 125 (255)
T ss_pred eEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence 99987442 2 23577888899998 998764
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.12 Score=51.65 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=56.6
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
++++|.|.|.+|+..++.++..|. .+++++.++++.+.+++.|...+.-.-+ + .+.+++.--..+|.++-+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~-~---~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAA-N---EEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCC-C---HHHHHhcCccccCEEEEEcCCh
Confidence 689999999999999999999998 9999999999999999988766553211 2 2223332112789888777654
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.15 Score=45.82 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=51.3
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCC---ce--EeCCCCCCchHHHHHHHHhC--
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGV---TE--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~---~~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. ..+. .. ..|..+ .+.+.. +.+...
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD-QNSIHN-FQLVLKEI 79 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC-HHHHHH-HHHHHHhc
Confidence 568999986 9999999998888899 9999988887665442 2221 11 225542 233333 444322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|+++.+.|.
T Consensus 80 ~~id~vv~~ag~ 91 (280)
T PRK06914 80 GRIDLLVNNAGY 91 (280)
T ss_pred CCeeEEEECCcc
Confidence 378999998864
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.34 Score=45.45 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=62.0
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHc--CCCEEEEEc--CChhhH-HHHHHcCCceEeCCCCCCchHHHHH------------
Q 017460 188 STVVIFGL-GTVGLSVAQGAKAR--GASRIIGVD--TNPEKC-EKAKAFGVTEFLNPNDNNEPVQQVI------------ 249 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~--G~~~vi~~~--~~~~~~-~~~~~lg~~~vi~~~~~~~~~~~~v------------ 249 (371)
.+|.|+|+ |++|..++.+.+.. .+ +|+++. ++.+++ +.++++++..++-.+ +.....+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~---~~~~~~l~~~l~~~~~~v~ 77 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVAD---EEAAKELKEALAAAGIEVL 77 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcC---HHHHHHHHHhhccCCceEE
Confidence 47899995 99999999988765 56 777774 444444 345778887655332 1222222
Q ss_pred ------HHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 250 ------KRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 250 ------~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.++... .+|+|+.++++...+...+.+++. |+-+.+
T Consensus 78 ~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~a--GK~VaL 120 (385)
T PRK05447 78 AGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRA--GKRIAL 120 (385)
T ss_pred EChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHC--CCcEEE
Confidence 233333 689999999886678888888887 444444
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.14 Score=45.42 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=46.4
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh-hHHHHHHcCCce--EeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~lg~~~--vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
+.++||+|+ |++|.+.++.+...|+ +|+++++++. +.+... .+... ..|.. +. +.+.+.. +++|++|+
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~--~~---~~~~~~~-~~iDilVn 85 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESND-ESPNEWIKWECG--KE---ESLDKQL-ASLDVLIL 85 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhc-cCCCeEEEeeCC--CH---HHHHHhc-CCCCEEEE
Confidence 678999986 8999999998888999 8998888762 222211 11112 23443 11 1223322 36999999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.|.
T Consensus 86 nAG~ 89 (245)
T PRK12367 86 NHGI 89 (245)
T ss_pred CCcc
Confidence 9874
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.095 Score=47.40 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=37.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~ 227 (371)
.++.++||+|+|+.+.+++.-+...|+++++++.|+.+|.+.+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L 167 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL 167 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence 3478999999999999999888889998999999999887666
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.17 Score=44.13 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=52.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||.|+ +++|.+.+..+...|+ +|+.+.+++++.+.+ ++.+... ..|..+ .++..+.+.+... +
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS-QESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4678999986 7899998888888999 899999988876543 3345332 224331 3333333333322 3
Q ss_pred -CccEEEEcCC
Q 017460 256 -GADYSFECIG 265 (371)
Q Consensus 256 -g~dvVid~~g 265 (371)
.+|++|.+.|
T Consensus 82 ~~iD~li~nag 92 (227)
T PRK08862 82 RAPDVLVNNWT 92 (227)
T ss_pred CCCCEEEECCc
Confidence 6999999986
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.23 Score=46.92 Aligned_cols=89 Identities=20% Similarity=0.137 Sum_probs=55.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++....+..++.|+..+ .++.+.+. ..|+|+-+..
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~sDvV~l~lP 264 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGAKFE-------EDLDAMLP-----KCDVVVINTP 264 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCceec-------CCHHHHHh-----hCCEEEEeCC
Confidence 57899999999999999999999999 99999887544444455554211 12222221 3566666555
Q ss_pred ChHH----H-HHHHHHhccCCceEEEec
Q 017460 266 DTGM----I-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~~----l-~~~~~~l~~~~G~~v~~g 288 (371)
.... + ...+..++++ ..+|.++
T Consensus 265 lt~~T~~li~~~~l~~mk~g-a~lIN~a 291 (386)
T PLN03139 265 LTEKTRGMFNKERIAKMKKG-VLIVNNA 291 (386)
T ss_pred CCHHHHHHhCHHHHhhCCCC-eEEEECC
Confidence 3221 1 2345556664 5555554
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.16 Score=44.83 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=51.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc-eE--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT-EF--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||.|+ |.+|.+.++.+...|+ +|+.++++.++.+.+. +.+.. .. .|..+ .....+.+.+... +
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE-MEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 3578999985 8999999999988999 9999999877655442 22322 12 24431 2333333333322 2
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
.+|+++.+.+
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6899999887
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=45.37 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=49.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eE--eCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EF--LNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~v--i~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
.+.++||+|+ |.+|...+..+...|+.+|+++.++.++.+. .+.. .+ .|..+ ...+.+.+.. . +.+|+||
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~-~~~~~~~~~~-~-~~id~vi 78 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD-PASVAAAAEA-A-SDVTILV 78 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC-HHHHHHHHHh-c-CCCCEEE
Confidence 4678999985 9999999999988998688888888776543 3221 12 24431 1222222221 1 2689999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 79 ~~ag~ 83 (238)
T PRK08264 79 NNAGI 83 (238)
T ss_pred ECCCc
Confidence 98876
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.12 Score=50.78 Aligned_cols=96 Identities=18% Similarity=0.347 Sum_probs=62.1
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcC-Cce-EeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFG-VTE-FLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg-~~~-vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+. +++ ... +... .+..+.+ ..+|+||.|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~----~dl~~al-----~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPL----DEMLACA-----AEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH----hhHHHHH-----hcCCEEEEc
Confidence 688999999999999999999999878999999998877664 453 221 1111 1111111 268999999
Q ss_pred CCChHH--HHHHHHHhccC---Cc---eEEEecCCC
Q 017460 264 IGDTGM--ITTALQSCCDG---WG---LAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~~--l~~~~~~l~~~---~G---~~v~~g~~~ 291 (371)
++.... ....++.+.+. .+ .++.++.+.
T Consensus 337 T~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 337 TSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred cCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 876542 23344443211 02 366777664
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.23 Score=44.88 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=55.3
Q ss_pred CCCCCEEEEEccCh-HHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 184 ISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 184 ~~~~~~VlI~Gag~-~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
.-.|.+|+|+|+|. +|...+.++...|+ .|+++.+... ++.+.+ ..+|+||.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~---------------------~L~~~~-----~~aDIvI~ 208 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQ---------------------NLPELV-----KQADIIVG 208 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCch---------------------hHHHHh-----ccCCEEEE
Confidence 35689999999876 99999999999999 8888865221 111111 26899999
Q ss_pred cCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 263 CIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 263 ~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
++|.+..+. .+.++++ ..++.+|..
T Consensus 209 AtG~~~~v~--~~~lk~g-avViDvg~n 233 (283)
T PRK14192 209 AVGKPELIK--KDWIKQG-AVVVDAGFH 233 (283)
T ss_pred ccCCCCcCC--HHHcCCC-CEEEEEEEe
Confidence 998765433 3557886 777788754
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.2 Score=44.45 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=50.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-HH----HHHHcCCc-e--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CE----KAKAFGVT-E--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-~~----~~~~lg~~-~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ +++|.+.++.+...|+ +|+++++++++ .+ .+++.+.. . ..|..+ .....+.+.+...
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS-KADLRAAVARTEAEL 84 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4678999985 8999999999988999 89888876532 22 22333432 1 224431 2333333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+.+|++|.+.|.
T Consensus 85 g~id~li~~ag~ 96 (254)
T PRK06114 85 GALTLAVNAAGI 96 (254)
T ss_pred CCCCEEEECCCC
Confidence 378999998874
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.27 Score=44.14 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=66.5
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHHh-
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRIT- 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~----~~lg~~~vi~~~~~~~~~~~~v~~~~- 253 (371)
...+..+..+||-+|.+ +|..++.+|+.++. .+|++++.+++..+.+ ++.|...-+... ..+..+.+.++.
T Consensus 112 ~L~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li--~GdA~e~L~~l~~ 188 (278)
T PLN02476 112 MLVQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK--HGLAAESLKSMIQ 188 (278)
T ss_pred HHHHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--EcCHHHHHHHHHh
Confidence 34566778999999863 36666677776632 2799999999887777 446664322221 233444454442
Q ss_pred ---CCCccEEEEcCCC---hHHHHHHHHHhccCCceEEEe
Q 017460 254 ---DGGADYSFECIGD---TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ---~gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.||.||--... ...++.+++.++++ |.++.=
T Consensus 189 ~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~D 227 (278)
T PLN02476 189 NGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVMD 227 (278)
T ss_pred cccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEe
Confidence 2379998643332 23478889999997 887654
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.24 Score=42.79 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=47.2
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEe--CCCCCCchHHHHHHHHhCC--CccEEE
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFL--NPNDNNEPVQQVIKRITDG--GADYSF 261 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi--~~~~~~~~~~~~v~~~~~g--g~dvVi 261 (371)
.++||+|+ |.+|...+..+... + +|+++++++++.+.+.+ +....++ |.. + .+.+.+.... ++|.||
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~--~---~~~~~~~~~~~~~id~vi 76 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDLT--D---PEAIAAAVEQLGRLDVLV 76 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCCC--C---HHHHHHHHHhcCCCCEEE
Confidence 57999986 99999888777666 6 89999998877665543 2111222 333 2 2334444333 699999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 77 ~~ag~ 81 (227)
T PRK08219 77 HNAGV 81 (227)
T ss_pred ECCCc
Confidence 98874
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.17 Score=44.86 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=51.1
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--CC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++.+... ..|..+ .+...+.+.+... ++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD-RDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 568899986 8999999999888999 999999887765443 2223221 224431 2233333333322 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 80 id~vi~~ag~ 89 (256)
T PRK08643 80 LNVVVNNAGV 89 (256)
T ss_pred CCEEEECCCC
Confidence 9999998864
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.1 Score=46.35 Aligned_cols=99 Identities=13% Similarity=-0.051 Sum_probs=65.0
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeCCCCCCchHHHHHHHHhCCCccEE-
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNPNDNNEPVQQVIKRITDGGADYS- 260 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~~~~~~~~~~~~v~~~~~gg~dvV- 260 (371)
..+.++|||+|+|- |.++-.++|+- ++|..++.+++=.+.++++-.. ..++.. .-.+...+.+...+.||+|
T Consensus 70 h~~pk~VLIiGGGD-Gg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~Dp--Rv~l~~~~~~~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFD-LELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNK--NFTHAKQLLDLDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCc-hHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCC--CEEEeehhhhccCCcCCEEE
Confidence 35568999998765 55677888886 3999999999988888873221 112111 1111112333333479996
Q ss_pred EEcCCChHHHHHHHHHhccCCceEEEec
Q 017460 261 FECIGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 261 id~~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+|+.-..+-.+.+.++|+++ |.++.-+
T Consensus 145 vDs~~~~~fy~~~~~~L~~~-Gi~v~Qs 171 (262)
T PRK00536 145 CLQEPDIHKIDGLKRMLKED-GVFISVA 171 (262)
T ss_pred EcCCCChHHHHHHHHhcCCC-cEEEECC
Confidence 56565556677889999998 9988754
|
|
| >KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.22 Score=45.17 Aligned_cols=56 Identities=27% Similarity=0.274 Sum_probs=46.9
Q ss_pred hhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcC---ChhhHHHHHHcCCceEe
Q 017460 180 NVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDT---NPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 180 ~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~lg~~~vi 236 (371)
....+.+|.++||=. +|..|...+-.+...|+ +++++.. +.+|+..+++||++.+.
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~ 155 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIIL 155 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEe
Confidence 456789999999997 59999999999999999 8888755 55888899999997543
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.13 Score=44.86 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=50.1
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhCC-CccEEEEc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDG-GADYSFEC 263 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~ 263 (371)
+.++||.|+ |.+|...+..+...|+ +|+++.++.++. +... ...|..+ ...+.+.+.+.... ++|++|.+
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-----~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~d~vi~~ 75 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAIDD-----FPGELFACDLAD-IEQTAATLAQINEIHPVDAIVNN 75 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCcccc-----cCceEEEeeCCC-HHHHHHHHHHHHHhCCCcEEEEC
Confidence 578999986 9999999998888998 999998876551 2211 2234431 33444445554444 78999998
Q ss_pred CCC
Q 017460 264 IGD 266 (371)
Q Consensus 264 ~g~ 266 (371)
.|.
T Consensus 76 ag~ 78 (234)
T PRK07577 76 VGI 78 (234)
T ss_pred CCC
Confidence 874
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.12 Score=42.37 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=48.9
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC--hhhHHHH----HHcCCce-Ee--CCCCCCchHHHHHHHHh--CC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN--PEKCEKA----KAFGVTE-FL--NPNDNNEPVQQVIKRIT--DG 255 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~--~~~~~~~----~~lg~~~-vi--~~~~~~~~~~~~v~~~~--~g 255 (371)
+++||+|+ +++|+..++.+...|..+|+.+.++ .++.+.+ +..+... ++ |..+ .++....+.+.. .+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSD-PESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTS-HHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 36899986 8999998887777776588888888 3433332 4445422 22 3331 233444444443 23
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|++|.+.|.
T Consensus 80 ~ld~li~~ag~ 90 (167)
T PF00106_consen 80 PLDILINNAGI 90 (167)
T ss_dssp SESEEEEECSC
T ss_pred ccccccccccc
Confidence 79999998875
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.17 Score=46.64 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=51.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC---Cc-e--EeCCCCCCchHHHHHHHHh--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG---VT-E--FLNPNDNNEPVQQVIKRIT--DG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg---~~-~--vi~~~~~~~~~~~~v~~~~--~g 255 (371)
++.++||+|+ |++|...++.+...|+ +|++++++.++.+.+ +++. .. . ..|..+ .......+.+.. .+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD-LDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC-HHHHHHHHHHHHHhCC
Confidence 4678999986 9999999988888898 999999988776544 3332 11 1 234431 223333333322 12
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 83 ~iD~li~nAg 92 (322)
T PRK07453 83 PLDALVCNAA 92 (322)
T ss_pred CccEEEECCc
Confidence 6999999887
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.18 Score=44.96 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=49.1
Q ss_pred CCCEEEEEcc-C--hHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g--~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ + ++|.+.++.+...|+ +|+...+++...+.+ ++.|.... +|..+ .+...+.+.+...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN-PKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC-HHHHHHHHHHHHHHc
Confidence 4688999986 4 799998888888899 888887764322222 23353322 35542 3344444444333
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+.+|+++++.|
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 37999999876
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=45.78 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=51.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC--c-e--EeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV--T-E--FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~--~-~--vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
.+.++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+ .+++. . . ..|..+ ...+.+.+..... ++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV-EDDVSRAVDFTVDKFGT 94 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence 3678999985 9999998888888899 999998877655433 33321 1 1 234441 2233333333322 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 95 id~li~~Ag~ 104 (280)
T PLN02253 95 LDIMVNNAGL 104 (280)
T ss_pred CCEEEECCCc
Confidence 9999998863
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.2 Score=44.38 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=50.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC---Cce-EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG---VTE-FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg---~~~-vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+ .++. +.. ..|..+ ...+...+.+... +++|
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d 79 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD-AASLAAALANAAAERGPVD 79 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 468999986 8999998888888898 899999988776554 3232 211 234431 2223333333322 3689
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 80 ~vi~~ag~ 87 (257)
T PRK07074 80 VLVANAGA 87 (257)
T ss_pred EEEECCCC
Confidence 99999874
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.19 Score=46.67 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=31.0
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.+|+|+|+|++|..++..+...|..++..++.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46799999999999999999999998888888764
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.2 Score=44.09 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=50.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-eEe--CCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-EFL--NPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~vi--~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |.+|...+..+...|+ +|++++++.++...+ ++.+.. .++ |..+ ...+.+.+.+... +
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRD-RAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 4678999986 9999999988888899 999999986654332 333322 122 4431 2233333333322 2
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|+||.+.+.
T Consensus 83 ~~d~vi~~ag~ 93 (251)
T PRK12826 83 RLDILVANAGI 93 (251)
T ss_pred CCCEEEECCCC
Confidence 68999998754
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.69 Score=40.65 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=60.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC-hhhH----HHHHHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKC----EKAKAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~-~~~~----~~~~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
+.++||.|+ |.+|...+.-+...|+ +++.+.++ +++. ..+++.+... . .|..+ ...+...+..+.. +
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST-REGCETLAKATIDRYG 83 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC-HHHHHHHHHHHHHHcC
Confidence 678999986 8999998888888999 77665543 2322 2233444321 2 24431 2233333333322 3
Q ss_pred CccEEEEcCCCh----------H---------------HHHHHHHHhccCCceEEEecCCCC
Q 017460 256 GADYSFECIGDT----------G---------------MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 256 g~dvVid~~g~~----------~---------------~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
++|+||.+.|.. . ..+.+.+.++.. |+++.+++...
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~ 144 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVAG 144 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchhc
Confidence 789999998731 0 123444555665 89999887543
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.25 Score=43.35 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=47.9
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC--Cc-eEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG--VT-EFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg--~~-~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
.++||+|+ |++|...+..+...|+ +|+++++++++.+.+.+.+ .. ...|..+ .+++.+.+.+. ....|.++.+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~-~~~~d~~i~~ 78 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQSANIFTLAFDVTD-HPGTKAALSQL-PFIPELWIFN 78 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCCCeEEEeeCCC-HHHHHHHHHhc-ccCCCEEEEc
Confidence 46899986 9999998888888899 8999999988877665433 21 1234441 23333333332 2245666655
Q ss_pred CC
Q 017460 264 IG 265 (371)
Q Consensus 264 ~g 265 (371)
.|
T Consensus 79 ag 80 (240)
T PRK06101 79 AG 80 (240)
T ss_pred Cc
Confidence 54
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.28 Score=44.49 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=65.3
Q ss_pred hcchhhhhHHhHhhhhcCC-CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVADI-SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~-~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||.....+..+ +..++ -.|.+|.|+|. +.+|.-.+.++...|+ .|++..+...
T Consensus 138 ~~PcTp~aii~lL-~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~--------------------- 194 (301)
T PRK14194 138 LTPCTPSGCLRLL-EDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST--------------------- 194 (301)
T ss_pred CCCCcHHHHHHHH-HHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC---------------------
Confidence 4555544444433 44444 46999999997 5999999999999999 8988865432
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+..+.++ ..|+||-++|.+..+...+ ++++ ..++.+|..
T Consensus 195 ~l~e~~~-----~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin 233 (301)
T PRK14194 195 DAKALCR-----QADIVVAAVGRPRLIDADW--LKPG-AVVIDVGIN 233 (301)
T ss_pred CHHHHHh-----cCCEEEEecCChhcccHhh--ccCC-cEEEEeccc
Confidence 1111111 4799999999877666544 8886 788888754
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.18 Score=46.12 Aligned_cols=94 Identities=10% Similarity=0.028 Sum_probs=63.9
Q ss_pred CCCCEEEEEccChHHHHHHHHHH-HcCCCEEEEEcCChhhHHHH-HHcC---CceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAK-ARGASRIIGVDTNPEKCEKA-KAFG---VTEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~-~~G~~~vi~~~~~~~~~~~~-~~lg---~~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
....+++|+|+|..|.+.+..+. ..+.++|.+..+++++.+.+ .++. ..... .+..+.+ .++|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~------~~~~~av-----~~aDi 191 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEP------LDGEAIP-----EAVDL 191 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEE------CCHHHHh-----hcCCE
Confidence 45678999999999999888875 46877899999999887655 3342 22111 1232333 26999
Q ss_pred EEEcCCChHHHHHHHHHhccCCceEEEecCCCC
Q 017460 260 SFECIGDTGMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 260 Vid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
|+.|+++...+-..+ ++++ -.+..+|....
T Consensus 192 VitaT~s~~Pl~~~~--~~~g-~hi~~iGs~~p 221 (304)
T PRK07340 192 VVTATTSRTPVYPEA--ARAG-RLVVAVGAFTP 221 (304)
T ss_pred EEEccCCCCceeCcc--CCCC-CEEEecCCCCC
Confidence 999998765432332 6775 67777887654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.2 Score=44.51 Aligned_cols=76 Identities=26% Similarity=0.404 Sum_probs=50.2
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceE--eCCCCCCchHHHHHHHHhC--CCccE
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF--LNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v--i~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.+.... .|..+ .++..+.+.+... +++|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSD-KDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC-HHHHHHHHHHHHHhcCCCCE
Confidence 6899986 8999999888888899 899999988775544 22232222 34431 2334444443322 37999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|.+.|.
T Consensus 80 li~naG~ 86 (259)
T PRK08340 80 LVWNAGN 86 (259)
T ss_pred EEECCCC
Confidence 9998874
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.32 Score=40.36 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=48.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++..++|.|+ +++|...+..+...|+ +|++++++.++.+.. ++.+... . .|..+ ...+.+.+.+... +
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEK-QGDWQRVISITLNAFS 92 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4778999986 7899998888888898 999998877654332 2334321 2 23321 2223333322221 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++.+.|.
T Consensus 93 ~iDilVnnAG~ 103 (169)
T PRK06720 93 RIDMLFQNAGL 103 (169)
T ss_pred CCCEEEECCCc
Confidence 68888887763
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.25 Score=43.80 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=50.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh--hHHHHHHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--KCEKAKAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
+|.++||+|+ |++|.+.++.+...|+ +|+.++++.. ..+.+++++.. . ..|..+ .++..+.+.+... +.+
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~~ 86 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRK-IDGIPALLERAVAEFGHI 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCCC
Confidence 3678999986 8999999999988999 8888765432 22334444432 1 234431 2333333433322 379
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|++|.+.|.
T Consensus 87 D~li~~Ag~ 95 (253)
T PRK08993 87 DILVNNAGL 95 (253)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.25 Score=44.03 Aligned_cols=79 Identities=27% Similarity=0.410 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ +++|...+..+...|+ +|+.+.+++++.+.+ ++.|... ..|..+ .....+.+.+... +
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD-EDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence 4678999986 8999998888888899 888888888765443 3334321 234431 2333333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.21 Score=44.37 Aligned_cols=79 Identities=28% Similarity=0.342 Sum_probs=50.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH---HcCCc---eEeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK---AFGVT---EFLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~---~lg~~---~vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
++.++||+|+ |.+|...+..+...|+ +|+.+.++.+..+.++ ..+.. ...|..+ .....+.+.+... +.
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~~ 82 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD-PASVAAAIKRAKEKEGR 82 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 4688999985 9999999998888999 8999988875433332 22322 1234431 2233333333322 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 83 id~vi~~ag~ 92 (263)
T PRK08226 83 IDILVNNAGV 92 (263)
T ss_pred CCEEEECCCc
Confidence 8999998873
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.23 Score=43.54 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=51.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-eE--eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-EF--LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
++.++||.|+ |.+|...+..+...|+ .|+...++.++.+.+ ..++.. .+ .|..+ ...+.+.+.+... +++|
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id 82 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD-RDEVKALGQKAEADLEGVD 82 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4678999986 9999999988888998 888888887776654 334432 12 24331 2233333333222 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
.+|.+.|.
T Consensus 83 ~vi~~ag~ 90 (245)
T PRK12936 83 ILVNNAGI 90 (245)
T ss_pred EEEECCCC
Confidence 99999874
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.24 Score=43.82 Aligned_cols=79 Identities=25% Similarity=0.389 Sum_probs=52.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.+++|.|+ |.+|...+..+...|+ +|+.+.+++++.+.+ ++.+.. . ..|..+ ..++.+.+..... +
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD-EEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence 4789999986 8999999988888899 999999987765443 333431 1 224431 2333333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|.+|.+.|.
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 78999998874
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.21 Score=45.14 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=63.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHHcC-----CceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFG-----VTEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~lg-----~~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
++++|+-+|+|+.++.++.++..+. -.+++.++.+++..+.++++- ...-+... ..+..+. .. ..++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~--~~Da~~~-~~-~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFH--TADVMDV-TE-SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEE--ECchhhc-cc-ccCCcCE
Confidence 7799999999999999988886553 238999999999888876533 21111111 1111111 00 1248999
Q ss_pred EEEcC-------CChHHHHHHHHHhccCCceEEEe
Q 017460 260 SFECI-------GDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 260 Vid~~-------g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
||-.+ .-...++...+.|++| |.++.=
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr 232 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLR 232 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcCCC-cEEEEe
Confidence 98764 2223678889999997 876654
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.25 Score=45.37 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=54.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++.++.. +...... ..++.+.+. ..|+|+-+..
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~~----~~~l~e~l~-----~aDvvv~~lP 199 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFAG----REELSAFLS-----QTRVLINLLP 199 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeecc----cccHHHHHh-----cCCEEEECCC
Confidence 57899999999999999999999999 9999987554321 1111110 112222221 4677777666
Q ss_pred ChHH----H-HHHHHHhccCCceEEEec
Q 017460 266 DTGM----I-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~~----l-~~~~~~l~~~~G~~v~~g 288 (371)
.+.. + ...+..++++ ..+|.+|
T Consensus 200 lt~~T~~li~~~~l~~mk~g-a~lIN~a 226 (312)
T PRK15469 200 NTPETVGIINQQLLEQLPDG-AYLLNLA 226 (312)
T ss_pred CCHHHHHHhHHHHHhcCCCC-cEEEECC
Confidence 4321 1 2455666765 6666664
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.16 Score=51.22 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=65.4
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
++|+|.|.|.+|+..++.++..|. .+++++.++++.+.+++.|...++ |.. ++ +.+++.--..+|.++-++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat--~~---~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYGDAT--QL---ELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEeeCC--CH---HHHHhcCCccCCEEEEEeCC
Confidence 679999999999999999999999 999999999999999999876555 332 22 22333211278999999987
Q ss_pred hHHHHHH---HHHhccCCceEEE
Q 017460 267 TGMITTA---LQSCCDGWGLAVT 286 (371)
Q Consensus 267 ~~~l~~~---~~~l~~~~G~~v~ 286 (371)
++..... .+...+. -+++.
T Consensus 475 ~~~n~~i~~~~r~~~p~-~~Iia 496 (601)
T PRK03659 475 PEDTMKIVELCQQHFPH-LHILA 496 (601)
T ss_pred HHHHHHHHHHHHHHCCC-CeEEE
Confidence 5433222 3344454 45544
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.24 Score=42.81 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=30.4
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
..+|+|+|+|++|...+..+...|..+++.++.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5689999999999999999988999889998876
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.21 Score=45.65 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=50.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc-----CCc-e--EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF-----GVT-E--FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l-----g~~-~--vi~~~~~~~~~~~~v~~~~~- 254 (371)
.+.+|||.|+ |++|...+..+...|+ +|+++.++.++.+.+ +++ +.. . .+|..+ .......+.++..
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS-LASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHhh
Confidence 4688999986 9999999988888899 899998887765432 111 111 1 234431 2333333333332
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 93 ~~~iD~li~nAg 104 (306)
T PRK06197 93 YPRIDLLINNAG 104 (306)
T ss_pred CCCCCEEEECCc
Confidence 37999999887
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.22 Score=43.59 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=51.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||.|+ |.+|...+..+...|+ +|+++++++++.+.+ +..+... + .|..+ ...+.+.++.... +
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSD-YEEVTAAIEQLKNELG 83 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 3578999986 8999999988888999 999999987765433 2233221 2 23331 2333333443322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 78999998864
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.24 Score=44.53 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCChh---hHHHH-HHcCCce--EeCCCCCCchHHHHHHHHhC
Q 017460 184 ISKGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKA-KAFGVTE--FLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 184 ~~~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~~---~~~~~-~~lg~~~--vi~~~~~~~~~~~~v~~~~~ 254 (371)
+-.++++||+|+ +++|.+.+..+...|+ +|+.+.++++ +.+.+ ++++... ..|..+ .+.....+.+...
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~ 84 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD-EASIDAVFETLEK 84 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC-HHHHHHHHHHHHH
Confidence 445788999985 5899999888888999 8888876642 33333 3445322 234431 2334444443332
Q ss_pred --CCccEEEEcCC
Q 017460 255 --GGADYSFECIG 265 (371)
Q Consensus 255 --gg~dvVid~~g 265 (371)
+.+|+++.+.|
T Consensus 85 ~~g~iD~lv~nAG 97 (272)
T PRK08159 85 KWGKLDFVVHAIG 97 (272)
T ss_pred hcCCCcEEEECCc
Confidence 37899999876
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.16 Score=47.98 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
.+.+|+|+|+|++|..++..+...|..+++.++.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999999999999999999999899999876
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.32 Score=43.98 Aligned_cols=67 Identities=21% Similarity=0.364 Sum_probs=49.2
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
+|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|....... +. +.+ ..+|+||-|+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~~~-----~~-~~~-----~~aDlVilavp~~ 68 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEAST-----DL-SLL-----KDCDLVILALPIG 68 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCcccccC-----CH-hHh-----cCCCEEEEcCCHH
Confidence 58899999999988888877898 99999999999888888775211111 11 111 2689999998854
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.2 Score=46.52 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=31.0
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
..+|+|+|+|++|..++..+...|..++..++.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 47799999999999999999899998999998763
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.2 Score=44.80 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=48.6
Q ss_pred CCCEEEEEccC---hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCceE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGLG---TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Gag---~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|++ ++|.+.+..+...|+ +|+.+.+++...+.+++ .+.... .|..+ .+++...+.+...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE-DASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC-HHHHHHHHHHHHhhc
Confidence 47889999863 799998888888899 88888776421222322 232122 34442 3334444444333
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+.+|++|++.|
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 36899999887
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.13 Score=45.77 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=49.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
+|.++||+|+ +++|.+.+..+...|+ +|+.+.+++.+.. ... ...|..+ .....+.+.+... +.+|++|
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~~~~~~D~~~-~~~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DVDYFKVDVSN-KEQVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4689999986 8999999999999999 9999888765432 111 1234441 2334444444332 3699999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 78 ~~Ag~ 82 (258)
T PRK06398 78 NNAGI 82 (258)
T ss_pred ECCCC
Confidence 98773
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.23 Score=44.63 Aligned_cols=78 Identities=32% Similarity=0.397 Sum_probs=51.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+.. . ..|..+ .......+..... +
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD-KESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4688999986 8999999999888999 899999887665443 223332 1 234431 2233333333322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 7999999887
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.28 Score=43.52 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=50.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++.++ ++.+.+ .+.+.. . .+|..+ .......+.+... +
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK-PESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999986 8999999999988999 88888777 333222 333432 1 234441 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 91 ~id~li~~ag~ 101 (258)
T PRK06935 91 KIDILVNNAGT 101 (258)
T ss_pred CCCEEEECCCC
Confidence 78999998874
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.23 Score=50.89 Aligned_cols=113 Identities=24% Similarity=0.302 Sum_probs=68.1
Q ss_pred eeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC
Q 017460 141 FSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT 219 (371)
Q Consensus 141 ~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~ 219 (371)
..+|.-+++.-.+.+ +.++.+++-.-..+ ....-.+.++||+|+ |++|.+.++.+...|+ +|+++++
T Consensus 379 ~~~~~~~~~~~~f~~-eyw~~e~~kl~~~~----------~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 379 VSEYVSLPEQEAFDI-EYWPLEEAKLRRMP----------KEKTLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred ccceecCchhhccch-hhhhhhHHhhccCC----------CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 355666666666666 55555555321100 011124789999986 9999999988888899 9999999
Q ss_pred ChhhHHHHH-H----cCCc----eEeCCCCCCchHHHHHHHHhC--CCccEEEEcCCC
Q 017460 220 NPEKCEKAK-A----FGVT----EFLNPNDNNEPVQQVIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 220 ~~~~~~~~~-~----lg~~----~vi~~~~~~~~~~~~v~~~~~--gg~dvVid~~g~ 266 (371)
+.++.+.+. + .+.. ...|..+ ...+.+.+.+... +++|++|.+.|.
T Consensus 447 ~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd-~~~v~~a~~~i~~~~g~iDilV~nAG~ 503 (676)
T TIGR02632 447 NLEAAEAVAAEINGQFGAGRAVALKMDVTD-EQAVKAAFADVALAYGGVDIVVNNAGI 503 (676)
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEEECCCCC-HHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence 887665442 2 2321 1234431 2333344443322 379999998874
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.35 Score=43.85 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=64.6
Q ss_pred hcchhhhhHHhHhhhhcCC-CCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEc-CChhhHHHHHHcCCceEeCCCCCC
Q 017460 166 LLSCGLSAGLGAAWNVADI-SKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVD-TNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~-~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~-~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
.+||.....+..+ +..++ -.|.+|+|+| .+.+|.-.+.++...|+ .|++.. ++.
T Consensus 137 ~~PcTp~ai~~ll-~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~--------------------- 193 (296)
T PRK14188 137 LVPCTPLGCMMLL-RRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR--------------------- 193 (296)
T ss_pred CcCCCHHHHHHHH-HHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC---------------------
Confidence 4555544444433 44443 4699999999 69999999999999999 888884 332
Q ss_pred chHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+..+.++ ..|+|+-++|.+..+...+ +++| ..++.+|...
T Consensus 194 -~l~e~~~-----~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin~ 233 (296)
T PRK14188 194 -DLPAVCR-----RADILVAAVGRPEMVKGDW--IKPG-ATVIDVGINR 233 (296)
T ss_pred -CHHHHHh-----cCCEEEEecCChhhcchhe--ecCC-CEEEEcCCcc
Confidence 1111111 4799999999877666544 7886 7888888653
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.21 Score=44.93 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=53.7
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc------eEeCCCCCCchH---HHHHH
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT------EFLNPNDNNEPV---QQVIK 250 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~------~vi~~~~~~~~~---~~~v~ 250 (371)
-.|..+||+|+ .++|.+.+..+...|+ +|+.+.+++++.+..+ ..+.. .+.|... .++. .+...
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSK-EVDVEKLVEFAV 83 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCC-HHHHHHHHHHHH
Confidence 35788899985 8999999999999999 9999999998865542 22321 2334431 2222 22222
Q ss_pred HHhCCCccEEEEcCCC
Q 017460 251 RITDGGADYSFECIGD 266 (371)
Q Consensus 251 ~~~~gg~dvVid~~g~ 266 (371)
+...|++|+.++..|.
T Consensus 84 ~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGA 99 (270)
T ss_pred HHhCCCCCEEEEcCCc
Confidence 3334589999998774
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.35 Score=42.01 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=61.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
-+|.+||=+|+|+ |+++.-+|+ +|+ +|++++.+++..+.++.-.... .+++. ...+.++.. +.||+|
T Consensus 58 l~g~~vLDvGCGg-G~Lse~mAr-~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~------~~~~edl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGG-GILSEPLAR-LGA-SVTGIDASEKPIEVAKLHALESGVNIDYR------QATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCc-cHhhHHHHH-CCC-eeEEecCChHHHHHHHHhhhhccccccch------hhhHHHHHhcCCCccEE
Confidence 4688999999753 555555554 578 9999999999888886432221 24553 123333433 389999
Q ss_pred EE-----cCCChH-HHHHHHHHhccCCceEEEe
Q 017460 261 FE-----CIGDTG-MITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 261 id-----~~g~~~-~l~~~~~~l~~~~G~~v~~ 287 (371)
+. -+..++ .++.+.++++|+ |.++..
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvkP~-G~lf~S 160 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVKPG-GILFLS 160 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcCCC-cEEEEe
Confidence 75 344433 477899999997 887654
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.15 Score=40.54 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=28.9
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
..+|+|.|+|++|...+..+-..|+.++..++.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999988888899888888753
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.71 Score=40.28 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=60.5
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~~vi~~~~~~~~~~~~v~~~~~g 255 (371)
+...+++|++||=.|+|+ |..+..+++..+..+|++++.+++..+.+.+. .-...+..+ ... ......+ ..
T Consensus 66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D--~~~-~~~~~~l-~~ 140 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILAD--ARK-PERYAHV-VE 140 (226)
T ss_pred hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECC--CCC-cchhhhc-cc
Confidence 346889999999998753 44455566665433899999999876654322 111222111 111 0000111 12
Q ss_pred CccEEEEcCCChH----HHHHHHHHhccCCceEEEe
Q 017460 256 GADYSFECIGDTG----MITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 256 g~dvVid~~g~~~----~l~~~~~~l~~~~G~~v~~ 287 (371)
.+|+|+--...+. .++.+.+.|+++ |+++..
T Consensus 141 ~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~ 175 (226)
T PRK04266 141 KVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA 175 (226)
T ss_pred cCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence 5999985444321 367888899998 998874
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.39 Score=43.70 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=50.4
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.... .+..+.+. ..|+||.|+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~vp~~~ 67 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAVTA-------ETARQVTE-----QADVIFTMVPDSP 67 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCccc-------CCHHHHHh-----cCCEEEEecCCHH
Confidence 37788999999988887778898 99999999999988888776311 11212221 4788888887654
Q ss_pred HHH
Q 017460 269 MIT 271 (371)
Q Consensus 269 ~l~ 271 (371)
.++
T Consensus 68 ~~~ 70 (291)
T TIGR01505 68 QVE 70 (291)
T ss_pred HHH
Confidence 443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.24 Score=45.25 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHH---HHHHcCC-c---eEe--CCCCCCchHHHHHHHHhCC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE---KAKAFGV-T---EFL--NPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~---~~~~lg~-~---~vi--~~~~~~~~~~~~v~~~~~g 255 (371)
.+..|+|+|| |-+|...+..+...|+ +|.++.|++++.+ .+++|.. . .++ |..+ ...|.+.+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY-~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d-~~sf~~ai~----- 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY-TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLD-EGSFDKAID----- 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC-EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccc-cchHHHHHh-----
Confidence 5688999997 8999999999999999 9999999988643 4666652 1 122 3321 234444432
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
|+|.||.+..
T Consensus 78 gcdgVfH~As 87 (327)
T KOG1502|consen 78 GCDGVFHTAS 87 (327)
T ss_pred CCCEEEEeCc
Confidence 7899988664
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.55 Score=36.12 Aligned_cols=87 Identities=16% Similarity=0.267 Sum_probs=59.5
Q ss_pred EEEEEccChHHHHHHHHHHHc--CCCEEE-EEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 189 TVVIFGLGTVGLSVAQGAKAR--GASRII-GVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~--G~~~vi-~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+|.|+|.|..|.....-++.. +. +++ ++++++++.+.+ +++|.. .+. ++.+.+.. ..+|+|+-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~-~~~------~~~~ll~~---~~~D~V~I~t 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIP-VYT------DLEELLAD---EDVDAVIIAT 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSE-EES------SHHHHHHH---TTESEEEEES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhccc-chh------HHHHHHHh---hcCCEEEEec
Confidence 578999999998877555554 45 554 456777776654 678876 332 23333322 2799999999
Q ss_pred CChHHHHHHHHHhccCCceEEEec
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
......+.+..++.. |.-+.+.
T Consensus 71 p~~~h~~~~~~~l~~--g~~v~~E 92 (120)
T PF01408_consen 71 PPSSHAEIAKKALEA--GKHVLVE 92 (120)
T ss_dssp SGGGHHHHHHHHHHT--TSEEEEE
T ss_pred CCcchHHHHHHHHHc--CCEEEEE
Confidence 987788888888887 5555553
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.27 Score=43.27 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=51.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-eE--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-EF--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+ ++.+.. .+ .|..+ ...+.+.+..... +
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD-RDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 3678999986 9999999999988999 899998888765544 222322 22 24331 2233333333322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 7899999887
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.28 Score=48.13 Aligned_cols=69 Identities=29% Similarity=0.377 Sum_probs=49.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh-----hHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE-----KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~-----~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
.+.+|+|+|+|.+|+.++.+++..|+ +|++++.++. ..+.+++.|+....+.. .. ...++|+|
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~--~~---------~~~~~D~V 82 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPG--PT---------LPEDTDLV 82 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCC--cc---------ccCCCCEE
Confidence 46789999999999999999999999 8999886542 23456777876544332 11 01257888
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
+-+.|-
T Consensus 83 v~s~Gi 88 (480)
T PRK01438 83 VTSPGW 88 (480)
T ss_pred EECCCc
Confidence 887775
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.29 Score=42.93 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=30.5
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.+|+|+|+|++|..++..+...|.++++.++.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 56899999999999999999999998898887543
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.18 Score=45.10 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=52.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh----hHHHHHHcCC-c-eEeCCCCCCchHHHHHHHHhCC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE----KCEKAKAFGV-T-EFLNPNDNNEPVQQVIKRITDG--G 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~----~~~~~~~lg~-~-~vi~~~~~~~~~~~~v~~~~~g--g 256 (371)
.|+.|||+|+ +++|++.++=...+|+ +++..+.+.+ ..+.+++.|- . .+.|..+ .++.....++.... .
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~-~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD-REEIYRLAKKVKKEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence 5899999986 7999987777777888 8888887765 3444555552 1 2445542 34444443433333 7
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++++.+|-
T Consensus 115 V~ILVNNAGI 124 (300)
T KOG1201|consen 115 VDILVNNAGI 124 (300)
T ss_pred ceEEEecccc
Confidence 9999998874
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.31 Score=43.17 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=48.4
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHH----HHHcCCc-eE--eCCCCCCchHHHHHHHHhC--C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEK----AKAFGVT-EF--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~----~~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++++||+|+ +++|...++.+...|+ +|+.+.+ +.++.+. ++.+|.. .. .|..+ .......+.+... +
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD-LPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 468999986 8999999999988999 8877644 4444333 2344542 22 34431 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 80 ~id~li~~ag~ 90 (256)
T PRK12743 80 RIDVLVNNAGA 90 (256)
T ss_pred CCCEEEECCCC
Confidence 78999998873
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.2 Score=47.62 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=51.5
Q ss_pred cCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHH-------HHHHc-CCceE-eCCCCCCchHHHHHHH
Q 017460 182 ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE-------KAKAF-GVTEF-LNPNDNNEPVQQVIKR 251 (371)
Q Consensus 182 ~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~-------~~~~l-g~~~v-i~~~~~~~~~~~~v~~ 251 (371)
.+...+.+|||+|+ |.+|...+..+...|+ +|++++++..+.. ..... ++..+ .|..+ .+.+...++.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~ 132 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD-ADSLRKVLFS 132 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC-HHHHHHHHHH
Confidence 34566789999986 9999999999888999 9999988775431 11122 33322 24441 2223222222
Q ss_pred HhCCCccEEEEcCCC
Q 017460 252 ITDGGADYSFECIGD 266 (371)
Q Consensus 252 ~~~gg~dvVid~~g~ 266 (371)
. +.++|+||+|.+.
T Consensus 133 ~-~~~~D~Vi~~aa~ 146 (390)
T PLN02657 133 E-GDPVDVVVSCLAS 146 (390)
T ss_pred h-CCCCcEEEECCcc
Confidence 1 1169999998863
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.26 Score=43.44 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=50.5
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHh--CCCc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRIT--DGGA 257 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~--~gg~ 257 (371)
.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ .+.. ...|..+ ..++.+.+.... .+++
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK-EDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhcCCC
Confidence 57999986 9999999988888999 99999998877655532 2321 1234442 233333333332 1368
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+||.+.+.
T Consensus 80 d~vi~~a~~ 88 (255)
T TIGR01963 80 DILVNNAGI 88 (255)
T ss_pred CEEEECCCC
Confidence 999987753
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.11 Score=46.92 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=58.9
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
..+.++||+|+|++|.+++..+...|+.+|+++.|+.++.+.+ ++++....+... . +..+.+ ..+|+||++
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~--~-~~~~~~-----~~~DivIna 192 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELD--L-ELQEEL-----ADFDLIINA 192 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeec--c-cchhcc-----ccCCEEEEC
Confidence 4567899999999999999999999966999999999887665 334321101110 0 000000 268999999
Q ss_pred CCChHH-----HHHHHHHhccCCceEEEe
Q 017460 264 IGDTGM-----ITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 264 ~g~~~~-----l~~~~~~l~~~~G~~v~~ 287 (371)
++.... .......+.+. ..++.+
T Consensus 193 Tp~g~~~~~~~~~~~~~~l~~~-~~v~Di 220 (278)
T PRK00258 193 TSAGMSGELPLPPLPLSLLRPG-TIVYDM 220 (278)
T ss_pred CcCCCCCCCCCCCCCHHHcCCC-CEEEEe
Confidence 875310 01123455554 555555
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.1 Score=39.38 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=60.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc-CChhhHHHH----HHcCCce---EeCCCCCCchH---HHHHHHH-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKCEKA----KAFGVTE---FLNPNDNNEPV---QQVIKRI- 252 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~-~~~~~~~~~----~~lg~~~---vi~~~~~~~~~---~~~v~~~- 252 (371)
.+.++||+|+ +++|.+.++.+...|+ +|+++. ++.++.+.+ ++.+... ..|..+ .... .+.+.+.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES-LHGVEALYSSLDNEL 80 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCC-HHHHHHHHHHHHHHh
Confidence 4678999985 8999999999989999 787764 444443322 2223221 123321 1122 2222221
Q ss_pred ---hC-CCccEEEEcCCCh----------H---------------HHHHHHHHhccCCceEEEecCCCC
Q 017460 253 ---TD-GGADYSFECIGDT----------G---------------MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 253 ---~~-gg~dvVid~~g~~----------~---------------~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
.+ +++|+++.+.|.. + .++.++..+... |+++.+++...
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-g~iv~isS~~~ 148 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-SRIINISSAAT 148 (252)
T ss_pred hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-CeEEEECCccc
Confidence 12 2799999988731 0 122345556665 89999887544
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.3 Score=42.61 Aligned_cols=74 Identities=22% Similarity=0.361 Sum_probs=55.0
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH--HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK--AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~--~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
.++|+|+|.+|...++.+...|. .|++++.++++.+... ++....+.-.. .-.+.++++--..+|+++-+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~----t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVVIGDA----TDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceEEEEecC----CCHHHHHhcCCCcCCEEEEeeCC
Confidence 57899999999999999999998 9999999999987743 36665443221 22334444422279999999987
Q ss_pred h
Q 017460 267 T 267 (371)
Q Consensus 267 ~ 267 (371)
+
T Consensus 77 d 77 (225)
T COG0569 77 D 77 (225)
T ss_pred C
Confidence 4
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.65 Score=40.86 Aligned_cols=74 Identities=28% Similarity=0.360 Sum_probs=48.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
+++++||+|+ |.+|...+..+...|+ +|++++++. ++..+.. . ..|..+ ...+.+.+.+... +.+|+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~ 79 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSD-AAAVAQVCQRLLAETGPLDV 79 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 4678999986 8999999998888999 999998876 2222221 1 124431 2233333333322 36899
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|.+.|.
T Consensus 80 vi~~ag~ 86 (252)
T PRK08220 80 LVNAAGI 86 (252)
T ss_pred EEECCCc
Confidence 9998874
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.29 Score=43.97 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=49.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-------HH----HHHHcCCce---EeCCCCCCchHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-------CE----KAKAFGVTE---FLNPNDNNEPVQQVIK 250 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-------~~----~~~~lg~~~---vi~~~~~~~~~~~~v~ 250 (371)
++.++||+|+ |++|...+..+...|+ +|+++.++.++ ++ .++..+... ..|..+ .+...+.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD-EDQVAAAVA 82 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHH
Confidence 4678999986 8999999998888899 89998876542 11 123334321 235442 233333333
Q ss_pred HHhC--CCccEEEEcCCC
Q 017460 251 RITD--GGADYSFECIGD 266 (371)
Q Consensus 251 ~~~~--gg~dvVid~~g~ 266 (371)
+... +.+|++|.+.|.
T Consensus 83 ~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 83 KAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 3221 379999998874
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.35 Score=41.82 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=60.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEe------C--CCCCCchHHHHHHHHh--
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFL------N--PNDNNEPVQQVIKRIT-- 253 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi------~--~~~~~~~~~~~v~~~~-- 253 (371)
.++.+||+.|+|. |.-++.+|. .|. .|++++.++.-.+.+ ++.+..... . ...+-.-+...+.++.
T Consensus 33 ~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 5678999999874 777777774 699 999999999877764 333321000 0 0000000000011111
Q ss_pred -CCCccEEEEcCCC--------hHHHHHHHHHhccCCceEEEecC
Q 017460 254 -DGGADYSFECIGD--------TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 254 -~gg~dvVid~~g~--------~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+.||.|+|...- ...++...++|+++ |+++.++.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~ 153 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITL 153 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEE
Confidence 1368999996531 23477888999998 98766644
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.48 Score=43.90 Aligned_cols=85 Identities=25% Similarity=0.275 Sum_probs=55.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...+..++..|. +|++.+++++......+ . ..++.+.+. ..|+|+-+..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~~~--------~---~~~l~ell~-----~aDiVil~lP 207 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDFLT--------Y---KDSVKEAIK-----DADIISLHVP 207 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhhhh--------c---cCCHHHHHh-----cCCEEEEeCC
Confidence 56789999999999999999999999 99999887654321100 1 112222221 4788888777
Q ss_pred ChH-----HHHHHHHHhccCCceEEEec
Q 017460 266 DTG-----MITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~-----~l~~~~~~l~~~~G~~v~~g 288 (371)
... .....+..++++ ..+|..+
T Consensus 208 ~t~~t~~li~~~~l~~mk~g-avlIN~a 234 (330)
T PRK12480 208 ANKESYHLFDKAMFDHVKKG-AILVNAA 234 (330)
T ss_pred CcHHHHHHHhHHHHhcCCCC-cEEEEcC
Confidence 542 123455667775 6666664
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.28 Score=41.83 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=30.1
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
+.+|+|+|+|++|.-.+..+-..|.+++..++.+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 5789999999999999999999999888888754
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.4 Score=44.78 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC-----ceEeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-----TEFLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-----~~vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
.|.+|.|+|.|.+|..+++.++.+|+ +|++.+++..+.. ...++. ....+......++.+.+. ..|+|
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~ell~-----~aDiV 230 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEP-EDGLLIPNGDVDDLVDEKGGHEDIYEFAG-----EADIV 230 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhh-hhhhccccccccccccccCcccCHHHHHh-----hCCEE
Confidence 47899999999999999999999999 9999987633211 111110 001100000122333322 46888
Q ss_pred EEcCCChHH-----HHHHHHHhccCCceEEEec
Q 017460 261 FECIGDTGM-----ITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 261 id~~g~~~~-----l~~~~~~l~~~~G~~v~~g 288 (371)
+-+...+.. -...+..++++ ..+|.++
T Consensus 231 vl~lPlt~~T~~li~~~~l~~Mk~g-a~lINva 262 (347)
T PLN02928 231 VLCCTLTKETAGIVNDEFLSSMKKG-ALLVNIA 262 (347)
T ss_pred EECCCCChHhhcccCHHHHhcCCCC-eEEEECC
Confidence 887763221 24567778886 7777775
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.43 Score=42.46 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=64.8
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhC-CCc
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITD-GGA 257 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~-gg~ 257 (371)
....+.++++||-+|+|. |..+..+++..+..+|++++.++...+.+++.-.. .++.. +. ..+.. ..+
T Consensus 25 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~-----d~----~~~~~~~~f 94 (258)
T PRK01683 25 ARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA-----DI----ASWQPPQAL 94 (258)
T ss_pred hhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC-----ch----hccCCCCCc
Confidence 445667889999998764 56677788776433999999999988888664321 22221 11 11122 379
Q ss_pred cEEEEcCCC------hHHHHHHHHHhccCCceEEEe
Q 017460 258 DYSFECIGD------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 258 dvVid~~g~------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
|+|+....- ...++.+.+.|+++ |.++..
T Consensus 95 D~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~ 129 (258)
T PRK01683 95 DLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQ 129 (258)
T ss_pred cEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEE
Confidence 999765431 23578888899997 998775
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.27 Score=41.43 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=61.7
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vi~~~~~~~~~~~~v~~~~ 253 (371)
....+.++++||=+|+|. |..++.+++.....+|++++.+++..+.+++ ++... ++.. +... ..
T Consensus 25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~-----d~~~----~~ 94 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG-----EAPI----EL 94 (187)
T ss_pred HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec-----Cchh----hc
Confidence 445667889999888764 6666666766532399999999987776643 44322 2221 1111 11
Q ss_pred CCCccEEEEcCCC---hHHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFECIGD---TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.+|+|+..... ...++.+.+.|+++ |+++..
T Consensus 95 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~ 130 (187)
T PRK08287 95 PGKADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLT 130 (187)
T ss_pred CcCCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEE
Confidence 2379999864321 23567888999997 998764
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.028 Score=45.61 Aligned_cols=93 Identities=23% Similarity=0.229 Sum_probs=55.4
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC----CCchHHHHHHHHhCCCccEEEEcCC
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND----NNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~----~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
|+|+|+|++|...+..++..|. .|..+.+.+ +.+.+++.|....-...+ ........ ....+.+|+||-|+-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEEEec
Confidence 6899999999988888877998 999998888 777777666421111100 00000000 111238999999997
Q ss_pred ChHHHHHHHHHhc----cCCceEEEec
Q 017460 266 DTGMITTALQSCC----DGWGLAVTLG 288 (371)
Q Consensus 266 ~~~~l~~~~~~l~----~~~G~~v~~g 288 (371)
.. .++.++..++ +. ..++.+-
T Consensus 77 a~-~~~~~l~~l~~~~~~~-t~iv~~q 101 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPN-TTIVSLQ 101 (151)
T ss_dssp GG-GHHHHHHHHCTGEETT-EEEEEES
T ss_pred cc-chHHHHHHHhhccCCC-cEEEEEe
Confidence 64 3444555444 43 4566553
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.36 Score=42.70 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ +++|...+..+...|+ +++.++++.++.+.+ ++.+... ..|..+ .+...+.+..... +
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 3789999986 8999999988888999 888888887765443 2233321 235441 2333343333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++.+.|.
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 78999998873
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.28 Score=43.45 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=60.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc--CCceE-eCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF--GVTEF-LNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l--g~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
.+.+|||+|+ |.+|...+..+...|+ +|+++.+++++....... ++..+ .|.. +. .+.+.+....++|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~--d~--~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVT--EG--SDKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCC--CC--HHHHHHHhhcCCCEEE
Confidence 4678999996 9999999888888898 899988888765433221 23222 2443 11 1223232222799999
Q ss_pred EcCCChH-------------HHHHHHHHhccC-CceEEEecCC
Q 017460 262 ECIGDTG-------------MITTALQSCCDG-WGLAVTLGVP 290 (371)
Q Consensus 262 d~~g~~~-------------~l~~~~~~l~~~-~G~~v~~g~~ 290 (371)
.+.|... ....+++.+... .++++.+++.
T Consensus 91 ~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~ 133 (251)
T PLN00141 91 CATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI 133 (251)
T ss_pred ECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence 8876421 123344444432 2678887664
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.34 Score=44.43 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=49.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh----------hhHH----HHHHcCCce---EeCCCCCCchHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----------EKCE----KAKAFGVTE---FLNPNDNNEPVQQ 247 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~----------~~~~----~~~~lg~~~---vi~~~~~~~~~~~ 247 (371)
.+.++||+|+ +++|.+.++.+...|+ +|+++.++. ++.+ .+++.|... ..|..+ ..+...
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLV-PEQVRA 84 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCC-HHHHHH
Confidence 4789999986 8999999999988999 899888763 2322 223344321 234431 333444
Q ss_pred HHHHHhC--CCccEEEEcC-C
Q 017460 248 VIKRITD--GGADYSFECI-G 265 (371)
Q Consensus 248 ~v~~~~~--gg~dvVid~~-g 265 (371)
.+.+... +.+|++|.+. |
T Consensus 85 ~~~~~~~~~g~iDilVnnA~g 105 (305)
T PRK08303 85 LVERIDREQGRLDILVNDIWG 105 (305)
T ss_pred HHHHHHHHcCCccEEEECCcc
Confidence 4433332 3789999987 5
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.16 Score=46.10 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
++.++||+|+|+.+.+++..+...|+++++++.|+++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 5679999999999998777777789989999999853
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.77 Score=42.80 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC-c----eEe-CCCC--CCchHHHHHHHHhCC
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-T----EFL-NPND--NNEPVQQVIKRITDG 255 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~----~vi-~~~~--~~~~~~~~v~~~~~g 255 (371)
.....+|||+|+| .|.++..++++.+..+|++++.+++-.+.++++.. . ..+ +.+- ...+..+.+.. ..+
T Consensus 148 h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~ 225 (374)
T PRK01581 148 VIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSS 225 (374)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cCC
Confidence 3445799999966 45567777777666699999999999999886311 0 000 0000 01223333332 233
Q ss_pred CccEEEEcCCC-----------hHHHHHHHHHhccCCceEEEec
Q 017460 256 GADYSFECIGD-----------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 256 g~dvVid~~g~-----------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.||+||--... .+.++.+.+.|+++ |.++.-.
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs 268 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQS 268 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEec
Confidence 79998654322 12467788899998 9987764
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.14 Score=47.72 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=61.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHhCCCc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
+++++||-+|+|. |..+..+++..|+ +|++++.++...+.+++ .|.. .++..+ ..++ .+..+.|
T Consensus 117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D--~~~~-----~~~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVAD--ALNQ-----PFEDGQF 187 (340)
T ss_pred CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC--cccC-----CCCCCCc
Confidence 6789999998864 5567788887788 99999999987776644 2331 111110 0000 1122379
Q ss_pred cEEEEcCCC------hHHHHHHHHHhccCCceEEEec
Q 017460 258 DYSFECIGD------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 258 dvVid~~g~------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
|+|+-.... ...+.++.+.|+++ |+++...
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~ 223 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVT 223 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEE
Confidence 999864331 23577888999998 9988764
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.13 Score=44.09 Aligned_cols=103 Identities=19% Similarity=0.312 Sum_probs=65.6
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHhC
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~~~~~~~v~~~~~ 254 (371)
..+..+..+||-+|.+ +|..++.+|+.+ +. +|+.++.++++.+.++ +.|...-+... ..+..+.+.++..
T Consensus 40 l~~~~~~k~vLEIGt~-~GySal~la~~l~~~g-~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~--~gda~~~l~~l~~ 115 (205)
T PF01596_consen 40 LVRLTRPKRVLEIGTF-TGYSALWLAEALPEDG-KITTIEIDPERAEIARENFRKAGLDDRIEVI--EGDALEVLPELAN 115 (205)
T ss_dssp HHHHHT-SEEEEESTT-TSHHHHHHHHTSTTTS-EEEEEESSHHHHHHHHHHHHHTTGGGGEEEE--ES-HHHHHHHHHH
T ss_pred HHHhcCCceEEEeccc-cccHHHHHHHhhcccc-eEEEecCcHHHHHHHHHHHHhcCCCCcEEEE--EeccHhhHHHHHh
Confidence 3445567899999864 478888888877 34 9999999999888774 45543222111 2234455555432
Q ss_pred ----CCccEEE-EcCCCh--HHHHHHHHHhccCCceEEEec
Q 017460 255 ----GGADYSF-ECIGDT--GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 255 ----gg~dvVi-d~~g~~--~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.||.|| |+--.. ..++.++++++++ |.++.=.
T Consensus 116 ~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~DN 155 (205)
T PF01596_consen 116 DGEEGQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIADN 155 (205)
T ss_dssp TTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEET
T ss_pred ccCCCceeEEEEcccccchhhHHHHHhhhccCC-eEEEEcc
Confidence 2699985 554321 2477888999996 7766543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.29 Score=43.44 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=50.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HH----cCC--ceE--eCCCCCCchHHHHHHHHhC--
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA----FGV--TEF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~----lg~--~~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++++||+|+ |.+|...+..+...|+ +|+.++++..+.+.+ .+ .+. ... .|..+ .......+.+...
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS-EQSVLALSRGVDEIF 79 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 468999986 8999999988888899 899998887655443 11 221 112 24431 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|+++.+.|.
T Consensus 80 ~~id~vv~~ag~ 91 (259)
T PRK12384 80 GRVDLLVYNAGI 91 (259)
T ss_pred CCCCEEEECCCc
Confidence 378999998873
|
|
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.33 Score=38.65 Aligned_cols=34 Identities=41% Similarity=0.593 Sum_probs=27.9
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhH
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC 224 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~ 224 (371)
++|.|+|.++++.+++++.+|+ +|++++..+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~-~v~v~d~r~e~~ 34 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGF-RVTVVDPRPERF 34 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTE-EEEEEES-CCC-
T ss_pred CEEEeCcHHHHHHHHHHHhCCC-EEEEEcCCcccc
Confidence 4678999999999999999999 999998887643
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.7 Score=41.62 Aligned_cols=88 Identities=20% Similarity=0.311 Sum_probs=62.0
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhh-HHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK-CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
+|.++|-|.+|.-.++-+...|+ .|.+.++++++ .+.+++.|+...-+ ..+.+. ..|+||-++++.
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~Ga~~a~s-------~~eaa~-----~aDvVitmv~~~ 68 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAAGATVAAS-------PAEAAA-----EADVVITMLPDD 68 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHcCCcccCC-------HHHHHH-----hCCEEEEecCCH
Confidence 57788999999999999999999 99999999999 88888888753221 122221 478888888776
Q ss_pred HHHHHHH-------HHhccCCceEEEecCC
Q 017460 268 GMITTAL-------QSCCDGWGLAVTLGVP 290 (371)
Q Consensus 268 ~~l~~~~-------~~l~~~~G~~v~~g~~ 290 (371)
..++..+ +.++++ ..+|.++..
T Consensus 69 ~~V~~V~~g~~g~~~~~~~G-~i~IDmSTi 97 (286)
T COG2084 69 AAVRAVLFGENGLLEGLKPG-AIVIDMSTI 97 (286)
T ss_pred HHHHHHHhCccchhhcCCCC-CEEEECCCC
Confidence 5554444 223454 566666543
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.21 Score=43.67 Aligned_cols=69 Identities=17% Similarity=0.312 Sum_probs=50.7
Q ss_pred EEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh--hHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 190 VVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--KCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 190 VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
|+|+|+ |.+|...++.+...+. +|.++.|+.. ..+.+++.|+..+. |+. -.+.+.+... |+|.||-+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~-----~~~~l~~al~-g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVVEADYD-----DPESLVAALK-GVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEEES-TT------HHHHHHHHT-TCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEeecccC-----CHHHHHHHHc-CCceEEeecC
Confidence 689997 9999999999988888 8999989864 35567888986442 332 2334444433 7999999888
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.71 Score=42.25 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=60.4
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
+..+-....+|.|+|.|.+|...+..++..|. +|+++++++. .+.++++|+.. . . +..+.+ ....|+
T Consensus 29 ~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~~-~--~----~~~e~~----~~~aDv 95 (304)
T PLN02256 29 EELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVSF-F--R----DPDDFC----EEHPDV 95 (304)
T ss_pred HhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCee-e--C----CHHHHh----hCCCCE
Confidence 44444566789999999999988888888887 8999988864 45566677632 1 1 111111 125788
Q ss_pred EEEcCCChHHHHHHHHH-----hccCCceEEEecC
Q 017460 260 SFECIGDTGMITTALQS-----CCDGWGLAVTLGV 289 (371)
Q Consensus 260 Vid~~g~~~~l~~~~~~-----l~~~~G~~v~~g~ 289 (371)
||-|+... .+...++. +.++ ..++.+++
T Consensus 96 Vilavp~~-~~~~vl~~l~~~~l~~~-~iviDv~S 128 (304)
T PLN02256 96 VLLCTSIL-STEAVLRSLPLQRLKRS-TLFVDVLS 128 (304)
T ss_pred EEEecCHH-HHHHHHHhhhhhccCCC-CEEEecCC
Confidence 88888753 33333333 3444 55666665
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.32 Score=40.54 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=28.8
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+|+|+|+|++|...++.+...|..++..++.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999988889998898888765
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.52 Score=38.53 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=55.6
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce------EeCCCC-CCchHHHHHHHHhCCCccEEE
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE------FLNPND-NNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~------vi~~~~-~~~~~~~~v~~~~~gg~dvVi 261 (371)
+|.|+|+|..|.+.+..+...|. +|....++++..+.+++-+... .+..+- -..++.+.+ .+.|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-----~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-----EDADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-----TT-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-----CcccEEE
Confidence 58899999999999999999997 9999999998888776533210 000000 011233333 2689999
Q ss_pred EcCCChHHHHHHHHHhcc
Q 017460 262 ECIGDTGMITTALQSCCD 279 (371)
Q Consensus 262 d~~g~~~~l~~~~~~l~~ 279 (371)
-++.+. .++..++.+++
T Consensus 75 iavPs~-~~~~~~~~l~~ 91 (157)
T PF01210_consen 75 IAVPSQ-AHREVLEQLAP 91 (157)
T ss_dssp E-S-GG-GHHHHHHHHTT
T ss_pred ecccHH-HHHHHHHHHhh
Confidence 999874 56777777666
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.56 Score=42.62 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=56.1
Q ss_pred CEEEEEccChHHHH-HHHHHHHcCCCEEEE-EcCChh--hHHHHHHcCCceEeCCCCCCchHHHHHHHHhC-CCccEEEE
Q 017460 188 STVVIFGLGTVGLS-VAQGAKARGASRIIG-VDTNPE--KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD-GGADYSFE 262 (371)
Q Consensus 188 ~~VlI~Gag~~G~~-ai~la~~~G~~~vi~-~~~~~~--~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~-gg~dvVid 262 (371)
-+|.|+|.|.+|.. +..+.+.-+. ++.+ ++.+++ .++.++++|..... .++...+.. .. .++|+||+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~------~~ie~LL~~-~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA------EGIDGLLAM-PEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc------CCHHHHHhC-cCCCCCCEEEE
Confidence 56899999999987 4455554466 5554 445554 34567888864322 123333321 11 26999999
Q ss_pred cCCChHHHHHHHHHhccCCceEEEe
Q 017460 263 CIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 263 ~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
+++...+.+.+.+++..| -.++..
T Consensus 77 AT~a~~H~e~a~~a~eaG-k~VID~ 100 (302)
T PRK08300 77 ATSAGAHVRHAAKLREAG-IRAIDL 100 (302)
T ss_pred CCCHHHHHHHHHHHHHcC-CeEEEC
Confidence 999876666766666664 444444
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.41 Score=43.35 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=50.1
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh---------hhHHHH----HHcCCce-E--eCCCCCCchHHH
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP---------EKCEKA----KAFGVTE-F--LNPNDNNEPVQQ 247 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~---------~~~~~~----~~lg~~~-v--i~~~~~~~~~~~ 247 (371)
-++.++||+|+ +++|.+.+..+...|+ +|++++++. ++.+.+ ++.+... . .|..+ .++..+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~ 81 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD-WDGAAN 81 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC-HHHHHH
Confidence 45789999986 8999998888888999 888876654 333222 2234321 2 24431 233344
Q ss_pred HHHHHhC--CCccEEEEcCCC
Q 017460 248 VIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 248 ~v~~~~~--gg~dvVid~~g~ 266 (371)
.+..... +.+|++|.+.|.
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 4444322 479999998874
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.76 Score=41.29 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=59.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeCCCC---CCchHHHHHHHHhCCCccE
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNPND---NNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~~~~---~~~~~~~~v~~~~~gg~dv 259 (371)
+.+++||++|+|. |..+..+++.....++.+++.+++-.+.++++-.. ..++... ...+..+.++. ..+.+|+
T Consensus 71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-CCCCccE
Confidence 4456999998765 44556667766566899999998877777653110 0010000 01122222322 2348999
Q ss_pred EEEcCC----------ChHHHHHHHHHhccCCceEEEec
Q 017460 260 SFECIG----------DTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 260 Vid~~g----------~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
||--.. ..+.++.+.+.|+++ |.++...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQS 186 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcC
Confidence 864222 123457788899998 9988763
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.2 Score=43.19 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=61.2
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCce--EeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE--FLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~--vi~~~~~~~~~~~~v~~~~ 253 (371)
...+++++++||-+|+|. |..+..+++.. . +|++++.+++..+.++ +++... ++.. +..+ .+.
T Consensus 72 ~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~---~~~ 140 (212)
T PRK00312 72 ELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG-----DGWK---GWP 140 (212)
T ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC-----Cccc---CCC
Confidence 566788999999998764 44455555553 3 8999999988766653 344432 2211 1101 111
Q ss_pred C-CCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 254 D-GGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~-gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
. +.||+|+-........+...+.|+++ |+++..
T Consensus 141 ~~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~ 174 (212)
T PRK00312 141 AYAPFDRILVTAAAPEIPRALLEQLKEG-GILVAP 174 (212)
T ss_pred cCCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEE
Confidence 1 37999886555445567788899997 998764
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.6 Score=43.25 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=63.2
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE------eC--CCCCCchHHHHHHHHhCCCcc
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF------LN--PNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v------i~--~~~~~~~~~~~v~~~~~gg~d 258 (371)
..+|.|+|+|.+|.+.+..+...|. .|.+.++++++.+.+++.+.... +. ... ..+..+.+ ..+|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~-~~~~~e~~-----~~aD 76 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYP-TADPEEAL-----AGAD 76 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE-eCCHHHHH-----cCCC
Confidence 3479999999999999888888898 89999999888777765421100 00 000 11222211 2689
Q ss_pred EEEEcCCChHHHHHHHHHhccCCceEEEecC
Q 017460 259 YSFECIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 259 vVid~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+||-++... .++..++.++++ -.++.+..
T Consensus 77 ~Vi~~v~~~-~~~~v~~~l~~~-~~vi~~~~ 105 (328)
T PRK14618 77 FAVVAVPSK-ALRETLAGLPRA-LGYVSCAK 105 (328)
T ss_pred EEEEECchH-HHHHHHHhcCcC-CEEEEEee
Confidence 999999886 567777888875 56665543
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.15 Score=47.58 Aligned_cols=74 Identities=15% Similarity=0.281 Sum_probs=48.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC----Cce-EeCCCCCCchHHHHHHHHhCC-Cc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG----VTE-FLNPNDNNEPVQQVIKRITDG-GA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg----~~~-vi~~~~~~~~~~~~v~~~~~g-g~ 257 (371)
+|.+|||+|+ |.+|...+..+...|. +|+++++++...... +.++ ... ..|.. + .+.+.++..+ ++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~--~---~~~~~~~~~~~~~ 76 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIR--D---AAKLRKAIAEFKP 76 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCC--C---HHHHHHHHhhcCC
Confidence 4688999985 9999999999988998 899988776543222 2222 111 12333 1 2234444444 78
Q ss_pred cEEEEcCC
Q 017460 258 DYSFECIG 265 (371)
Q Consensus 258 dvVid~~g 265 (371)
|+||.+.+
T Consensus 77 d~vih~A~ 84 (349)
T TIGR02622 77 EIVFHLAA 84 (349)
T ss_pred CEEEECCc
Confidence 99999887
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.77 Score=41.67 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=33.2
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHH
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~ 226 (371)
.+|.|+|+|.+|.-.++.+...|. .|+..+++++.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHH
Confidence 378999999999888888777899 99999999998766
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.52 Score=41.92 Aligned_cols=93 Identities=23% Similarity=0.264 Sum_probs=60.4
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHhCCCc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
.++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++ .|.. .++.. +..+ +.....+.|
T Consensus 43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~-----d~~~-l~~~~~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC-----AAQD-IAQHLETPV 113 (255)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEc-----CHHH-HhhhcCCCC
Confidence 4567889888764 6677777764 77 99999999998887754 3321 12221 1211 222233479
Q ss_pred cEEEEcCC-----C-hHHHHHHHHHhccCCceEEEe
Q 017460 258 DYSFECIG-----D-TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 258 dvVid~~g-----~-~~~l~~~~~~l~~~~G~~v~~ 287 (371)
|+|+-... . ...+..+.+.|+++ |.++.+
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEE
Confidence 99985321 2 23578889999998 998765
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.81 Score=41.79 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=37.4
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~ 233 (371)
+|.|+|.|.+|...+.-+...|. +|++.++++++.+.+++.|+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~~ 45 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRTT 45 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc
Confidence 58899999999988777777898 999999999999888877653
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.71 Score=42.25 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=58.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|-|.+|.+.++.++..|. +|++..+.....+.++..|.. +. +..+.++ ..|+|+-+..
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~~-v~-------sl~Eaak-----~ADVV~llLP 80 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGFE-VM-------SVSEAVR-----TAQVVQMLLP 80 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCCE-EC-------CHHHHHh-----cCCEEEEeCC
Confidence 58899999999999999999999999 898886665555666666763 21 2222222 5799998887
Q ss_pred ChHH---H-HHHHHHhccCCceEEEe
Q 017460 266 DTGM---I-TTALQSCCDGWGLAVTL 287 (371)
Q Consensus 266 ~~~~---l-~~~~~~l~~~~G~~v~~ 287 (371)
.+.. + ...+..+++ |.++.+
T Consensus 81 d~~t~~V~~~eil~~MK~--GaiL~f 104 (335)
T PRK13403 81 DEQQAHVYKAEVEENLRE--GQMLLF 104 (335)
T ss_pred ChHHHHHHHHHHHhcCCC--CCEEEE
Confidence 6432 2 234555666 444444
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.35 Score=40.63 Aligned_cols=72 Identities=24% Similarity=0.329 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
-+++|.+||=+|+|. |.+...|....++ ..+.++.++++...+.+.|.. |+. .+..+.+..+.++.||+||=
T Consensus 10 ~I~pgsrVLDLGCGd-G~LL~~L~~~k~v-~g~GvEid~~~v~~cv~rGv~-Viq-----~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGD-GELLAYLKDEKQV-DGYGVEIDPDNVAACVARGVS-VIQ-----GDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HcCCCCEEEecCCCc-hHHHHHHHHhcCC-eEEEEecCHHHHHHHHHcCCC-EEE-----CCHHHhHhhCCCCCccEEeh
Confidence 378899999999874 6666677777898 999999999999999999986 553 34556677776669999984
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.89 Score=41.81 Aligned_cols=48 Identities=29% Similarity=0.358 Sum_probs=38.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~ 233 (371)
..|++|.|+|.|.+|...++-++..|. .+....+...+.+...+.++.
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg~-~i~y~~r~~~~~~~~~~~~~~ 207 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFGC-VILYHSRTQLPPEEAYEYYAE 207 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhccc-eeeeecccCCchhhHHHhccc
Confidence 457899999999999999999999995 777777777666666555553
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.51 Score=38.65 Aligned_cols=95 Identities=19% Similarity=0.304 Sum_probs=54.8
Q ss_pred hhcchhhhhHHhHhhhhcC-CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 017460 165 CLLSCGLSAGLGAAWNVAD-ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 165 a~~~~~~~~a~~~l~~~~~-~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
..+||.....+..+ +..+ --.|++|+|+|. ..+|.-.+.+++..|+ .|.......+.
T Consensus 14 ~~~PcTp~aii~lL-~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a-tVt~~h~~T~~------------------- 72 (160)
T PF02882_consen 14 GFVPCTPLAIIELL-EYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGA-TVTICHSKTKN------------------- 72 (160)
T ss_dssp SS--HHHHHHHHHH-HHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-TTSSS-------------------
T ss_pred CCcCCCHHHHHHHH-HhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCC-eEEeccCCCCc-------------------
Confidence 44454444444433 4444 356899999995 6899999999999999 88887554322
Q ss_pred chHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
..+.++ .+|+|+.++|.+..+. -+.++++ ..++.+|..
T Consensus 73 --l~~~~~-----~ADIVVsa~G~~~~i~--~~~ik~g-avVIDvG~~ 110 (160)
T PF02882_consen 73 --LQEITR-----RADIVVSAVGKPNLIK--ADWIKPG-AVVIDVGIN 110 (160)
T ss_dssp --HHHHHT-----TSSEEEE-SSSTT-B---GGGS-TT-EEEEE--CE
T ss_pred --ccceee-----eccEEeeeeccccccc--cccccCC-cEEEecCCc
Confidence 222221 4799999999876544 2457886 788888754
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.18 Score=44.77 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=52.0
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~ 266 (371)
+|||+|+.+-|...+..+...|. +|++..+++.+.+.+.+.|...+.... .+- +.+.++... ++|+|||++-.
T Consensus 2 ~ILvlGGT~egr~la~~L~~~g~-~v~~s~~t~~~~~~~~~~g~~~v~~g~---l~~-~~l~~~l~~~~i~~VIDAtHP 75 (256)
T TIGR00715 2 TVLLMGGTVDSRAIAKGLIAQGI-EILVTVTTSEGKHLYPIHQALTVHTGA---LDP-QELREFLKRHSIDILVDATHP 75 (256)
T ss_pred eEEEEechHHHHHHHHHHHhCCC-eEEEEEccCCccccccccCCceEEECC---CCH-HHHHHHHHhcCCCEEEEcCCH
Confidence 68999875559888887778898 999999999888888777655444222 122 224444444 89999998853
|
This enzyme was found to be a monomer by gel filtration. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.64 Score=41.11 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=65.6
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHhC-
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~~~~~~~v~~~~~- 254 (371)
..+..+..+||-+|.+ +|..++.+|+.++. .+++.++.+++..+.++ +.|...-+... ..+..+.+.++..
T Consensus 74 l~~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~--~G~a~e~L~~l~~~ 150 (247)
T PLN02589 74 LLKLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFR--EGPALPVLDQMIED 150 (247)
T ss_pred HHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE--eccHHHHHHHHHhc
Confidence 4455667789988863 57777788877631 28999999998877764 45643322222 2345555655532
Q ss_pred ----CCccEEEEcCCCh---HHHHHHHHHhccCCceEEE
Q 017460 255 ----GGADYSFECIGDT---GMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 255 ----gg~dvVid~~g~~---~~l~~~~~~l~~~~G~~v~ 286 (371)
+.||.||-=.... ..++.+++++++| |.++.
T Consensus 151 ~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~ 188 (247)
T PLN02589 151 GKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGY 188 (247)
T ss_pred cccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEE
Confidence 4799986433322 2477888999996 77654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.24 Score=44.37 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=65.8
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc----eEeCCCCCCchHHHHHHHHhC
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT----EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~----~vi~~~~~~~~~~~~v~~~~~ 254 (371)
....++.++.+||=+|+|. |..+..+++..++ +|++++.+++..+.+++.... .+... ++.+ ..+..
T Consensus 45 l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~~-----D~~~--~~~~~ 115 (263)
T PTZ00098 45 LSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEAN-----DILK--KDFPE 115 (263)
T ss_pred HHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEEC-----Cccc--CCCCC
Confidence 3566788999999998764 5556677777788 999999999888888664221 11111 1100 01112
Q ss_pred CCccEEEEc--C---C---ChHHHHHHHHHhccCCceEEEecC
Q 017460 255 GGADYSFEC--I---G---DTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 255 gg~dvVid~--~---g---~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+.||+|+.. . + -...++.+.+.|+++ |+++....
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~ 157 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDY 157 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 379999862 1 1 123577888999998 99987654
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.65 Score=41.80 Aligned_cols=95 Identities=23% Similarity=0.343 Sum_probs=63.9
Q ss_pred hcchhhhhHHhHhhhhcCC-CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVADI-SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~-~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||.....+..+ +..++ -.|.+|+|+|. ..+|.-.+.++...|+ .|+.+.+...
T Consensus 137 ~~PcTp~av~~lL-~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~a-tVt~chs~t~--------------------- 193 (284)
T PRK14190 137 FLPCTPHGILELL-KEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENA-TVTYCHSKTK--------------------- 193 (284)
T ss_pred CCCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEeCCch---------------------
Confidence 4555544444433 44444 46999999995 7899999999999998 8887743221
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
++.+.++ .+|+|+-++|.+..+. -+.++++ ..++.+|...
T Consensus 194 ~l~~~~~-----~ADIvI~AvG~p~~i~--~~~ik~g-avVIDvGi~~ 233 (284)
T PRK14190 194 NLAELTK-----QADILIVAVGKPKLIT--ADMVKEG-AVVIDVGVNR 233 (284)
T ss_pred hHHHHHH-----hCCEEEEecCCCCcCC--HHHcCCC-CEEEEeeccc
Confidence 2222222 4799999999876443 3557886 8888888654
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.55 Score=41.18 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=48.1
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HH---c-CCc-eE--eCCCCCCchHHHHHHHHhCCCcc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA---F-GVT-EF--LNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~---l-g~~-~v--i~~~~~~~~~~~~v~~~~~gg~d 258 (371)
.+++|+|+ |++|...+..+...|+ +|+++++++++.+.+ .+ . +.. .+ .|..+ ..+..+.+.+. ...+|
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~-~~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILD-TASHAAFLDSL-PALPD 78 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC-hHHHHHHHHHH-hhcCC
Confidence 47899986 9999999998888899 899999988776543 21 1 111 12 24431 22233333322 12579
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++.+.|.
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99987763
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.58 Score=39.99 Aligned_cols=34 Identities=38% Similarity=0.525 Sum_probs=30.4
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
..+|+|.|+|++|...++.+...|..+++.++.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5789999999999999998888999789998877
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.32 Score=45.62 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.+|||+|+|++|..++..+...|.+++..++.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 57899999999999999999999998999887654
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.64 Score=36.32 Aligned_cols=95 Identities=20% Similarity=0.346 Sum_probs=50.4
Q ss_pred EEEEEcc-ChHHHHHHHHHHH-cCCCEEEEEcCChh---hHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 189 TVVIFGL-GTVGLSVAQGAKA-RGASRIIGVDTNPE---KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~-~G~~~vi~~~~~~~---~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+|+|+|+ |-+|...++.+.. -+.+-+-+++++++ ..+.-.-.|... . .....+.+.++.. .+|++||+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~-~-----~~~v~~~l~~~~~-~~DVvIDf 74 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGP-L-----GVPVTDDLEELLE-EADVVIDF 74 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-------SSBEBS-HHHHTT-H-SEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCC-c-----ccccchhHHHhcc-cCCEEEEc
Confidence 6889998 9999999999987 57734445555541 111111122110 0 0001112233333 28999999
Q ss_pred CCChHHHHHHHHHhccCCceEEEecCCCC
Q 017460 264 IGDTGMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 264 ~g~~~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+. +..+...++.+... |.-+.+|.++-
T Consensus 75 T~-p~~~~~~~~~~~~~-g~~~ViGTTG~ 101 (124)
T PF01113_consen 75 TN-PDAVYDNLEYALKH-GVPLVIGTTGF 101 (124)
T ss_dssp S--HHHHHHHHHHHHHH-T-EEEEE-SSS
T ss_pred CC-hHHhHHHHHHHHhC-CCCEEEECCCC
Confidence 84 45555556655554 77777776543
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.48 Score=41.39 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=48.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-HHH----HHHcCCc-eEe--CCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CEK----AKAFGVT-EFL--NPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-~~~----~~~lg~~-~vi--~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |.+|...+..+...|+ +|+++.+++.+ .+. ++..+.. .++ |..+ ...+.+.+.+...
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD-AESVERAVDEAKAEF 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 3578999986 9999999999988999 78776665542 221 2223322 122 4441 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|.||.+.|.
T Consensus 82 ~~id~vi~~ag~ 93 (248)
T PRK05557 82 GGVDILVNNAGI 93 (248)
T ss_pred CCCCEEEECCCc
Confidence 268999998864
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.33 Score=43.23 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=61.8
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCCh------hhHHHHHHcCC-ce--EeCCCCCCchHHHHHHHHh
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNP------EKCEKAKAFGV-TE--FLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~------~~~~~~~~lg~-~~--vi~~~~~~~~~~~~v~~~~ 253 (371)
.++++||+|+ +++|.+.+..+...|+ +|+.+.++. +..+.+++.+. .. ..|..+ .+...+.+.+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~ 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQD-DAQIEETFETIK 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCC-HHHHHHHHHHHH
Confidence 4688999985 4899999888888999 887764432 22233332221 11 234442 333444444433
Q ss_pred C--CCccEEEEcCCCh-------H----------------------HHHHHHHHhccCCceEEEecCCCC
Q 017460 254 D--GGADYSFECIGDT-------G----------------------MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 254 ~--gg~dvVid~~g~~-------~----------------------~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
. +.+|+++.+.|.. . ..+..+..+..+ |+++.+++...
T Consensus 83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~-g~Iv~isS~~~ 151 (258)
T PRK07370 83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG-GSIVTLTYLGG 151 (258)
T ss_pred HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC-CeEEEEecccc
Confidence 2 3799999988731 0 123455566666 99988876543
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.72 Score=42.02 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=50.2
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.. . .++.+.+ ...|+||.++....
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~~~-~------~~~~e~~-----~~~d~vi~~vp~~~ 70 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGAET-A------STAKAVA-----EQCDVIITMLPNSP 70 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c------CCHHHHH-----hcCCEEEEeCCCHH
Confidence 68899999999987777777898 8999999999888887777531 1 1122222 14788888887544
Q ss_pred HHHH
Q 017460 269 MITT 272 (371)
Q Consensus 269 ~l~~ 272 (371)
.++.
T Consensus 71 ~~~~ 74 (296)
T PRK11559 71 HVKE 74 (296)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.27 Score=43.16 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=47.7
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc-CChhhH-HHH---HHcCCceE---eCCCCCCchHHHHHHHHhC--C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKC-EKA---KAFGVTEF---LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~-~~~~~~-~~~---~~lg~~~v---i~~~~~~~~~~~~v~~~~~--g 255 (371)
+.++||+|+ |++|...++.+...|+ +|++.. +++.+. +.+ ++.+.... .|..+ ..+..+.+.+... +
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 80 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGD-WDSTKAAFDKVKAEVG 80 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence 578899985 9999999999998999 777643 333332 222 33454322 34431 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 81 ~id~li~~ag~ 91 (246)
T PRK12938 81 EIDVLVNNAGI 91 (246)
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.94 E-value=1 Score=38.57 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=62.3
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc--eEeCCCCCCchHHHHHHHHh-CCCcc
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT--EFLNPNDNNEPVQQVIKRIT-DGGAD 258 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~--~vi~~~~~~~~~~~~v~~~~-~gg~d 258 (371)
++.+||-+|+|. |..+..+++.....+|++++.+++..+.+++ .+.. .++.. +..+.+.... .+.+|
T Consensus 40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~-----d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCG-----DAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEec-----CHHHHHHHHcCccccc
Confidence 567889899875 6667777776543489999999998887743 3332 22322 2222333223 33789
Q ss_pred EEEEcCCC--------------hHHHHHHHHHhccCCceEEEec
Q 017460 259 YSFECIGD--------------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 259 vVid~~g~--------------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.|+-.... ...++.+.+.|+++ |.++...
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~ 156 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFAT 156 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEc
Confidence 98754321 24578889999997 9988763
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.3 Score=36.11 Aligned_cols=87 Identities=24% Similarity=0.284 Sum_probs=55.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh-hHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE-KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
++++|.|+|-|+-|.+-++-++-.|. +|++..+... ..+.+++-|.. ..+..+.++ ..|+|+-.+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vglr~~s~s~~~A~~~Gf~--------v~~~~eAv~-----~aDvV~~L~ 68 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV-NVIVGLREGSASWEKAKADGFE--------VMSVAEAVK-----KADVVMLLL 68 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHHHHHTT-E--------CCEHHHHHH-----C-SEEEE-S
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC-CEEEEecCCCcCHHHHHHCCCe--------eccHHHHHh-----hCCEEEEeC
Confidence 47899999999999999999999999 8877767665 78888888875 224555554 479999988
Q ss_pred CChH---HH-HHHHHHhccCCceEEEec
Q 017460 265 GDTG---MI-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 265 g~~~---~l-~~~~~~l~~~~G~~v~~g 288 (371)
.+.. .+ +.....|++ |..+.+.
T Consensus 69 PD~~q~~vy~~~I~p~l~~--G~~L~fa 94 (165)
T PF07991_consen 69 PDEVQPEVYEEEIAPNLKP--GATLVFA 94 (165)
T ss_dssp -HHHHHHHHHHHHHHHS-T--T-EEEES
T ss_pred ChHHHHHHHHHHHHhhCCC--CCEEEeC
Confidence 7642 12 222335666 4555553
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.17 Score=42.58 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=55.9
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce--EeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~--vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
+++||-+|+|+ |..++.+++.....+|++++.+++..+.+ ++.+.+. ++.. +..+ + ...+.+|+|
T Consensus 43 ~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~-----d~~~-~--~~~~~fD~I 113 (181)
T TIGR00138 43 GKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG-----RAED-F--QHEEQFDVI 113 (181)
T ss_pred CCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec-----chhh-c--cccCCccEE
Confidence 78999898753 45555556554334899999999866555 3455432 2222 1211 1 112389998
Q ss_pred EEcCC--ChHHHHHHHHHhccCCceEEEe
Q 017460 261 FECIG--DTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 261 id~~g--~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
+-..- -...++.+.+.|+++ |+++..
T Consensus 114 ~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~ 141 (181)
T TIGR00138 114 TSRALASLNVLLELTLNLLKVG-GYFLAY 141 (181)
T ss_pred EehhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence 76431 123456778889997 998866
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.5 Score=42.39 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=50.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
+..++||+|+ |.+|...+..+...|+ +|+++.++.++.+.+ +..+... . .|..+ ...+...+.+... +
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD-PDSVKSFVAQAEEALG 86 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence 3468999986 9999999988888899 898888877655433 2334322 2 24431 2233333333221 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 87 ~id~vi~~Ag~ 97 (274)
T PRK07775 87 EIEVLVSGAGD 97 (274)
T ss_pred CCCEEEECCCc
Confidence 78999998874
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.4 Score=45.15 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=30.8
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
+.+|+|+|+|++|..++..+...|..+++.++.+
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5689999999999999999999999899988765
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.28 Score=43.52 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=48.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
+|.++||.|+ |++|...++.+...|+ +|+++.++.++.. .-... ...|..+ .+...+.+.+... +++|++|
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~---~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~vi 82 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDDL---PEGVEFVAADLTT-AEGCAAVARAVLERLGGVDILV 82 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhhc---CCceeEEecCCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4789999986 8999999998888899 8999988765421 11111 1234431 2233333333322 3789999
Q ss_pred EcCC
Q 017460 262 ECIG 265 (371)
Q Consensus 262 d~~g 265 (371)
.+.|
T Consensus 83 ~~ag 86 (260)
T PRK06523 83 HVLG 86 (260)
T ss_pred ECCc
Confidence 9887
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.26 Score=48.77 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=48.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.+.++||+|+|++|.+++..+...|+ +|+++.++.++.+.+ .+++.. .+... ++ ........|++++++
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la~~l~~~-~~~~~----~~----~~~~~~~~diiINtT 447 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELADAVGGQ-ALTLA----DL----ENFHPEEGMILANTT 447 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCc-eeeHh----Hh----hhhccccCeEEEecc
Confidence 46789999999999999999999999 999999988877665 445432 22211 11 111112578899877
Q ss_pred CC
Q 017460 265 GD 266 (371)
Q Consensus 265 g~ 266 (371)
+-
T Consensus 448 ~v 449 (529)
T PLN02520 448 SV 449 (529)
T ss_pred cC
Confidence 53
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.49 Score=41.48 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=48.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh-hhHHHH----HHcC---Cc-eEeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCEKA----KAFG---VT-EFLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~-~~~~~~----~~lg---~~-~vi~~~~~~~~~~~~v~~~~~- 254 (371)
.+.++||+|+ |.+|...+..+...|+ +|+.++++. ++.+.+ .+.+ .. ...|..+ .+.+...+.+...
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD-PDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 4578999986 9999998888888899 899988753 333322 2221 11 1235441 2233333333221
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
+++|+||.+.|
T Consensus 83 ~~~~d~vi~~ag 94 (249)
T PRK09135 83 FGRLDALVNNAS 94 (249)
T ss_pred cCCCCEEEECCC
Confidence 36899999987
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.39 Score=44.28 Aligned_cols=98 Identities=17% Similarity=0.328 Sum_probs=59.7
Q ss_pred EEEEEccChHHHHHHHHHHHcC----CCEEEEEcC--ChhhHHHHHHcCCc--------------eEeCCCC---CCchH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARG----ASRIIGVDT--NPEKCEKAKAFGVT--------------EFLNPND---NNEPV 245 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G----~~~vi~~~~--~~~~~~~~~~lg~~--------------~vi~~~~---~~~~~ 245 (371)
+|.|+|.|.+|+..++.+...+ . .|.++.. +.+.+..+.++... ..++.+. ....-
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~-~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGI-EVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCe-EEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 4789999999999999987654 5 6666533 23333444333210 0111110 00000
Q ss_pred HHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 246 QQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 246 ~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
.+.+. .+. ++|+||+|+|.....+.+...+..| ++.|.++.+
T Consensus 80 p~~~~--w~~~gvDiVie~tG~~~s~e~a~~~l~aG-a~~V~~SaP 122 (325)
T TIGR01532 80 PEALP--WRALGVDLVLDCTGVYGNREQGERHIRAG-AKRVLFSHP 122 (325)
T ss_pred hhhcc--ccccCCCEEEEccchhccHHHHHHHHHcC-CeEEEecCC
Confidence 11111 133 8999999999877778888899986 888888765
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.3 Score=42.67 Aligned_cols=101 Identities=20% Similarity=0.289 Sum_probs=63.4
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~--vi~~~~~~~~~~~~v~~~ 252 (371)
....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++ .+.+. ++..+ ..+ + .+
T Consensus 39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~-~~ 110 (231)
T TIGR02752 39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN-----AME-L-PF 110 (231)
T ss_pred HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec-----hhc-C-CC
Confidence 455678899999998764 5566777777642 289999999988776643 23221 22111 100 0 11
Q ss_pred hCCCccEEEEcCC-----C-hHHHHHHHHHhccCCceEEEecC
Q 017460 253 TDGGADYSFECIG-----D-TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 253 ~~gg~dvVid~~g-----~-~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
..+.+|+|+-... . ...++.+.+.|+++ |+++.+..
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 152 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG-GKVVCLET 152 (231)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHHcCcC-eEEEEEEC
Confidence 2237999875322 1 23467788899998 99987643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.51 Score=41.61 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=49.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-eE--eCCCCCCchHHHHHHHHhC--CCc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-EF--LNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
.++||.|+ |.+|...++.+...|+ +|+.+.+++++.+.+ ++.+.. .. .|..+ .....+.+.+... +.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD-KDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCCC
Confidence 36899986 9999999998889999 899998887654433 333432 12 24431 2333333333322 268
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|++|.+.|.
T Consensus 79 d~vi~~ag~ 87 (254)
T TIGR02415 79 DVMVNNAGV 87 (254)
T ss_pred CEEEECCCc
Confidence 999998874
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.7 Score=41.60 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=64.0
Q ss_pred hcchhhhhHHhHhhhhcCCC-CCCEEEEEccC-hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVADIS-KGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~~-~~~~VlI~Gag-~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||.....+..+ +..++. .|.+|+|+|.| .+|.-.+.++...|+ .|.++.... .
T Consensus 136 ~~PcTp~avi~lL-~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t---------------------~ 192 (285)
T PRK14191 136 FVPATPMGVMRLL-KHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILT---------------------K 192 (285)
T ss_pred CCCCcHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCc---------------------H
Confidence 4555544444444 545543 69999999975 999999999999999 887773322 1
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
++.+.++ .+|+|+-++|.+..+. -+.++++ ..++.+|..
T Consensus 193 ~l~~~~~-----~ADIvV~AvG~p~~i~--~~~vk~G-avVIDvGi~ 231 (285)
T PRK14191 193 DLSFYTQ-----NADIVCVGVGKPDLIK--ASMVKKG-AVVVDIGIN 231 (285)
T ss_pred HHHHHHH-----hCCEEEEecCCCCcCC--HHHcCCC-cEEEEeecc
Confidence 2222222 4799999999876544 3456886 888888864
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.41 Score=42.78 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=49.0
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
++||+|+ |++|...+..+...|+ +|++++++.++.+.+ +..+... + .|..+ ...+.+.+..... +++|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD-YSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 6899986 9999998888888899 899998888765543 2333322 2 24431 2223333332222 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.9 Score=36.32 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=61.7
Q ss_pred hcchhhhhHHhHhhhhcCC-CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVADI-SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~-~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+++.....+..+ +..++ -.|.+|+|+|. ..+|.-.+.++...|+ .|+.+.++..
T Consensus 7 ~~p~t~~a~~~ll-~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t~--------------------- 63 (140)
T cd05212 7 FVSPVAKAVKELL-NKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKTI--------------------- 63 (140)
T ss_pred ccccHHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCCc---------------------
Confidence 3443333333333 44343 46899999995 7899999999999999 8888865432
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
++.+.++ .+|+|+-++|....+. -+.+++| -.++.+|...
T Consensus 64 ~l~~~v~-----~ADIVvsAtg~~~~i~--~~~ikpG-a~Vidvg~~~ 103 (140)
T cd05212 64 QLQSKVH-----DADVVVVGSPKPEKVP--TEWIKPG-ATVINCSPTK 103 (140)
T ss_pred CHHHHHh-----hCCEEEEecCCCCccC--HHHcCCC-CEEEEcCCCc
Confidence 1222222 4799999999875444 3458886 7777776543
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.2 Score=43.56 Aligned_cols=71 Identities=11% Similarity=0.215 Sum_probs=48.6
Q ss_pred EEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCce-EeCCCCCCchHHHHHHHHhCC-CccEEEEcCC
Q 017460 190 VVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTE-FLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265 (371)
Q Consensus 190 VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~-vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g 265 (371)
|||+|+ |.+|...+..+...|. .|+++.+++........ ..... ..|.. + .+.+.++..+ .+|.||.+.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~dl~--~---~~~~~~~~~~~~~d~vi~~a~ 74 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-EVIVLSRSSNSESFEEKKLNVEFVIGDLT--D---KEQLEKLLEKANIDVVIHLAA 74 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-EEEEEESCSTGGHHHHHHTTEEEEESETT--S---HHHHHHHHHHHTESEEEEEBS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-ccccccccccccccccccceEEEEEeecc--c---cccccccccccCceEEEEeec
Confidence 789986 9999999999999999 88888777766554432 33322 22443 2 2233344334 7899999987
Q ss_pred C
Q 017460 266 D 266 (371)
Q Consensus 266 ~ 266 (371)
.
T Consensus 75 ~ 75 (236)
T PF01370_consen 75 F 75 (236)
T ss_dssp S
T ss_pred c
Confidence 5
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.42 Score=43.59 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=52.9
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC-CCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND-NNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~-~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
+|+|+|+|.+|.+.+..+...|. .|+.+++++++.+.+++.|... -+... ............ ..+|+||-++...
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~--~~~d~vila~k~~ 77 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL-EDGEITVPVLAADDPAEL--GPQDLVILAVKAY 77 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc-cCCceeecccCCCChhHc--CCCCEEEEecccc
Confidence 58999999999988888877898 8999999888877776656421 00000 000000001111 3789999998764
Q ss_pred HHHHHHHHHhc
Q 017460 268 GMITTALQSCC 278 (371)
Q Consensus 268 ~~l~~~~~~l~ 278 (371)
.++.+++.++
T Consensus 78 -~~~~~~~~l~ 87 (304)
T PRK06522 78 -QLPAALPSLA 87 (304)
T ss_pred -cHHHHHHHHh
Confidence 3455555444
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.1 Score=41.38 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=58.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHH-HcCCCEEEEEcCChhhHHHH-HHc---CCceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAK-ARGASRIIGVDTNPEKCEKA-KAF---GVTEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~-~~G~~~vi~~~~~~~~~~~~-~~l---g~~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
....+|+|+|+|..|.+.+..+. ..+..+|.+..+++++.+.+ +++ |..... . .+..+.+ .++|+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~-~----~~~~~av-----~~aDI 192 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV-V----TDLEAAV-----RQADI 192 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE-e----CCHHHHH-----hcCCE
Confidence 45778999999999999876444 46766999999999887665 333 322111 1 1222222 26899
Q ss_pred EEEcCCChHH-HHHHHHHhccCCceEEEecCC
Q 017460 260 SFECIGDTGM-ITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 260 Vid~~g~~~~-l~~~~~~l~~~~G~~v~~g~~ 290 (371)
|+.++++... +. -+.++++ -.+..+|..
T Consensus 193 Vi~aT~s~~pvl~--~~~l~~g-~~i~~ig~~ 221 (314)
T PRK06141 193 ISCATLSTEPLVR--GEWLKPG-THLDLVGNF 221 (314)
T ss_pred EEEeeCCCCCEec--HHHcCCC-CEEEeeCCC
Confidence 9998887532 22 2457774 444455543
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.46 Score=42.37 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=49.3
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCC---hhhHHHH-HHcCCce--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTN---PEKCEKA-KAFGVTE--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~---~~~~~~~-~~lg~~~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ +++|.+.+..+...|+ +|+.+.+. .++.+.+ ++++... ..|..+ .+.....+.....
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVAS-DEQIDALFASLGQHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCC-HHHHHHHHHHHHHHh
Confidence 4788999983 5899998888888999 88877543 3333333 3445322 234442 3344444444433
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+.+|+++.+.|.
T Consensus 83 g~iD~lvnnAG~ 94 (260)
T PRK06997 83 DGLDGLVHSIGF 94 (260)
T ss_pred CCCcEEEEcccc
Confidence 479999998763
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.5 Score=37.78 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=66.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh-hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP-EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+|.+|||+|+|.+|.-=+.++...|+ +|+++.... .....+.+.+-...++ + .|... .. .++++||-++
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~~~el~~~~~~~~i~~~~-~----~~~~~---~~-~~~~lviaAt 80 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEFEPELKALIEEGKIKWIE-R----EFDAE---DL-DDAFLVIAAT 80 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCccHHHHHHHHhcCcchhh-c----ccChh---hh-cCceEEEEeC
Confidence 47799999999999999999999999 888886655 3333332222111221 1 11110 01 1489999999
Q ss_pred CChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEE
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTL 309 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i 309 (371)
++...-+...+...+. +.++..........+-++...-...+++
T Consensus 81 ~d~~ln~~i~~~a~~~-~i~vNv~D~p~~~~f~~Pa~~~r~~l~i 124 (210)
T COG1648 81 DDEELNERIAKAARER-RILVNVVDDPELCDFIFPAIVDRGPLQI 124 (210)
T ss_pred CCHHHHHHHHHHHHHh-CCceeccCCcccCceecceeeccCCeEE
Confidence 9865545555566664 8887776554433344433332224444
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.73 Score=43.82 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=59.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeC-CCCCCchHHHHHHHHhCC-CccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLN-PNDNNEPVQQVIKRITDG-GADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~-~~~~~~~~~~~v~~~~~g-g~dvV 260 (371)
...+|||+|+ .+.|+..+..++..|. +|++++.++....... ..++ ..+. .+.+.+.+.+.+.++... ++|+|
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s-~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v 80 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFS-RAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL 80 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHH-HhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 4578999997 5689999999999999 9999988765433211 1122 2232 222245678888887766 89999
Q ss_pred EEcCCChHHHHHHHHHhcc
Q 017460 261 FECIGDTGMITTALQSCCD 279 (371)
Q Consensus 261 id~~g~~~~l~~~~~~l~~ 279 (371)
|-+......+......+.+
T Consensus 81 IP~~e~~~~~a~~~~~l~~ 99 (389)
T PRK06849 81 IPTCEEVFYLSHAKEELSA 99 (389)
T ss_pred EECChHHHhHHhhhhhhcC
Confidence 9877532222233344544
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.47 Score=41.12 Aligned_cols=78 Identities=23% Similarity=0.238 Sum_probs=48.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh----------hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP----------EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~----------~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~ 254 (371)
-.|.+|+|.|.|.+|..+++++...|++.|.+.+.+. +..+..++.+....+... +..-.+++ ..
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~--~~~~~~~l---~~ 95 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQ--DYFPGEAI---LG 95 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcc--cccCcccc---ee
Confidence 3588999999999999999999999984555566665 555555554432111110 00000111 11
Q ss_pred CCccEEEEcCCCh
Q 017460 255 GGADYSFECIGDT 267 (371)
Q Consensus 255 gg~dvVid~~g~~ 267 (371)
-.+|+++.|...+
T Consensus 96 ~~~DVlipaA~~~ 108 (217)
T cd05211 96 LDVDIFAPCALGN 108 (217)
T ss_pred ccccEEeeccccC
Confidence 2688888888764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.4 Score=38.80 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=48.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHH-HHc---CCc-eE--eCCCCCCchHHHHHHHHh---
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA-KAF---GVT-EF--LNPNDNNEPVQQVIKRIT--- 253 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~-~~l---g~~-~v--i~~~~~~~~~~~~v~~~~--- 253 (371)
.+.+++|+|+ |.+|...+..+...|+ +|++. .++.++.+.+ .++ +.. .+ .|.++ .+.+.+.+++..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNS-IDGVKKLVEQLKNEL 82 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCC-HHHHHHHHHHHHHHh
Confidence 3578999986 9999999998888898 77664 5666554332 222 321 12 35442 233333333321
Q ss_pred ----C-CCccEEEEcCCC
Q 017460 254 ----D-GGADYSFECIGD 266 (371)
Q Consensus 254 ----~-gg~dvVid~~g~ 266 (371)
+ +++|++|.+.|.
T Consensus 83 ~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGI 100 (254)
T ss_pred ccccCCCCccEEEECCCC
Confidence 1 268999998864
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.43 Score=44.27 Aligned_cols=99 Identities=22% Similarity=0.167 Sum_probs=62.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.++.+||-+|+|. |..+..+++..+..++++++.+++-.+.+++.....-+... ..+..+ + .+..+.||+|+.+-
T Consensus 112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i--~gD~e~-l-p~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKII--EGDAED-L-PFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEE--eccHHh-C-CCCCCceeEEEEcC
Confidence 4678999998876 66777778776544899999999888877654211000000 111111 0 11123799988643
Q ss_pred C-----C-hHHHHHHHHHhccCCceEEEecC
Q 017460 265 G-----D-TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 265 g-----~-~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
. + ...++++.+.|+++ |+++.++.
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPG-G~LvIi~~ 216 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIG-GKACLIGP 216 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 1 1 23578899999998 99887753
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.69 Score=44.61 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=60.5
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-eE--eCCCCCCchHHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-EF--LNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--i~~~~~~~~~~~~v~~~ 252 (371)
...++++|++||=.|+|+ |..++.+++..+..+|++++.++++.+.+ +.+|.. .+ .+.. .... ...
T Consensus 232 ~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d--~~~~----~~~ 304 (426)
T TIGR00563 232 TWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGD--GRGP----SQW 304 (426)
T ss_pred HHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccc--cccc----ccc
Confidence 345678899999887654 33334445544423999999999988766 446664 22 2221 1110 001
Q ss_pred -hCCCccEEEE---cCCC-------------------------hHHHHHHHHHhccCCceEEEe
Q 017460 253 -TDGGADYSFE---CIGD-------------------------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 253 -~~gg~dvVid---~~g~-------------------------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
..+.||.||- |+|. ...+..+++.|+++ |+++..
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvys 367 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYA 367 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEE
Confidence 1237999863 4442 13567788899998 998754
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.48 Score=45.23 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=48.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC--Cce-EeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG--VTE-FLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg--~~~-vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
++++++|.|+ |++|.+.+..+...|+ +|+++++++++.+.. .+.+ ... ..|.. + .+.+.+.. +++|++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvs--d---~~~v~~~l-~~IDiL 249 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVG--Q---EAALAELL-EKVDIL 249 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCC--C---HHHHHHHh-CCCCEE
Confidence 3689999986 9999999988888899 999998887665432 2111 111 12433 2 12233332 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|.+.|.
T Consensus 250 InnAGi 255 (406)
T PRK07424 250 IINHGI 255 (406)
T ss_pred EECCCc
Confidence 988763
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.69 Score=41.60 Aligned_cols=94 Identities=17% Similarity=0.288 Sum_probs=64.6
Q ss_pred hcchhhhhHHhHhhhhcCC-CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVADI-SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~-~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
..||.....+..+ +..++ -.|.+++|+|- ..+|.-.+.+++..|+ .|+++.+...
T Consensus 138 ~~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs~T~--------------------- 194 (285)
T PRK10792 138 LRPCTPRGIMTLL-ERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHRFTK--------------------- 194 (285)
T ss_pred CCCCCHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEECCCC---------------------
Confidence 4455544445444 54454 35999999996 5699999999999999 8888754321
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
++.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|..
T Consensus 195 ~l~~~~~-----~ADIvi~avG~p~~v~~--~~vk~g-avVIDvGin 233 (285)
T PRK10792 195 NLRHHVR-----NADLLVVAVGKPGFIPG--EWIKPG-AIVIDVGIN 233 (285)
T ss_pred CHHHHHh-----hCCEEEEcCCCcccccH--HHcCCC-cEEEEcccc
Confidence 2222222 58999999998765443 668886 788888854
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.69 Score=42.66 Aligned_cols=87 Identities=23% Similarity=0.339 Sum_probs=56.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.++.|+|.|.+|++.++.++..|+ +|+..++++. .+..+.+++..+ ++.+.+. ..|+|.-..+
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~~~~~~~~~~y~--------~l~ell~-----~sDii~l~~P 209 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-PEAEKELGARYV--------DLDELLA-----ESDIISLHCP 209 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-hHHHhhcCceec--------cHHHHHH-----hCCEEEEeCC
Confidence 48899999999999999999999999 9999988775 333344443311 1222222 3566654443
Q ss_pred -ChHH----HHHHHHHhccCCceEEEec
Q 017460 266 -DTGM----ITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 -~~~~----l~~~~~~l~~~~G~~v~~g 288 (371)
.+++ -...++.++++ +.+|..+
T Consensus 210 lt~~T~hLin~~~l~~mk~g-a~lVNta 236 (324)
T COG1052 210 LTPETRHLINAEELAKMKPG-AILVNTA 236 (324)
T ss_pred CChHHhhhcCHHHHHhCCCC-eEEEECC
Confidence 2222 13566777776 6766664
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.67 Score=41.17 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=48.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH-H----HcCCc-e--EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA-K----AFGVT-E--FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~-~----~lg~~-~--vi~~~~~~~~~~~~v~~~~~- 254 (371)
+++++||+|+ +++|.+.+..+...|+ +|+.+.+ ++++.+.+ + +.+.. . .+|..+ .+...+.+.+...
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE-PETYKELFKKIDED 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHh
Confidence 4789999986 8999999998888999 7877754 44444332 2 23432 1 235441 2333333333322
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
+.+|+++.+.|
T Consensus 85 ~g~id~lv~nAg 96 (260)
T PRK08416 85 FDRVDFFISNAI 96 (260)
T ss_pred cCCccEEEECcc
Confidence 37899999875
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.49 Score=43.54 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=50.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHH-HHcCC---c-e--EeCCCCCCchHHHHHHHHh--CC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKA-KAFGV---T-E--FLNPNDNNEPVQQVIKRIT--DG 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~-~~lg~---~-~--vi~~~~~~~~~~~~v~~~~--~g 255 (371)
+.++||.|+ +++|.+.+..+...| + +|+.+.++.++.+.+ ++++. . . ..|..+ .......+.++. .+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGS-LDSVRQFVQQFRESGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence 568999986 899999888888889 7 899998888766544 33331 1 1 135441 223333333332 23
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 81 ~iD~lI~nAG~ 91 (314)
T TIGR01289 81 PLDALVCNAAV 91 (314)
T ss_pred CCCEEEECCCc
Confidence 79999998763
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.63 Score=41.06 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=47.8
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh-hHH----HHHHcCCc-e--EeCCCCCCchHHHHHHHHhC--CC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCE----KAKAFGVT-E--FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~-~~~----~~~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
.++||.|+ |.+|...+..+...|+ +|++++++.. +.+ .++..+.. . ..|..+ ...+.+.+..... +.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVAD-LSAHEAMLDAAQAAWGR 80 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence 57899986 9999999998888899 8888876543 221 22233332 1 234441 2333333333332 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 81 id~vi~~ag~ 90 (256)
T PRK12745 81 IDCLVNNAGV 90 (256)
T ss_pred CCEEEECCcc
Confidence 8999998863
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.2 Score=38.32 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=57.3
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSF 261 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVi 261 (371)
++++++||=+|+|+ |..+..+++..|. .+|++++.++.. ..-++ .++..+-.+....+.+...... .+|+|+
T Consensus 49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v-~~i~~D~~~~~~~~~i~~~~~~~~~D~V~ 122 (209)
T PRK11188 49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPMD----PIVGV-DFLQGDFRDELVLKALLERVGDSKVQVVM 122 (209)
T ss_pred CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEeccccc----CCCCc-EEEecCCCChHHHHHHHHHhCCCCCCEEe
Confidence 57888999888764 4455555565542 389999987621 11122 2332211122333444443434 899999
Q ss_pred EcC-----CC------------hHHHHHHHHHhccCCceEEEe
Q 017460 262 ECI-----GD------------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 262 d~~-----g~------------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
... |. ...++.+.+.|+++ |.++..
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~ 164 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVK 164 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEE
Confidence 643 21 12567888899998 998874
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.53 Score=43.35 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=32.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE 225 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~ 225 (371)
.|.+|||+|+ |.+|...+..+...|+ +|+++.++.++.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~ 43 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTDRK 43 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcchH
Confidence 4679999986 9999999988888899 8988877765443
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.57 Score=41.00 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=48.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHHH----HcCCc-eE--eCCCCCCchHHHHHHHHhC--C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKAK----AFGVT-EF--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~~----~lg~~-~v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
+.++||+|+ |.+|...+..+...|+ +|+++ .+++++.+.+. ..+.. .+ .|..+ ...+.+.+..... +
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSS-EEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 468999986 9999998888777899 88888 88877654432 22321 12 24431 2223333333222 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+||.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 79999998864
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.41 Score=37.57 Aligned_cols=86 Identities=27% Similarity=0.388 Sum_probs=52.2
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEc-CChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVD-TNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~-~~~~~~~~~~~-lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
-+|-|+|+|.+|......++..|. .|..+. ++.++.+.+.. ++...+.+.. +.. ..+|++|=++.
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~-----------~~~-~~aDlv~iavp 77 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLE-----------EIL-RDADLVFIAVP 77 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TT-----------GGG-CC-SEEEE-S-
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCcccccccccccccccccccc-----------ccc-ccCCEEEEEec
Confidence 578899999999999999999998 887774 55556666644 3433333321 111 26899999999
Q ss_pred ChHHHHHHHHHhccC----CceEEEe
Q 017460 266 DTGMITTALQSCCDG----WGLAVTL 287 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~----~G~~v~~ 287 (371)
+. .+....+.|+.. .|+++.-
T Consensus 78 Dd-aI~~va~~La~~~~~~~g~iVvH 102 (127)
T PF10727_consen 78 DD-AIAEVAEQLAQYGAWRPGQIVVH 102 (127)
T ss_dssp CC-HHHHHHHHHHCC--S-TT-EEEE
T ss_pred hH-HHHHHHHHHHHhccCCCCcEEEE
Confidence 85 677777777652 1555544
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.53 Score=41.37 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=49.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEE-EcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIG-VDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~-~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||.|+ |.+|...+..+...|+ +|++ ..++.++.+.+ +..+... . .|..+ ..+....+.+...
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGD-VEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4678999986 8999999999988999 7665 46666554332 3334321 2 24431 2333333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 368999998873
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.47 Score=47.98 Aligned_cols=77 Identities=25% Similarity=0.280 Sum_probs=53.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh---------------------hhHHHHHHcCCceEeCCCCC-
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP---------------------EKCEKAKAFGVTEFLNPNDN- 241 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~---------------------~~~~~~~~lg~~~vi~~~~~- 241 (371)
.+++++|+|+|+|+.|+.++..++..|. +|+++++.+ ...+.++++|++..++..-.
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 358 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK 358 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC
Confidence 4568899999999999999999999999 888886543 12345677887655543210
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+... +.++ ..+|.||-++|.
T Consensus 359 ~~~~-~~~~----~~yD~vilAtGa 378 (604)
T PRK13984 359 DIPL-EELR----EKHDAVFLSTGF 378 (604)
T ss_pred cCCH-HHHH----hcCCEEEEEcCc
Confidence 1111 1221 269999999985
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.65 Score=41.80 Aligned_cols=95 Identities=18% Similarity=0.326 Sum_probs=64.1
Q ss_pred hcchhhhhHHhHhhhhcCC-CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVADI-SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~-~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||.....+..+ +..++ -.|.+|+|+|. +.+|.-.+.++...|+ .|++......
T Consensus 137 ~~PcTp~avi~lL-~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga-tVtv~~s~t~--------------------- 193 (284)
T PRK14179 137 MIPCTPAGIMEMF-REYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNA-TVTLTHSRTR--------------------- 193 (284)
T ss_pred CcCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCC-EEEEECCCCC---------------------
Confidence 3454444444433 44444 46999999995 9999999999999999 8887732211
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+..+.++ .+|+||-++|.+..+...+ ++++ ..++.+|...
T Consensus 194 ~l~~~~~-----~ADIVI~avg~~~~v~~~~--ik~G-avVIDvgin~ 233 (284)
T PRK14179 194 NLAEVAR-----KADILVVAIGRGHFVTKEF--VKEG-AVVIDVGMNR 233 (284)
T ss_pred CHHHHHh-----hCCEEEEecCccccCCHHH--ccCC-cEEEEeccee
Confidence 1222222 4899999999887666544 8886 7888887653
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.61 Score=42.11 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=46.3
Q ss_pred EEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc----C---Cc-eEe-CCCCCCchHHHHHHHHhCC-Cc
Q 017460 190 VVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----G---VT-EFL-NPNDNNEPVQQVIKRITDG-GA 257 (371)
Q Consensus 190 VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g---~~-~vi-~~~~~~~~~~~~v~~~~~g-g~ 257 (371)
|||+|+ |++|...+.-+...+.++++.+++++.++..+ +++ . .. .+. -.- +-.-.+.+...... ++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vig--Dvrd~~~l~~~~~~~~p 78 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIG--DVRDKERLNRIFEEYKP 78 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CT--SCCHHHHHHHHTT--T-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceee--cccCHHHHHHHHhhcCC
Confidence 799985 99999888888888877999999999988776 334 1 11 100 011 22244566666666 99
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+||.+..-
T Consensus 79 diVfHaAA~ 87 (293)
T PF02719_consen 79 DIVFHAAAL 87 (293)
T ss_dssp SEEEE----
T ss_pred CEEEEChhc
Confidence 999997764
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.33 Score=43.25 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=49.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+.+++++++.+. ..+.. ..|..+ ...+.+.+.+... +.+|++|
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~---~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id~li 82 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQH---ENYQFVPTDVSS-AEEVNHTVAEIIEKFGRIDGLV 82 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcccccc---CceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 3678999985 9999999999989999 89998887655321 11211 234441 2334444443322 3789999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 83 ~~Ag~ 87 (266)
T PRK06171 83 NNAGI 87 (266)
T ss_pred ECCcc
Confidence 98873
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.49 Score=42.72 Aligned_cols=96 Identities=8% Similarity=-0.001 Sum_probs=57.6
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC-CC-ccEEEEcC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD-GG-ADYSFECI 264 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~-gg-~dvVid~~ 264 (371)
+|||+|+ |.+|...+..+...|. +|.+++|++++.. ..+... ..|..+ .+.+...++.... .+ +|.++-+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~-~V~~~~R~~~~~~---~~~~~~~~~d~~d-~~~l~~a~~~~~~~~g~~d~v~~~~ 75 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV-PFLVASRSSSSSA---GPNEKHVKFDWLD-EDTWDNPFSSDDGMEPEISAVYLVA 75 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC-cEEEEeCCCcccc---CCCCccccccCCC-HHHHHHHHhcccCcCCceeEEEEeC
Confidence 4889986 9999999999988998 8999999887542 224332 235541 2233333322111 25 89998776
Q ss_pred CCh----HHHHHHHHHhccC-CceEEEecC
Q 017460 265 GDT----GMITTALQSCCDG-WGLAVTLGV 289 (371)
Q Consensus 265 g~~----~~l~~~~~~l~~~-~G~~v~~g~ 289 (371)
+.. ......++.+... -.++|.++.
T Consensus 76 ~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 76 PPIPDLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred CCCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence 531 1233445555443 136777654
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.65 Score=45.03 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=47.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh----hHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE----KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~----~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
.+.+++|+|.|.+|.+++.++...|+ +|++.+.+.. ..+.+++.|........ ..+. ...++|+|+
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~-------~~~~~d~vV 73 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIKVICGSH--PLEL-------LDEDFDLMV 73 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCEEEeCCC--CHHH-------hcCcCCEEE
Confidence 36789999998899999999999999 9999986542 22445666765333221 1111 111488888
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|-
T Consensus 74 ~s~gi 78 (447)
T PRK02472 74 KNPGI 78 (447)
T ss_pred ECCCC
Confidence 87754
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.55 Score=46.98 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=53.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|...++.+...|+ +|+.+.++.++.+.+ ++.|... ..|..+ .....+.+.+... +
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSD-ADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 4578999986 9999999888888999 899999988776543 3334321 235442 2333333433322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|++|++.|.
T Consensus 392 ~id~lv~~Ag~ 402 (582)
T PRK05855 392 VPDIVVNNAGI 402 (582)
T ss_pred CCcEEEECCcc
Confidence 78999999874
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.2 Score=43.00 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=60.6
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHH----HcCCce--EeCCCCCCchHHHHHHHHh
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAK----AFGVTE--FLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~----~lg~~~--vi~~~~~~~~~~~~v~~~~ 253 (371)
..++++|++||=.|+|+ |..+++++..++ ..+|++++.++.+++.++ .+|... ++..+ ... +....
T Consensus 232 ~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~D--a~~----l~~~~ 304 (431)
T PRK14903 232 LMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIAD--AER----LTEYV 304 (431)
T ss_pred HhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECc--hhh----hhhhh
Confidence 35678899999887654 333445555542 238999999999988774 466643 22211 111 12122
Q ss_pred CCCccEEEE---cCCCh-------------------------HHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFE---CIGDT-------------------------GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid---~~g~~-------------------------~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.||.|+- |+|.. ..+..+++.+++| |.++..
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYs 365 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG-GILLYS 365 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEE
Confidence 347999873 43321 2366788899997 987654
|
|
| >PLN03013 cysteine synthase | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.5 Score=42.03 Aligned_cols=56 Identities=32% Similarity=0.341 Sum_probs=42.6
Q ss_pred hhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEc---CChhhHHHHHHcCCceEe
Q 017460 180 NVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVD---TNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 180 ~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~lg~~~vi 236 (371)
+...+.+|...+|.. +|+.|++.+..++.+|+ +++++. .+++|++.++.+|++.+.
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~-~~~VvvP~~~s~~K~~~ira~GAeVi~ 226 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGY-RLILTMPASMSMERRVLLKAFGAELVL 226 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCCcHHHHHHHHHcCCEEEE
Confidence 455677886666665 69999999999999999 555553 356788888999987543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 371 | ||||
| 4dl9_A | 396 | Crystal Structure Of S-nitrosoglutathione Reductase | 2e-97 | ||
| 3uko_A | 378 | Crystal Structure Of S-Nitrosoglutathione Reductase | 2e-91 | ||
| 1cdo_A | 374 | Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co | 3e-80 | ||
| 3qj5_A | 374 | S-Nitrosoglutathione Reductase (Gsnor) In Complex W | 1e-77 | ||
| 2fzw_A | 373 | Structure Of The Binary Complex Of The E67l Mutant | 1e-77 | ||
| 1mc5_A | 374 | Ternary Complex Of Human Glutathione-Dependent Form | 1e-77 | ||
| 1teh_A | 373 | Structure Of Human Liver Chichi Alcohol Dehydrogena | 1e-77 | ||
| 6adh_A | 374 | Structure Of Triclinic Ternary Complex Of Horse Liv | 1e-72 | ||
| 1qv6_A | 374 | Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG | 2e-72 | ||
| 1n8k_A | 374 | Horse Liver Alcohol Dehydrogenase Val292thr Mutant | 2e-72 | ||
| 3oq6_A | 374 | Horse Liver Alcohol Dehydrogenase A317c Mutant Comp | 3e-72 | ||
| 1ju9_A | 374 | Horse Liver Alcohol Dehydrogenase Val292ser Mutant | 3e-72 | ||
| 1axg_A | 374 | Crystal Structure Of The Val203->ala Mutant Of Live | 4e-72 | ||
| 1ee2_A | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 5e-72 | ||
| 1ee2_B | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 5e-72 | ||
| 1axe_A | 374 | Crystal Structure Of The Active-Site Mutant Phe93-> | 1e-71 | ||
| 1mgo_A | 374 | Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L | 2e-71 | ||
| 1hdx_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 2e-71 | ||
| 1a71_A | 374 | Ternary Complex Of An Active Site Double Mutant Of | 3e-71 | ||
| 1ht0_A | 374 | Human Gamma-2 Alcohol Dehydrogense Length = 374 | 3e-71 | ||
| 1qlh_A | 374 | Horse Liver Alcohol Dehydrogenase Complexed To Nad | 6e-71 | ||
| 1hdy_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 1e-70 | ||
| 1hdz_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 2e-70 | ||
| 1htb_A | 374 | Crystallization Of Human Beta3 Alcohol Dehydrogenas | 5e-70 | ||
| 3cos_A | 381 | Crystal Structure Of Human Class Ii Alcohol Dehydro | 6e-69 | ||
| 1e3l_A | 376 | P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase | 3e-68 | ||
| 1hso_A | 374 | Human Alpha Alcohol Dehydrogenase (Adh1a) Length = | 4e-68 | ||
| 1e3e_A | 376 | Mouse Class Ii Alcohol Dehydrogenase Complex With N | 5e-68 | ||
| 1agn_A | 373 | X-Ray Structure Of Human Sigma Alcohol Dehydrogenas | 1e-67 | ||
| 1d1t_A | 373 | Mutant Of Human Sigma Alcohol Dehydrogenase With Le | 1e-67 | ||
| 1p0c_A | 373 | Crystal Structure Of The Nadp(H)-Dependent Vertebra | 3e-61 | ||
| 1f8f_A | 371 | Crystal Structure Of Benzyl Alcohol Dehydrogenase F | 1e-31 | ||
| 2nvb_A | 352 | Contribution Of Pro275 To The Thermostability Of Th | 3e-16 | ||
| 1ykf_A | 352 | Nadp-Dependent Alcohol Dehydrogenase From Thermoana | 4e-16 | ||
| 3ftn_A | 352 | Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO | 4e-15 | ||
| 3fsr_A | 352 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 6e-15 | ||
| 2dq4_A | 343 | Crystal Structure Of Threonine 3-Dehydrogenase Leng | 1e-14 | ||
| 3fpl_A | 351 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 2e-14 | ||
| 1ped_A | 351 | Bacterial Secondary Alcohol Dehydrogenase (Apo-Form | 2e-13 | ||
| 2b83_A | 351 | A Single Amino Acid Substitution In The Clostridium | 3e-13 | ||
| 1jqb_A | 351 | Alcohol Dehydrogenase From Clostridium Beijerinckii | 2e-12 | ||
| 3meq_A | 365 | Crystal Structure Of Alcohol Dehydrogenase From Bru | 5e-11 | ||
| 3two_A | 348 | The Crystal Structure Of Cad From Helicobacter Pylo | 1e-10 | ||
| 3gfb_A | 350 | L-Threonine Dehydrogenase (Tktdh) From The Hyperthe | 6e-10 | ||
| 4a2c_A | 346 | Crystal Structure Of Galactitol-1-Phosphate Dehydro | 1e-09 | ||
| 2dfv_A | 347 | Hyperthermophilic Threonine Dehydrogenase From Pyro | 1e-09 | ||
| 2d8a_A | 348 | Crystal Structure Of Ph0655 From Pyrococcus Horikos | 1e-09 | ||
| 3fpc_A | 352 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 5e-09 | ||
| 1rjw_A | 339 | Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd | 1e-08 | ||
| 1llu_A | 342 | The Ternary Complex Of Pseudomonas Aeruginosa Alcoh | 2e-08 | ||
| 3pii_A | 339 | Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog | 2e-08 | ||
| 1vj0_A | 380 | Crystal Structure Of Alcohol Dehydrogenase (Tm0436) | 3e-08 | ||
| 3s1l_A | 340 | Crystal Structure Of Apo-Form Furx Length = 340 | 4e-08 | ||
| 2oui_A | 360 | D275p Mutant Of Alcohol Dehydrogenase From Protozoa | 1e-07 | ||
| 2xaa_A | 345 | Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube | 4e-07 | ||
| 4ilk_A | 359 | Crystal Structure Of Short Chain Alcohol Dehydrogen | 9e-07 | ||
| 1y9a_A | 360 | Alcohol Dehydrogenase From Entamoeba Histolotica In | 3e-06 | ||
| 4eez_A | 348 | Crystal Structure Of Lactococcus Lactis Alcohol Deh | 1e-05 | ||
| 3qe3_A | 355 | Sheep Liver Sorbitol Dehydrogenase Length = 355 | 1e-05 | ||
| 4eex_A | 348 | Crystal Structure Of Lactococcus Lactis Alcohol Deh | 2e-05 | ||
| 2eih_A | 343 | Crystal Structure Of Nad-Dependent Alcohol Dehydrog | 2e-05 | ||
| 3jyl_A | 325 | Crystal Structures Of Pseudomonas Syringae Pv. Toma | 3e-05 | ||
| 4ej6_A | 370 | Crystal Structure Of A Putative Zinc-Binding Dehydr | 3e-05 | ||
| 3uog_A | 363 | Crystal Structure Of Putative Alcohol Dehydrogenase | 8e-05 | ||
| 3qwa_A | 334 | Crystal Structure Of Saccharomyces Cerevisiae Zeta- | 3e-04 | ||
| 2h6e_A | 344 | Crystal Structure Of The D-Arabinose Dehydrogenase | 6e-04 | ||
| 2hcy_A | 347 | Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi | 6e-04 | ||
| 1uuf_A | 369 | Crystal Structure Of A Zinc-Type Alcohol Dehydrogen | 7e-04 | ||
| 1yqd_A | 366 | Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ | 8e-04 |
| >pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396 | Back alignment and structure |
|
| >pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378 | Back alignment and structure |
|
| >pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374 | Back alignment and structure |
|
| >pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374 | Back alignment and structure |
|
| >pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373 | Back alignment and structure |
|
| >pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374 | Back alignment and structure |
|
| >pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373 | Back alignment and structure |
|
| >pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374 | Back alignment and structure |
|
| >pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374 | Back alignment and structure |
|
| >pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374 | Back alignment and structure |
|
| >pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374 | Back alignment and structure |
|
| >pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374 | Back alignment and structure |
|
| >pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374 | Back alignment and structure |
|
| >pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381 | Back alignment and structure |
|
| >pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374 | Back alignment and structure |
|
| >pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373 | Back alignment and structure |
|
| >pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373 | Back alignment and structure |
|
| >pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373 | Back alignment and structure |
|
| >pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371 | Back alignment and structure |
|
| >pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352 | Back alignment and structure |
|
| >pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352 | Back alignment and structure |
|
| >pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352 | Back alignment and structure |
|
| >pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352 | Back alignment and structure |
|
| >pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343 | Back alignment and structure |
|
| >pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351 | Back alignment and structure |
|
| >pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351 | Back alignment and structure |
|
| >pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351 | Back alignment and structure |
|
| >pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351 | Back alignment and structure |
|
| >pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365 | Back alignment and structure |
|
| >pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348 | Back alignment and structure |
|
| >pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350 | Back alignment and structure |
|
| >pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346 | Back alignment and structure |
|
| >pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347 | Back alignment and structure |
|
| >pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348 | Back alignment and structure |
|
| >pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352 | Back alignment and structure |
|
| >pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339 | Back alignment and structure |
|
| >pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342 | Back alignment and structure |
|
| >pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339 | Back alignment and structure |
|
| >pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380 | Back alignment and structure |
|
| >pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340 | Back alignment and structure |
|
| >pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360 | Back alignment and structure |
|
| >pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345 | Back alignment and structure |
|
| >pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359 | Back alignment and structure |
|
| >pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360 | Back alignment and structure |
|
| >pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348 | Back alignment and structure |
|
| >pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355 | Back alignment and structure |
|
| >pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348 | Back alignment and structure |
|
| >pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343 | Back alignment and structure |
|
| >pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325 | Back alignment and structure |
|
| >pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370 | Back alignment and structure |
|
| >pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363 | Back alignment and structure |
|
| >pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334 | Back alignment and structure |
|
| >pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344 | Back alignment and structure |
|
| >pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347 | Back alignment and structure |
|
| >pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369 | Back alignment and structure |
|
| >pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373 | Back alignment and structure |
|---|
Score = 544 bits (1404), Expect = 0.0
Identities = 170/371 (45%), Positives = 241/371 (64%), Gaps = 10/371 (2%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----- 63
+VI CKAAVAW AG+PL +EE+EV PP+ E+RIK++ T++C +D P+
Sbjct: 3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 64 -----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 118
IVESVG GVT+ G+ V+ ++I +C C+ C + K+N C+ + + + +
Sbjct: 63 ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 122
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 178
D +RF+ KGK + HY S+FSEYTVV K+ +APL+K+CLL CG+S G GAA
Sbjct: 123 PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAA 182
Query: 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
N A + GS +FGLG VGL+V G K GASRIIGVD N +K +AK FG TE +NP
Sbjct: 183 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP 242
Query: 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA 298
D ++P+Q+V+ +TDGG DYSFECIG+ ++ AL++C GWG++V +GV E+A
Sbjct: 243 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIAT 302
Query: 299 HYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK 358
++GRT KG+ FGGWK +P LV+ Y+ K+ VDEF+THNL F++IN+AF LM
Sbjct: 303 RPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMH 362
Query: 359 EGKCLRSVIHM 369
GK +R+V+ +
Sbjct: 363 SGKSIRTVVKI 373
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376 | Back alignment and structure |
|---|
Score = 536 bits (1382), Expect = 0.0
Identities = 160/373 (42%), Positives = 221/373 (59%), Gaps = 15/373 (4%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQC---- 64
+VI CKAA+AW G PL +EE+EV+PP+ E+RI+V+ T +C +DI A + +
Sbjct: 5 KVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVV 64
Query: 65 -----CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER----RG 115
IVESVGPGVT F G+ V+ F +CK C+ C S +N C L +
Sbjct: 65 LGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQ 124
Query: 116 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGL 175
+ D+ +RF+ KG+ +YH+ VSSFS+YTVV +V A LE++CL+ CG S+G
Sbjct: 125 ELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGY 184
Query: 176 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235
GAA N A ++ GST +FGLG VGLS G K GASRII +D N EK KAKA G T+
Sbjct: 185 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDC 244
Query: 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE 295
LNP + ++PVQ VI +T GG DYS +C G + A+ GWG +G E
Sbjct: 245 LNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK--VDE 302
Query: 296 VAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFN 355
+ + GR++ G+ FGGWK +P+LV+ Y K+F +D +TH L FE IN A +
Sbjct: 303 MTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAID 362
Query: 356 LMKEGKCLRSVIH 368
LMKEGK +R+++
Sbjct: 363 LMKEGKSIRTILT 375
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374 | Back alignment and structure |
|---|
Score = 534 bits (1378), Expect = 0.0
Identities = 162/370 (43%), Positives = 230/370 (62%), Gaps = 11/370 (2%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQC---- 64
+VI CKAAV W +P +EEVEV PP+ E+RIK+V T +CRSD
Sbjct: 5 KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 65 -----CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMH 118
IVES+G GVT G+ V+ +F +C CR CK + N C L RG M
Sbjct: 65 AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM- 123
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 178
D +RF+ +GKP++H+ S+FS+YTVV K+ + +PLEK+CL+ CG S G G+A
Sbjct: 124 QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSA 183
Query: 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
VA +++GST +FGLG VGLSV G KA GA+RIIGVD N +K KAK G TE +NP
Sbjct: 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP 243
Query: 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA 298
D +P+Q+V+ +++GG D+SFE IG + TAL C + +G++V +GVP ++
Sbjct: 244 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSM 303
Query: 299 HYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK 358
+ L LSGRT KG++FGG+K K +P LV ++ K+F +D ITH L FE IN+ F+L++
Sbjct: 304 NPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLR 363
Query: 359 EGKCLRSVIH 368
G+ +R+++
Sbjct: 364 SGESIRTILT 373
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374 | Back alignment and structure |
|---|
Score = 531 bits (1370), Expect = 0.0
Identities = 172/371 (46%), Positives = 240/371 (64%), Gaps = 11/371 (2%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----- 63
+VI CKAAVAW A +PLV+EE+EV+ P EIRIK++ T +C +D+ +
Sbjct: 5 KVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPV 64
Query: 64 -----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 118
IVESVGPGVTEF GE V+ +FI +C CR C+S K+N C +
Sbjct: 65 VLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM 124
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 178
S ++TRF+ KG+ V + S+FS+YTVV+ K+ APL+ +CLL CG+S G GAA
Sbjct: 125 SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAA 184
Query: 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
N A + GST +FGLG VGL+ G + GA RII VD NP+K EKAK FG T+F+NP
Sbjct: 185 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP 244
Query: 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA 298
ND++EP+ QV+ ++T+GG D+S EC+G+ G++ AL+SC GWG++V +G L +VA
Sbjct: 245 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLH-DVAT 303
Query: 299 HYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMK 358
++GRT KGS+FGG+K K +P +V YL K+ +DEFITH + E +N A +LMK
Sbjct: 304 RPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMK 363
Query: 359 EGKCLRSVIHM 369
GKC+R+V+ +
Sbjct: 364 HGKCIRTVLSL 374
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373 | Back alignment and structure |
|---|
Score = 530 bits (1368), Expect = 0.0
Identities = 155/378 (41%), Positives = 223/378 (58%), Gaps = 16/378 (4%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
M T + ITCKAAVAW +PL +E + V PP+ E+RIK++ + +C SD + +
Sbjct: 1 MCT---AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEI 57
Query: 61 WPQC---------CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGL 111
P +VES+G GVT G+ V+ +F+ +C +CR CKS SN CE +
Sbjct: 58 IPSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDM 117
Query: 112 ER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCG 170
G+M +D +RF+ +GKP+Y+ S+F+EYTVV K+ APLE CL+ CG
Sbjct: 118 GAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCG 175
Query: 171 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230
+ G GAA N A ++ GST +FGLG VG S G KA GASRIIGV T+ +K KA
Sbjct: 176 FATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 235
Query: 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290
G TE LNP D ++P+ +VI T+GG DY+ EC G + ALQS G G+ V LG+
Sbjct: 236 GATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLA 295
Query: 291 KLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDI 350
+ L L+GR+LKGS+FGG+K + ++ LV+ Y+KK+ V+ ++ L + I
Sbjct: 296 SPNERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQI 354
Query: 351 NQAFNLMKEGKCLRSVIH 368
N+AF L+ G+ +RS++
Sbjct: 355 NKAFELLSSGQGVRSIMI 372
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371 | Back alignment and structure |
|---|
Score = 446 bits (1151), Expect = e-158
Identities = 110/374 (29%), Positives = 173/374 (46%), Gaps = 19/374 (5%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----- 63
++ AAV G ++ +++ PQ +E+ +KVV T +C +D+ + ++P
Sbjct: 3 ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAV 62
Query: 64 ----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE-VLGLERRGVMH 118
I+E++GP VTE G+HV+ + G C C QC + C G G
Sbjct: 63 LGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD- 120
Query: 119 SDQQTRFSIKGKPVY--HYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 176
S+ + V H+ A SSF+ Y + VKV+ P+E + L CG+ G G
Sbjct: 121 SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAG 180
Query: 177 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
A N ++ S+ V +G G VGLS AK GAS II VD + E AK G T +
Sbjct: 181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI 240
Query: 237 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEV 296
N + IK ITDGG +++ E G ++ + + G +G P+L
Sbjct: 241 NSKT--QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTA 297
Query: 297 AAH-YGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFN 355
L L G+T+ G + G PK +P LV Y + +F D+ + F++INQA
Sbjct: 298 QFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAI 356
Query: 356 LMKEGKCLRSVIHM 369
++G L+ +I +
Sbjct: 357 DSRKGITLKPIIKI 370
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380 | Back alignment and structure |
|---|
Score = 377 bits (971), Expect = e-130
Identities = 80/379 (21%), Positives = 143/379 (37%), Gaps = 36/379 (9%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ------- 63
+ A V QPLV +E E++ I ++++ +C SD+ + + P+
Sbjct: 16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 64 ---CCRIVESVGPGVT-----EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRG 115
V V G+ ++ C C CK K R+
Sbjct: 76 GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYL---CPNRKV 132
Query: 116 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAG 174
+ + + H +S + V+ +KVS L+ + + C +
Sbjct: 133 YGINRGCSEYP-------HL--RGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATA 183
Query: 175 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234
A + G TVVI G G +GL A++ GA +I + +P + + A+ G
Sbjct: 184 YHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL 243
Query: 235 FLNPND-NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKL 292
LN + + E ++ I IT G GAD+ E GD+ + + G G GV
Sbjct: 244 TLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVP 302
Query: 293 KPEVA--AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDI 350
+ V + L L T KG + V+ + ++ + ITH L ++
Sbjct: 303 QDPVPFKVYEWLVLKNATFKGIWVSDT---SHFVKTVSITSRNYQLLSKLITHRLPLKEA 359
Query: 351 NQAFNLMKEGKCLRSVIHM 369
N+A LM+ + L+ +++
Sbjct: 360 NKALELMESREALKVILYP 378
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 1e-70
Identities = 80/369 (21%), Positives = 129/369 (34%), Gaps = 42/369 (11%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR------- 66
KA G VV ++ P P EI +KV LC SDI + Q
Sbjct: 2 KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61
Query: 67 -----IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
V +G GVT F G+ V C C C + N C
Sbjct: 62 HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCT-------------- 107
Query: 122 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWN 180
R + G + S +EY +V S + + P+ L GL+ +
Sbjct: 108 --RAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRV 165
Query: 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240
+ + GST V+ G+G +G Q +A A+R+I VD + ++ A+ G +
Sbjct: 166 LPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA 225
Query: 241 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH 299
I+ +T G GA F+ +G I TA Q G +G+
Sbjct: 226 G---AADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGAHAKVG- 280
Query: 300 YGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKE 359
+ + G ++ +G +L +V + T ++ A+ ++E
Sbjct: 281 FFMIPFGASVVTPYWGTRS---ELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLRE 334
Query: 360 GKCL-RSVI 367
G R V+
Sbjct: 335 GSIRGRGVV 343
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 3e-58
Identities = 69/376 (18%), Positives = 139/376 (36%), Gaps = 52/376 (13%)
Query: 14 KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR------ 66
KAA +PL +E+V+ ++ +++ +C +D+ + W + +
Sbjct: 17 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 76
Query: 67 -------IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
+E V GV +G+ V+ TC C++ + CE +
Sbjct: 77 LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCE-----------N 125
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIC----LLSCGLSAGL 175
+ +I G F+E+ +K+ EK+ L G++A
Sbjct: 126 LEFPGLNIDG----------GFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYR 175
Query: 176 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235
+ G+ V I G+G +G Q K + +I +D EK + A+ G
Sbjct: 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHV 235
Query: 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP-KLKP 294
++ + PV+QV++ G + + + +G + G + +G +L+
Sbjct: 236 VDARRD--PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGGELRF 292
Query: 295 EVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAF 354
+ S + +GSL G +L LV L+ + V ++IN
Sbjct: 293 PTI---RVISSEVSFEGSLVG---NYVELHELVTLALQGKVRV---EVDIHKLDEINDVL 343
Query: 355 NLMKEGKCLRSVIHMP 370
+++G+ L + +P
Sbjct: 344 ERLEKGEVLGRAVLIP 359
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-54
Identities = 93/379 (24%), Positives = 142/379 (37%), Gaps = 64/379 (16%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQWPQ--------- 63
A + G + EV+V P P E+ IKV+ TS+C +D+ +E +W Q
Sbjct: 6 VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65
Query: 64 ---CCRIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKSDKSNTCE---VLGLER 113
V +GPGV G++V E C C C+ + + C+ + G++
Sbjct: 66 GHEVAGEVVEIGPGVEGIEVGDYV----SVETHIVCGKCYACRRGQYHVCQNTKIFGVDT 121
Query: 114 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCG 170
G F+EY VV + K P E L L
Sbjct: 122 DG------------------------VFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNA 157
Query: 171 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230
+ L G +V+I G G +GL AKA GA +I + + + E AK
Sbjct: 158 VDTVLAG------PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV 211
Query: 231 GVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289
G +NP + E V + + ITDG G D E G + LQ+ G LG+
Sbjct: 212 GADYVINPFE--EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL 268
Query: 290 PKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNL-LFE 348
K + + + T+ G G ++ + +D ITH F+
Sbjct: 269 YPGKVTIDFNNLIIFKALTIYGIT--GRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFD 326
Query: 349 DINQAFNLMKEGKCLRSVI 367
+AF LM+ GK + V
Sbjct: 327 KYEEAFELMRAGKTGKVVF 345
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 5e-54
Identities = 85/378 (22%), Positives = 139/378 (36%), Gaps = 62/378 (16%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET-QWPQ--------- 63
+A + L + + V P P EI ++V S+C +D+ W+ W +
Sbjct: 2 RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61
Query: 64 ---CCRIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKSDKSNTCE---VLGLER 113
+VE+VGPGV G+HV E C C C++ + C +LG++R
Sbjct: 62 GHEFSGVVEAVGPGVRRPQVGDHV----SLESHIVCHACPACRTGNYHVCLNTQILGVDR 117
Query: 114 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCG 170
G F+EY VV + A P E +
Sbjct: 118 DG------------------------GFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNA 153
Query: 171 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230
+ G +V+I G G +GL A +A GA I+ D NP + A+ +
Sbjct: 154 V-----HTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY 208
Query: 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290
+NP + E + +V++R+T G + E G+ I L + G G A LG+P
Sbjct: 209 A-DRLVNPLE--EDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIP 264
Query: 291 KLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDI 350
L + G T G G + + +TH L
Sbjct: 265 SDPIRFDLAGELVMRGITAFGIA--GRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRY 322
Query: 351 NQAFNLMKEGKCLRSVIH 368
+AF L+ G+ ++ ++
Sbjct: 323 REAFGLLASGQAVKVILD 340
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 7e-54
Identities = 77/378 (20%), Positives = 132/378 (34%), Gaps = 64/378 (16%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------C 64
KA G + V V + P P+++ +KV +C +D ++P
Sbjct: 25 KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTPPVTLGHEF 83
Query: 65 CRIVESVGPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCE---VLGLERRGVMHSD 120
C IV G V + G + T C C QC++ + N C +G+ R G
Sbjct: 84 CGIVVEAGSAVRDIAPGARI-TGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDG----- 137
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSAGLGA 177
F+EY +V A ++ L+C L
Sbjct: 138 -------------------GFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL-----H 173
Query: 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
+++ I GSTV I G G +GL Q A+ GA+ +I K A+ G T ++
Sbjct: 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVD 233
Query: 238 PNDNNEPVQQVIKRITDG---GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP 294
P+ V + I G D EC G + + + G G V LGV
Sbjct: 234 PSA--GDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGE 290
Query: 295 EVA-AHYGLFLSGRTLKGSLFGG---WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDI 350
+V + + + GS F + DL + ++ +D I+ + ++
Sbjct: 291 KVEIEPFDILFRELRVLGS-FINPFVHRRAADL--VATGAIE----IDRMISRRISLDEA 343
Query: 351 NQAFNLMKEGKCLRSVIH 368
+ ++ ++
Sbjct: 344 PDVISNPAAAGEVKVLVI 361
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 9e-54
Identities = 76/379 (20%), Positives = 142/379 (37%), Gaps = 60/379 (15%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR------- 66
+A G+PL ++E+ V P+ ++ IKV +C SD+ + ++
Sbjct: 2 RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 67 -----------IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLE 112
+E VG V +++G+ V C C+ + + C+ LG+
Sbjct: 62 LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGIN 121
Query: 113 RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS 172
G +++EY +V + + L+C
Sbjct: 122 FDG------------------------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTC--- 154
Query: 173 AGLGA--AWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229
+G+ A A + T+++ G G +G Q AKA + IIGVD E E AK
Sbjct: 155 SGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR 214
Query: 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289
G +N + + P+ ++ + G D + ++ ++ G V +G+
Sbjct: 215 AGADYVINASMQD-PLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGL 272
Query: 290 PKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFED 349
A + LS GSL G ++D ++ L + V IT + E+
Sbjct: 273 FGADLHYHA-PLITLSEIQFVGSLVG---NQSDFLGIMR--LAEAGKVKPMITKTMKLEE 326
Query: 350 INQAFNLMKEGKCL-RSVI 367
N+A + ++ K + R V+
Sbjct: 327 ANEAIDNLENFKAIGRQVL 345
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 4e-51
Identities = 74/378 (19%), Positives = 134/378 (35%), Gaps = 57/378 (15%)
Query: 14 KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWETQWP---------Q 63
K+ V G + V E + +E+R+K+ + LC SD+ +
Sbjct: 2 KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHE 60
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGE-CKTCRQCKSDKSNTCE---VLGLERRGVMHS 119
+++VG GV + + G+ V C TC +C + C +G R G
Sbjct: 61 FSGYIDAVGSGVDDLHPGDAV-ACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDG---- 115
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSAGLG 176
F+EY VV + + P+E ++ GL
Sbjct: 116 --------------------GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL----- 150
Query: 177 AAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
A+++A + V+I G GT+GL Q A A GA + +D + EK AK+FG +
Sbjct: 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTF 210
Query: 237 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK--LK 293
N ++ Q+ + + E G + A++ +G L
Sbjct: 211 NSSE--MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLH 267
Query: 294 PEVAAHYGLFLSGRTLKGSL--FGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDIN 351
A + T+ GS + P + + +++ ++ I H FE
Sbjct: 268 LTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFA 327
Query: 352 QAFN-LMKEGKCLRSVIH 368
QA + + + ++
Sbjct: 328 QAVRDIARNAMPGKVLLI 345
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 4e-51
Identities = 76/377 (20%), Positives = 141/377 (37%), Gaps = 58/377 (15%)
Query: 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR----- 66
KAA+ +PL +E+V + PQ EE+ I++ +CR+D+ W+ +
Sbjct: 3 KSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPII 62
Query: 67 -------IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGV 116
+ VG + + +G++V+ TCR C+ K N C+ + G G
Sbjct: 63 LGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNG- 120
Query: 117 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSC-GLSA-- 173
FSEY +V S + + + L+ G ++
Sbjct: 121 -----------------------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMG 157
Query: 174 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGV 232
+ A V++ G+G + + Q KA + I+G+ + + + A G
Sbjct: 158 AIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA 217
Query: 233 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291
D + +I ++TDG GA + + +G + G + +G+
Sbjct: 218 DYVSEMKD----AESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEG 272
Query: 292 LKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDIN 351
+ + A + + + L GS +G D+ L K + +DIN
Sbjct: 273 KRVSLEA-FDTAVWNKKLLGSNYGSLNDLEDVVRLSESGKIK------PYIIKVPLDDIN 325
Query: 352 QAFNLMKEGKCL-RSVI 367
+AF + EG+ R VI
Sbjct: 326 KAFTNLDEGRVDGRQVI 342
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 5e-49
Identities = 74/390 (18%), Positives = 119/390 (30%), Gaps = 76/390 (19%)
Query: 14 KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWETQWPQ--------- 63
+ W + + VEEV +P EI IKV +C SD+ +T
Sbjct: 32 LGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTG 90
Query: 64 --------CCRIVESVGPGVTE------FNEGEHVLTVFIGECKTCRQCKSDKSNTCE-- 107
+V GP F GE V + C CR C N CE
Sbjct: 91 FPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENL 150
Query: 108 -VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-------SSIA 159
LG G +F+EY V + A +
Sbjct: 151 NELGFNVDG------------------------AFAEYVKVDAKYAWSLRELEGVYEGDR 186
Query: 160 PLEKICL---LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIG 216
L S +A I G VVI G G +GL+ K GAS++I
Sbjct: 187 LFLAGSLVEPTSVAYNA---VIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL 243
Query: 217 VDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQ 275
+ + + AK G ++P E + + T+G GA E G ++ ++
Sbjct: 244 SEPSEVRRNLAKELGADHVIDP--TKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIE 301
Query: 276 SCCD----GWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYL 331
+ K + + + GS G P ++ +
Sbjct: 302 EVIWRARGINATVAIVARADAKIPLTGEV-FQVRRAQIVGSQ--GHSGHGTFPRVI-SLM 357
Query: 332 KKEFMVDEFITHNLLFEDINQAFNLMKEGK 361
+ + I+ + E+I + ++ K
Sbjct: 358 ASGMDMTKIISKTVSMEEIPEYIKRLQTDK 387
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 5e-47
Identities = 73/384 (19%), Positives = 129/384 (33%), Gaps = 67/384 (17%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--------TQWPQC- 64
+ V G G L +E + P P E+ +++ +C SD+ WE + P
Sbjct: 9 LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67
Query: 65 ----CRIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKSDKSNTCEVLGLERRGV 116
VE VG V G+ V E + CK + N +
Sbjct: 68 GHEASGTVEKVGSSVKHLKPGDRV----AIEPGAPRENDEFCKMGRYNLSP--SIFFCAT 121
Query: 117 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSA 173
D G + + ++ K+ E+ L LS G+
Sbjct: 122 PPDD--------G----------NLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI-- 161
Query: 174 GLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
A ++ G V++ G G +G+ AKA GA++++ D + + KAK G
Sbjct: 162 ---HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD 218
Query: 234 EFLNPNDNNEPVQQVIKRITD---GGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290
L + E Q++ +++ + + EC G I + + G G V +G+
Sbjct: 219 LVLQISK--ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLG 275
Query: 291 KLKPEVAAHYGLFLS-GRTLKGSL--FGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLF 347
+KG W + L ++ + V +TH
Sbjct: 276 --SEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISM--LASKSVN----VKPLVTHRFPL 327
Query: 348 EDINQAFNLMKEGKCLRSVIHMPK 371
E +AF K+G L+ ++
Sbjct: 328 EKALEAFETFKKGLGLKIMLKCDP 351
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 8e-45
Identities = 77/373 (20%), Positives = 135/373 (36%), Gaps = 44/373 (11%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TAWETQWPQ--------- 63
K G+ + E E P P + ++ + + C SDI T +E +
Sbjct: 2 KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
V VG V +F G+ V+ I + + +
Sbjct: 61 AVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGML----AGWKFSNV- 115
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVH--SGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 181
G F E+ V+ + PLE ++ ++ G A
Sbjct: 116 ---KDG----------VFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAEL- 161
Query: 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241
A+I G TV + G+G VGL GA GA RI V + C+ A +G T+ +N +
Sbjct: 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN- 220
Query: 242 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA--- 297
+ + I + TDG G D GD A++ G + + +
Sbjct: 221 -GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGN-VNYLGEGDNIDIPR 278
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNL-LFEDINQAFNL 356
+ +G+ + + + G L G + + L++ K + +TH F++I +AF L
Sbjct: 279 SEWGVGMGHKHIHGGLCPG--GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFML 336
Query: 357 MKEGK--CLRSVI 367
MK+ ++ V+
Sbjct: 337 MKDKPKDLIKPVV 349
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 5e-44
Identities = 73/390 (18%), Positives = 126/390 (32%), Gaps = 66/390 (16%)
Query: 1 MSTSIKQPQ--VITCKAAVAWGAGQPLVVEEVEVNP-PQPEEIRIKVVCTSLCRSDITAW 57
M++S + V T W + +E V+ + E+ + V T +C SD+ W
Sbjct: 1 MASSASKTNIGVFTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFW 60
Query: 58 ET-QWPQ------------CCRIVESVGPGVTEFNEGEHVLTVFIGE----CKTCRQCKS 100
+ V +V P V G+ V E C C C +
Sbjct: 61 KHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRV----AIEPQVICNACEPCLT 116
Query: 101 DKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160
+ N CE ++ G Y + K+ ++
Sbjct: 117 GRYNGCE--RVDFLSTPPVP--------G----------LLRRYVNHPAVWCHKIGNM-S 155
Query: 161 LEKICL---LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGV 217
E + LS L A A + G V+I G G +GL AKA GA ++
Sbjct: 156 YENGAMLEPLSVAL-----AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVIT 210
Query: 218 DTNPEKCEKAKAFGVTEFLNPNDNN---EPVQQVIKRITDGGADYSFECIGDTGMITTAL 274
D + + + AK + + E +++++ + EC G I A+
Sbjct: 211 DIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAI 270
Query: 275 QSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSL--FGGWKPKTDLPSLVNRYLK 332
+ G G +GV K + ++ + L+ W L + N +
Sbjct: 271 WAVKFG-GKVFVIGVGKNEIQIPFMR-ASVREVDLQFQYRYCNTWPRAIRL--VENGLVD 326
Query: 333 KEFMVDEFITHNLLFEDINQAFNLMKEGKC 362
+ +TH ED +AF + K
Sbjct: 327 ----LTRLVTHRFPLEDALKAFETASDPKT 352
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-43
Identities = 77/384 (20%), Positives = 137/384 (35%), Gaps = 64/384 (16%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE--------TQWPQ-- 63
+AV + L +E+ + P+ +E+ +++ +C SD+ +E + P
Sbjct: 6 LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64
Query: 64 ---CCRIVESVGPGVTEFNEGEHVL---TVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 117
V VG V +G+ V V C+ C+ CK K N C L
Sbjct: 65 GHEASGTVVKVGKNVKHLKKGDRVAVEPGVP---CRRCQFCKEGKYNLCP--DLTFCATP 119
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL---LSCGLSAG 174
D G + + Y V + K+ LE+ L LS G+
Sbjct: 120 PDD--------G----------NLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV--- 158
Query: 175 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234
A A + G+TV++ G G +GL AKA GA ++ +P + E AK G
Sbjct: 159 --HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADV 215
Query: 235 FLNPNDNNEPVQQVIKRITDG---GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291
L + E +I+RI + + +C G+ IT + G G + +G+
Sbjct: 216 TLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS 274
Query: 292 LKPEVAAHYGLFLSGRTLKGSL-FGG-WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFED 349
V +K + + ++ + V + +TH+ E
Sbjct: 275 QMVTVPLVN-ACAREIDIKSVFRYCNDYPIALEMVA------SGRCNVKQLVTHSFKLEQ 327
Query: 350 INQAFNLMKEGK--CLRSVIHMPK 371
AF ++ ++ +I +
Sbjct: 328 TVDAFEAARKKADNTIKVMISCRQ 351
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 5e-40
Identities = 81/384 (21%), Positives = 144/384 (37%), Gaps = 65/384 (16%)
Query: 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR----- 66
T K + + + L +++ V P+ E+ I V + +C +D+ AW WP +
Sbjct: 5 TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64
Query: 67 ------IVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
+V +G V + G++ + G C C C+ + C H+
Sbjct: 65 GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCP----------HA 114
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG--A 177
D ++ G SF +Y + A + L ++ + C AG+
Sbjct: 115 DLSG-YTHDG----------SFQQYATADAVQAAHIPQGTDLAQVAPILC---AGITVYK 160
Query: 178 AWNVADISKGSTVVIFGLGTVGL-SVA-QGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235
A A++ G V I G GL S+A Q AKA G R++G+D K E ++ G F
Sbjct: 161 ALKSANLMAGHWVAISGAAG-GLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVF 218
Query: 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE 295
++ + V V+K TDGGA I + + G V +G+P
Sbjct: 219 IDFTKEKDIVGAVLK-ATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAGAKC 276
Query: 296 VAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLL-------FE 348
+ + + ++ GS G D +E +D F +
Sbjct: 277 CSDVFNQVVKSISIVGSYVGNRA---DT---------RE-ALDFFARGLVKSPIKVVGLS 323
Query: 349 DINQAFNLMKEGKCL-RSVIHMPK 371
+ + + M++G+ + R V+ K
Sbjct: 324 TLPEIYEKMEKGQIVGRYVVDTSK 347
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-39
Identities = 55/384 (14%), Positives = 113/384 (29%), Gaps = 64/384 (16%)
Query: 14 KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWETQWPQ--------- 63
KA + + V++V+ +I+I+ + +C +D +
Sbjct: 2 KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61
Query: 64 ------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 117
+VE G ++ G+ V+ V C CR C + + CE G+
Sbjct: 62 LVLGHEAIGVVEESYHGFSQ---GDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK----VSSIA----PL---EKICL 166
D G E+ VK + I PL EK
Sbjct: 119 KMD--------G----------FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIE 160
Query: 167 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226
+ + V++ G G +G+ + G + P + E+
Sbjct: 161 EILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQ 220
Query: 227 AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG-DTGMITTALQSCCDGWGLAV 285
N +++ ++ + + G D + G D ++ + G+
Sbjct: 221 TVIEETK--TNYYNSSNGYDKL--KDSVGKFDVIIDATGADVNILGNVIPLLGRN-GVLG 275
Query: 286 TLGVPKLKPEVAAHYG----LFLSGRTLKGSLFGG---WKPKTDLPSLVNRYLKKEFMVD 338
G V Y + + +T+ G + G ++ L +
Sbjct: 276 LFGFST-SGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVH--LASWKTLYPKAAK 332
Query: 339 EFITHNLLFEDINQAFNLMKEGKC 362
IT + D + +++E +
Sbjct: 333 MLITKTVSINDEKELLKVLREKEH 356
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 5e-39
Identities = 92/382 (24%), Positives = 142/382 (37%), Gaps = 65/382 (17%)
Query: 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR----- 66
KAAV G PL ++EV V P P ++++K+ + +C +D+ A + WP
Sbjct: 2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIP 61
Query: 67 ------IVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
V +VG GV+ EG+ V + C C C CE
Sbjct: 62 GHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCE-----------K 110
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-- 177
Q T +S+ G + EY V + +I + C AG+
Sbjct: 111 QQNTGYSVNG----------GYGEYVVADPNYVGLLPDKVGFVEIAPILC---AGVTVYK 157
Query: 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
V D G VVI G+G +G Q A+A G R+ VD + K A+ G +N
Sbjct: 158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVN 216
Query: 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVA 297
D + P + K I GGA + A+ G G G+P
Sbjct: 217 ARDTD-PAAWLQKEI--GGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPGDFGTP 272
Query: 298 AHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLL-------FEDI 350
+ + L G T++GS+ G DL +E +D ++ +D+
Sbjct: 273 I-FDVVLKGITIRGSIVGTRS---DL---------QE-SLDFAAHGDVKATVSTAKLDDV 318
Query: 351 NQAFNLMKEGKCL-RSVIHMPK 371
N F ++EGK R V+ +
Sbjct: 319 NDVFGRLREGKVEGRVVLDFSR 340
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 8e-38
Identities = 91/381 (23%), Positives = 143/381 (37%), Gaps = 67/381 (17%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR------- 66
KAAV +PL ++EVE E+ +++ +C +D+ A WP +
Sbjct: 2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 67 ----IVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
IVE VGPGVT G+ V + C C C S + CE +
Sbjct: 62 EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE-----------HQK 110
Query: 122 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN- 180
+S+ G ++EY + VK+ E+ + C AG+ +
Sbjct: 111 NAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFC---AGV-TTYKA 156
Query: 181 --VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
V G V I+G+G +G Q AKA G ++ VD EK E AK G +NP
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP 215
Query: 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA 298
E + +K GG + +A S G G V +G+P + +
Sbjct: 216 LK--EDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPEEMPIPI 271
Query: 299 HYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLL-------FEDIN 351
+ L+G + GS+ G K DL + + + E IN
Sbjct: 272 -FDTVLNGIKIIGSIVGTRK---DL----------QEALQFAAEGKVKTIIEVQPLEKIN 317
Query: 352 QAFNLMKEGKCL-RSVIHMPK 371
+ F+ M +G+ R V+ +
Sbjct: 318 EVFDRMLKGQINGRVVLTLED 338
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 7e-36
Identities = 64/369 (17%), Positives = 111/369 (30%), Gaps = 57/369 (15%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE----TQWPQCCRIV- 68
KA VV E P+ E ++ + +C +D +V
Sbjct: 2 KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61
Query: 69 --ES----VGPGVTEFNEGEHV-LTVFIGE-CKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
E+ V P TE EG+ V TV T + D+ +
Sbjct: 62 GHEAVGVVVDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAP------------- 108
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK----VSSIAPLEKICLLSCGLSA-GL 175
+ +G H SE+ V+ + + L I +S A
Sbjct: 109 -DGMYFERGIVGAH----GYMSEFFTSPEKYLVRIPRSQAELGFL--IEPISITEKALEH 161
Query: 176 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKA--RGASRIIGV---DTNPEKCEKAKAF 230
A A S+ + G G++GL K +G + + D + +
Sbjct: 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL 221
Query: 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290
T + E V V D+ +E G ++Q+ G+ LGVP
Sbjct: 222 DATYVDSRQTPVEDVPDVY-----EQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVP 275
Query: 291 K----LKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLK-KEFMVDEFITHNL 345
A H + L + L GS+ + + K ++ +++ +T
Sbjct: 276 SDWAFEVDAGAFHREMVLHNKALVGSVNSH---VEHFEAATVTFTKLPKWFLEDLVTGVH 332
Query: 346 LFEDINQAF 354
+ AF
Sbjct: 333 PLSEFEAAF 341
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-33
Identities = 78/403 (19%), Positives = 135/403 (33%), Gaps = 64/403 (15%)
Query: 14 KAAVAWGAGQPLVVEEVE----VNP--PQPEEIRIKVVCTSLCRSDITAWETQWPQ---- 63
K+ V G L VE V + + +KVV T++C SD + ++
Sbjct: 4 KSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPKGH 62
Query: 64 -----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 118
V G V + G+ V F C CR CK +S+ CE + +
Sbjct: 63 VLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADL- 121
Query: 119 SDQQTRFSIKGKPVYHYCAVS-SFSEYTVVH--SGCAVKV----SSIAPLEKICLLSCGL 171
G + S +EY +V +K ++ ++ + L+S L
Sbjct: 122 ----------GAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDIL 171
Query: 172 SAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231
G + A + GS V I G G VG A GA+ GA+ +I D NPE+ + G
Sbjct: 172 PTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG 230
Query: 232 VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG--------------DTGMITTALQS 276
++ + + P++ I +I D + +G G + +
Sbjct: 231 FET-IDLRN-SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDV 288
Query: 277 CCDGWGLAVTLGV-----PKLKPEVAAHYGLFLSGRTL--KG-SLFGGWKP-KTDLPSLV 327
G + + G+ P + A L L + K + G P L
Sbjct: 289 VRAGGAIGIP-GIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHLT 347
Query: 328 NRYLKKE--FMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIH 368
L + ++ + + + +G + VI
Sbjct: 348 EAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSPAKFVID 390
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 4e-30
Identities = 75/408 (18%), Positives = 138/408 (33%), Gaps = 74/408 (18%)
Query: 14 KAAVAWGAGQPLVVEEVE----VNP---PQPEEIRIKVVCTSLCRSDITAWETQWPQ--- 63
+ V G+G+ + V++++ +P + +KVV T++C SD +
Sbjct: 4 RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 62
Query: 64 ------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 117
V G V G+ V F C CR CK + C + R G
Sbjct: 63 LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGA 122
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFS----EYTVV---HSGCAVKV----SSIAPLEKICL 166
Y Y + ++ EY +V +K+ ++ + +
Sbjct: 123 ---------------YGYVDMGDWTGGQAEYVLVPYADFNL-LKLPDRDKAMEKIRDLTC 166
Query: 167 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226
LS L G A A + GSTV + G G VGL+ A A+ GA+ +I D NP +
Sbjct: 167 LSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAH 225
Query: 227 AKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG---------------DTGMI 270
AKA G D P+ + I + D + + +G ++
Sbjct: 226 AKAQGFEIADLSLD--TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVL 283
Query: 271 TTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLK-GSLF-------GGWKP-KT 321
+ +Q + + G+ + A + +++ G + G P
Sbjct: 284 NSLMQVTRVAGKIGIP-GLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMK 342
Query: 322 DLPSLVNRYLKKEF-MVDEFITHNLLFEDINQAFNLMKEGKCLRSVIH 368
+L+ + + + + +D + + G + VI
Sbjct: 343 YNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPKKFVID 390
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 79/362 (21%), Positives = 123/362 (33%), Gaps = 74/362 (20%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGP 73
L + E V +I ++ + SL D ET +VE+VG
Sbjct: 41 LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGK 100
Query: 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY 133
VT F G+ V++ F + + ++ E LG GV
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGV----------------- 143
Query: 134 HYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN----VADISKGST 189
SEY V+ G V + L C AGL AW + G
Sbjct: 144 -------LSEYVVLPEGWFVAAPKSLDAAEASTLPC---AGL-TAWFALVEKGHLRAGDR 192
Query: 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVI 249
VV+ G G V L Q AKA GA +I ++ EK ++A A G +N + E + +
Sbjct: 193 VVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLE--EDWVERV 249
Query: 250 KRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK-LKPEVAAHYGLFLSGR 307
+T GAD+ E G + +L++ G +GV + + L L
Sbjct: 250 YALTGDRGADHILEIAG-GAGLGQSLKAVAPD-GRISVIGVLEGFEVSGPVGP-LLLKSP 306
Query: 308 TLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLL---------FEDINQAFNLMK 358
++G G + L LV + L F ++ +A +
Sbjct: 307 VVQGISVG---HRRALEDLV-----------GAVDRLGLKPVIDMRYKFTEVPEALAHLD 352
Query: 359 EG 360
G
Sbjct: 353 RG 354
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-24
Identities = 75/381 (19%), Positives = 133/381 (34%), Gaps = 82/381 (21%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-------- 63
+A V G P L V ++ V P P+E+R+++ +L D+ +
Sbjct: 2 RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61
Query: 64 ---CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE---VLGLERRGVM 117
+V++VGPGV F G+ V+ C C +C + + N C +LG R G
Sbjct: 62 GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGT- 120
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
++EY V+ E+ + L
Sbjct: 121 -----------------------YAEYVVLPEANLAPKPKNLSFEEAAAIPL---TFL-T 153
Query: 178 AWN----VADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232
AW + G V++ V ++ Q AK GA R+I + +K +AKA G
Sbjct: 154 AWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGA 212
Query: 233 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG-DTGMITTALQSCCDGWGLAVTLGVP 290
E +N + ++R+T G GAD + G +++ +G G G
Sbjct: 213 DETVNYTH--PDWPKEVRRLTGGKGADKVVDHTGALY--FEGVIKATANG-GRIAIAGAS 267
Query: 291 K-LKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLL--- 346
+ + + +F ++ GS K+ L ++ F+ L
Sbjct: 268 SGYEGTLPFAH-VFYRQLSILGSTMA---SKSRLFPIL-----------RFVEEGKLKPV 312
Query: 347 ------FEDINQAFNLMKEGK 361
E + L++E +
Sbjct: 313 VGQVLPLEAAAEGHRLLEERR 333
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 9e-23
Identities = 68/413 (16%), Positives = 118/413 (28%), Gaps = 95/413 (23%)
Query: 7 QPQVITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDI--------- 54
A + P + +++V V P E + V+ +S+ + +
Sbjct: 37 HKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLS 96
Query: 55 -----------TAWETQWPQCCRI--------VESVGPGVTEFNEGEHVLTVFIGECKTC 95
+ + + V GPGV + G+ V+ +
Sbjct: 97 TFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELES 156
Query: 96 RQCKSDKSNTCE--VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV 153
+D E + G E G +E +V S +
Sbjct: 157 SDGHNDTMLDPEQRIWGFETNF-------------G----------GLAEIALVKSNQLM 193
Query: 154 KVSSIAPLEKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGL-GTVGLSVAQGAK 207
E+ A + N A + +G V+I+G G +G Q A
Sbjct: 194 PKPDHLSWEEAAAPGL---VNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFAL 250
Query: 208 ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQ---------------QVIKRI 252
A GA I V ++P+K E +A G ++ N + I+ +
Sbjct: 251 AGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIREL 309
Query: 253 TDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK-LKPEVAAHYGLFLSGRTLK 310
T G D FE G ++ G G T E Y L++S + +
Sbjct: 310 TGGEDIDIVFEHPGR-ETFGASVFVTRKG-GTITTCASTSGYMHEYDNRY-LWMSLKRII 366
Query: 311 GSLFGGWKPKTDLPSLVNRYLKKEF--MVDEFITHNLLFEDINQAFNLMKEGK 361
GS F + K + + + ED QA +
Sbjct: 367 GSHFA---NYREAWEANRLIAKGRIHPTLSKVYS----LEDTGQAAYDVHRNL 412
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 4e-21
Identities = 84/396 (21%), Positives = 145/396 (36%), Gaps = 88/396 (22%)
Query: 2 STSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW 61
STS+ + + KA A+ A QPL ++ P P +++I++ +C SD+ ++W
Sbjct: 12 STSLYKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEW 71
Query: 62 -----PQCCR-----IVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLG 110
P V +VG V ++ G+ V + + CK C +C+ N C+
Sbjct: 72 AGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCD--- 128
Query: 111 LERRGVMHSDQQTRFSIKGKPVYHYCAVSS---------FSEYTVVHSGCAVKV-SSIAP 160
Y + + +S+ VVH +++
Sbjct: 129 -------------------HMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQ 169
Query: 161 LEKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRII 215
L + L C AG+ W G V + G+G +G + A A GA ++
Sbjct: 170 LAAVAPLLC---AGITTYSPLRHWQA---GPGKKVGVVGIGGLGHMGIKLAHAMGA-HVV 222
Query: 216 GVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT---GMITT 272
T+ K E AKA G E +N + +E + SF+ I +T
Sbjct: 223 AFTTSEAKREAAKALGADEVVNSRNADE-----MAAHLK-----SFDFILNTVAAPHNLD 272
Query: 273 ALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLK 332
+ G +G P + + L + R + GS+ GG P+T
Sbjct: 273 DFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG-IPET----------- 320
Query: 333 KEFMVDEFITHNLL-------FEDINQAFNLMKEGK 361
+E M+D H ++ + IN+A+ M G
Sbjct: 321 QE-MLDFCAEHGIVADIEMIRADQINEAYERMLRGD 355
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 6e-21
Identities = 51/409 (12%), Positives = 109/409 (26%), Gaps = 86/409 (21%)
Query: 5 IKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI---------- 54
++ K + L + EV + P+E+ + V+ +S+ + +
Sbjct: 30 LRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPT 89
Query: 55 ------TAWETQWPQ------------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCR 96
A + W C +V G GV + G+HV+ V
Sbjct: 90 FHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQE 148
Query: 97 QCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156
G +EY VV + +
Sbjct: 149 PATHGDGMLGT----------------EQRAWGFETNFG----GLAEYGVVRASQLLPKP 188
Query: 157 SIAPLEKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARG 210
+ E+ + A + A + +G V+I+G G +G Q K G
Sbjct: 189 AHLTWEEAAVSPL---CAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGG 245
Query: 211 ASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN----------------EPVQQVIKRITD 254
+ V ++ +K +A G +N + + +++
Sbjct: 246 G-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAG 304
Query: 255 GGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLF 314
D FE G ++ G + Y L++ + + GS
Sbjct: 305 REPDIVFEHTGR-VTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRY-LWMKLKKIVGSHG 362
Query: 315 GGWKPKTDLPSLVNRYLKKEF--MVDEFITHNLLFEDINQAFNLMKEGK 361
+ + + + + +A +++ +
Sbjct: 363 A---NHEEQQATNRLFESGAVVPAMSAVYP----LAEAAEACRVVQTSR 404
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 4e-20
Identities = 81/398 (20%), Positives = 137/398 (34%), Gaps = 91/398 (22%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA--- 56
MS S ++ + A L E++R KV+ +C SD+ +
Sbjct: 5 MSKSPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKND 64
Query: 57 W-ETQWPQC-----CRIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVL 109
W + +P V VG V + N G+ V + +G C +C C +D N C
Sbjct: 65 WGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCP-- 122
Query: 110 GLERRGVMHSDQQTRFSIKGKPVYHYCAVSS--------FSEYTVVHSGCAVKVSSIAPL 161
K + Y ++ +S + V + ++ PL
Sbjct: 123 --------------------KMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPL 162
Query: 162 EKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIG 216
+ L C AG+ + + G + I GLG +G + AKA G+ ++
Sbjct: 163 DGGAPLLC---AGITVYSPLKYFGLD--EPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTV 216
Query: 217 VDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT---GMITT 272
+ T+P K E+A K FG FL D + ++ + + I DT
Sbjct: 217 ISTSPSKKEEALKNFGADSFLVSRDQEQ-----MQAAAG-----TLDGIIDTVSAVHPLL 266
Query: 273 ALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLK 332
L G + +G P+ E+ A + L + + GS GG
Sbjct: 267 PLFGLLKSHGKLILVGAPEKPLELPA-FSLIAGRKIVAGSGIGG---------------M 310
Query: 333 KEF--MVDEFITHNLL-------FEDINQAFNLMKEGK 361
KE M+D HN+ + +N A + +
Sbjct: 311 KETQEMIDFAAKHNITADIEVISTDYLNTAMERLAKND 348
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 8e-20
Identities = 57/384 (14%), Positives = 103/384 (26%), Gaps = 82/384 (21%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQWPQ-----CCR 66
A + V +++ ++V ++ SD +
Sbjct: 13 TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFATPWAFLGTDYAG 72
Query: 67 IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFS 126
V +VG VT G+ V ++ R
Sbjct: 73 TVVAVGSDVTHIQVGDRVYG------------------------------AQNEMCPRTP 102
Query: 127 IKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEK------------ICLLSCGLSAG 174
+G +FS+YTV K+ E+ + + GL
Sbjct: 103 DQG----------AFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLP 152
Query: 175 LGAAWNVADISKGSTVVIFGLGT-VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
+A SK V+++G T Q + G I +P + AK+ G
Sbjct: 153 SPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFDLAKSRGAE 210
Query: 234 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWG-LAVTLGVPKL 292
E + + Q I+ T Y+ +CI + T + G P+
Sbjct: 211 EVFDYRA--PNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEH 268
Query: 293 KPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLL------ 346
+ G T+ G P S R ++ +
Sbjct: 269 AATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLW--RIAGQLVEDGRLVH 326
Query: 347 ---------FEDINQAFNLMKEGK 361
F+ I Q L+++G+
Sbjct: 327 HPLRVVQGGFDHIKQGMELVRKGE 350
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 1e-19
Identities = 84/383 (21%), Positives = 133/383 (34%), Gaps = 83/383 (21%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA---W-ETQWPQCC 65
+ K + + + + P ++ I ++ +C SDI +A W E +P
Sbjct: 3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIP 62
Query: 66 R-----IVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
I++ VG GV +F G+ V + F+ CK C+ CK + C
Sbjct: 63 GHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCT------------ 110
Query: 120 DQQTRFSIKGKPVYHYCAVSS--FSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA 177
+ F+ +H +S VV + V APLEK+ L C AG+
Sbjct: 111 --KVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLC---AGITT 165
Query: 178 -----AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232
V +KG+ V + G G +G + A A GA + N K + A + GV
Sbjct: 166 YSPLKFSKV---TKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGV 221
Query: 233 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT---GMITTALQSCCDGWGLAVTLGV 289
F + I T G +G+
Sbjct: 222 KHFY---------------TDPKQCKEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGL 266
Query: 290 PK--LKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEF--MVDEFITHNL 345
P + P ++ + L R + GSL GG KE MVD I HN+
Sbjct: 267 PPVEVAPVLSVFDFIHLGNRKVYGSLIGG---------------IKETQEMVDFSIKHNI 311
Query: 346 L-------FEDINQAFNLMKEGK 361
+DI+ A++ + GK
Sbjct: 312 YPEIDLILGKDIDTAYHNLTHGK 334
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 8e-19
Identities = 73/385 (18%), Positives = 131/385 (34%), Gaps = 87/385 (22%)
Query: 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA---W-ETQWPQCCR 66
A L + PE++ I+++C +C +D+ + +P
Sbjct: 9 KTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPG 68
Query: 67 -----IVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
V VG V++F G+ V + +G C C C+ D C
Sbjct: 69 HEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCP------------- 115
Query: 121 QQTRFSIKGKPVYHYCAVSS--------FSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS 172
K ++ Y V F++ TVVH VK+ +E+ L C
Sbjct: 116 ---------KKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLC--- 163
Query: 173 AGLGA-----AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227
AG+ + + G I GLG VG + AKA G + + ++ +K E+A
Sbjct: 164 AGVTVYSPLSHFGLK--QPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEA 220
Query: 228 -KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT---GMITTALQSCCDGWGL 283
+ G +++ +D + + + D S + + DT S G
Sbjct: 221 LQDLGADDYVIGSDQAK-----MSELAD-----SLDYVIDTVPVHHALEPYLSLLKLDGK 270
Query: 284 AVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITH 343
+ +GV + L L + + GS G +T +E M++
Sbjct: 271 LILMGVINNPLQFLT-PLLMLGRKVITGSFIGS-MKET-----------EE-MLEFCKEK 316
Query: 344 NLL-------FEDINQAFNLMKEGK 361
L + +N AF +++
Sbjct: 317 GLSSIIEVVKMDYVNTAFERLEKND 341
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 4e-18
Identities = 61/379 (16%), Positives = 109/379 (28%), Gaps = 89/379 (23%)
Query: 14 KAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ------- 63
+A V G P + ++ +E+ + ++R+K++ + SDI + +
Sbjct: 28 RALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAV 87
Query: 64 ----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
V +VG VT G+ V+ G LG
Sbjct: 88 GGNEGVAQVVAVGSNVTGLKPGDWVIPANAG------------------LG--------- 120
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
++ V ++V S PL+ + L A+
Sbjct: 121 --------------------TWRTEAVFSEEALIQVPSDIPLQS----AATLGVNPCTAY 156
Query: 180 N----VADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEK----AKAF 230
+ G +V+ VG +V Q A A G R I V + +K K+
Sbjct: 157 RMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSL 215
Query: 231 GVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289
G + + ++ D + C+G G +T L G VT G
Sbjct: 216 GAEHVITEEE--LRRPEMKNFFKDMPQPRLALNCVG--GKSSTELLRQLARGGTMVTYGG 271
Query: 290 P-KLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEF-MVDE-----FIT 342
K + +F L+G WK P + ++
Sbjct: 272 MAKQPVVASVSLLIF-KDLKLRGFWLSQWKKDHS-PDQFKELILTLCDLIRRGQLTAPAC 329
Query: 343 HNLLFEDINQAFNLMKEGK 361
+ +D A +
Sbjct: 330 SQVPLQDYQSALEASMKPF 348
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 58/356 (16%), Positives = 101/356 (28%), Gaps = 100/356 (28%)
Query: 10 VITCKAAVAWGAGQP---LVVEEVEVNPPQPE--EIRIKVVCTSLCRSDI---------- 54
+IT +A + G+P L + E++ E+ +K + + + SDI
Sbjct: 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60
Query: 55 ----TAWETQWPQ------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSN 104
T + T P V VG V+ G+ V+ +
Sbjct: 61 PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFG------------ 108
Query: 105 TCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKI 164
++ + + + +K+ + A +
Sbjct: 109 -----------------------------------TWRTHALGNDDDFIKLPNPAQSKAN 133
Query: 165 CLLSCGLSAGLGAAWNV------------ADISKGSTVVIF--GLGTVGLSVAQGAKARG 210
+ GL+ GA +V ++ G I G VG +Q K
Sbjct: 134 GKPN-GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN 192
Query: 211 ASRIIGV----DTNPEKCEKAKAFGVTEFLNPNDNNEP-VQQVIKRITD---GGADYSFE 262
I V E K G T+ + + NN IK G A +
Sbjct: 193 F-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALN 251
Query: 263 CIGDTGMITTALQSCCDGWGLAVTLGVP-KLKPEVAAHYGLFLSGRTLKGSLFGGW 317
C+G G +T + + GL +T G + +F T G
Sbjct: 252 CVG--GKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIF-KNFTSAGFWVTEL 304
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 1e-16
Identities = 47/269 (17%), Positives = 88/269 (32%), Gaps = 69/269 (25%)
Query: 14 KAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT------AWETQWP-- 62
K G P L VE + P + E+ ++++ + SD+ A P
Sbjct: 6 KLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNI 65
Query: 63 ---QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
+ IVE+VG V+ G+ V L L G
Sbjct: 66 PGYEGVGIVENVGAFVSRELIGKRV------------------------LPLRGEG---- 97
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAA 178
++ EY + V + SI + L+A
Sbjct: 98 --------------------TWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTA-WVTC 136
Query: 179 WNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237
++ + +++ +G AQ ++ R+I V N + E+ G ++
Sbjct: 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVID 195
Query: 238 PNDNNEPVQQVIKRITDG-GADYSFECIG 265
+ P+ + + +T+G GAD + + IG
Sbjct: 196 TST--APLYETVMELTNGIGADAAIDSIG 222
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 61/348 (17%), Positives = 105/348 (30%), Gaps = 77/348 (22%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDI-TA--- 56
MS P+ A + + + + P +I IK+ +C SDI A
Sbjct: 1 MSY----PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGH 56
Query: 57 W-ETQWPQCC------RIVESVGPGV-TEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCE 107
W + P ++V+ +GP + G+ V + + C C +CK+D C
Sbjct: 57 WGNMKMPLVVGHEIVGKVVK-LGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCT 115
Query: 108 VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSS--------FSEYTVVHSGCAVKVSSIA 159
K V Y ++ Y VH V +
Sbjct: 116 ----------------------KFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENI 153
Query: 160 PLEKICLLSCGLSAGLGA-----AWNVADISKGSTVVIFGLGTVG-LSVAQGAKARGASR 213
P L C GL G V I GLG +G + +KA GA
Sbjct: 154 PSHLAAPLLC---GGLTVYSPLVRNGC---GPGKKVGIVGLGGIGSMGT-LISKAMGA-E 205
Query: 214 IIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT-----G 268
+ + K E A G ++ + + + +F+ I
Sbjct: 206 TYVISRSSRKREDAMKMGADHYIATLEEGDWGE---------KYFDTFDLIVVCASSLTD 256
Query: 269 MITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGG 316
+ + G V++ +P+ ++ L ++ S G
Sbjct: 257 IDFNIMPKAMKVGGRIVSISIPEQHEMLSL-KPYGLKAVSISYSALGS 303
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 9e-16
Identities = 71/335 (21%), Positives = 114/335 (34%), Gaps = 88/335 (26%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSL------CRS 52
M +I + K + G + E+ V EE+ IK T + R
Sbjct: 1 MKCTIPE----QQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRK 56
Query: 53 DITAWETQWPQC-----CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCE 107
I E P V + G GVT F G+ V
Sbjct: 57 GIYPCEK--PYVLGREASGTVVAKGKGVTNFEVGDQVA---------------------- 92
Query: 108 VLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS-GCAVKVSSIAPLEKICL 166
Y + S+F++Y+ + S G +K+ E++ L
Sbjct: 93 ---------------------------YISNSTFAQYSKISSQGPVMKLPKGTSDEELKL 125
Query: 167 LSCGLSAGLGA---AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE 222
+ GL L A + KG V++F G VGL + Q K +GA I V + E
Sbjct: 126 YAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDE 184
Query: 223 KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQS--CCD 279
K + AK +G +N + + + + + + T+G G D SF+ +G T S
Sbjct: 185 KLKIAKEYGAEYLINASKED--ILRQVLKFTNGKGVDASFDSVGK----DTFEISLAALK 238
Query: 280 GWGLAVTLG-----VPKLKPEVAAHYGLFLSGRTL 309
G+ V+ G +P + + L L
Sbjct: 239 RKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQL 273
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-15
Identities = 61/275 (22%), Positives = 99/275 (36%), Gaps = 72/275 (26%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDI--------TAWETQWP- 62
AAV G P V EEV+V P P ++R++ + D + P
Sbjct: 3 MAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPI 62
Query: 63 ----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 118
+ +VE VGPGVT+F GE V
Sbjct: 63 VVGFEAAAVVEEVGPGVTDFTVGERV---------------------------------- 88
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 178
+ ++S+ + + +KV L+ + L L G+ A
Sbjct: 89 -------------CTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLK-GMTAQ 134
Query: 179 WNVAD---ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234
+ + + G V+I G +G + A+ GA +IG + EK E A+ G
Sbjct: 135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHH 193
Query: 235 FLNPNDNNEPVQQVIKRITDG-GADYSFECIG-DT 267
+N + + +V++ IT G G D ++ IG DT
Sbjct: 194 TINYSTQD--FAEVVREITGGKGVDVVYDSIGKDT 226
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 3e-15
Identities = 41/312 (13%), Positives = 81/312 (25%), Gaps = 74/312 (23%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGP 73
L + V P P ++ IKV S+ SD+ + Q+ Q + + G
Sbjct: 37 LEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGD 96
Query: 74 GV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPV 132
+ G+ V GL G
Sbjct: 97 EPYAKSLVGKRV---------------------AFATGLSNWG----------------- 118
Query: 133 YHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNV---ADISKGS 188
S++EY V + + + ++ + ++ L+A +
Sbjct: 119 -------SWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTA-----IAMFDIVKQEGEK 166
Query: 189 TVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQ 247
V+ + + AK G R I E+ K G LN +
Sbjct: 167 AFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKA--PDFEA 223
Query: 248 VIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG-LFLS 305
++ + + + + + + + G V G L
Sbjct: 224 TLREVMKAEQPRIFLDAVTGP-LASAIFNAMPKR-ARWIIYGRLDPDATVIREPGQLIFQ 281
Query: 306 GRTLKGSLFGGW 317
+ ++G W
Sbjct: 282 HKHIEGFWLSEW 293
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 6e-15
Identities = 59/320 (18%), Positives = 99/320 (30%), Gaps = 80/320 (25%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQWPQC- 64
G P L E P EI+++ + RS + + P
Sbjct: 3 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSL-PSGL 61
Query: 65 ----CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
IV VG GV G+ V
Sbjct: 62 GTEAAGIVSKVGSGVKHIKAGDRV------------------------------------ 85
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAW 179
VY A+ ++S + + A + ++I+ + GL+
Sbjct: 86 -----------VYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTV-YYLLR 133
Query: 180 NVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
+I + G VGL Q AKA GA ++IG +K + A G + +
Sbjct: 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVI-- 190
Query: 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQS--CCDGWGLAVTLG-----VP 290
N E + + +K IT G ++ +G T +S C GL V+ G V
Sbjct: 191 NYREEDLVERLKEITGGKKVRVVYDSVGR----DTWERSLDCLQRRGLMVSFGNSSGAVT 246
Query: 291 KLKPEV-AAHYGLFLSGRTL 309
+ + L+++ +L
Sbjct: 247 GVNLGILNQKGSLYVTRPSL 266
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 58/271 (21%), Positives = 94/271 (34%), Gaps = 69/271 (25%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSL------CRSDITAWETQWPQC- 64
K G P L + E P P+ + ++ L RS + P
Sbjct: 3 KRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFL-PSGL 61
Query: 65 ----CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
+VE+VG VT F G+ V
Sbjct: 62 GAEGAGVVEAVGDEVTRFKVGDRV------------------------------------ 85
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAW 179
Y + ++SE V+ VK+ S++ + L+ GL+
Sbjct: 86 -----------AYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTV-QYLLR 133
Query: 180 NVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238
+ G ++ G VG Q AKA GA ++IG ++PEK AKA G E +
Sbjct: 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETI-- 190
Query: 239 NDNNEPVQQVIKRITDG-GADYSFECIG-DT 267
+ ++E V + + +TDG ++ +G DT
Sbjct: 191 DYSHEDVAKRVLELTDGKKCPVVYDGVGQDT 221
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 56/394 (14%), Positives = 104/394 (26%), Gaps = 111/394 (28%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-------- 63
+A V G G L + + PQ E++I+V L D+ +
Sbjct: 5 RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVP 64
Query: 64 ---CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
C IVE++G V + G+ V+
Sbjct: 65 GFECSGIVEALGDSVKGYEIGD------------------------RVMAFVNYN----- 95
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA-- 178
+++E K+ +S AA
Sbjct: 96 -------------------AWAEVVCTPVEFVYKIPD------------DMSFSEAAAFP 124
Query: 179 ------WN----VADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227
+ VA++ +G +V++ G VG +VAQ + G + K E
Sbjct: 125 MNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTAS-TFKHEAI 183
Query: 228 KAFGVTEFLNPNDNNEPVQQVIKRITDGGAD---------Y---SFECIGDTG-MITTAL 274
K + D N Q +KRI+ G D + G I
Sbjct: 184 KDSVT----HLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGS 239
Query: 275 QSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGR-TLKGSLFGGWKPKTDLPSLVNRYLKK 333
+ G + + + G K L+ ++K
Sbjct: 240 SNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEK 299
Query: 334 EF-MVDE-----FITHNLLFEDINQAFNLMKEGK 361
+ ++ + E++ +A + +
Sbjct: 300 LIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRG 333
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 5e-14
Identities = 53/366 (14%), Positives = 112/366 (30%), Gaps = 52/366 (14%)
Query: 25 LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVESVGPGVTEFNEGEHV 84
L ++ ++ P P+E+ I++ + L SD+ ++ T G
Sbjct: 20 LSLDSIDTPHPGPDEVLIRIEASPLNPSDLG-----------LLFGAADMSTAKASGTAE 68
Query: 85 LTVFIGEC-KTCRQCKSDKSNTCEVLGLERRGVMHS--DQQTRFSIKGKPVYHYCAVSSF 141
+ + + + + + +G E GV+ ++ GK V + +
Sbjct: 69 RPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVA-AIGGAMY 127
Query: 142 SEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNVADISK---GSTVVIFGL-G 196
S+Y + + + + P + L+A + + + S +V
Sbjct: 128 SQYRCIPADQCLVLPEGATPADGASSFVNPLTA-----LGMVETMRLEGHSALVHTAAAS 182
Query: 197 TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG- 255
+G + Q G +++ + E+ + KA G N Q +
Sbjct: 183 NLGQMLNQICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS--PTFMQDLTEALVST 239
Query: 256 GADYSFECIGD---TGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG----------- 301
GA +F+ G G I T +++ + + +V YG
Sbjct: 240 GATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYL-YGGLDTSPTEFNR 298
Query: 302 LFLSGRTLKGSLFGGWKPKTD------LPSLVNRYLKKEFMVDEFITHNLLFEDINQAFN 355
F + G L + K L V LK F + + ++
Sbjct: 299 NFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKTTFASH--YSKEISLAEVLDLDM 356
Query: 356 LMKEGK 361
+ K
Sbjct: 357 IAVYNK 362
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 5e-13
Identities = 64/373 (17%), Positives = 108/373 (28%), Gaps = 87/373 (23%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQWPQ------ 63
KA A P LV +VE P + + V +C D +T E Q
Sbjct: 23 KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVP 82
Query: 64 ---CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
+V S G + G+ V+ G
Sbjct: 83 GIETAGVVRSAPEG-SGIKPGD------------------------RVMAFNFIG----- 112
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW- 179
++E V + + + L A +
Sbjct: 113 -------------------GYAERVAVAPSNILPTPPQLDDAE----AVALIANYHTMYF 149
Query: 180 ---NVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235
+ G TV++ G G +G + Q AK GA ++I V E K+ G
Sbjct: 150 AYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIV 208
Query: 236 LNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK-LK 293
L E + ++ T G G D + IG A+++ G + +G
Sbjct: 209 LP---LEEGWAKAVREATGGAGVDMVVDPIGGP-AFDDAVRTLASE-GRLLVVGFAAGGI 263
Query: 294 PEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEF-MVDE----FITHNLLFE 348
P + + L L +L G +G + + +V E ++ +
Sbjct: 264 PTIKVNR-LLLRNASLIGVAWGEFLRTH--ADYLYETQAGLEKLVAEGMRPPVSARIPLS 320
Query: 349 DINQAFNLMKEGK 361
+ QA +GK
Sbjct: 321 EGRQALQDFADGK 333
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 62/384 (16%), Positives = 118/384 (30%), Gaps = 93/384 (24%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ 60
+ +++ + + + V P ++ ++ + SDI +
Sbjct: 20 FQSMMQK---LVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGR 76
Query: 61 WPQ-----------CCRIVESVGPGVTE-FNEGEHVLTVFIGECKTCRQCKSDKSNTCEV 108
+ V ++G + + G+ V + G
Sbjct: 77 YDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMAPG------------------ 118
Query: 109 LGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLS 168
SF+EYTVV + A V S+ P E + LL
Sbjct: 119 -------------------------------SFAEYTVVPASIATPVPSVKP-EYLTLLV 146
Query: 169 CGLSA--GLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225
G +A L + +S+G V++ G G Q +K +IG ++ EK
Sbjct: 147 SGTTAYISLK---ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSA 202
Query: 226 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAV 285
K+ G + N EPV V+K+ G D +E +G M A+ + G +
Sbjct: 203 FLKSLGCDRPI--NYKTEPVGTVLKQEYPEGVDVVYESVGGA-MFDLAVDALATK-GRLI 258
Query: 286 TLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNL 345
+G F+SG L L + F ++ +++
Sbjct: 259 VIG--------------FISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQ 304
Query: 346 LFEDINQAFNLMKEGKCLRSVIHM 369
++ + G L + +
Sbjct: 305 --AAMSHLLEMCVSGD-LVCEVDL 325
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 5e-12
Identities = 56/359 (15%), Positives = 100/359 (27%), Gaps = 78/359 (21%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVESVGP 73
KA V G PL + ++ + E+ ++V L +D
Sbjct: 2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHL-------MR--------- 45
Query: 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY 133
G + + + G+E GV ++G+
Sbjct: 46 ------LGAY-------------LTRLHPP---FIPGMEVVGV----------VEGRRYA 73
Query: 134 HYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV---ADISKGSTV 190
+E V G + + E+ + A+ A G V
Sbjct: 74 ALVPQGGLAERVAVPKGALLPLPEGLSPEE----AAAFPVSFLTAYLALKRAQARPGEKV 129
Query: 191 VIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVI 249
++ G +G + Q A+A G R++ + PEK A G E + V
Sbjct: 130 LVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAE-------VP 181
Query: 250 KRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK-LKPEVAAHYGLFLSGR 307
+R G D E G + +L G G V +G + + L
Sbjct: 182 ERAKAWGGLDLVLEVRGKE--VEESLGLLAHG-GRLVYIGAAEGEVAPIPPLR-LMRRNL 237
Query: 308 TLKGSLFGGWKPKTDLPSLVNRYLKKEF-----MVDEFITHNLLFEDINQAFNLMKEGK 361
+ G + +LV L + + F + AF + +
Sbjct: 238 AVLGFWLTPLLRE---GALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRG 293
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 47/310 (15%), Positives = 85/310 (27%), Gaps = 107/310 (34%)
Query: 1 MSTSIKQPQVITCKAAVAWGAGQP--LVVE-EVEVNPPQPEEIRIKVVCTSLCRSDITAW 57
M+T K + + G P L + ++ V P+ ++ IKV + +
Sbjct: 23 MATGQKLMRAVRVFEF-----GGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIR 77
Query: 58 ETQWPQ-----------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTC 106
+ + ++E+VG + F +G+ V T
Sbjct: 78 SGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFT-------------------- 117
Query: 107 EVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL 166
G ++EY + K+
Sbjct: 118 ---SSTISG------------------------GYAEYALAADHTVYKLPE--------- 141
Query: 167 LSCGLSAGLGAA--------W-NV---ADISKGSTVVIFG-LGTVGLSVAQGAKARGASR 213
L GAA + + A + G +V++ G G VGL+ Q A+A G +
Sbjct: 142 ---KLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-K 197
Query: 214 IIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG----------GADY---S 260
I+G E + G E N + IK+
Sbjct: 198 ILGTAGTEEGQKIVLQNGAHEVFNHRE--VNYIDKIKKYVGEKGIDIIIEMLANVNLSKD 255
Query: 261 FECIGDTGMI 270
+ G +
Sbjct: 256 LSLLSHGGRV 265
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 53/279 (18%), Positives = 91/279 (32%), Gaps = 91/279 (32%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP--------- 62
+ G P +V+ + + E+ ++ + R DI + +P
Sbjct: 30 RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89
Query: 63 --QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
+ + VGPGV+ + G+ +V GL G
Sbjct: 90 GLELSGEIVGVGPGVSGYAVGD------------------------KVCGLANGG----- 120
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA-- 178
+++EY ++ +G + G A AA
Sbjct: 121 -------------------AYAEYCLLPAGQILPFPK------------GYDAVKAAALP 149
Query: 179 ------WN----VADISKGSTVVIFGLGT--VGLSVAQGAKARGASRIIGVDTNPEKCEK 226
W +A +++G +V+I G GT +G + Q A+A GA + + KCE
Sbjct: 150 ETFFTVWANLFQMAGLTEGESVLIHG-GTSGIGTTAIQLARAFGA-EVYATAGSTGKCEA 207
Query: 227 AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265
+ G +N E VIK T G D + IG
Sbjct: 208 CERLGAKRGINYRS--EDFAAVIKAETGQGVDIILDMIG 244
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 54/275 (19%), Positives = 88/275 (32%), Gaps = 81/275 (29%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVESV 71
A G P L V+EV P E+ +KV ++L R+D+ + Q+
Sbjct: 24 LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYD--------P 75
Query: 72 GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV---MHSDQQTRFSIK 128
PG + +LGLE G + Q + I
Sbjct: 76 PPGASN------------------------------ILGLEASGHVAELGPGCQGHWKI- 104
Query: 129 GKPVYHYCAVSS---FSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA------- 178
G A+ ++Y V G + + GL+ AA
Sbjct: 105 GDTA---MALLPGGGQAQYVTVPEGLLMPIPE------------GLTLTQAAAIPEAWLT 149
Query: 179 -WN----VADISKGSTVVIFGLGT--VGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231
+ V ++ G V+I G VG + Q + GA + + +K + A+ G
Sbjct: 150 AFQLLHLVGNVQAGDYVLIHA-GLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLG 207
Query: 232 VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265
N E + + T G G + +CIG
Sbjct: 208 AAAGFNYKK--EDFSEATLKFTKGAGVNLILDCIG 240
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 53/308 (17%), Positives = 91/308 (29%), Gaps = 86/308 (27%)
Query: 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDI----------TAWETQW 61
KA G P L + + + ++ IKV SL D +
Sbjct: 8 KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67
Query: 62 PQ-----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV 116
P V +G V N G+ +V+G+
Sbjct: 68 PSGLGYDFSGEVIELGSDVNNVNIGD------------------------KVMGI----- 98
Query: 117 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAGL 175
F ++EY K+ ++ L+ + L
Sbjct: 99 ------AGFPDHP---------CCYAEYVCASPDTIIQKLEKLSFLQ-----AASLPTAG 138
Query: 176 GAAWNV---ADISKGSTVVIFG-LGTVGLSVA-QGAKARGASRIIGVDTNPEKCEKAKAF 230
A A++ +G V+I G VG +A Q AK +G +I + KA
Sbjct: 139 LTALQALNQAEVKQGDVVLIHAGAGGVG-HLAIQLAKQKGT-TVITT-ASKRNHAFLKAL 195
Query: 231 GVTEFLNPNDNNEPVQQVIKRITD------GGA--DYSFECIGDTG-MITTALQSCCDGW 281
G + +N ++ E I D GG S +C+ +TG +++ +
Sbjct: 196 GAEQCINYHE--EDFLLAISTPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAGRVI 253
Query: 282 GLAVTLGV 289
+A
Sbjct: 254 EVAKQKHR 261
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 45/384 (11%), Positives = 97/384 (25%), Gaps = 116/384 (30%)
Query: 14 KAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSL-------CRSDITAWETQWPQ 63
+ W + + V++ ++I ++ + +++ W
Sbjct: 3 EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSN--GH 60
Query: 64 -----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEV---LGLERRG 115
++ VG V G V L+R G
Sbjct: 61 VPGVDGAGVIVKVGAKVDSKMLGR------------------------RVAYHTSLKRHG 96
Query: 116 VMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSI-------APLEKICLL 167
SF+E+TV+++ + + ++ P
Sbjct: 97 ------------------------SFAEFTVLNTDRVMTLPDNLSFERAAALPC------ 126
Query: 168 SCGLSAGLGAAW---NVADISKGSTVVIFGLGTVGLSVA-QGAKARGASRIIGVDTNPEK 223
L AW ++K V+I G G V ++ Q G + V +
Sbjct: 127 -----PLL-TAWQAFEKIPLTKQREVLIVGFGAVN-NLLTQMLNNAGY-VVDLV-SASLS 177
Query: 224 CEKAKAFGVTEFLN-PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWG 282
A GV P+ + + + A + G I C
Sbjct: 178 QALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQNAAALVPSLKANGHII-----CIQDRI 232
Query: 283 LAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDE--- 339
+ +++ + L G +L+ ++ +
Sbjct: 233 ---PAPIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLT-------LIAQGKM 282
Query: 340 --FITHNLLFEDINQAFNLMKEGK 361
FE + +A + ++ K
Sbjct: 283 EIAAPDIFRFEQMIEALDHSEQTK 306
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 57/280 (20%), Positives = 87/280 (31%), Gaps = 91/280 (32%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSD--ITAWETQWPQ-------- 63
AAV A P V+ ++ P P ++ +++ + D I A E Q
Sbjct: 9 IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILG 68
Query: 64 --CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
V +VGP V F G+ V GL
Sbjct: 69 MDLAGTVVAVGPEVDSFRVGD------------------------AVFGLTGGV------ 98
Query: 122 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLS----AGL-- 175
++G + +++ V + P L+ + L
Sbjct: 99 ---GGLQG----------THAQFAAVDARLLASK----PA--------ALTMRQASVLPL 133
Query: 176 --GAAW----NVADISKGSTVVIFGLGT--VGLSVA-QGAKARGASRIIGVDTNPEKCEK 226
AW + A + G TV+I G G VG VA Q A ARGA R+ E
Sbjct: 134 VFITAWEGLVDRAQVQDGQTVLIQG-GGGGVG-HVAIQIALARGA-RVFAT-ARGSDLEY 189
Query: 227 AKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265
+ G T D + + T G G D ++ +G
Sbjct: 190 VRDLGATPI----DASREPEDYAAEHTAGQGFDLVYDTLG 225
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Length = 290 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 189 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 232
T+ I GLG +G S+A G K +I+G + + + A G+
Sbjct: 8 TIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI 52
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 4e-06
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
G+ V + GLG VG+SVA+ A GA ++ + + G+
Sbjct: 155 GANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME 200
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Length = 279 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-06
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232
+ + GLG +G S+A + RG +IGV CEKA +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL 44
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Length = 183 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232
V+I G+G +G +AR +G++ E ++ ++ G
Sbjct: 42 VLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGR 84
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Length = 314 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-06
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 189 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 232
V+I G+G +G S A+ + G +I G D NPE KA G+
Sbjct: 35 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI 79
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 Length = 281 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 9e-06
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 189 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGV 232
V+I G+G +G S A+ + G +I G D NPE KA G+
Sbjct: 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI 47
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Length = 341 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232
V I GLG +G S+ + A + G + + + A G
Sbjct: 10 PVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGF 52
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 46/279 (16%), Positives = 84/279 (30%), Gaps = 76/279 (27%)
Query: 20 GAGQPLVVEEVEVNPPQPE--EIRIKVVCTSL------CRSDITAWETQWPQCCRI---- 67
+ ++E+ P P +I ++V S+ R T W ++
Sbjct: 33 PITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDW----KVIGYD 88
Query: 68 ----VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
V +VGP VT F G+ V + R G
Sbjct: 89 AAGIVSAVGPDVTLFRPGDEVFYA---------------------GSIIRPG-------- 119
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSGC-AVKVSSIAPLEKICLLSCGLSA--GLGAAWN 180
+ +E+ +V K ++ E L ++A +
Sbjct: 120 ----------------TNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLD 163
Query: 181 V--ADISKGSTV-VIFGLGTVGLSVA-QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236
V + ++ G G VG S+A Q A+ R +I + PE E K+ G +
Sbjct: 164 VNKPVPGAAPAILIVGGAGGVG-SIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVI 222
Query: 237 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQ 275
D+++P+ + + G + F
Sbjct: 223 ---DHSKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIAD 258
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 22/143 (15%)
Query: 143 EYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGA-------AW----NVADISKGSTVV 191
+ + K+ + P + LS LG A+ V + G TV+
Sbjct: 97 THFISDGKGLEKLLTEWPDK------LPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVL 150
Query: 192 IFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIK 250
+ G VG V Q AK +G +++G + EK K G N N +++ +K
Sbjct: 151 VSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTVN-SLEEALK 208
Query: 251 RITDGGADYSFECIGDTGMITTA 273
+ + G D F+ +G G
Sbjct: 209 KASPDGYDCYFDNVG--GEFLNT 229
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 6e-05
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243
T++ FG G +++ +G RIIG NP++ E +A G L P +
Sbjct: 7 TLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGEEPS 60
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-05
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231
K + GLG G S+ + G ++ VD N EK ++
Sbjct: 5 KNKQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASYA 49
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
G TV++ GLG VG S+A A GA +++ DT+ E+ A A G T
Sbjct: 174 DGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT 220
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 28/147 (19%)
Query: 143 EYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGA-------AW----NVADISKGS-- 188
++ KV + LS LGA + I+ GS
Sbjct: 111 TKVILDGNSLEKVDPQLVDGH--------LSYFLGAIGMPGLTSLIGIQEKGHITAGSNK 162
Query: 189 TVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQ 246
T+V+ G G G Q G SR++G+ EKC + G +N + V
Sbjct: 163 TMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK--DNVA 220
Query: 247 QVIKRITDGGADYSFECIGDTGMITTA 273
+ ++ G D F+ +G G I+
Sbjct: 221 EQLRESCPAGVDVYFDNVG--GNISDT 245
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231
++ G G+ + + A G +++ VD + EK E + G
Sbjct: 9 YIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEG 49
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 52/314 (16%), Positives = 91/314 (28%), Gaps = 91/314 (28%)
Query: 14 KAAVAWGAGQPLV---VEEVEV-NPPQPEEIRIKVVCTSL-------------------- 49
A V G+ V + + + P E+ +KV S+
Sbjct: 23 MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82
Query: 50 CRSDITAWETQWPQ-----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSN 104
+ ++P +V G V F G+ V
Sbjct: 83 DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAA----------------- 125
Query: 105 TCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC-AVKVSSIAPLEK 163
+ ++G + SE+ VV + K S+ +
Sbjct: 126 ----VPPWKQG------------------------TLSEFVVVSGNEVSHKPKSLTHTQA 157
Query: 164 ICLLSCGLSAGLGAAWNVADI----SKGSTVVIFG-LGTVGLSVA-QGAKARGASRIIGV 217
L L+A A V + G V+I G G VG + A Q KA A + V
Sbjct: 158 ASLPYVALTA-WSAINKVGGLNDKNCTGKRVLILGASGGVG-TFAIQVMKAWDA-HVTAV 214
Query: 218 DTNPEKCEKAKAFGVTEFLNPND-NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQS 276
+ + E + G + + D + V++ +K + D+ + +G +
Sbjct: 215 -CSQDASELVRKLGADDVI---DYKSGSVEEQLKSL--KPFDFILDNVGGSTETWAPDFL 268
Query: 277 CCDGWGLAVTLGVP 290
VTL P
Sbjct: 269 KKWSGATYVTLVTP 282
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233
+ + G G +G +A K + D + GV
Sbjct: 8 ICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVA 51
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235
GS V + GLG G+++A+ A GA + + + G+ F
Sbjct: 157 GSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLVPF 204
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 170 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229
G+ A A+ + +G V + GLG V ++ + GA +++ D N A A
Sbjct: 157 GMKAAAKEAFGSDSL-EGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVA 214
Query: 230 FGVTEFLNPND 240
+ + PN
Sbjct: 215 EEGADAVAPNA 225
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225
G ++I+G G +G S+A A A G +IGV+T +
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHPAD 174
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235
G T++I G G++G +A K G +++GV + + G +
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRERA-----GFDQV 182
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 100.0 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 100.0 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 100.0 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 100.0 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 100.0 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 100.0 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 100.0 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 100.0 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 100.0 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 100.0 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 100.0 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 100.0 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 100.0 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 100.0 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 100.0 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 100.0 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 100.0 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 100.0 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 100.0 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 100.0 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 100.0 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 100.0 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 100.0 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 100.0 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 100.0 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 100.0 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 100.0 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 100.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 100.0 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 100.0 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 100.0 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 100.0 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 100.0 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 100.0 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 100.0 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 100.0 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 100.0 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 100.0 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 100.0 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 100.0 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 100.0 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 100.0 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 100.0 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 100.0 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 100.0 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 100.0 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 100.0 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 100.0 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 100.0 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 100.0 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 100.0 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 100.0 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 100.0 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 100.0 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 100.0 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 100.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 100.0 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 100.0 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 100.0 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 100.0 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 100.0 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 100.0 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 100.0 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 100.0 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 100.0 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 100.0 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.97 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 99.88 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.25 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.72 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.68 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.61 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.49 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.48 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.45 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.42 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.29 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.17 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.07 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.06 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.04 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.01 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.96 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.95 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 97.95 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.83 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.81 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.77 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.74 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.71 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.69 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.67 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.57 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 97.51 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.5 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.47 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.45 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.33 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.32 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.28 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 97.26 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 97.19 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.19 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 97.15 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 97.13 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 97.13 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.09 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 97.06 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 97.02 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 97.02 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.01 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 97.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 96.99 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.99 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 96.96 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 96.96 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 96.95 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 96.93 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.92 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 96.92 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.9 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 96.89 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 96.89 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.87 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 96.86 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.85 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 96.85 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 96.84 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 96.83 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 96.83 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.82 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 96.82 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 96.82 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.82 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 96.82 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.82 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.82 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 96.81 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 96.8 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.8 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 96.79 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 96.78 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 96.78 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 96.77 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 96.76 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 96.76 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.75 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.74 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 96.72 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.71 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 96.69 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 96.69 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 96.69 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 96.68 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 96.67 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.67 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 96.67 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 96.67 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.67 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 96.67 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 96.66 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.66 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 96.66 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 96.65 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 96.65 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.65 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 96.64 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 96.63 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.63 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 96.63 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 96.63 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 96.62 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 96.62 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 96.61 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 96.61 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 96.6 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 96.6 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 96.59 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.59 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.59 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 96.59 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 96.59 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 96.59 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 96.58 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 96.58 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 96.57 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.57 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 96.57 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.57 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 96.56 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.56 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 96.56 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.56 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 96.55 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 96.55 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 96.54 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.53 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 96.52 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.51 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.51 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 96.51 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.5 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 96.5 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.49 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 96.48 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.48 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 96.48 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 96.47 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 96.46 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 96.46 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 96.46 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.46 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 96.45 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.45 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 96.44 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 96.44 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.44 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 96.44 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 96.43 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 96.43 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.42 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 96.41 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 96.41 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.41 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 96.4 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 96.39 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 96.39 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 96.39 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 96.38 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 96.38 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.37 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 96.37 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 96.37 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 96.37 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 96.37 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.37 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 96.36 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.36 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 96.34 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 96.33 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 96.33 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.33 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 96.33 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 96.32 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 96.31 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 96.31 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 96.3 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.28 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 96.28 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.27 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 96.27 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.27 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 96.26 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 96.25 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.24 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 96.24 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.24 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.23 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 96.23 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 96.23 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 96.23 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 96.23 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 96.22 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 96.21 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 96.21 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.2 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.2 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 96.19 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.19 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 96.19 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.18 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.17 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 96.17 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 96.16 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 96.16 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 96.15 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.14 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.14 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.13 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 96.13 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 96.12 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 96.12 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.12 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 96.11 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 96.11 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 96.11 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 96.11 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 96.1 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.09 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.08 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.08 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.07 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 96.07 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 96.07 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 96.06 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 96.05 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 96.05 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 96.05 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 96.05 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 96.05 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 96.05 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 96.04 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 96.04 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.03 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 96.03 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 96.03 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 96.03 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 96.02 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 96.02 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 96.01 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 96.01 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 96.01 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 96.0 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 96.0 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 95.99 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 95.99 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 95.99 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 95.98 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.98 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 95.96 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 95.96 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 95.95 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.95 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 95.95 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.94 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 95.94 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 95.93 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 95.93 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 95.92 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 95.92 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 95.92 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.91 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 95.91 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.91 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.9 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 95.89 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 95.89 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 95.88 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.88 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.87 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 95.86 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.85 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 95.85 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 95.84 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 95.83 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 95.83 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 95.83 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 95.82 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 95.82 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 95.82 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 95.8 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 95.79 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.79 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.79 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.79 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 95.78 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 95.78 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.76 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 95.75 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 95.75 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.74 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 95.74 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 95.74 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.73 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 95.73 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 95.72 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 95.72 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 95.69 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 95.69 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 95.68 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 95.67 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 95.65 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 95.65 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.65 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 95.64 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 95.64 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 95.64 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.64 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 95.64 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 95.62 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 95.6 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 95.6 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 95.59 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 95.58 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 95.58 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 95.57 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.57 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 95.57 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 95.56 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.56 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 95.52 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.52 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 95.52 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 95.52 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 95.5 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.49 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 95.49 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 95.48 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 95.48 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 95.42 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.38 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.37 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 95.36 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 95.36 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.35 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 95.35 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 95.31 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.31 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 95.29 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 95.28 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 95.27 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.26 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.24 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 95.23 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 95.23 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 95.21 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 95.21 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 95.21 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.21 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 95.21 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.2 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.2 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 95.19 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 95.19 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.19 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 95.18 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.16 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 95.15 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 95.15 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 95.14 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 95.13 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 95.12 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.12 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 95.11 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 95.1 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 95.09 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 95.06 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 95.06 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 95.04 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 95.03 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 95.03 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 95.01 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 95.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 94.99 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 94.99 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 94.98 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 94.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.95 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 94.94 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 94.93 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 94.93 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 94.92 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 94.92 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.9 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 94.89 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 94.89 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 94.89 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 94.88 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.88 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 94.87 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 94.87 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 94.84 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 94.82 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 94.8 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 94.78 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 94.77 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 94.77 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 94.75 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 94.75 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 94.74 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.73 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 94.73 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 94.73 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 94.73 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 94.72 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 94.71 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 94.7 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 94.69 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 94.68 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 94.66 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 94.65 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 94.64 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 94.63 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 94.62 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 94.59 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 94.59 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 94.58 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 94.57 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 94.56 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 94.56 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 94.55 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 94.55 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 94.54 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 94.54 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 94.53 |
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-61 Score=453.09 Aligned_cols=366 Identities=51% Similarity=0.958 Sum_probs=318.5
Q ss_pred CCccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCC
Q 017460 6 KQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGV 75 (371)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v 75 (371)
+++++++|||+++++++++++++++|.|+|+++||+|||.+++||++|+++++|.++. ++|+|+++|++|
T Consensus 2 ~~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v 81 (378)
T 3uko_A 2 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 81 (378)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTC
T ss_pred CcccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCC
Confidence 3557899999999999988999999999999999999999999999999999987532 699999999999
Q ss_pred CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEE
Q 017460 76 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK 154 (371)
Q Consensus 76 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~ 154 (371)
++|++||||++.+..+|+.|.+|+++++++|.+..... .|+...+|...+..+|....+..+.|+|+||++++++.+++
T Consensus 82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ 161 (378)
T 3uko_A 82 TEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAK 161 (378)
T ss_dssp CSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred CcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEE
Confidence 99999999999999999999999999999999864311 22211233334555555555556678999999999999999
Q ss_pred CCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 155 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 155 ~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
+|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|+++
T Consensus 162 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~ 241 (378)
T 3uko_A 162 IDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE 241 (378)
T ss_dssp CCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCE
T ss_pred CCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcE
Confidence 99999999999999999999999888899999999999999999999999999999978999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEeccc
Q 017460 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLF 314 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~ 314 (371)
++++++.+.++.+.+++++++++|+|||++|+...++.+++++++++|+++.+|.......+++....+.+++++.|+.+
T Consensus 242 vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~ 321 (378)
T 3uko_A 242 FVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAF 321 (378)
T ss_dssp EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSG
T ss_pred EEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhcCcEEEEEEe
Confidence 99886434678999999998899999999999778999999999933999999986554556665555456889999877
Q ss_pred CCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeCCC
Q 017460 315 GGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMPK 371 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~~~ 371 (371)
+.+...+++.++++++.++++++.++++++|+|+++++||+.+.+++..|+||++++
T Consensus 322 ~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~Kvvi~~~~ 378 (378)
T 3uko_A 322 GGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLDTSK 378 (378)
T ss_dssp GGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCSEEEEETTC
T ss_pred cCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCceEEEEecCC
Confidence 655445678999999999999998999999999999999999988887799999875
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-57 Score=428.12 Aligned_cols=361 Identities=42% Similarity=0.748 Sum_probs=299.3
Q ss_pred CCcCCCCccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC---C------eEEEEEee
Q 017460 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP---Q------CCRIVESV 71 (371)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~---~------~~G~V~~~ 71 (371)
|++++ .|++|||+++++++++++++++|.|+|+++||+|||.+++||++|+++++|.++ + ++|+|+++
T Consensus 1 ~~~~~---~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~P~v~GhE~~G~V~~v 77 (373)
T 1p0f_A 1 MCTAG---KDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILGHEAVGVVESI 77 (373)
T ss_dssp -CCTT---SCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSBCCCCCEEEEEEEE
T ss_pred CcccC---CcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCCCCCCcccCcCceEEEEEE
Confidence 66554 468999999999987799999999999999999999999999999999988643 1 69999999
Q ss_pred CCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCC
Q 017460 72 GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 150 (371)
Q Consensus 72 G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~ 150 (371)
|++|++|++||||++.+..+|++|.+|+++++++|.+..... .|+. .+|..++..+|...++....|+|+||++++++
T Consensus 78 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~ 156 (373)
T 1p0f_A 78 GAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADI 156 (373)
T ss_dssp CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETT
T ss_pred CCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccc-cCCccccccCCcccccccCCccceeEEEEchh
Confidence 999999999999999999999999999999999999754210 1222 22211111111111111224799999999999
Q ss_pred ceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 151 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 151 ~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
.++++|++++++ ||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++
T Consensus 157 ~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 235 (373)
T 1p0f_A 157 AVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 235 (373)
T ss_dssp SEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred hEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence 999999999999 9999999999999987888999999999999999999999999999987899999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCC-ceEEEecCCCCCCeeecchhee-eeccE
Q 017460 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGW-GLAVTLGVPKLKPEVAAHYGLF-LSGRT 308 (371)
Q Consensus 231 g~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~ 308 (371)
|+++++++++.+.++.+.+++++++++|+|||++|....++.+++++++ + |+++.+|.........++...+ .++ +
T Consensus 236 Ga~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~ 313 (373)
T 1p0f_A 236 GATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC-GSGVTVVLGLASPNERLPLDPLLLLTGR-S 313 (373)
T ss_dssp TCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECCCCCTTCCEEECTHHHHTTC-E
T ss_pred CCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhc-CCCEEEEEccCCCCCccccCHHHhccCc-e
Confidence 9999998862124688899998877999999999987789999999999 6 9999999765423344444333 345 8
Q ss_pred EEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 309 LKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 309 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
+.|+.++.+. .+++.++++++.++++++.++++++|+|+++++||+.+.+++..|++|++
T Consensus 314 i~g~~~~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 373 (373)
T 1p0f_A 314 LKGSVFGGFK-GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY 373 (373)
T ss_dssp EEECSGGGCC-GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred EEeeccCCcC-HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence 9888765432 25799999999999998888889999999999999999887766999875
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-57 Score=426.54 Aligned_cols=360 Identities=44% Similarity=0.804 Sum_probs=299.4
Q ss_pred CccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC---C------eEEEEEeeCCCCCC
Q 017460 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP---Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~---~------~~G~V~~~G~~v~~ 77 (371)
..++++|||+++++++++++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|++|++
T Consensus 3 ~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~P~v~GhE~~G~V~~vG~~v~~ 82 (374)
T 2jhf_A 3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTT 82 (374)
T ss_dssp TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCSSBCCCCSEEEEEEEECTTCCS
T ss_pred CCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCCCCcccCcCceEEEEEECCCCCC
Confidence 34578999999999987799999999999999999999999999999999988643 2 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
|++||||++.+..+|+.|.+|+++++++|.+..... .|+. .+|..++...|....+....|+|+||++++++.++++|
T Consensus 83 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP 161 (374)
T 2jhf_A 83 VRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID 161 (374)
T ss_dssp CCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred CCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccc-cCCcccccccccccccccCCccCeeEEEEchHHeEECC
Confidence 999999999999999999999999999999764311 1222 22211111111111111224699999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|+++++
T Consensus 162 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi 241 (374)
T 2jhf_A 162 AASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV 241 (374)
T ss_dssp TTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE
T ss_pred CCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEe
Confidence 99999999999999999999987888999999999999999999999999999987899999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCC-ceEEEecCCCCCCeeecchhee-eeccEEEeccc
Q 017460 237 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGW-GLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLF 314 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~ 314 (371)
|+++...++.+.+++++++++|+|||++|....++.+++++++ + |+++.+|.........++...+ .++ ++.++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~ 319 (374)
T 2jhf_A 242 NPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE-AYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIF 319 (374)
T ss_dssp CGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCT-TTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSG
T ss_pred cccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhc-CCcEEEEeccCCCCCccccCHHHHhcCC-eEEEecc
Confidence 8862124688889888877999999999987789999999999 6 9999999765433344443333 346 8988876
Q ss_pred CCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 315 GGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
+.+...+++.++++++.++++++.++++++|+|+++++||+.+.+++..|++|++
T Consensus 320 ~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~ 374 (374)
T 2jhf_A 320 GGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF 374 (374)
T ss_dssp GGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence 5433335788999999999998888889999999999999999888766999875
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-57 Score=425.68 Aligned_cols=360 Identities=48% Similarity=0.865 Sum_probs=299.8
Q ss_pred CCccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhh-hhcCCCC---C------eEEEEEeeCCCC
Q 017460 6 KQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT-AWETQWP---Q------CCRIVESVGPGV 75 (371)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~-~~~g~~~---~------~~G~V~~~G~~v 75 (371)
+...+++|||+++++++++++++++|.|+|+++||+|||.+++||++|++ ++.|.++ + ++|+|+++|++|
T Consensus 2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~P~v~GhE~~G~V~~vG~~V 81 (374)
T 1cdo_A 2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV 81 (374)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCCCCCCcccCccceEEEEEECCCC
Confidence 34568899999999998779999999999999999999999999999999 8888643 1 699999999999
Q ss_pred CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEE
Q 017460 76 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK 154 (371)
Q Consensus 76 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~ 154 (371)
++|++||||++.+..+|+.|.+|+++++++|.+..... .|+. .+|..++..+|....+....|+|+||++++++.+++
T Consensus 82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ 160 (374)
T 1cdo_A 82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK 160 (374)
T ss_dssp CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred ccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccc-cCCccccccCCcccccccCCccceeEEEEchhheEE
Confidence 99999999999999999999999999999998754311 1222 222211111111111112236999999999999999
Q ss_pred CCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 155 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 155 ~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
+|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|+++
T Consensus 161 ~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~ 240 (374)
T 1cdo_A 161 IDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240 (374)
T ss_dssp CCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE
T ss_pred CCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCce
Confidence 99999999999999999999999878899999999999999999999999999999978999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCC-ceEEEecCCCCCCeeecchhee-eeccEEEec
Q 017460 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGW-GLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGS 312 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~ 312 (371)
++++++.+.++.+.+++++++++|+|||++|....++.+++++++ + |+++.+|.... ....++...+ .++ ++.|+
T Consensus 241 vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~-~~~~~~~~~~~~~~-~i~g~ 317 (374)
T 1cdo_A 241 FVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK-GWGVSVLVGWTDL-HDVATRPIQLIAGR-TWKGS 317 (374)
T ss_dssp EECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCSS-SCEEECHHHHHTTC-EEEEC
T ss_pred EEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCCCC-CCcccCHHHHhcCC-eEEEE
Confidence 998862124688889888877999999999987788999999999 7 99999997654 3344443333 345 88888
Q ss_pred ccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 313 LFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
.++.+...+++.++++++.++++++.++++++|+|+++++||+.+++++..|++|++
T Consensus 318 ~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 374 (374)
T 1cdo_A 318 MFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 374 (374)
T ss_dssp SGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred ecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence 665433345788999999999998888889999999999999999888767999875
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=427.93 Aligned_cols=359 Identities=47% Similarity=0.870 Sum_probs=298.8
Q ss_pred ccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCC
Q 017460 8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 8 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~ 77 (371)
+.|++|||+++++++++++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|++|++
T Consensus 2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~ 81 (373)
T 2fzw_A 2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK 81 (373)
T ss_dssp CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCC
Confidence 4678999999999987799999999999999999999999999999999988643 1 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
|++||||++.+..+|+.|.+|+++++++|.+..... .|+. .+|..++...|....+..+.|+|+||++++++.++++|
T Consensus 82 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP 160 (373)
T 2fzw_A 82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID 160 (373)
T ss_dssp CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred CCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccc-cCCcccccccccccccccCCccceeEEEEchhheEECC
Confidence 999999999999999999999999999998753210 1221 22211111111111111224699999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|+++++
T Consensus 161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi 240 (373)
T 2fzw_A 161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 240 (373)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE
T ss_pred CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEe
Confidence 99999999999999999999987888999999999999999999999999999987899999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCC-ceEEEecCCCCCCeeecchhee-eeccEEEeccc
Q 017460 237 NPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGW-GLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLF 314 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~ 314 (371)
++++...++.+.+++++++++|+|||++|....++.+++++++ + |+++.+|.........++...+ .++ ++.|+.+
T Consensus 241 ~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~ 318 (373)
T 2fzw_A 241 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK-GWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAF 318 (373)
T ss_dssp CGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSG
T ss_pred ccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhcc-CCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEecc
Confidence 8862124688889998877999999999987789999999999 7 9999999765423344444333 345 8988866
Q ss_pred CCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 315 GGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
+.+...+++.++++++.++++++.++++++|+|+++++||+.+.+++..|++|++
T Consensus 319 ~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 373 (373)
T 2fzw_A 319 GGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 373 (373)
T ss_dssp GGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcceEEEeC
Confidence 5433335788999999999998888889999999999999999888767999875
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-57 Score=424.58 Aligned_cols=358 Identities=45% Similarity=0.811 Sum_probs=296.6
Q ss_pred CccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC----CC-----eEEEEEeeCCCCCC
Q 017460 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW----PQ-----CCRIVESVGPGVTE 77 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~----~~-----~~G~V~~~G~~v~~ 77 (371)
+..|++|||+++++++.+++++++|.|+|+++||+|||.+++||++|++++.|.. |. ++|+|+++|++|++
T Consensus 3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~P~v~GhE~~G~V~~vG~~v~~ 82 (376)
T 1e3i_A 3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVTN 82 (376)
T ss_dssp TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCCCCCCCCcccCccccEEEEEECCCCcc
Confidence 4568899999999998779999999999999999999999999999999998852 11 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCccccc----c-cccccccCCCccceeccCcccccccCccceeeEEEeeCCce
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLG----L-ERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA 152 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~----~-~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~ 152 (371)
|++||||++.+..+|++|.+|+++++++|.+.. . ...|+. .+|..++..+|....+....|+|+||++++++.+
T Consensus 83 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~ 161 (376)
T 1e3i_A 83 FKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELM-EDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL 161 (376)
T ss_dssp CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred CCCCCEEEECCcCCCCCCccccCCCcccCcCcCcccccccccccc-ccCccccccCCcccccccCCccceeEEEeccccE
Confidence 999999999999999999999999999998754 1 001221 1221111111111111112369999999999999
Q ss_pred EECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC
Q 017460 153 VKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232 (371)
Q Consensus 153 ~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~ 232 (371)
+++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|+
T Consensus 162 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa 241 (376)
T 1e3i_A 162 ARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA 241 (376)
T ss_dssp EECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred EECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence 99999999999999999999999998788999999999999999999999999999999789999999999999999999
Q ss_pred ceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCC-ceEEEecCCCCCCeeecchhee-eeccEEE
Q 017460 233 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGW-GLAVTLGVPKLKPEVAAHYGLF-LSGRTLK 310 (371)
Q Consensus 233 ~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~ 310 (371)
++++|+++.+.++.+.+++++++++|+|||++|....++.+++++++ + |+++.+|... ....++...+ .++ ++.
T Consensus 242 ~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~-~~G~iv~~G~~~--~~~~~~~~~~~~~~-~i~ 317 (376)
T 1e3i_A 242 TDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL-GWGSCTVVGAKV--DEMTIPTVDVILGR-SIN 317 (376)
T ss_dssp SEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCT-TTCEEEECCCSS--SEEEEEHHHHHTTC-EEE
T ss_pred cEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhc-CCCEEEEECCCC--CccccCHHHhhccC-eEE
Confidence 99998862125688889988877999999999987789999999999 6 9999999732 3444444333 346 898
Q ss_pred ecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 311 GSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 311 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
++.++.+...+++.++++++.++++++.++++++|+|+++++||+.+.+++..|++|++
T Consensus 318 g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~ 376 (376)
T 1e3i_A 318 GTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF 376 (376)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred EEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcceEEEeC
Confidence 88765433335788999999999998888889999999999999999888766999875
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-57 Score=423.52 Aligned_cols=355 Identities=30% Similarity=0.523 Sum_probs=294.5
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~ 80 (371)
+++|||+++++++.+++++++|.|+++++||+|||.+++||++|++++.|.++. ++|+|+++|++|++|++
T Consensus 4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~P~v~GhE~~G~V~~vG~~v~~~~~ 83 (371)
T 1f8f_A 4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQV 83 (371)
T ss_dssp CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCCCCCCcccCcccceEEEEeCCCCCCCCC
Confidence 467999999999877999999999999999999999999999999999986531 69999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCcccee-ccCccc-ccccCccceeeEEEeeCCceEECCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFS-IKGKPV-YHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~-~~~~~~-~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
||||++.+ .+|+.|++|+++++++|.+..... .|.. .+|...+. ..|... .+....|+|+||++++++.++++|+
T Consensus 84 GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~ 161 (371)
T 1f8f_A 84 GDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK 161 (371)
T ss_dssp TCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred CCEEEecC-CCCCCChhhhCcCcccccccccccccccc-ccccccccccCCccccccccCCccccCeEEechhheEECCC
Confidence 99999999 999999999999999998754210 1111 11111000 000000 0011236999999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|++++++
T Consensus 162 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~ 241 (371)
T 1f8f_A 162 DVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVIN 241 (371)
T ss_dssp TSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEec
Confidence 99999999999999999999878889999999999999999999999999999967999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccCC
Q 017460 238 PNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGG 316 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~ 316 (371)
++ +.++.+.+++++++++|+|||++|....++.++++++++ |+++.+|.........++... +.+++++.++..+.
T Consensus 242 ~~--~~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 318 (371)
T 1f8f_A 242 SK--TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGS 318 (371)
T ss_dssp TT--TSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGG
T ss_pred CC--ccCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCC
Confidence 87 567888999988779999999999877899999999997 999999976532223333322 24689999987654
Q ss_pred CCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeCC
Q 017460 317 WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMP 370 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~~ 370 (371)
+...+++.++++++.++++++.+++++ |+|+++++||+.+.+++..|++|++.
T Consensus 319 ~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~~ 371 (371)
T 1f8f_A 319 GSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKIA 371 (371)
T ss_dssp SCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEECC
T ss_pred CchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEeeC
Confidence 322356889999999999988888888 99999999999998887679999864
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=419.77 Aligned_cols=332 Identities=22% Similarity=0.324 Sum_probs=291.3
Q ss_pred ccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCC
Q 017460 8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEF 78 (371)
Q Consensus 8 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~ 78 (371)
+.+.+|||+++++++. ++++++|.|+|++|||+|||.|++||++|+++++|.++. ++|+|+++|++|++|
T Consensus 19 ~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~p~v~G~e~~G~V~~vG~~v~~~ 97 (370)
T 4ej6_A 19 YFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTPPVTLGHEFCGIVVEAGSAVRDI 97 (370)
T ss_dssp --CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSEECCCSEEEEEEEECTTCCSS
T ss_pred ccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCCCCCCeecCcceEEEEEEECCCCCCC
Confidence 4588999999999875 999999999999999999999999999999999986532 699999999999999
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
++||||++.+..+|+.|.+|+++++++|.+... .|+. .+ |+|+||++++++.++++|++
T Consensus 98 ~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~~P~~ 156 (370)
T 4ej6_A 98 APGARITGDPNISCGRCPQCQAGRVNLCRNLRA--IGIH-RD------------------GGFAEYVLVPRKQAFEIPLT 156 (370)
T ss_dssp CTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEEEGGGEEEECTT
T ss_pred CCCCEEEECCCCCCCCChHHhCcCcccCCCccc--cCCC-CC------------------CcceEEEEEchhhEEECCCC
Confidence 999999999999999999999999999998654 3333 22 48999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+++++|| +..++++||+++ +.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|++.++|+
T Consensus 157 ~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~ 234 (370)
T 4ej6_A 157 LDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDP 234 (370)
T ss_dssp SCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECT
T ss_pred CCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECC
Confidence 9999998 555999999998 88999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCchHHHHHHH---HhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEeccc
Q 017460 239 NDNNEPVQQVIKR---ITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLF 314 (371)
Q Consensus 239 ~~~~~~~~~~v~~---~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~ 314 (371)
+ ..++.+.+++ ++++++|+|||++|....++.++++++++ |+++.+|.........++...+ .+++++.|+..
T Consensus 235 ~--~~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~ 311 (370)
T 4ej6_A 235 S--AGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRVLGSFI 311 (370)
T ss_dssp T--SSCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCS
T ss_pred C--CcCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCHHHHHhCCcEEEEecc
Confidence 7 6788888888 77679999999999877899999999997 9999999765533344444333 46899999875
Q ss_pred CCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee--eEEEeCC
Q 017460 315 GGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL--RSVIHMP 370 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~--kvvi~~~ 370 (371)
.. .++.++++++.+|++++.++++++|+|+++++||+.+.+++.. |++++++
T Consensus 312 ~~----~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~ 365 (370)
T 4ej6_A 312 NP----FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAE 365 (370)
T ss_dssp CT----TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC--
T ss_pred Ch----HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEccc
Confidence 43 4699999999999999999999999999999999999877643 8887765
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-55 Score=407.10 Aligned_cols=330 Identities=22% Similarity=0.346 Sum_probs=287.6
Q ss_pred eeEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||++++++|. ++++|+|.|++ ++|||||||.|+|||++|++.+.|..+. ++|+|+++|++|+.+++||
T Consensus 1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~~~P~i~G~E~~G~V~~vG~~V~~~~~Gd 79 (346)
T 4a2c_A 1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGD 79 (346)
T ss_dssp CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSSSSSBCCCCEEEEEEEEECTTCCSCCTTC
T ss_pred CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCCCCCccccEEEEEEEEEECCCcccccCCC
Confidence 89999999987 99999999985 7999999999999999999988876543 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChh
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLE 162 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~ 162 (371)
||++.+...|+.|.+|+.+++++|.+.... |.. .+ |+|+||++++++.++++|++++++
T Consensus 80 rV~~~~~~~~g~c~~c~~g~~~~c~~~~~~--g~~-~~------------------G~~aey~~v~~~~~~~iP~~l~~~ 138 (346)
T 4a2c_A 80 AVACVPLLPCFTCPECLKGFYSQCAKYDFI--GSR-RD------------------GGFAEYIVVKRKNVFALPTDMPIE 138 (346)
T ss_dssp EEEECCEECCSCSHHHHTTCGGGCSSCEEB--TTT-BC------------------CSSBSEEEEEGGGEEECCTTSCGG
T ss_pred eEEeeeccCCCCcccccCCccccCCCcccc--cCC-CC------------------cccccccccchheEEECCCCCCHH
Confidence 999999999999999999999999987653 332 33 489999999999999999999999
Q ss_pred hhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 017460 163 KICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 163 ~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
+||+++ ++++++++ .+..++++|++|||+|+|++|++++|+|+++|+..+++++++++|+++++++|+++++|++ +
T Consensus 139 ~aa~l~-~~~~~~~~-~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~--~ 214 (346)
T 4a2c_A 139 DGAFIE-PITVGLHA-FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSS--E 214 (346)
T ss_dssp GGGGHH-HHHHHHHH-HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETT--T
T ss_pred HHHhch-HHHHHHHH-HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCC--C
Confidence 999886 55566665 4788999999999999999999999999999997788999999999999999999999998 6
Q ss_pred chHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeec-chh-eeeeccEEEecccCCCC-
Q 017460 243 EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAA-HYG-LFLSGRTLKGSLFGGWK- 318 (371)
Q Consensus 243 ~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~-~~~~~~~i~g~~~~~~~- 318 (371)
.++.+.++.++++ ++|+|+|++|....++.++++++++ |+++.+|.......+.. +.. .+.+++++.|++.....
T Consensus 215 ~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~ 293 (346)
T 4a2c_A 215 MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSP 293 (346)
T ss_dssp SCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSS
T ss_pred CCHHHHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCc
Confidence 7788888888888 9999999999888899999999997 99999998765333222 211 23568999998654322
Q ss_pred -cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 319 -PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
..+++.++++++.+++++++++|+++|+|+++++||+.+.+++.. |+||.+
T Consensus 294 ~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P 346 (346)
T 4a2c_A 294 WPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP 346 (346)
T ss_dssp TTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred chHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence 134688999999999999999999999999999999999988877 999864
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-55 Score=407.58 Aligned_cols=332 Identities=27% Similarity=0.374 Sum_probs=275.2
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcC-CCC------C------eEEEEEeeCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET-QWP------Q------CCRIVESVGPGVT 76 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g-~~~------~------~~G~V~~~G~~v~ 76 (371)
|++|||+++++++..++++++|.|+|+++||+|||.+++||++|+++++| .++ + ++|+|+++|++|+
T Consensus 2 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~ 81 (348)
T 2d8a_A 2 SEKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVE 81 (348)
T ss_dssp -CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred CCcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCC
Confidence 56799999999985599999999999999999999999999999999988 421 1 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+|++||||++.+..+|+.|.+|+++++++|.+... .|.. .+ |+|+||++++++.++++|
T Consensus 82 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP 140 (348)
T 2d8a_A 82 GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI--FGVD-TD------------------GVFAEYAVVPAQNIWKNP 140 (348)
T ss_dssp SCCTTCEEEECCEECCSCCC------------CEE--TTTS-SC------------------CSSBSEEEEEGGGEEECC
T ss_pred cCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe--ecCC-CC------------------CcCcceEEeChHHeEECC
Confidence 99999999999999999999999999999997654 2322 22 489999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
+++++++||+++ +++|||+++ +.+++ +|++|||+|+|++|++++|+|+++|+++|+++++++++++.++++|+++++
T Consensus 141 ~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~ 217 (348)
T 2d8a_A 141 KSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI 217 (348)
T ss_dssp TTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEE
T ss_pred CCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence 999999999886 888999998 77889 999999999999999999999999987899999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccC
Q 017460 237 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFG 315 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 315 (371)
+++ +.++.+.+++++++ ++|+|||++|....++.++++++++ |+++.+|.......++.....+.+++++.|+...
T Consensus 218 ~~~--~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 294 (348)
T 2d8a_A 218 NPF--EEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGR 294 (348)
T ss_dssp CTT--TSCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSSCCCCCHHHHTTTTTCEEEECCCC
T ss_pred CCC--CcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCCCcccCchHHHHhCCcEEEEecCC
Confidence 987 56788999999988 9999999999877889999999997 9999999765422232201223568899887643
Q ss_pred CCCcCCCHHHHHHHHHcCCCCCCcceeeeec-chhHHHHHHHHHcCCeeeEEEeCC
Q 017460 316 GWKPKTDLPSLVNRYLKKEFMVDEFITHNLL-FEDINQAFNLMKEGKCLRSVIHMP 370 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~kvvi~~~ 370 (371)
.. ..++.++++++.++++++.++++++|+ ++++++||+.++++...|++|+++
T Consensus 295 ~~--~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi~~~ 348 (348)
T 2d8a_A 295 HL--WETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFMLK 348 (348)
T ss_dssp CS--HHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEEEC-
T ss_pred Cc--HHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEEeeC
Confidence 21 346889999999999988888999999 999999999997743349999864
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-55 Score=406.52 Aligned_cols=325 Identities=25% Similarity=0.423 Sum_probs=287.6
Q ss_pred eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCCC
Q 017460 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 12 ~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~~ 80 (371)
+|||+++++++++++++++|.|+|++|||+|||.+++||++|+++++|.++. ++|+|+++|++|++|++
T Consensus 2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v 81 (340)
T 3s2e_A 2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE 81 (340)
T ss_dssp EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence 6999999999888999999999999999999999999999999999986541 69999999999999999
Q ss_pred CCEE-EeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 81 GEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 81 Gd~V-~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
|||| +.++..+|+.|.+|+++++++|.+... .|+. .+ |+|+||++++++.++++|+++
T Consensus 82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP~~~ 140 (340)
T 3s2e_A 82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN--TGYS-VN------------------GGYGEYVVADPNYVGLLPDKV 140 (340)
T ss_dssp TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEECTTTSEECCTTS
T ss_pred CCEEEecCCCCCCCCChHHhCcCcccCccccc--cCCC-CC------------------CcceeEEEechHHEEECCCCC
Confidence 9999 556788999999999999999998765 3332 22 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+++|+ +|++++++++|++.++++|+++++|++
T Consensus 141 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~ 218 (340)
T 3s2e_A 141 GFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNAR 218 (340)
T ss_dssp CHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred CHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence 9999999999999999998 77899999999999999999999999999999 999999999999999999999999987
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~ 318 (371)
+.++.+.+++ +.+++|+|||++|+...++.++++++++ |+++.+|.... ...++... +.+++++.++....
T Consensus 219 --~~~~~~~~~~-~~g~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~i~g~~~~~-- 290 (340)
T 3s2e_A 219 --DTDPAAWLQK-EIGGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPG--DFGTPIFDVVLKGITIRGSIVGT-- 290 (340)
T ss_dssp --TSCHHHHHHH-HHSSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCSS--EEEEEHHHHHHTTCEEEECCSCC--
T ss_pred --CcCHHHHHHH-hCCCCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCCC--CCCCCHHHHHhCCeEEEEEecCC--
Confidence 6678888888 4459999999999888899999999997 99999997654 33333322 24689999887653
Q ss_pred cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 319 PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
.+++.++++++.++++++. .++|+|+++++||+.+.+++.. |+||++++
T Consensus 291 -~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~ 340 (340)
T 3s2e_A 291 -RSDLQESLDFAAHGDVKAT---VSTAKLDDVNDVFGRLREGKVEGRVVLDFSR 340 (340)
T ss_dssp -HHHHHHHHHHHHTTSCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred -HHHHHHHHHHHHhCCCCce---EEEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4579999999999998763 4788999999999999999887 99999874
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-55 Score=408.87 Aligned_cols=332 Identities=20% Similarity=0.258 Sum_probs=285.1
Q ss_pred cceeeeEEEEecCCCCeEEEEeecC--------CCCCCcEEEEEeeecCCcchhhhhcC----CC----CC-----eEEE
Q 017460 9 QVITCKAAVAWGAGQPLVVEEVEVN--------PPQPEEIRIKVVCTSLCRSDITAWET----QW----PQ-----CCRI 67 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~~l~~~~~~~p--------~~~~~evlV~v~~~~i~~~D~~~~~g----~~----~~-----~~G~ 67 (371)
++++|||+++++++. +++.++|.| +|+++||+|||.+++||++|++++++ .. |. ++|+
T Consensus 5 ~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~ 83 (363)
T 3m6i_A 5 ASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGE 83 (363)
T ss_dssp CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEE
T ss_pred CcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEE
Confidence 467899999998876 999999999 99999999999999999999998862 21 11 6999
Q ss_pred EEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEe
Q 017460 68 VESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV 147 (371)
Q Consensus 68 V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~ 147 (371)
|+++|++|++|++||||++.+..+|+.|.+|++++++.|.+.... |.... .|+|+||+++
T Consensus 84 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~--g~~~~------------------~G~~aey~~v 143 (363)
T 3m6i_A 84 VIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFL--STPPV------------------PGLLRRYVNH 143 (363)
T ss_dssp EEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEET--TSTTS------------------CCSCBSEEEE
T ss_pred EEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCcccc--CCCCC------------------CccceeEEEE
Confidence 999999999999999999999999999999999999999987652 22101 2589999999
Q ss_pred eCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH
Q 017460 148 HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227 (371)
Q Consensus 148 ~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~ 227 (371)
+++.++++|+ +++++||++. +++|||+++ +.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++++
T Consensus 144 ~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a 220 (363)
T 3m6i_A 144 PAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFA 220 (363)
T ss_dssp EGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH
T ss_pred ehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 9999999999 9999999885 889999998 889999999999999999999999999999995599999999999999
Q ss_pred HHcCCceEeCCC---CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee
Q 017460 228 KAFGVTEFLNPN---DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF 303 (371)
Q Consensus 228 ~~lg~~~vi~~~---~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~ 303 (371)
+++ ++.+++++ .+..++.+.+++++++ ++|+|||++|+...++.++++++++ |+++.+|.......+++.. .+
T Consensus 221 ~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~-~~ 297 (363)
T 3m6i_A 221 KEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGKNEIQIPFMR-AS 297 (363)
T ss_dssp HHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCCSCCCCCHHH-HH
T ss_pred HHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCCCCccccHHH-HH
Confidence 999 65555432 1136788999999988 9999999999977899999999997 9999999765433333322 22
Q ss_pred eeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcC-Cee-eEEEeCCC
Q 017460 304 LSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEG-KCL-RSVIHMPK 371 (371)
Q Consensus 304 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~-~~~-kvvi~~~~ 371 (371)
.+++++.++... ..++.++++++.++++++.++++++|+|+++++||+.+.++ ... |++|+.++
T Consensus 298 ~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~ 363 (363)
T 3m6i_A 298 VREVDLQFQYRY----CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE 363 (363)
T ss_dssp HHTCEEEECCSC----SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred hcCcEEEEccCC----HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence 468899888643 46899999999999999888999999999999999999887 444 99998864
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-55 Score=406.44 Aligned_cols=332 Identities=23% Similarity=0.335 Sum_probs=289.4
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhh-hhcCCCCC---------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDIT-AWETQWPQ---------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~-~~~g~~~~---------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||++++++++ ++++++|.|+|+++||+|||.+++||++|++ ++.|.++. ++|+|+++|++|++|++||
T Consensus 1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGd 79 (352)
T 3fpc_A 1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGD 79 (352)
T ss_dssp CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCCCSSEECCCEEEEEEEEECTTCCSCCTTC
T ss_pred CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCCCCCcccCCcceEEEEEECCCCCcCCCCC
Confidence 89999999988 9999999999999999999999999999999 55776542 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCC--ceEECCCCC
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG--CAVKVSSIA 159 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~~P~~~ 159 (371)
||++.+..+|+.|.+|++++++.|....... .|.. ..|+|+||+++++. .++++|+++
T Consensus 80 rV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~-------------------~~G~~aey~~v~~~~~~~~~iP~~~ 140 (352)
T 3fpc_A 80 RVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNV-------------------KDGVFGEFFHVNDADMNLAHLPKEI 140 (352)
T ss_dssp EEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTT-------------------BCCSSBSCEEESSHHHHCEECCTTS
T ss_pred EEEEccccCCCCchhhcCCCcCCccccccccccccC-------------------CCCcccceEEeccccCeEEECCCCC
Confidence 9999999999999999999999887543210 1111 13589999999976 999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++|++++++++|||+++ +.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|++++++++
T Consensus 141 ~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~ 219 (352)
T 3fpc_A 141 PLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYK 219 (352)
T ss_dssp CHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGG
T ss_pred CHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCC
Confidence 9999999988999999998 889999999999999999999999999999997899999999999999999999999987
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee---eeccEEEecccC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF---LSGRTLKGSLFG 315 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~---~~~~~i~g~~~~ 315 (371)
+.++.+.+++++++ ++|+|||++|+...++.++++++++ |+++.+|.......++++...+ +++.++.++...
T Consensus 220 --~~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~ 296 (352)
T 3fpc_A 220 --NGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCP 296 (352)
T ss_dssp --GSCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCC
T ss_pred --CcCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCCCCceecchhHhhhhccccEEEEeecc
Confidence 67899999999998 9999999999877899999999997 9999999876545555544332 357788887542
Q ss_pred CCCcCCCHHHHHHHHHcCCCCCCcceeeeec-chhHHHHHHHHHcCCe--eeEEEeCC
Q 017460 316 GWKPKTDLPSLVNRYLKKEFMVDEFITHNLL-FEDINQAFNLMKEGKC--LRSVIHMP 370 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~--~kvvi~~~ 370 (371)
.. ..+++++++++.++++++.++++++|+ |+++++||+.+.+++. .|+||++.
T Consensus 297 ~~--~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~ 352 (352)
T 3fpc_A 297 GG--RLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352 (352)
T ss_dssp CH--HHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred Cc--hhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence 21 346899999999999999889999999 9999999999988653 39999874
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-54 Score=403.44 Aligned_cols=331 Identities=23% Similarity=0.335 Sum_probs=282.7
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhc-CCC-------CC-----eEEEEEeeCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE-TQW-------PQ-----CCRIVESVGPGVT 76 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~-g~~-------~~-----~~G~V~~~G~~v~ 76 (371)
+++|||+++++++. ++++++|.|+|+++||+|||.+++||++|++++. |.+ |. ++|+|+++|++|+
T Consensus 2 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~ 80 (352)
T 1e3j_A 2 ASDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK 80 (352)
T ss_dssp --CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred cccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence 35699999999875 9999999999999999999999999999999887 322 11 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+|++||||++.+..+|+.|.+|+++++++|.+..+ .|.... .|+|+||++++++.++++|
T Consensus 81 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~~~------------------~G~~aey~~v~~~~~~~iP 140 (352)
T 1e3j_A 81 HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF--CATPPD------------------DGNLARYYVHAADFCHKLP 140 (352)
T ss_dssp SCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE--TTBTTB------------------CCSCBSEEEEEGGGEEECC
T ss_pred CCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc--cCcCCC------------------CccceeEEEeChHHeEECc
Confidence 99999999999999999999999999999997654 222101 2589999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
+++++++|+++ .++++||+++ +.+++++|++|||+|+|++|++++|+|+++|+ +|++++++++++++++++|+++++
T Consensus 141 ~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~ 217 (352)
T 1e3j_A 141 DNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTL 217 (352)
T ss_dssp TTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEE
Confidence 99999999977 4888999998 78899999999999999999999999999999 799999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhC---C-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEec
Q 017460 237 NPNDNNEPVQQVIKRITD---G-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGS 312 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~---g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~ 312 (371)
++++ ..++.+.+++.++ + ++|+|||++|....++.++++++++ |+++.+|.......++.. ..+.+++++.++
T Consensus 218 ~~~~-~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~ 294 (352)
T 1e3j_A 218 VVDP-AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQMVTVPLV-NACAREIDIKSV 294 (352)
T ss_dssp ECCT-TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSSCCCCCHH-HHHTTTCEEEEC
T ss_pred cCcc-cccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCccccHH-HHHhcCcEEEEe
Confidence 8862 1567778888776 5 8999999999876789999999997 999999875432223221 222468888887
Q ss_pred ccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCC-ee-eEEEeCCC
Q 017460 313 LFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK-CL-RSVIHMPK 371 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~-~~-kvvi~~~~ 371 (371)
... ..++.++++++.++++++.++++++|+++++++||+.+.+++ .. |+||++++
T Consensus 295 ~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~ 351 (352)
T 1e3j_A 295 FRY----CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ 351 (352)
T ss_dssp CSC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred ccc----hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 543 357999999999999988888899999999999999998887 45 99998753
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-54 Score=401.97 Aligned_cols=326 Identities=24% Similarity=0.337 Sum_probs=284.6
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------C------eEEEEEeeCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------Q------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------~------~~G~V~~~G~~v~~~~~ 80 (371)
|||+++++++++++++++|.|+|++|||+|||.+++||++|+++++|.++ + ++|+|+++|++|++|++
T Consensus 1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v 80 (345)
T 3jv7_A 1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV 80 (345)
T ss_dssp CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence 89999999998899999999999999999999999999999999988643 1 69999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccc-cccc--cccccCCCccceeccCcccccccCccceeeEEEee-CCceEECC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVL-GLER--RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKVS 156 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~-~~~~--~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~-~~~~~~~P 156 (371)
||||++.+..+|+.|.+|+++++++|... .... .|+. . .|+|+||++++ ++.++++|
T Consensus 81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~-~------------------~G~~aey~~v~~~~~~~~~p 141 (345)
T 3jv7_A 81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLG-S------------------PGSMAEYMIVDSARHLVPIG 141 (345)
T ss_dssp TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTT-B------------------CCSSBSEEEESCGGGEEECT
T ss_pred CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcC-C------------------CceeeEEEEecchhceEeCC
Confidence 99999999999999999999999999432 2210 1211 1 25899999999 99999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhh-hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWN-VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~-~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
+ +++++||.+++++.|||+++.+ ..++++|++|||+|+|++|++++|+|+++|..+|++++++++|++.++++|++++
T Consensus 142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~ 220 (345)
T 3jv7_A 142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAA 220 (345)
T ss_dssp T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEE
T ss_pred C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 9 9999999999999999999865 4489999999999999999999999999944499999999999999999999999
Q ss_pred eCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEeccc
Q 017460 236 LNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLF 314 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~ 314 (371)
++++ . ++.+.+++++++ ++|+|||++|+...++.++++++++ |+++.+|..... ...++...+.+++++.++..
T Consensus 221 i~~~--~-~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~i~g~~~ 295 (345)
T 3jv7_A 221 VKSG--A-GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGA-HAKVGFFMIPFGASVVTPYW 295 (345)
T ss_dssp EECS--T-THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTTC-CEEESTTTSCTTCEEECCCS
T ss_pred EcCC--C-cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCC-CCCcCHHHHhCCCEEEEEec
Confidence 9985 3 788999999998 9999999999977899999999997 999999987551 33333344456899998876
Q ss_pred CCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 315 GGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.. .+++.++++++.++++++ ++++|+++++++||+.+.+++.. |+||++
T Consensus 296 ~~---~~~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p 345 (345)
T 3jv7_A 296 GT---RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVVVP 345 (345)
T ss_dssp CC---HHHHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred CC---HHHHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence 54 357899999999999876 35899999999999999999887 999874
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-54 Score=402.56 Aligned_cols=331 Identities=21% Similarity=0.314 Sum_probs=283.9
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC--------CCC-----eEEEEEeeCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ--------WPQ-----CCRIVESVGPGVT 76 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~--------~~~-----~~G~V~~~G~~v~ 76 (371)
.++|||+++++++. ++++++|.|+|+++||+|||.+++||++|++++.|. +|. ++|+|+++|++|+
T Consensus 5 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~ 83 (356)
T 1pl8_A 5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK 83 (356)
T ss_dssp CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred ccCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence 36799999999865 999999999999999999999999999999988731 121 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+|++||||++.+..+|+.|.+|+++++++|.+..+ .|.... .|+|+||++++++.++++|
T Consensus 84 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~~~------------------~G~~aey~~v~~~~~~~iP 143 (356)
T 1pl8_A 84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF--CATPPD------------------DGNLCRFYKHNAAFCYKLP 143 (356)
T ss_dssp SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE--TTBTTB------------------CCSCBSEEEEEGGGEEECC
T ss_pred CCCCCCEEEEeccCCCCCChHHHCcCcccCCCccc--cCcCCC------------------CCccccEEEeehHHEEECc
Confidence 99999999999999999999999999999997654 222101 2589999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
+++++++|+++ .++.+||+++ +.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|+++++
T Consensus 144 ~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi 221 (356)
T 1pl8_A 144 DNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVL 221 (356)
T ss_dssp TTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence 99999999977 4889999998 788999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCC-CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccC
Q 017460 237 NPNDN-NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFG 315 (371)
Q Consensus 237 ~~~~~-~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 315 (371)
++++. ..++.+.+++.+++++|+|||++|....++.++++++++ |+++.+|.......+++. ..+.+++++.++...
T Consensus 222 ~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~ 299 (356)
T 1pl8_A 222 QISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSEMTTVPLL-HAAIREVDIKGVFRY 299 (356)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCSCCCCCHH-HHHHTTCEEEECCSC
T ss_pred cCcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCCCCCccCHH-HHHhcceEEEEeccc
Confidence 87510 146777888877668999999999877789999999997 999999875432223221 123468899887643
Q ss_pred CCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 316 GWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
..++.++++++.++++++.++++++|+++++++||+.+.++ .. |++|+++
T Consensus 300 ----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~-~~gKvvi~~~ 350 (356)
T 1pl8_A 300 ----CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKG-LGLKIMLKCD 350 (356)
T ss_dssp ----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTT-CCSEEEEECC
T ss_pred ----HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCC-CceEEEEeCC
Confidence 35799999999999998888899999999999999999888 55 9999875
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=405.44 Aligned_cols=325 Identities=22% Similarity=0.336 Sum_probs=278.5
Q ss_pred cceeeeEEEEecCCCCeEEEEeecCC-CCCCcEEEEEeeecCCcchhhhhcCCCC-------C------eEEEEEeeCCC
Q 017460 9 QVITCKAAVAWGAGQPLVVEEVEVNP-PQPEEIRIKVVCTSLCRSDITAWETQWP-------Q------CCRIVESVGPG 74 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~~l~~~~~~~p~-~~~~evlV~v~~~~i~~~D~~~~~g~~~-------~------~~G~V~~~G~~ 74 (371)
.+.+|||+++++++++++++++|.|+ |++|||+|||.|++||++|++++.|.++ + ++|+|+++|++
T Consensus 12 ~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~ 91 (359)
T 1h2b_A 12 GVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEG 91 (359)
T ss_dssp -----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTT
T ss_pred ChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCC
Confidence 36789999999998679999999999 9999999999999999999999988643 1 69999999999
Q ss_pred CCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEE
Q 017460 75 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK 154 (371)
Q Consensus 75 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~ 154 (371)
|++|++||||+.++..+|+.|.+|+++++++|.+... .|+. .+ |+|+||++++++.+++
T Consensus 92 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~--~G~~-~~------------------G~~aey~~v~~~~~~~ 150 (359)
T 1h2b_A 92 VEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF--PGLN-ID------------------GGFAEFMRTSHRSVIK 150 (359)
T ss_dssp CCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC--BTTT-BC------------------CSSBSEEEECGGGEEE
T ss_pred CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc--cccC-CC------------------CcccceEEechHhEEE
Confidence 9999999999999899999999999999999987653 3332 22 4899999999999999
Q ss_pred CCCCCChhhhh---hcchhhhhHHhHhhhh-cCCCCCCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHH
Q 017460 155 VSSIAPLEKIC---LLSCGLSAGLGAAWNV-ADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 155 ~P~~~~~~~aa---~~~~~~~~a~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~ 229 (371)
+|+++++++|| .+++++.|||+++.+. +++++|++|||+|+|++|++++|+|+++ |+ +|++++++++|++++++
T Consensus 151 iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~ 229 (359)
T 1h2b_A 151 LPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAER 229 (359)
T ss_dssp CCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHH
T ss_pred CCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH
Confidence 99999999999 7888889999998554 8999999999999999999999999999 99 99999999999999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChH--HHHHHHHHhccCCceEEEecCCCCCCeeecchheeeec
Q 017460 230 FGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTG--MITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSG 306 (371)
Q Consensus 230 lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~--~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~ 306 (371)
+|+++++|++ +. +.+.+++++++ ++|+|||++|+.. .++.++++ ++ |+++.+|..... .++.. ..+.++
T Consensus 230 lGa~~vi~~~--~~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~g~~~~~-~~~~~-~~~~~~ 301 (359)
T 1h2b_A 230 LGADHVVDAR--RD-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIVGYGGEL-RFPTI-RVISSE 301 (359)
T ss_dssp TTCSEEEETT--SC-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEECCCSSCC-CCCHH-HHHHTT
T ss_pred hCCCEEEecc--ch-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEEeCCCCC-CCCHH-HHHhCC
Confidence 9999999987 44 88889999988 9999999999875 77888877 76 999999976542 23222 123568
Q ss_pred cEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 307 RTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 307 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+++.++.... ..++.++++++.++++++ .+ ++|+++++++||+.+.+++.. |+||++
T Consensus 302 ~~i~g~~~~~---~~~~~~~~~l~~~g~l~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 359 (359)
T 1h2b_A 302 VSFEGSLVGN---YVELHELVTLALQGKVRV--EV-DIHKLDEINDVLERLEKGEVLGRAVLIP 359 (359)
T ss_dssp CEEEECCSCC---HHHHHHHHHHHHTTSCCC--CE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred cEEEEecCCC---HHHHHHHHHHHHcCCCcc--eE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence 9999876543 357899999999999764 46 999999999999999988876 999874
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-54 Score=402.04 Aligned_cols=327 Identities=25% Similarity=0.411 Sum_probs=285.7
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-------C------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-------Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-------~------~~G~V~~~G~~v~~~~ 79 (371)
|||+++++++++++++++|.|+|++|||+|||.+++||++|++++.|.++ + ++|+|+++|++|++|+
T Consensus 1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (343)
T 2dq4_A 1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ 80 (343)
T ss_dssp CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence 79999999987799999999999999999999999999999999988532 1 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||||++.+..+|+.|.+|++|++++|.+... .|.. .+ |+|+||++++++.++++|+++
T Consensus 81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP~~~ 139 (343)
T 2dq4_A 81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI--LGVD-RD------------------GGFAEYVVVPAENAWVNPKDL 139 (343)
T ss_dssp TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEEEGGGEEEECTTS
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCCCcce--ecCC-CC------------------CcceeEEEEchHHeEECCCCC
Confidence 99999999999999999999999999997654 2322 22 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++|+++. ++.+|++++.+.+++ +|++|||+|+|++|++++|+|+++|+++|+++++++++++.++++ ++++++++
T Consensus 140 ~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~ 216 (343)
T 2dq4_A 140 PFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPL 216 (343)
T ss_dssp CHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTT
T ss_pred CHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcC
Confidence 999999884 788999998547889 999999999999999999999999987899999999999999999 99999987
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-h-eeeeccEEEecccCCC
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-G-LFLSGRTLKGSLFGGW 317 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~-~~~~~~~i~g~~~~~~ 317 (371)
+.++.+.+++++++++|+|||++|....++.++++++++ |+++.+|.... ...++. . .+.+++++.|+....
T Consensus 217 --~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~~i~g~~~~~- 290 (343)
T 2dq4_A 217 --EEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSD--PIRFDLAGELVMRGITAFGIAGRR- 290 (343)
T ss_dssp --TSCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSS--CEEECHHHHTGGGTCEEEECCSCC-
T ss_pred --ccCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC--CceeCcHHHHHhCceEEEEeecCC-
Confidence 567888999888339999999999867899999999997 99999997643 233433 2 235689999886541
Q ss_pred CcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeCC
Q 017460 318 KPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMP 370 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~~ 370 (371)
...++.++++++.++++++.++++++|+++++++||+.+.+++..|++|+++
T Consensus 291 -~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~~ 342 (343)
T 2dq4_A 291 -LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDPK 342 (343)
T ss_dssp -TTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEETT
T ss_pred -CHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEeeC
Confidence 1357899999999999988888999999999999999998776679999875
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-53 Score=398.23 Aligned_cols=327 Identities=25% Similarity=0.331 Sum_probs=286.0
Q ss_pred eeEEEEecC-CCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGA-GQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~-~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||++++.. +..+++.++|.|+|++|||||||.|+|||++|+++++|.++. ++|+|+++|++|+.|++||
T Consensus 1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~~~p~i~GhE~aG~V~~vG~~V~~~~~Gd 80 (348)
T 4eez_A 1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGNKAGTVLGHEGIGIVKEIGADVSSLQVGD 80 (348)
T ss_dssp CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCCCTTCBCCSEEEEEEEEECTTCCSCCTTC
T ss_pred CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCCCCCcccceeEEEEEEEECceeeecccCC
Confidence 899998654 345999999999999999999999999999999999987653 6999999999999999999
Q ss_pred EEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 83 HVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 83 ~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
||++.+. ..|+.|.+|..+..+.|......... .+ |+|+||+.++++.++++|+++++
T Consensus 81 rV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~------------------G~~ae~~~~~~~~~~~iP~~~~~ 139 (348)
T 4eez_A 81 RVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYS---VD------------------GGMAEEAIVVADYAVKVPDGLDP 139 (348)
T ss_dssp EEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTT---BC------------------CSSBSEEEEEGGGSCBCCTTSCH
T ss_pred eEeecccccccCccccccCCcccccccccccccc---cC------------------CcceeeccccccceeecCCCCCH
Confidence 9988775 56899999999999999987753222 22 48999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
++|+++++++.|||+++ +.+++++|++|||+|+|++|.+++|+|+.++..+|++++++++|+++++++|+++++|++
T Consensus 140 ~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~-- 216 (348)
T 4eez_A 140 IEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSG-- 216 (348)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC---
T ss_pred HHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCC--
Confidence 99999999999999987 678899999999999999999999999987544999999999999999999999999998
Q ss_pred CchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcC
Q 017460 242 NEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPK 320 (371)
Q Consensus 242 ~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~ 320 (371)
+.++.+.+++++++ ++|++++++++...+..++++++++ |+++.+|.......++.... +.+++++.|+..+. +
T Consensus 217 ~~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~gs~~~~---~ 291 (348)
T 4eez_A 217 DVNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPNTEMTLSVPTV-VFDGVEVAGSLVGT---R 291 (348)
T ss_dssp CCCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCSCEEEECHHHH-HHSCCEEEECCSCC---H
T ss_pred CCCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccCCCCccCHHHH-HhCCeEEEEEecCC---H
Confidence 67899999999999 9999999999988899999999997 99999997655333433322 35689999987654 4
Q ss_pred CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 321 TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
.++.++++++.+|++++ + +++|+|+++++||+.+++++.. |+||++++
T Consensus 292 ~~~~~~~~l~~~g~i~p--~-~~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk 340 (348)
T 4eez_A 292 LDLAEAFQFGAEGKVKP--I-VATRKLEEINDIIDEMKAGKIEGRMVIDFTK 340 (348)
T ss_dssp HHHHHHHHHHHTTSCCC--C-EEEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred HHHHHHHHHHHcCCCEE--E-EEEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence 57999999999999764 3 4899999999999999999887 99999874
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-54 Score=399.40 Aligned_cols=329 Identities=23% Similarity=0.373 Sum_probs=275.0
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~ 79 (371)
+++|||+++++++++++++++|.|+|+++||+|||.+++||++|++++.|.++. ++|+|+++|++|++|+
T Consensus 2 ~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~ 81 (348)
T 3two_A 2 RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFK 81 (348)
T ss_dssp CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred ceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCC
Confidence 378999999999888999999999999999999999999999999999987542 6999999999999999
Q ss_pred CCCEEEeee-cCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 80 EGEHVLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 80 ~Gd~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
+||||++.+ ..+|+.|.+|+++++++|. .... |+. .... .+ ......|+|+||++++++.++++|++
T Consensus 82 vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~~--~~~-~~~~----~~----~~~~~~G~~aey~~v~~~~~~~iP~~ 149 (348)
T 3two_A 82 IGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVVF--TYD-CLDS----FH----DNEPHMGGYSNNIVVDENYVISVDKN 149 (348)
T ss_dssp TTCEEEECSEEECCSCSHHHHTTCGGGCT-TCEE--SSS-SEEG----GG----TTEECCCSSBSEEEEEGGGCEECCTT
T ss_pred CCCEEEEeCCcCCCCCChhHhCCCcccCc-cccc--ccc-cccc----cc----cCCcCCccccceEEechhhEEECCCC
Confidence 999998865 4789999999999999998 3321 111 1100 00 00011259999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+++++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+++|+ +|++++++++|+++++++|+++++ .
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~ 226 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-T 226 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-S
T ss_pred CCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-C
Confidence 99999999999999999998 56699999999999999999999999999999 999999999999999999999988 3
Q ss_pred CCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC-CCCe-eecchheeeeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK-LKPE-VAAHYGLFLSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~-~~~~-~~~~~~~~~~~~~i~g~~~~~ 316 (371)
+ .+.+ ..++|+|||++|+...++.++++++++ |+++.+|... .... ++.....+.+++++.|+..+.
T Consensus 227 ~--~~~~--------~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 295 (348)
T 3two_A 227 D--PKQC--------KEELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGG 295 (348)
T ss_dssp S--GGGC--------CSCEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCC
T ss_pred C--HHHH--------hcCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCC
Confidence 2 2111 118999999999876899999999997 9999999765 3222 332222115689999987654
Q ss_pred CCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 317 WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
..++.++++++.++++++. + ++|+++++++||+.+.+++.. |+||+++
T Consensus 296 ---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~~ 344 (348)
T 3two_A 296 ---IKETQEMVDFSIKHNIYPE--I-DLILGKDIDTAYHNLTHGKAKFRYVIDMK 344 (348)
T ss_dssp ---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCCSEEEEEGG
T ss_pred ---HHHHHHHHHHHHhCCCCce--E-EEEEHHHHHHHHHHHHcCCCceEEEEecC
Confidence 3468999999999998763 3 899999999999999999887 9999876
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-53 Score=392.15 Aligned_cols=324 Identities=28% Similarity=0.416 Sum_probs=281.8
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~~G 81 (371)
|||+++++++.+++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|++|++|++|
T Consensus 1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG 80 (339)
T 1rjw_A 1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG 80 (339)
T ss_dssp CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence 89999999986699999999999999999999999999999999988643 1 699999999999999999
Q ss_pred CEEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 82 EHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 82 d~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
|||++.+. ..|+.|.+|+++++++|.+... .|+. .+ |+|+||++++++.++++|++++
T Consensus 81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~~P~~~~ 139 (339)
T 1rjw_A 81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN--AGYS-VD------------------GGYAEYCRAAADYVVKIPDNLS 139 (339)
T ss_dssp CEEEECSEEECCSCSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEEEGGGCEECCTTSC
T ss_pred CEEEEecCCCCCCCCchhhCcCcccCCCcce--eecC-CC------------------CcceeeEEechHHEEECCCCCC
Confidence 99998764 4699999999999999987654 2322 22 4899999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
+++||++++++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++++|++.++|++
T Consensus 140 ~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~- 216 (339)
T 1rjw_A 140 FEEAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPL- 216 (339)
T ss_dssp HHHHGGGGTHHHHHHHHHH-HHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTT-
T ss_pred HHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCC-
Confidence 9999999999999999984 4589999999999998899999999999999 999999999999999999999999987
Q ss_pred CCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccCCCCc
Q 017460 241 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 241 ~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~ 319 (371)
+.++.+.+++.+ +++|+|||++|....++.++++++++ |+++.+|.... ...++... +.+++++.++....
T Consensus 217 -~~~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~g~~~~~--- 288 (339)
T 1rjw_A 217 -KEDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE--EMPIPIFDTVLNGIKIIGSIVGT--- 288 (339)
T ss_dssp -TSCHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS--EEEEEHHHHHHTTCEEEECCSCC---
T ss_pred -CccHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCC--CCccCHHHHHhCCcEEEEeccCC---
Confidence 567888888887 68999999999877899999999997 99999987654 23343332 24688998876543
Q ss_pred CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 320 KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
.+++.++++++.++++++. +++|+++++++||+.+.+++.. |++|++++
T Consensus 289 ~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 338 (339)
T 1rjw_A 289 RKDLQEALQFAAEGKVKTI---IEVQPLEKINEVFDRMLKGQINGRVVLTLED 338 (339)
T ss_dssp HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCcc---EEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 3468999999999998764 4799999999999999988766 99998864
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-53 Score=397.56 Aligned_cols=341 Identities=23% Similarity=0.302 Sum_probs=285.6
Q ss_pred CccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCC
Q 017460 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVT 76 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~ 76 (371)
+.+..+|||++++++++.++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++| +|+
T Consensus 12 ~~~~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~ 90 (380)
T 1vj0_A 12 HMMGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEK 90 (380)
T ss_dssp --CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCC
T ss_pred hHhhhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccc
Confidence 35678899999999985599999999999999999999999999999999998653 1 699999999 999
Q ss_pred ------CCCCCCEEEeeecCCCCCCcccc-CCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEe-e
Q 017460 77 ------EFNEGEHVLTVFIGECKTCRQCK-SDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVV-H 148 (371)
Q Consensus 77 ------~~~~Gd~V~~~~~~~~~~~~~c~-~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~-~ 148 (371)
+|++||||++.+..+|+.|.+|+ ++++++|.+... .|.....+ ..+...|+|+||+++ +
T Consensus 91 ~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~--~g~~~~~~-----------~~~~~~G~~aey~~v~~ 157 (380)
T 1vj0_A 91 RDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV--YGINRGCS-----------EYPHLRGCYSSHIVLDP 157 (380)
T ss_dssp BCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE--TTTTCCSS-----------STTCCCSSSBSEEEECT
T ss_pred ccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce--eccccccC-----------CCCCCCccccceEEEcc
Confidence 99999999999999999999999 999999987643 22100000 000012589999999 9
Q ss_pred CCceEECCCCCChh-hhhhcchhhhhHHhHhhhhcC-CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHH
Q 017460 149 SGCAVKVSSIAPLE-KICLLSCGLSAGLGAAWNVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226 (371)
Q Consensus 149 ~~~~~~~P~~~~~~-~aa~~~~~~~~a~~~l~~~~~-~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~ 226 (371)
++.++++|++++++ +|++++ +++|||+++ +.++ +++|++|||+|+|++|++++|+|+++|+.+|++++++++|++.
T Consensus 158 ~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~ 235 (380)
T 1vj0_A 158 ETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKL 235 (380)
T ss_dssp TCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHH
T ss_pred cceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHH
Confidence 99999999999999 777777 999999998 6788 9999999999999999999999999994499999999999999
Q ss_pred HHHcCCceEeCCCC-CCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC-CCCeeecchh--
Q 017460 227 AKAFGVTEFLNPND-NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK-LKPEVAAHYG-- 301 (371)
Q Consensus 227 ~~~lg~~~vi~~~~-~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~-- 301 (371)
++++|++++++++. .+.++.+.+++++++ ++|+|||++|....++.++++++++ |+++.+|... . ....++..
T Consensus 236 ~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~ 313 (380)
T 1vj0_A 236 AEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQ-DPVPFKVYEW 313 (380)
T ss_dssp HHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCC-CCEEECHHHH
T ss_pred HHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCC-CCeeEchHHH
Confidence 99999999998741 124678889999988 9999999999866899999999997 9999999865 3 12334333
Q ss_pred eeeeccEEEecccCCCCcCCCHHHHHHHHHc--CCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeCC
Q 017460 302 LFLSGRTLKGSLFGGWKPKTDLPSLVNRYLK--KEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMP 370 (371)
Q Consensus 302 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~~ 370 (371)
.+.+++++.|+.... .+++.++++++.+ +++ +++++++|+|+++++||+.+.+++..|+||+++
T Consensus 314 ~~~~~~~i~g~~~~~---~~~~~~~~~l~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvl~~~ 379 (380)
T 1vj0_A 314 LVLKNATFKGIWVSD---TSHFVKTVSITSRNYQLL--SKLITHRLPLKEANKALELMESREALKVILYPE 379 (380)
T ss_dssp TTTTTCEEEECCCCC---HHHHHHHHHHHHTCHHHH--GGGCCEEEEGGGHHHHHHHHHHTSCSCEEEECC
T ss_pred HHhCCeEEEEeecCC---HHHHHHHHHHHHhhcCCe--eeEEEEEEeHHHHHHHHHHHhcCCCceEEEEeC
Confidence 235689999987543 3578999999999 887 556789999999999999998775449999875
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=389.03 Aligned_cols=326 Identities=21% Similarity=0.354 Sum_probs=283.7
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~ 79 (371)
|||+++++++.+ ++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|++|++|+
T Consensus 1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (343)
T 2eih_A 1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA 80 (343)
T ss_dssp CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence 799999999875 89999999999999999999999999999999988543 1 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||||++.+..+|+.|.+|+++++++|.+... .|+. .+ |+|+||++++++.++++|+++
T Consensus 81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~--~G~~-~~------------------G~~aey~~v~~~~~~~~P~~~ 139 (343)
T 2eih_A 81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI--LGEH-RH------------------GTYAEYVVLPEANLAPKPKNL 139 (343)
T ss_dssp TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE--TTTS-SC------------------CSSBSEEEEEGGGEEECCTTS
T ss_pred CCCEEEECCCCCcccchhhccCcccccccccc--cCcC-CC------------------ccceeEEEeChHHeEECCCCC
Confidence 99999999999999999999999999997664 2332 22 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++++|+++++++.|||+++.+.+++++|++|||+|+ |++|++++|++++.|+ +|+++++++++++.++++|++.++|+
T Consensus 140 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~ 218 (343)
T 2eih_A 140 SFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNY 218 (343)
T ss_dssp CHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred CHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcC
Confidence 999999999999999999866678999999999997 9999999999999999 99999999999999999999999988
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC-eeecchheeeeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP-EVAAHYGLFLSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~i~g~~~~~ 316 (371)
+ +.++.+.+.+.+++ ++|+|||++|. ..++.++++++++ |+++.+|...... .++... .+.+++++.|+....
T Consensus 219 ~--~~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~~~ 293 (343)
T 2eih_A 219 T--HPDWPKEVRRLTGGKGADKVVDHTGA-LYFEGVIKATANG-GRIAIAGASSGYEGTLPFAH-VFYRQLSILGSTMAS 293 (343)
T ss_dssp T--STTHHHHHHHHTTTTCEEEEEESSCS-SSHHHHHHHEEEE-EEEEESSCCCSCCCCCCTTH-HHHTTCEEEECCSCC
T ss_pred C--cccHHHHHHHHhCCCCceEEEECCCH-HHHHHHHHhhccC-CEEEEEecCCCCcCccCHHH-HHhCCcEEEEecCcc
Confidence 7 55788888888877 99999999994 5789999999997 9999999765421 233222 224688998876432
Q ss_pred CCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 317 WKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
.+++.++++++.+++++ ++++++|+|+++++||+.+.+++.. |++|+++
T Consensus 294 ---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 343 (343)
T 2eih_A 294 ---KSRLFPILRFVEEGKLK--PVVGQVLPLEAAAEGHRLLEERRVFGKVVLQVG 343 (343)
T ss_dssp ---GGGHHHHHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEECC
T ss_pred ---HHHHHHHHHHHHcCCCC--CceeEEeeHHHHHHHHHHHHcCCCceEEEEecC
Confidence 45799999999999875 4578999999999999999888766 9999863
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-52 Score=387.06 Aligned_cols=331 Identities=21% Similarity=0.377 Sum_probs=284.9
Q ss_pred cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCC
Q 017460 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~ 77 (371)
.|.+|||+++++++.+++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|++|++
T Consensus 2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~ 81 (347)
T 2hcy_A 2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG 81 (347)
T ss_dssp CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence 467899999999986799999999999999999999999999999999988653 1 69999999999999
Q ss_pred CCCCCEEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 78 FNEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 78 ~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
|++||||++.+. ..|+.|.+|+++++++|.+... .|.. .+ |+|+||++++++.++++|
T Consensus 82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~~v~~~~~~~iP 140 (347)
T 2hcy_A 82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL--SGYT-HD------------------GSFQQYATADAVQAAHIP 140 (347)
T ss_dssp CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEEETTTSEEEC
T ss_pred CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc--cccC-CC------------------CcceeEEEeccccEEECC
Confidence 999999998764 4699999999999999987654 2322 22 489999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
+++++++|+++++++.|||+++ +..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.+
T Consensus 141 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~ 218 (347)
T 2hcy_A 141 QGTDLAQVAPILCAGITVYKAL-KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVF 218 (347)
T ss_dssp TTCCHHHHGGGGTHHHHHHHHH-HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHhhhHHHHHHHH-HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceE
Confidence 9999999999999999999998 4568999999999997 9999999999999999 99999999999999999999988
Q ss_pred eCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEeccc
Q 017460 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLF 314 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~ 314 (371)
+|+.+ ..++.+.+++.+++++|++||++|....++.++++++++ |+++.+|.... ....++... +.+++++.|+..
T Consensus 219 ~d~~~-~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~ 295 (347)
T 2hcy_A 219 IDFTK-EKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAG-AKCCSDVFNQVVKSISIVGSYV 295 (347)
T ss_dssp EETTT-CSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCTT-CEEEEEHHHHHHTTCEEEECCC
T ss_pred EecCc-cHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCCC-CCCCCCHHHHhhCCcEEEEccC
Confidence 88752 357888888887668999999999877889999999997 99999998653 233443332 246889998765
Q ss_pred CCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 315 GGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
.. ..++.++++++.++++++. +++|+++++++||+.+.+++.. |+||++++
T Consensus 296 ~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 347 (347)
T 2hcy_A 296 GN---RADTREALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK 347 (347)
T ss_dssp CC---HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred CC---HHHHHHHHHHHHhCCCccc---eEEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence 43 3468899999999998764 4799999999999999888766 99999864
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=389.35 Aligned_cols=322 Identities=24% Similarity=0.365 Sum_probs=256.5
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------C------eEEEEEeeCCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------~------~~G~V~~~G~~v~~ 77 (371)
|.+|||+++++++++++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|++ ++
T Consensus 1 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~ 79 (344)
T 2h6e_A 1 MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AK 79 (344)
T ss_dssp CEEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CC
T ss_pred CceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CC
Confidence 35799999999986799999999999999999999999999999999988654 1 69999999999 99
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEee-CCceEECC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKVS 156 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~-~~~~~~~P 156 (371)
|++||||+..+..+|+.|.+|+++++++|.+... .|.. .+ |+|+||++++ ++.++++
T Consensus 80 ~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~--~G~~-~~------------------G~~aey~~v~~~~~~~~i- 137 (344)
T 2h6e_A 80 VKKGDNVVVYATWGDLTCRYCREGKFNICKNQII--PGQT-TN------------------GGFSEYMLVKSSRWLVKL- 137 (344)
T ss_dssp CCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC--BTTT-BC------------------CSSBSEEEESCGGGEEEE-
T ss_pred CCCCCEEEECCCCCCCCChhhhCCCcccCCCccc--cccc-cC------------------CcceeeEEecCcccEEEe-
Confidence 9999999988889999999999999999987643 3322 22 4899999999 9999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhh----cCCCCCCEEEEEccChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHHc
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNV----ADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~----~~~~~~~~VlI~Gag~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~l 230 (371)
+++++++||.+++++.|||+++.+. +++ +|++|||+|+|++|++++|+|+++ |+ +|++++++++|++.++++
T Consensus 138 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l 215 (344)
T 2h6e_A 138 NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL 215 (344)
T ss_dssp SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh
Confidence 9999999999999999999998543 288 999999999999999999999999 99 899999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccE
Q 017460 231 GVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRT 308 (371)
Q Consensus 231 g~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~ 308 (371)
|++++++++ + . .+.+.+++++ ++|+|||++|....++.++++++++ |+++.+|..... ..++... +.++++
T Consensus 216 Ga~~vi~~~--~-~-~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~~~ 288 (344)
T 2h6e_A 216 GADYVSEMK--D-A-ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEGKR--VSLEAFDTAVWNKK 288 (344)
T ss_dssp TCSEEECHH--H-H-HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSSC--CCCCHHHHHHTTCE
T ss_pred CCCEEeccc--c-c-hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEeCCCCCC--cccCHHHHhhCCcE
Confidence 999999874 2 0 2334566667 9999999999876899999999997 999999976542 2333322 246889
Q ss_pred EEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 309 LKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 309 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+.++.... .+++.++++++.++++++. + ++|+|+++++||+.+.+++.. |+||++
T Consensus 289 i~g~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 344 (344)
T 2h6e_A 289 LLGSNYGS---LNDLEDVVRLSESGKIKPY--I-IKVPLDDINKAFTNLDEGRVDGRQVITP 344 (344)
T ss_dssp EEECCSCC---HHHHHHHHHHHHTTSSCCC--E-EEECC----------------CEEEECC
T ss_pred EEEEecCC---HHHHHHHHHHHHcCCCCcc--e-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence 99876543 3578999999999987644 6 999999999999999888766 999864
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-53 Score=395.09 Aligned_cols=325 Identities=20% Similarity=0.265 Sum_probs=275.4
Q ss_pred ceeeeEEEEecCCCCeEEEE--eecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCC-
Q 017460 10 VITCKAAVAWGAGQPLVVEE--VEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVT- 76 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~--~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~- 76 (371)
+.+|||+++++++.++++++ +|.|+|+++||+|||.+++||++|+++++|.++ + ++|+|+++|++|+
T Consensus 4 p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~~ 83 (360)
T 1piw_A 4 PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSNS 83 (360)
T ss_dssp TTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCCS
T ss_pred ChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCCC
Confidence 45799999999886799999 999999999999999999999999999988643 1 6999999999999
Q ss_pred CCCCCCEEEee-ecCCCCCCccccCCCCCCcccc--ccccc---ccccCCCccceeccCcccccccCccceeeEEEeeCC
Q 017460 77 EFNEGEHVLTV-FIGECKTCRQCKSDKSNTCEVL--GLERR---GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 150 (371)
Q Consensus 77 ~~~~Gd~V~~~-~~~~~~~~~~c~~~~~~~c~~~--~~~~~---g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~ 150 (371)
+|++||||++. +..+|+.|.+|+++++++|.+. .+... |.. . .|+|+||++++++
T Consensus 84 ~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~------------------~G~~aey~~v~~~ 144 (360)
T 1piw_A 84 GLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYV-S------------------QGGYANYVRVHEH 144 (360)
T ss_dssp SCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCB-C------------------CCSSBSEEEEEGG
T ss_pred CCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCcc-C------------------CCcceeEEEEchh
Confidence 99999999654 4578999999999999999875 11000 211 1 2589999999999
Q ss_pred ceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 151 CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 151 ~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
.++++|+++++++||++++++.|||+++. .+++++|++|||+|+|++|++++|+|+++|+ +|+++++++++++.++++
T Consensus 145 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l 222 (360)
T 1piw_A 145 FVVPIPENIPSHLAAPLLCGGLTVYSPLV-RNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM 222 (360)
T ss_dssp GEEECCTTSCHHHHGGGGTHHHHHHHHHH-HTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH
T ss_pred heEECCCCCCHHHhhhhhhhHHHHHHHHH-HcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc
Confidence 99999999999999999999999999984 4899999999999999999999999999999 899999999999999999
Q ss_pred CCceEeCCCCCCc-hHHHHHHHHhCCCccEEEEcCCC--hHHHHHHHHHhccCCceEEEecCCCCCC-eeecchheeeec
Q 017460 231 GVTEFLNPNDNNE-PVQQVIKRITDGGADYSFECIGD--TGMITTALQSCCDGWGLAVTLGVPKLKP-EVAAHYGLFLSG 306 (371)
Q Consensus 231 g~~~vi~~~~~~~-~~~~~v~~~~~gg~dvVid~~g~--~~~l~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~ 306 (371)
|++++++++ +. ++.+.+. +++|+|||++|. ...++.++++++++ |+++.+|.... . .++... .+.++
T Consensus 223 Ga~~v~~~~--~~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~-~~~~~ 293 (360)
T 1piw_A 223 GADHYIATL--EEGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ-HEMLSLKP-YGLKA 293 (360)
T ss_dssp TCSEEEEGG--GTSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS-SCCEEECG-GGCBS
T ss_pred CCCEEEcCc--CchHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC-ccccCHHH-HHhCC
Confidence 999999886 33 5544433 489999999998 56788999999997 99999997654 2 333322 23568
Q ss_pred cEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchh--HHHHHHHHHcCCee-eEEEeCC
Q 017460 307 RTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFED--INQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 307 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
+++.++.... ..++.++++++.++++++. + ++|++++ +++||+.+.+++.. |+||+++
T Consensus 294 ~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~ 354 (360)
T 1piw_A 294 VSISYSALGS---IKELNQLLKLVSEKDIKIW--V-ETLPVGEAGVHEAFERMEKGDVRYRFTLVGY 354 (360)
T ss_dssp CEEEECCCCC---HHHHHHHHHHHHHTTCCCC--E-EEEESSHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred eEEEEEecCC---HHHHHHHHHHHHhCCCcce--E-EEEeccHhHHHHHHHHHHCCCCceEEEEecC
Confidence 8998876543 3568999999999987654 6 8999999 99999999888876 9999875
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-53 Score=399.52 Aligned_cols=334 Identities=21% Similarity=0.273 Sum_probs=281.7
Q ss_pred eeeEEEEecCCCCeEEEEeecCCC-CC-----CcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCC
Q 017460 12 TCKAAVAWGAGQPLVVEEVEVNPP-QP-----EEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVT 76 (371)
Q Consensus 12 ~~~a~~~~~~~~~l~~~~~~~p~~-~~-----~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~ 76 (371)
+|||+++++++. ++++++|.|++ ++ +||+|||.+++||++|+++++|.++. ++|+|+++|++|+
T Consensus 2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~~~~p~v~GhE~~G~V~~vG~~v~ 80 (398)
T 2dph_A 2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPKGHVLGHEITGEVVEKGSDVE 80 (398)
T ss_dssp CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSCCCTTCBCCCCEEEEEEEECTTCC
T ss_pred ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCcccCCceEEEEEEECCCCC
Confidence 699999999875 99999999998 68 99999999999999999999986421 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCccccccc------ccccccCCCccceeccCcccccccCccceeeEEEeeCC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE------RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 150 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~------~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~ 150 (371)
+|++||||++.+..+|+.|.+|+++++++|.+.... ..|+. .. ...|+|+||++++++
T Consensus 81 ~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~-~~---------------~~~G~~aey~~v~~~ 144 (398)
T 2dph_A 81 LMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFD-LK---------------GWSGGQAEYVLVPYA 144 (398)
T ss_dssp SCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTT-BS---------------SCCCSSBSEEEESSH
T ss_pred CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccc-cC---------------CCCceeeeeEEeccc
Confidence 999999999999999999999999999999872110 11110 00 012589999999987
Q ss_pred --ceEECCCCCChhh----hhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhH
Q 017460 151 --CAVKVSSIAPLEK----ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC 224 (371)
Q Consensus 151 --~~~~~P~~~~~~~----aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~ 224 (371)
.++++|+++++++ |++++++++|||+++ +.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|+
T Consensus 145 ~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~ 223 (398)
T 2dph_A 145 DYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERL 223 (398)
T ss_dssp HHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHH
T ss_pred cCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 8999999999998 888988999999998 788999999999999999999999999999988899999999999
Q ss_pred HHHHHcCCceEeCCCCCCchH-HHHHHHHhCC-CccEEEEcCCChH--------------HHHHHHHHhccCCceEEEec
Q 017460 225 EKAKAFGVTEFLNPNDNNEPV-QQVIKRITDG-GADYSFECIGDTG--------------MITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 225 ~~~~~lg~~~vi~~~~~~~~~-~~~v~~~~~g-g~dvVid~~g~~~--------------~l~~~~~~l~~~~G~~v~~g 288 (371)
++++++|++ +++++ ..++ .+.+++++++ ++|+|||++|... .++.++++++++ |+++.+|
T Consensus 224 ~~a~~lGa~-~i~~~--~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-G~iv~~G 299 (398)
T 2dph_A 224 KLLSDAGFE-TIDLR--NSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGIPG 299 (398)
T ss_dssp HHHHTTTCE-EEETT--SSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE-EEEECCS
T ss_pred HHHHHcCCc-EEcCC--CcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC-CEEEEec
Confidence 999999996 88886 4454 8889999988 9999999999752 689999999997 9999998
Q ss_pred CCCC-----------CCeeecchhe-eeeccEEEecccCCCCcCCCHHHHHHHHHcCCCC--CCcceeeeecchhHHHHH
Q 017460 289 VPKL-----------KPEVAAHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFM--VDEFITHNLLFEDINQAF 354 (371)
Q Consensus 289 ~~~~-----------~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~a~ 354 (371)
.... .....++... +.+++++.++.... ..++.++++++.+++++ +.++++++|+|+++++||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~ 376 (398)
T 2dph_A 300 IYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPV---TNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGY 376 (398)
T ss_dssp CCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCCG---GGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHH
T ss_pred cccccccccccccccCCcccccHHHHhhcCCEEEEeccCc---HHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHH
Confidence 7621 1223333322 34688888765332 45789999999999998 777788999999999999
Q ss_pred HHHHcCCeeeEEEeCC
Q 017460 355 NLMKEGKCLRSVIHMP 370 (371)
Q Consensus 355 ~~~~~~~~~kvvi~~~ 370 (371)
+.+.+++..|+||+++
T Consensus 377 ~~~~~~~~gKvvv~~~ 392 (398)
T 2dph_A 377 AKFDKGSPAKFVIDPH 392 (398)
T ss_dssp HHHHTTCSCEEEECTT
T ss_pred HHHhcCCceEEEEecC
Confidence 9998876679999875
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-52 Score=395.61 Aligned_cols=328 Identities=23% Similarity=0.317 Sum_probs=275.2
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCC-CCCCcEEEEEeeecCCcchhhhhcCCC------------CC-----eEEEEEee
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNP-PQPEEIRIKVVCTSLCRSDITAWETQW------------PQ-----CCRIVESV 71 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~-~~~~evlV~v~~~~i~~~D~~~~~g~~------------~~-----~~G~V~~~ 71 (371)
+.+|++.++.+++. ++++++|.|+ |+++||+|||.+++||++|++++.|.. |. ++|+|+++
T Consensus 28 ~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~v 106 (404)
T 3ip1_A 28 KLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEA 106 (404)
T ss_dssp TBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEE
T ss_pred hhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEE
Confidence 34444444444443 8899999999 999999999999999999999987631 11 69999999
Q ss_pred CCCC------CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEE
Q 017460 72 GPGV------TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYT 145 (371)
Q Consensus 72 G~~v------~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~ 145 (371)
|++| ++|++||||++.+..+|+.|.+|+++++++|.+... .|+. .+ |+|+||+
T Consensus 107 G~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~--~g~~-~~------------------G~~aey~ 165 (404)
T 3ip1_A 107 GPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE--LGFN-VD------------------GAFAEYV 165 (404)
T ss_dssp CTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEE
T ss_pred CCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc--cCCC-CC------------------CCCcceE
Confidence 9999 889999999999999999999999999999998764 3332 22 4899999
Q ss_pred EeeCCceEECCCCCC------hhhhhhcchhhhhHHhHhhhh-cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc
Q 017460 146 VVHSGCAVKVSSIAP------LEKICLLSCGLSAGLGAAWNV-ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 146 ~~~~~~~~~~P~~~~------~~~aa~~~~~~~~a~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~ 218 (371)
+++++.++++|++++ ..++++++.+++|||+++... +++++|++|||+|+|++|++++|+|+++|+++|++++
T Consensus 166 ~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~ 245 (404)
T 3ip1_A 166 KVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSE 245 (404)
T ss_dssp EEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 999999999999886 455888888999999998644 4899999999999999999999999999998999999
Q ss_pred CChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCCh-HHHHHHHHHh----ccCCceEEEecCCCC
Q 017460 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDT-GMITTALQSC----CDGWGLAVTLGVPKL 292 (371)
Q Consensus 219 ~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~-~~l~~~~~~l----~~~~G~~v~~g~~~~ 292 (371)
++++|+++++++|++++++++ ..++.+.+++++++ ++|+|||++|+. ..+..+++++ +++ |+++.+|....
T Consensus 246 ~~~~~~~~~~~lGa~~vi~~~--~~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G~iv~~G~~~~ 322 (404)
T 3ip1_A 246 PSEVRRNLAKELGADHVIDPT--KENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-ATVAIVARADA 322 (404)
T ss_dssp SCHHHHHHHHHHTCSEEECTT--TSCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-CEEEECSCCCS
T ss_pred CCHHHHHHHHHcCCCEEEcCC--CCCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-cEEEEeCCCCC
Confidence 999999999999999999997 67899999999998 999999999986 3566777777 997 99999998765
Q ss_pred CCeeecchheeeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeC
Q 017460 293 KPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHM 369 (371)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~ 369 (371)
...++.... +.++.++.|+.... ...++.++++++.+| +++.++++++|+|+++++||+.+..+ |+||++
T Consensus 323 ~~~~~~~~~-~~~~~~i~g~~~~~--~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~~G---Kvvl~~ 392 (404)
T 3ip1_A 323 KIPLTGEVF-QVRRAQIVGSQGHS--GHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTD---KSLVKV 392 (404)
T ss_dssp CEEECHHHH-HHTTCEEEECCCCC--STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTTTC---TTCSCE
T ss_pred CCcccHHHH-hccceEEEEecCCC--chHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHhCC---cEEEec
Confidence 333333222 24688999886432 135799999999999 88888899999999999999998733 666554
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-52 Score=391.55 Aligned_cols=328 Identities=22% Similarity=0.353 Sum_probs=270.9
Q ss_pred ccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCC
Q 017460 8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 8 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~ 77 (371)
...++|+|+++.+++++++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|++|++
T Consensus 18 ~~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~ 97 (369)
T 1uuf_A 18 KAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEK 97 (369)
T ss_dssp -----CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCS
T ss_pred hcCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCC
Confidence 3468899999988877799999999999999999999999999999999988542 1 69999999999999
Q ss_pred CCCCCEEEeeec-CCCCCCccccCCCCCCccccccccc------ccccCCCccceeccCcccccccCccceeeEEEeeCC
Q 017460 78 FNEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERR------GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 150 (371)
Q Consensus 78 ~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~------g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~ 150 (371)
|++||||++.+. ..|+.|.+|+++++++|.+...... |.. . .|+|+||++++++
T Consensus 98 ~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~-~------------------~G~~aeyv~v~~~ 158 (369)
T 1uuf_A 98 YAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGH-T------------------LGGYSQQIVVHER 158 (369)
T ss_dssp CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSB-C------------------CCSSBSEEEEEGG
T ss_pred CCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCC-C------------------CCcccceEEEcch
Confidence 999999998775 5699999999999999987531110 111 1 2589999999999
Q ss_pred ceEECCCC-CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 151 CAVKVSSI-APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 151 ~~~~~P~~-~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
.++++|++ +++++||++++++.|||+++. ..++++|++|||+|+|++|++++|+|+++|+ +|+++++++++++.+++
T Consensus 159 ~~~~~P~~~ls~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 159 YVLRIRHPQEQLAAVAPLLCAGITTYSPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA 236 (369)
T ss_dssp GCEECCSCGGGHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred hEEECCCCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 99999999 999999999999999999984 4689999999999999999999999999999 89999999999999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccE
Q 017460 230 FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRT 308 (371)
Q Consensus 230 lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~ 308 (371)
+|++.+++++ +.++. .++. +++|+|||++|....++.++++++++ |+++.+|...... ..++... +.++++
T Consensus 237 lGa~~vi~~~--~~~~~---~~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~-~~~~~~~~~~~~~~ 308 (369)
T 1uuf_A 237 LGADEVVNSR--NADEM---AAHL-KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPH-KSPEVFNLIMKRRA 308 (369)
T ss_dssp HTCSEEEETT--CHHHH---HTTT-TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCE
T ss_pred cCCcEEeccc--cHHHH---HHhh-cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCCc-cccCHHHHHhCCcE
Confidence 9999999886 44433 3333 48999999999866789999999997 9999998764322 1222222 246889
Q ss_pred EEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 309 LKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 309 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
+.++.... .+++.++++++.++++++. + ++|+++++++||+.+.+++.. |+||+++
T Consensus 309 i~g~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~ 365 (369)
T 1uuf_A 309 IAGSMIGG---IPETQEMLDFCAEHGIVAD--I-EMIRADQINEAYERMLRGDVKYRFVIDNR 365 (369)
T ss_dssp EEECCSCC---HHHHHHHHHHHHHHTCCCC--E-EEECGGGHHHHHHHHHTTCSSSEEEEEGG
T ss_pred EEEeecCC---HHHHHHHHHHHHhCCCCcc--e-EEEcHHHHHHHHHHHHcCCCceEEEEecC
Confidence 99886543 3468899999999987654 4 579999999999999988766 9999875
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=384.50 Aligned_cols=323 Identities=24% Similarity=0.344 Sum_probs=280.8
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------------C------eEEEEEeeCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------------Q------CCRIVESVGPG 74 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------------~------~~G~V~~~G~~ 74 (371)
|||+++++++.+++++++|.|+|+++||+|||.+++||++|+++++|.++ + ++|+|+++|++
T Consensus 1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~ 80 (347)
T 1jvb_A 1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE 80 (347)
T ss_dssp CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence 89999999987799999999999999999999999999999999887432 1 69999999999
Q ss_pred CCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeC-CceE
Q 017460 75 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS-GCAV 153 (371)
Q Consensus 75 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~-~~~~ 153 (371)
|++|++||||+.++..+|+.|.+|+++++++|.+... .|+. .+ |+|+||+++++ +.++
T Consensus 81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~--~G~~-~~------------------G~~aey~~v~~~~~~~ 139 (347)
T 1jvb_A 81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW--LGIN-FD------------------GAYAEYVIVPHYKYMY 139 (347)
T ss_dssp CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE--BTTT-BC------------------CSSBSEEEESCGGGEE
T ss_pred CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc--cccc-CC------------------CcceeEEEecCccceE
Confidence 9999999999988889999999999999999987653 2332 22 48999999999 9999
Q ss_pred ECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccC-hHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHHcC
Q 017460 154 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLG-TVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFG 231 (371)
Q Consensus 154 ~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag-~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg 231 (371)
++ +++++++|+.+++++.|||+++ +.+++++|++|||+|+| ++|++++|+++.. |+ +|+++++++++++.++++|
T Consensus 140 ~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g 216 (347)
T 1jvb_A 140 KL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAG 216 (347)
T ss_dssp EC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHT
T ss_pred Ee-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhC
Confidence 99 9999999999999999999998 56899999999999975 9999999999999 99 9999999999999999999
Q ss_pred CceEeCCCCCCchHHHHHHHHhC-CCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC-CCCeeecchheeeeccEE
Q 017460 232 VTEFLNPNDNNEPVQQVIKRITD-GGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK-LKPEVAAHYGLFLSGRTL 309 (371)
Q Consensus 232 ~~~vi~~~~~~~~~~~~v~~~~~-gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~i 309 (371)
++.+++++ +.++.+.+.+++. +++|++||++|....++.++++++++ |+++.+|... .. .++... .+.+++++
T Consensus 217 ~~~~~~~~--~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~-~~~~~~-~~~~~~~i 291 (347)
T 1jvb_A 217 ADYVINAS--MQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADL-HYHAPL-ITLSEIQF 291 (347)
T ss_dssp CSEEEETT--TSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCCC-CCCHHH-HHHHTCEE
T ss_pred CCEEecCC--CccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCCC-CCCHHH-HHhCceEE
Confidence 99999887 5677888888887 59999999999876889999999997 9999999765 32 232221 23468999
Q ss_pred EecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 310 KGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.++.... .+++.++++++.+++++ ++++++|+++++++||+.+.+++.. |+||++
T Consensus 292 ~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 347 (347)
T 1jvb_A 292 VGSLVGN---QSDFLGIMRLAEAGKVK--PMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347 (347)
T ss_dssp EECCSCC---HHHHHHHHHHHHTTSSC--CCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred EEEeccC---HHHHHHHHHHHHcCCCC--ceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence 8876543 35789999999999875 4578999999999999999988876 999874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=384.12 Aligned_cols=323 Identities=23% Similarity=0.261 Sum_probs=277.1
Q ss_pred cceeeeEEEEecCC-CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCC
Q 017460 9 QVITCKAAVAWGAG-QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVT 76 (371)
Q Consensus 9 ~~~~~~a~~~~~~~-~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~ 76 (371)
++.+|||+++++++ +.++++++|.|+|++|||+|||.+++||++|++++.|.++. ++|+|+++|++|+
T Consensus 24 m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~ 103 (363)
T 3uog_A 24 MSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVT 103 (363)
T ss_dssp CCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred CchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCC
Confidence 46789999999764 35999999999999999999999999999999999886541 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCccccccc--ccccccCCCccceeccCcccccccCccceeeEEEeeCCceEE
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE--RRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVK 154 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~--~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~ 154 (371)
+|++||||++.+.. +|+.++ +.|.+.... ..|.. . .|+|+||++++++.+++
T Consensus 104 ~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~-~------------------~G~~aey~~v~~~~~~~ 157 (363)
T 3uog_A 104 RFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGA-H------------------PGVLSEYVVLPEGWFVA 157 (363)
T ss_dssp SCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTT-S------------------CCCCBSEEEEEGGGEEE
T ss_pred CCCCCCEEEEeccc------cccccc-cccccccccccccCcC-C------------------CCcceeEEEechHHeEE
Confidence 99999999998643 577778 888742210 02222 2 25899999999999999
Q ss_pred CCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 155 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 155 ~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
+|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+++|+ +|++++++++|++.++++|+++
T Consensus 158 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~ 236 (363)
T 3uog_A 158 APKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADH 236 (363)
T ss_dssp CCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSE
T ss_pred CCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCE
Confidence 999999999999999999999998788999999999999999999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEec
Q 017460 235 FLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGS 312 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~ 312 (371)
++|.. ..++.+.+++++++ ++|+|||++|. ..+..++++++++ |+++.+|.... ....++... +.+++++.++
T Consensus 237 vi~~~--~~~~~~~v~~~~~g~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~ 311 (363)
T 3uog_A 237 GINRL--EEDWVERVYALTGDRGADHILEIAGG-AGLGQSLKAVAPD-GRISVIGVLEG-FEVSGPVGPLLLKSPVVQGI 311 (363)
T ss_dssp EEETT--TSCHHHHHHHHHTTCCEEEEEEETTS-SCHHHHHHHEEEE-EEEEEECCCSS-CEECCBTTHHHHTCCEEEEC
T ss_pred EEcCC--cccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhhcC-CEEEEEecCCC-cccCcCHHHHHhCCcEEEEE
Confidence 99853 57899999999988 99999999996 5789999999997 99999998754 223333332 3568999998
Q ss_pred ccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 313 LFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.... .+++.++++++.++++ +++++++|+++++++||+.+.+++ . |+||++
T Consensus 312 ~~~~---~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~-~gKvvi~~ 363 (363)
T 3uog_A 312 SVGH---RRALEDLVGAVDRLGL--KPVIDMRYKFTEVPEALAHLDRGP-FGKVVIEF 363 (363)
T ss_dssp CCCC---HHHHHHHHHHHHHHTC--CCCEEEEEEGGGHHHHHHTGGGCC-SBEEEEEC
T ss_pred ecCC---HHHHHHHHHHHHcCCC--ccceeeEEcHHHHHHHHHHHHcCC-CccEEEeC
Confidence 7653 4578999999999985 456889999999999999999888 6 999975
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-53 Score=393.28 Aligned_cols=323 Identities=18% Similarity=0.225 Sum_probs=274.2
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-------C------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-------Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-------~------~~G~V~~~G~~v~~~~ 79 (371)
|||+++++++++++++++|.|+|+++||+|||.+++||++|+++++|.++ + ++| |+++|++ ++|+
T Consensus 1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~ 78 (357)
T 2b5w_A 1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE 78 (357)
T ss_dssp CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence 89999999987799999999999999999999999999999999988532 3 699 9999999 9999
Q ss_pred CCCEEEeeecCC--CCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 80 EGEHVLTVFIGE--CKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 80 ~Gd~V~~~~~~~--~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
+||||++.+..+ |+.|.+|+++++++|.+......|+...+ |+|+||++++++.++++|+
T Consensus 79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~------------------G~~aey~~v~~~~~~~iP~ 140 (357)
T 2b5w_A 79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAH------------------GYMSEFFTSPEKYLVRIPR 140 (357)
T ss_dssp TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEEC------------------CSCBSEEEEEGGGEEECCG
T ss_pred CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCC------------------cceeeEEEEchHHeEECCC
Confidence 999999998888 99999999999999997654211320012 4899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCC------CEEEEEccChHHHHH-HHHH-HHcCCCEEEEEcCChh---hHHH
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKG------STVVIFGLGTVGLSV-AQGA-KARGASRIIGVDTNPE---KCEK 226 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~------~~VlI~Gag~~G~~a-i~la-~~~G~~~vi~~~~~~~---~~~~ 226 (371)
+++ ++| +++.+++|||+++ +.+++++| ++|||+|+|++|+++ +|+| +++|+++|++++++++ |+++
T Consensus 141 ~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~ 217 (357)
T 2b5w_A 141 SQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDI 217 (357)
T ss_dssp GGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHH
T ss_pred Ccc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHH
Confidence 999 655 4667999999998 77889999 999999999999999 9999 9999955999999999 9999
Q ss_pred HHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe----
Q 017460 227 AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL---- 302 (371)
Q Consensus 227 ~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---- 302 (371)
++++|++++ +++ +.++.+ ++++ ++++|+|||++|....++.++++++++ |+++.+|.... ....++...
T Consensus 218 ~~~lGa~~v-~~~--~~~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~ 290 (357)
T 2b5w_A 218 IEELDATYV-DSR--QTPVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSD-WAFEVDAGAFHRE 290 (357)
T ss_dssp HHHTTCEEE-ETT--TSCGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCCC-CCCCCCHHHHHHH
T ss_pred HHHcCCccc-CCC--ccCHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEeCCCC-CCceecHHHHhHH
Confidence 999999988 887 456767 7777 559999999999876789999999997 99999998752 223333332
Q ss_pred -eeeccEEEecccCCCCcCCCHHHHHHHHHcC--CCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeCCC
Q 017460 303 -FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKK--EFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMPK 371 (371)
Q Consensus 303 -~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~~~ 371 (371)
+.+++++.++.... .+++.++++++.++ ++ +.++++++|+++++++||+.+ +...|+||++++
T Consensus 291 ~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l~~~~~A~~~~--~~~gKvvi~~~~ 356 (357)
T 2b5w_A 291 MVLHNKALVGSVNSH---VEHFEAATVTFTKLPKWF-LEDLVTGVHPLSEFEAAFDDD--DTTIKTAIEFST 356 (357)
T ss_dssp HHHTTCEEEECCCCC---HHHHHHHHHHHHHSCHHH-HHHHEEEEEEGGGGGGGGCCS--TTCCEEEEECCC
T ss_pred HHhCCeEEEEeccCC---HHHHHHHHHHHHhCchhh-hhhhcceeecHHHHHHHHHHh--CCCceEEEEecC
Confidence 25689999876543 35789999999999 76 667788999999999999988 344499998864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=391.88 Aligned_cols=336 Identities=22% Similarity=0.300 Sum_probs=277.5
Q ss_pred eeeEEEEecCCCCeEEEEeecCCCC-CCc------EEEEEeeecCCcchhhhhcCCCC---C------eEEEEEeeCCCC
Q 017460 12 TCKAAVAWGAGQPLVVEEVEVNPPQ-PEE------IRIKVVCTSLCRSDITAWETQWP---Q------CCRIVESVGPGV 75 (371)
Q Consensus 12 ~~~a~~~~~~~~~l~~~~~~~p~~~-~~e------vlV~v~~~~i~~~D~~~~~g~~~---~------~~G~V~~~G~~v 75 (371)
+|||+++++++. ++++++|.|+|. ++| |+|||.+++||++|+++++|.++ + ++|+|+++|++|
T Consensus 2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~p~v~GhE~~G~V~~vG~~v 80 (398)
T 1kol_A 2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGRDV 80 (398)
T ss_dssp CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCCCTTCBCCCCEEEEEEEECTTC
T ss_pred ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCCCCCCcccCcccEEEEEEECCCC
Confidence 699999998875 999999999996 898 99999999999999999988642 1 699999999999
Q ss_pred CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccc----cccccCCCccceeccCcccccccCccceeeEEEeeCC-
Q 017460 76 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER----RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG- 150 (371)
Q Consensus 76 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~----~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~- 150 (371)
++|++||||++.+..+|+.|.+|+++++++|.+..... .|+. ..+ ...|+|+||++++++
T Consensus 81 ~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~-~~~--------------~~~G~~aey~~v~~~~ 145 (398)
T 1kol_A 81 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYV-DMG--------------DWTGGQAEYVLVPYAD 145 (398)
T ss_dssp CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCT-TSC--------------CBCCCSBSEEEESSHH
T ss_pred CcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeec-cCC--------------CCCceeeeEEEecchh
Confidence 99999999999888999999999999999998764211 1210 000 012589999999987
Q ss_pred -ceEECCCCCChhh----hhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHH
Q 017460 151 -CAVKVSSIAPLEK----ICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225 (371)
Q Consensus 151 -~~~~~P~~~~~~~----aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~ 225 (371)
.++++|+++++++ ++++++++.|||+++ +.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++
T Consensus 146 ~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~ 224 (398)
T 1kol_A 146 FNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA 224 (398)
T ss_dssp HHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred CeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence 8999999999888 788888999999998 5789999999999999999999999999999978999999999999
Q ss_pred HHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCCh---------------HHHHHHHHHhccCCceEEEecC
Q 017460 226 KAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDT---------------GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 226 ~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~---------------~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+++++|++ ++++++ .+.+.+.+++++++ ++|+|||++|.. ..++.++++++++ |+++.+|.
T Consensus 225 ~a~~lGa~-~i~~~~-~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~ 301 (398)
T 1kol_A 225 HAKAQGFE-IADLSL-DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGL 301 (398)
T ss_dssp HHHHTTCE-EEETTS-SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSC
T ss_pred HHHHcCCc-EEccCC-cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC-CEEEEecc
Confidence 99999997 787752 23488899999988 999999999975 2689999999997 99999986
Q ss_pred CC-CCC----------eeecchhe-eeeccEEEecccCCCCcCCCHHHHHHHHHcCCCC-CCcceeeeecchhHHHHHHH
Q 017460 290 PK-LKP----------EVAAHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFM-VDEFITHNLLFEDINQAFNL 356 (371)
Q Consensus 290 ~~-~~~----------~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~a~~~ 356 (371)
.. ... .+.+.... +.+++++.++... ....+.++++++.+|+++ ..++++++|+|+++++||+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~ 378 (398)
T 1kol_A 302 YVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTP---VMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGE 378 (398)
T ss_dssp CCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSCC---HHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHH
T ss_pred ccCCcccccccccccccccccHHHHhhcccEEEecccC---hHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHH
Confidence 52 111 12222221 2457788765321 124577899999999987 34567899999999999999
Q ss_pred HHcCCeeeEEEeCC
Q 017460 357 MKEGKCLRSVIHMP 370 (371)
Q Consensus 357 ~~~~~~~kvvi~~~ 370 (371)
+.+++..|+||+++
T Consensus 379 ~~~~~~gKvvi~~~ 392 (398)
T 1kol_A 379 FDAGVPKKFVIDPH 392 (398)
T ss_dssp HHHTCSCEEEECTT
T ss_pred HhCCCceEEEEEeC
Confidence 98776679999875
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=383.28 Aligned_cols=333 Identities=20% Similarity=0.289 Sum_probs=276.5
Q ss_pred cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCCC
Q 017460 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTEF 78 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~~ 78 (371)
.+++|+++++.++++++++.++|.|++++|||+|||.+++||++|+++++|.++ + ++|+|+++|++|++|
T Consensus 6 ~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~~ 85 (357)
T 2cf5_A 6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF 85 (357)
T ss_dssp CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCSC
T ss_pred CcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence 367899999988777799999999999999999999999999999999988543 1 699999999999999
Q ss_pred CCCCEEEeee-cCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 79 NEGEHVLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 79 ~~Gd~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
++||||++.+ ..+|+.|.+|+++++++|.+..+...+.. ..| ....|+|+||++++++.++++|+
T Consensus 86 ~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~P~ 151 (357)
T 2cf5_A 86 TVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVY-ING-------------QPTQGGFAKATVVHQKFVVKIPE 151 (357)
T ss_dssp CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBC-TTS-------------CBCCCSSBSCEEEEGGGEEECCS
T ss_pred CCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccc-cCC-------------CCCCCccccEEEechhhEEECcC
Confidence 9999998755 46899999999999999965543211100 001 01136899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCC-CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceE
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADIS-KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEF 235 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~-~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~v 235 (371)
++++++||++++++.|||+++ +..+++ +|++|||+|+|++|++++|+|+++|+ +|++++++++|++.++ ++|++++
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l-~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v 229 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPL-SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADDY 229 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHH-HHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCE
T ss_pred CCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCcee
Confidence 999999999999999999998 557888 99999999999999999999999999 9999999999999987 9999999
Q ss_pred eCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccC
Q 017460 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFG 315 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 315 (371)
++++ +. +.+++.++ ++|+|||++|....++.++++++++ |+++.+|....... .++...+.+++++.|+...
T Consensus 230 i~~~--~~---~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~-~~~~~~~~~~~~i~g~~~~ 301 (357)
T 2cf5_A 230 VIGS--DQ---AKMSELAD-SLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINNPLQ-FLTPLLMLGRKVITGSFIG 301 (357)
T ss_dssp EETT--CH---HHHHHSTT-TEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSSCCC-CCHHHHHHHTCEEEECCSC
T ss_pred eccc--cH---HHHHHhcC-CCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCCCcc-ccCHHHHhCccEEEEEccC
Confidence 9886 32 34555553 8999999999765789999999997 99999997653222 1222233568999988654
Q ss_pred CCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 316 GWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
. ..++.++++++.++++++. + ++|+++++++||+.+.+++.. |++|++++
T Consensus 302 ~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 352 (357)
T 2cf5_A 302 S---MKETEEMLEFCKEKGLSSI--I-EVVKMDYVNTAFERLEKNDVRYRFVVDVEG 352 (357)
T ss_dssp C---HHHHHHHHHHHHHTTCCCC--E-EEEEGGGHHHHHHHHHTTCSSSEEEEETTS
T ss_pred C---HHHHHHHHHHHHcCCCCCc--e-EEEeHHHHHHHHHHHHCCCCceEEEEeCCc
Confidence 3 3468899999999998754 4 799999999999999988876 99998753
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=379.03 Aligned_cols=339 Identities=21% Similarity=0.315 Sum_probs=273.5
Q ss_pred CCcCCCCccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEe
Q 017460 1 MSTSIKQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVES 70 (371)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~ 70 (371)
|+.+|....+++|+++...+.++.+++.++|.|++++|||+|||.+++||++|++++.|.++ + ++|+|++
T Consensus 5 ~~~~~~~~~~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~ 84 (366)
T 1yqd_A 5 MSKSPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTE 84 (366)
T ss_dssp ---CHHHHSSEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEE
T ss_pred cCCCcchhCCeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEE
Confidence 45555332355666666666556699999999999999999999999999999999987542 1 6999999
Q ss_pred eCCCCCCCCCCCEEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeC
Q 017460 71 VGPGVTEFNEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS 149 (371)
Q Consensus 71 ~G~~v~~~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~ 149 (371)
+|++|++|++||||++.+. .+|+.|.+|+++++++|.+......|.. ..| ....|+|+||+++++
T Consensus 85 vG~~V~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~-~~g-------------~~~~G~~aey~~v~~ 150 (366)
T 1yqd_A 85 VGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIY-HDG-------------TITYGGYSNHMVANE 150 (366)
T ss_dssp ECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBC-TTS-------------CBCCCSSBSEEEEEG
T ss_pred ECCCCCcCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccc-cCC-------------CcCCCccccEEEEch
Confidence 9999999999999987654 6899999999999999965443211110 001 011358999999999
Q ss_pred CceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCC-CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH
Q 017460 150 GCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADIS-KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK 228 (371)
Q Consensus 150 ~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~-~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 228 (371)
+.++++|+++++++||.+++++.|||+++ +..+++ +|++|||+|+|++|++++|+|+++|+ +|+++++++++++.++
T Consensus 151 ~~~~~~P~~ls~~~aa~l~~~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~ 228 (366)
T 1yqd_A 151 RYIIRFPDNMPLDGGAPLLCAGITVYSPL-KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEAL 228 (366)
T ss_dssp GGCEECCTTSCTTTTGGGGTHHHHHHHHH-HHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHH
T ss_pred hhEEECCCCCCHHHhhhhhhhHHHHHHHH-HhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999998 456788 99999999999999999999999999 9999999999998886
Q ss_pred -HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeec
Q 017460 229 -AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSG 306 (371)
Q Consensus 229 -~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~ 306 (371)
++|++.++|++ +. +.+++.++ ++|+|||++|....++.++++++++ |+++.+|..... ..++... +.++
T Consensus 229 ~~lGa~~v~~~~--~~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~ 299 (366)
T 1yqd_A 229 KNFGADSFLVSR--DQ---EQMQAAAG-TLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPEKP--LELPAFSLIAGR 299 (366)
T ss_dssp HTSCCSEEEETT--CH---HHHHHTTT-CEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCSSC--EEECHHHHHTTT
T ss_pred HhcCCceEEecc--CH---HHHHHhhC-CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCCCC--CCcCHHHHHhCC
Confidence 89999999886 32 34555553 8999999999765688999999997 999999976542 2333322 3468
Q ss_pred cEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 307 RTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 307 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
+++.++.... ..++.++++++.++++++. + ++|+|+++++||+.+.+++.. |+||.++
T Consensus 300 ~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~ 358 (366)
T 1yqd_A 300 KIVAGSGIGG---MKETQEMIDFAAKHNITAD--I-EVISTDYLNTAMERLAKNDVRYRFVIDVG 358 (366)
T ss_dssp CEEEECCSCC---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred cEEEEecCCC---HHHHHHHHHHHHcCCCCCc--e-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence 8998876543 3468899999999998764 4 799999999999999988876 9998753
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=371.95 Aligned_cols=323 Identities=18% Similarity=0.170 Sum_probs=261.6
Q ss_pred CCcCCCCccceeeeEEEEecCCCCeEEE-EeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-------eEEEEEeeC
Q 017460 1 MSTSIKQPQVITCKAAVAWGAGQPLVVE-EVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-------CCRIVESVG 72 (371)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~l~~~-~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-------~~G~V~~~G 72 (371)
|+++ +++++.+|||+++++++. ++++ ++|.|+|+++||+|||.+++||++|++++.|.... ++|+|+++|
T Consensus 1 ~~~~-tm~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~p~v~G~e~~G~V~~vG 78 (371)
T 3gqv_A 1 MGDQ-PFIPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFATPWAFLGTDYAGTVVAVG 78 (371)
T ss_dssp ---C-CCCCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC-----CCTTSCCCSEEEEEEEEEC
T ss_pred CCCC-CCCCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcCCCCCccCccccEEEEEEeC
Confidence 4444 366789999999999976 9998 99999999999999999999999999998774322 799999999
Q ss_pred CCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCce
Q 017460 73 PGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA 152 (371)
Q Consensus 73 ~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~ 152 (371)
++|++|++||||+.. |..|+++. . . .|+|+||++++++.+
T Consensus 79 ~~v~~~~~GdrV~~~-------~~~~~~~~--------------~-~------------------~G~~aey~~v~~~~~ 118 (371)
T 3gqv_A 79 SDVTHIQVGDRVYGA-------QNEMCPRT--------------P-D------------------QGAFSQYTVTRGRVW 118 (371)
T ss_dssp TTCCSCCTTCEEEEE-------CCTTCTTC--------------T-T------------------CCSSBSEEECCTTCE
T ss_pred CCCCCCCCCCEEEEe-------ccCCCCCC--------------C-C------------------CCcCcCeEEEchhhe
Confidence 999999999999765 44443321 0 2 248999999999999
Q ss_pred EECCCCCChhhhhhcchhhhhHHhHhhhh-cCC-----------CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC
Q 017460 153 VKVSSIAPLEKICLLSCGLSAGLGAAWNV-ADI-----------SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT 219 (371)
Q Consensus 153 ~~~P~~~~~~~aa~~~~~~~~a~~~l~~~-~~~-----------~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~ 219 (371)
+++|+++++++|+++++++.|||+++.+. .++ ++|++|||+|+ |++|++++|+|+++|+ +|+++.
T Consensus 119 ~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~- 196 (371)
T 3gqv_A 119 AKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC- 196 (371)
T ss_dssp EECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-
T ss_pred EECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-
Confidence 99999999999999999999999998766 553 89999999997 8999999999999999 999985
Q ss_pred ChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHh-ccCCceEEEecCCCC----CC
Q 017460 220 NPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC-CDGWGLAVTLGVPKL----KP 294 (371)
Q Consensus 220 ~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l-~~~~G~~v~~g~~~~----~~ 294 (371)
+++|+++++++|+++++|++ +.++.+.+++++++++|+|||++|+...++.+++++ +++ |+++.+|.... ..
T Consensus 197 ~~~~~~~~~~lGa~~vi~~~--~~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~ 273 (371)
T 3gqv_A 197 SPHNFDLAKSRGAEEVFDYR--APNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAATRK 273 (371)
T ss_dssp CGGGHHHHHHTTCSEEEETT--STTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---CCS
T ss_pred CHHHHHHHHHcCCcEEEECC--CchHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCcccccccc
Confidence 78999999999999999997 678999999999889999999999977899999999 586 99999986543 11
Q ss_pred eeec----chheeeeccEEEecccCCCCcC------CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-
Q 017460 295 EVAA----HYGLFLSGRTLKGSLFGGWKPK------TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL- 363 (371)
Q Consensus 295 ~~~~----~~~~~~~~~~i~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~- 363 (371)
.... ....+.+++++.|+........ +.+.++++++.+|++++.+.+++.|+++++++||+.+.+++..
T Consensus 274 ~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~G 353 (371)
T 3gqv_A 274 MVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSG 353 (371)
T ss_dssp CEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSS
T ss_pred ccceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCce
Confidence 1221 1223345778877754322210 1234788999999999998888889999999999999988765
Q ss_pred -eEEEeCC
Q 017460 364 -RSVIHMP 370 (371)
Q Consensus 364 -kvvi~~~ 370 (371)
|+||.++
T Consensus 354 kkvvv~~~ 361 (371)
T 3gqv_A 354 EKLVVRLE 361 (371)
T ss_dssp CEEEEEEC
T ss_pred EEEEEEeC
Confidence 7777654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=383.95 Aligned_cols=333 Identities=18% Similarity=0.213 Sum_probs=279.4
Q ss_pred ccceeeeEEEEecC---------------CCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcC-------------
Q 017460 8 PQVITCKAAVAWGA---------------GQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET------------- 59 (371)
Q Consensus 8 ~~~~~~~a~~~~~~---------------~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g------------- 59 (371)
+.|.+|||++++++ +++++++++|.|+|+++||+|||.+++||++|++...+
T Consensus 26 ~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g 105 (456)
T 3krt_A 26 PLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYG 105 (456)
T ss_dssp CCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHH
T ss_pred CCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhcc
Confidence 46789999999986 23499999999999999999999999999999865321
Q ss_pred ---------CCCC------eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccc
Q 017460 60 ---------QWPQ------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTR 124 (371)
Q Consensus 60 ---------~~~~------~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~ 124 (371)
.+|. ++|+|+++|++|++|++||||++.+. .|..|..|..+.++.|.+... .|+. ..
T Consensus 106 ~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~--~G~~-~~---- 177 (456)
T 3krt_A 106 RVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI--WGFE-TN---- 177 (456)
T ss_dssp TSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE--TTTT-SS----
T ss_pred ccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc--cccC-CC----
Confidence 1221 69999999999999999999998643 588899999999999987664 2322 11
Q ss_pred eeccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhh--cCCCCCCEEEEEcc-ChHHHH
Q 017460 125 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV--ADISKGSTVVIFGL-GTVGLS 201 (371)
Q Consensus 125 ~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~--~~~~~~~~VlI~Ga-g~~G~~ 201 (371)
.|+|+||++++++.++++|+++++++||++++++.|||+++... +++++|++|||+|+ |++|++
T Consensus 178 -------------~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~ 244 (456)
T 3krt_A 178 -------------FGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSY 244 (456)
T ss_dssp -------------SCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHH
T ss_pred -------------CCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHH
Confidence 25899999999999999999999999999999999999998654 78999999999997 999999
Q ss_pred HHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC---------------chHHHHHHHHhCC-CccEEEEcCC
Q 017460 202 VAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN---------------EPVQQVIKRITDG-GADYSFECIG 265 (371)
Q Consensus 202 ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~---------------~~~~~~v~~~~~g-g~dvVid~~g 265 (371)
++|+|+++|+ +|++++++++|++.++++|++.++++.+.+ ..+.+.+++++++ ++|+|||++|
T Consensus 245 avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G 323 (456)
T 3krt_A 245 ATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG 323 (456)
T ss_dssp HHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSC
T ss_pred HHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCC
Confidence 9999999999 999999999999999999999999886321 1345888999988 9999999999
Q ss_pred ChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeee
Q 017460 266 DTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHN 344 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 344 (371)
+ ..+..++++++++ |+++.+|.... ....++... +.+++++.|+..+.+ .++.++++++.+|+++ ++++++
T Consensus 324 ~-~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~l~~~g~l~--~~i~~~ 395 (456)
T 3krt_A 324 R-ETFGASVFVTRKG-GTITTCASTSG-YMHEYDNRYLWMSLKRIIGSHFANY---REAWEANRLIAKGRIH--PTLSKV 395 (456)
T ss_dssp H-HHHHHHHHHEEEE-EEEEESCCTTC-SEEEEEHHHHHHTTCEEEECCSCCH---HHHHHHHHHHHTTSSC--CCEEEE
T ss_pred c-hhHHHHHHHhhCC-cEEEEEecCCC-cccccCHHHHHhcCeEEEEeccCCH---HHHHHHHHHHHcCCcc--cceeEE
Confidence 8 6899999999997 99999997654 233333222 245789999876553 3577899999999976 457899
Q ss_pred ecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 345 LLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
|+|+++++||+.+.+++.. |++|.+.
T Consensus 396 ~~l~~~~eA~~~l~~~~~~GKvvv~~~ 422 (456)
T 3krt_A 396 YSLEDTGQAAYDVHRNLHQGKVGVLCL 422 (456)
T ss_dssp EEGGGHHHHHHHHHTTCSSSEEEEESS
T ss_pred EcHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence 9999999999999998887 9988764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=361.02 Aligned_cols=306 Identities=22% Similarity=0.275 Sum_probs=266.6
Q ss_pred cceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCC
Q 017460 9 QVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTE 77 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~ 77 (371)
.+.+|||+++++++.+ ++++++|.|+|++|||+|||.+++||++|++++.|.++. ++|+|+++|++|++
T Consensus 5 ~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~P~i~G~e~~G~V~~vG~~v~~ 84 (334)
T 3qwb_A 5 IPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEKPYVLGREASGTVVAKGKGVTN 84 (334)
T ss_dssp CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCCCSSEECCSEEEEEEEEECTTCCS
T ss_pred CchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCccccceEEEEEEECCCCCC
Confidence 5688999999998876 999999999999999999999999999999999987642 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEee-CCceEECC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKVS 156 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~-~~~~~~~P 156 (371)
|++||||++. .+ |+|+||++++ ++.++++|
T Consensus 85 ~~~GdrV~~~-------------------------------~~------------------G~~aey~~v~~~~~~~~~P 115 (334)
T 3qwb_A 85 FEVGDQVAYI-------------------------------SN------------------STFAQYSKISSQGPVMKLP 115 (334)
T ss_dssp CCTTCEEEEE-------------------------------CS------------------SCSBSEEEEETTSSEEECC
T ss_pred CCCCCEEEEe-------------------------------eC------------------CcceEEEEecCcceEEECC
Confidence 9999999986 33 3899999999 99999999
Q ss_pred CCCChhh---hhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC
Q 017460 157 SIAPLEK---ICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232 (371)
Q Consensus 157 ~~~~~~~---aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~ 232 (371)
+++++++ |+++++.+.|||+++.+.+++++|++|||+| +|++|++++|+|++.|+ +|++++++++|++.++++|+
T Consensus 116 ~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga 194 (334)
T 3qwb_A 116 KGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGA 194 (334)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC
T ss_pred CCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence 9999999 8888889999999987778999999999998 59999999999999999 99999999999999999999
Q ss_pred ceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC-eeecchheeeeccEEE
Q 017460 233 TEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP-EVAAHYGLFLSGRTLK 310 (371)
Q Consensus 233 ~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~i~ 310 (371)
+.+++++ +.++.+.+++.+++ ++|+|||++|. ..++.++++++++ |+++.+|...... .++.... +.+++++.
T Consensus 195 ~~~~~~~--~~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~-~~~~~~~~ 269 (334)
T 3qwb_A 195 EYLINAS--KEDILRQVLKFTNGKGVDASFDSVGK-DTFEISLAALKRK-GVFVSFGNASGLIPPFSITRL-SPKNITLV 269 (334)
T ss_dssp SEEEETT--TSCHHHHHHHHTTTSCEEEEEECCGG-GGHHHHHHHEEEE-EEEEECCCTTCCCCCBCGGGG-TTTTCEEE
T ss_pred cEEEeCC--CchHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhccC-CEEEEEcCCCCCCCCcchhhh-hhCceEEE
Confidence 9999987 67899999999988 99999999998 5799999999997 9999999765422 2332222 24588888
Q ss_pred ecccCCCCc-CC----CHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 311 GSLFGGWKP-KT----DLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 311 g~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
++.+..+.. .. .+.++++++.+|++++. ++++|+++++++||+.+.+++.. |++|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q 334 (334)
T 3qwb_A 270 RPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ 334 (334)
T ss_dssp CCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred EEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--eeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 776544322 11 23678999999998775 78999999999999999998887 99999864
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-49 Score=363.95 Aligned_cols=309 Identities=19% Similarity=0.257 Sum_probs=257.9
Q ss_pred CcCCCCccceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEE
Q 017460 2 STSIKQPQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIV 68 (371)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V 68 (371)
++.+..+.+.+|||+++++++.+ +++.++|.|++++|||+|||.|++||++|++++.|.++. ++|+|
T Consensus 11 ~~~~~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V 90 (342)
T 4eye_A 11 TLEAQTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVV 90 (342)
T ss_dssp -------CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEE
T ss_pred CCcccccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEE
Confidence 34445567999999999998766 999999999999999999999999999999999986531 69999
Q ss_pred EeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEee
Q 017460 69 ESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH 148 (371)
Q Consensus 69 ~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~ 148 (371)
+++|++++ |++||||+++. .+ |+|+||++++
T Consensus 91 ~~vG~~v~-~~vGDrV~~~~------------------------------~~------------------G~~aey~~v~ 121 (342)
T 4eye_A 91 RSAPEGSG-IKPGDRVMAFN------------------------------FI------------------GGYAERVAVA 121 (342)
T ss_dssp EECCTTSS-CCTTCEEEEEC------------------------------SS------------------CCSBSEEEEC
T ss_pred EEECCCCC-CCCCCEEEEec------------------------------CC------------------CcceEEEEEc
Confidence 99999999 99999999872 22 4899999999
Q ss_pred CCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH
Q 017460 149 SGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227 (371)
Q Consensus 149 ~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~ 227 (371)
++.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++++++++++.+
T Consensus 122 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~ 200 (342)
T 4eye_A 122 PSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFV 200 (342)
T ss_dssp GGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred HHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 99999999999999999999999999999988899999999999997 9999999999999999 999999999999999
Q ss_pred HHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-Ceeecchheeee
Q 017460 228 KAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAHYGLFLS 305 (371)
Q Consensus 228 ~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~ 305 (371)
+++|++.+++++ .++.+.+++.+++ ++|+|||++|+. .+..++++++++ |+++.+|..... ..++... .+.+
T Consensus 201 ~~~ga~~v~~~~---~~~~~~v~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~-~~~~ 274 (342)
T 4eye_A 201 KSVGADIVLPLE---EGWAKAVREATGGAGVDMVVDPIGGP-AFDDAVRTLASE-GRLLVVGFAAGGIPTIKVNR-LLLR 274 (342)
T ss_dssp HHHTCSEEEESS---TTHHHHHHHHTTTSCEEEEEESCC---CHHHHHHTEEEE-EEEEEC----------CCCC-GGGT
T ss_pred HhcCCcEEecCc---hhHHHHHHHHhCCCCceEEEECCchh-HHHHHHHhhcCC-CEEEEEEccCCCCCccCHHH-Hhhc
Confidence 999999999884 5788999999988 999999999985 789999999997 999999876542 1222222 2356
Q ss_pred ccEEEecccCCCCc------CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 306 GRTLKGSLFGGWKP------KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 306 ~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
++++.++..+.+.. .+.+.++++++.++ ++++++++|+++++++||+.+.+++.. |+||++
T Consensus 275 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g---l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P 342 (342)
T 4eye_A 275 NASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG---MRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP 342 (342)
T ss_dssp TCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT---CCCCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred CCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC---CCCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 89999887543211 13477889999999 455678999999999999999999887 999874
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-49 Score=377.59 Aligned_cols=333 Identities=16% Similarity=0.184 Sum_probs=276.5
Q ss_pred ccceeeeEEEEecCC-------------CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhc----------------
Q 017460 8 PQVITCKAAVAWGAG-------------QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWE---------------- 58 (371)
Q Consensus 8 ~~~~~~~a~~~~~~~-------------~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~---------------- 58 (371)
..|.+|||+++++++ ++++++++|.|+|+++||+|||.|++||++|++...
T Consensus 20 ~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~ 99 (447)
T 4a0s_A 20 PVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQ 99 (447)
T ss_dssp CCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTT
T ss_pred CCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhccc
Confidence 468899999999987 349999999999999999999999999999975321
Q ss_pred C------CCCC------eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCcccee
Q 017460 59 T------QWPQ------CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFS 126 (371)
Q Consensus 59 g------~~~~------~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~ 126 (371)
| ..|+ ++|+|+++|++|++|++||||++.+...|+.|..| ++.++.|.+... .|+. ..
T Consensus 100 g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~-~~~~~~c~~~~~--~G~~-~~------ 169 (447)
T 4a0s_A 100 GGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPAT-HGDGMLGTEQRA--WGFE-TN------ 169 (447)
T ss_dssp CGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGG-GTCTTCSTTCEE--TTTT-SS------
T ss_pred CccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccccc-cccccccccccc--cccc-CC------
Confidence 1 1221 79999999999999999999999998889888754 577899987764 3332 11
Q ss_pred ccCcccccccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhh--hcCCCCCCEEEEEcc-ChHHHHHH
Q 017460 127 IKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN--VADISKGSTVVIFGL-GTVGLSVA 203 (371)
Q Consensus 127 ~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~--~~~~~~~~~VlI~Ga-g~~G~~ai 203 (371)
.|+|+||++++++.++++|+++++++||++++++.|||+++.. .+++++|++|||+|+ |++|++++
T Consensus 170 -----------~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~ 238 (447)
T 4a0s_A 170 -----------FGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAI 238 (447)
T ss_dssp -----------SCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHH
T ss_pred -----------CCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHH
Confidence 2589999999999999999999999999999999999999864 388999999999997 99999999
Q ss_pred HHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC----------------chHHHHHHHHhCCCccEEEEcCCCh
Q 017460 204 QGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN----------------EPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 204 ~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~----------------~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
|+|++.|+ +|++++++++|++.++++|++.++++.+.+ ..+.+.+++.+++++|+|||++|.
T Consensus 239 qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~- 316 (447)
T 4a0s_A 239 QFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGR- 316 (447)
T ss_dssp HHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCH-
T ss_pred HHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCc-
Confidence 99999999 999999999999999999999888764211 123678888884499999999998
Q ss_pred HHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeec
Q 017460 268 GMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLL 346 (371)
Q Consensus 268 ~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 346 (371)
..++.++.+++++ |+++.+|.... ....++... +.+++++.|+..... .++.++++++.+|+++ ++++++|+
T Consensus 317 ~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~l~~~g~l~--~~i~~~~~ 389 (447)
T 4a0s_A 317 VTFGLSVIVARRG-GTVVTCGSSSG-YLHTFDNRYLWMKLKKIVGSHGANH---EEQQATNRLFESGAVV--PAMSAVYP 389 (447)
T ss_dssp HHHHHHHHHSCTT-CEEEESCCTTC-SEEEEEHHHHHHTTCEEEECCSCCH---HHHHHHHHHHHTTSSC--CCEEEEEE
T ss_pred hHHHHHHHHHhcC-CEEEEEecCCC-cccccCHHHHHhCCCEEEecCCCCH---HHHHHHHHHHHcCCcc--cceeEEEc
Confidence 4789999999997 99999997654 223333222 245888988876542 4678899999999975 46889999
Q ss_pred chhHHHHHHHHHcCCee-eEEEeCC
Q 017460 347 FEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 347 ~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
|+++++||+.+.+++.. |++|.+.
T Consensus 390 l~~~~~A~~~~~~~~~~GKvvv~~~ 414 (447)
T 4a0s_A 390 LAEAAEACRVVQTSRQVGKVAVLCM 414 (447)
T ss_dssp GGGHHHHHHHHHTTCCSSEEEEESS
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeC
Confidence 99999999999988887 9988764
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-50 Score=375.77 Aligned_cols=322 Identities=16% Similarity=0.205 Sum_probs=270.1
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCC-CcEEEEEeeecCCcchhhhhcC--CCC-------C------eEEEEEeeCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQP-EEIRIKVVCTSLCRSDITAWET--QWP-------Q------CCRIVESVGPGVT 76 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~-~evlV~v~~~~i~~~D~~~~~g--~~~-------~------~~G~V~~~G~~v~ 76 (371)
|||+++++++++++++++|.|+|++ +||+|||.|++||++|++++.| .++ + ++|+|++ ++ +
T Consensus 1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~ 77 (366)
T 2cdc_A 1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H 77 (366)
T ss_dssp CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence 7999999988779999999999999 9999999999999999999998 432 3 6999999 77 8
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+|++||||++.+..+|+.|.+|+++++++|.+......|+.+. .|+|+||++++++.++++|
T Consensus 78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~------------------~G~~aey~~v~~~~~~~iP 139 (366)
T 2cdc_A 78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKM------------------DGFMREWWYDDPKYLVKIP 139 (366)
T ss_dssp SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEE------------------CCSCBSEEEECGGGEEEEC
T ss_pred CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCC------------------CCceeEEEEechHHeEECc
Confidence 8999999999999999999999999999998765321121101 2589999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhh--h--hcCCC--C-------CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh--
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAW--N--VADIS--K-------GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP-- 221 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~--~--~~~~~--~-------~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~-- 221 (371)
++++ ++|+ ++.++.|||+++. + .++++ + |++|||+|+|++|++++|+|+.+|+ +|+++++++
T Consensus 140 ~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~ 216 (366)
T 2cdc_A 140 KSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPT 216 (366)
T ss_dssp GGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCC
T ss_pred CCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccc
Confidence 9999 8775 5569999999985 3 78888 8 9999999999999999999999999 999999998
Q ss_pred -hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHH-HHHHHHhccCCceEEEecCCCCCCeeecc
Q 017460 222 -EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMI-TTALQSCCDGWGLAVTLGVPKLKPEVAAH 299 (371)
Q Consensus 222 -~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l-~~~~~~l~~~~G~~v~~g~~~~~~~~~~~ 299 (371)
++++.++++|++.+ | + + ++.+.+++ +++++|+|||++|....+ +.++++++++ |+++.+|..... ...++
T Consensus 217 ~~~~~~~~~~ga~~v-~-~--~-~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~~ 288 (366)
T 2cdc_A 217 EVEQTVIEETKTNYY-N-S--S-NGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTSG-SVPLD 288 (366)
T ss_dssp HHHHHHHHHHTCEEE-E-C--T-TCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEE-EEEEECSCCCSC-EEEEE
T ss_pred hHHHHHHHHhCCcee-c-h--H-HHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcC-CEEEEEecCCCC-ccccC
Confidence 89999999999988 7 5 4 66677776 556899999999986678 9999999997 999999986542 23333
Q ss_pred hh----eeeeccEEEecccCCCCcCCCHHHHHHHHHcCCCC----CCcceeeeecchhHHHHHHH--HHcCCee-eEEEe
Q 017460 300 YG----LFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFM----VDEFITHNLLFEDINQAFNL--MKEGKCL-RSVIH 368 (371)
Q Consensus 300 ~~----~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~a~~~--~~~~~~~-kvvi~ 368 (371)
.. .+.+++++.|+.... ..++.++++++.+++++ ++++++++|+|+++++||+. ++ +... |+||+
T Consensus 289 ~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~-~~~~gKvvi~ 364 (366)
T 2cdc_A 289 YKTLQEIVHTNKTIIGLVNGQ---KPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREK-EHGEIKIRIL 364 (366)
T ss_dssp HHHHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCC-CTTCCEEEEE
T ss_pred hhhhHHHHhcCcEEEEecCCC---HHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhh-cCCceEEEEe
Confidence 32 235689999876532 35789999999999977 77888899999999999999 55 4445 99998
Q ss_pred CC
Q 017460 369 MP 370 (371)
Q Consensus 369 ~~ 370 (371)
++
T Consensus 365 ~~ 366 (366)
T 2cdc_A 365 WE 366 (366)
T ss_dssp CC
T ss_pred cC
Confidence 74
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=361.83 Aligned_cols=308 Identities=19% Similarity=0.283 Sum_probs=266.6
Q ss_pred CccceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCC
Q 017460 7 QPQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGP 73 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~ 73 (371)
++++.+|||+++++++.+ +++.++|.|+|+++||+|||.+++||++|++++.|.++. ++|+|+++|+
T Consensus 23 ~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~ 102 (353)
T 4dup_A 23 MSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGP 102 (353)
T ss_dssp CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECT
T ss_pred CCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECC
Confidence 346788999999998765 999999999999999999999999999999999987541 6999999999
Q ss_pred CCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceE
Q 017460 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV 153 (371)
Q Consensus 74 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~ 153 (371)
+|++|++||||++.. .+ |+|+||++++++.++
T Consensus 103 ~v~~~~vGdrV~~~~------------------------------~~------------------G~~aey~~v~~~~~~ 134 (353)
T 4dup_A 103 GVSGYAVGDKVCGLA------------------------------NG------------------GAYAEYCLLPAGQIL 134 (353)
T ss_dssp TCCSCCTTCEEEEEC------------------------------SS------------------CCSBSEEEEEGGGEE
T ss_pred CCCCCCCCCEEEEec------------------------------CC------------------CceeeEEEEcHHHcE
Confidence 999999999999762 22 489999999999999
Q ss_pred ECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC
Q 017460 154 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232 (371)
Q Consensus 154 ~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~ 232 (371)
++|+++++++||+++++++|||+++.+.+++++|++|||+| +|++|++++|+|+..|+ +|+++++++++++.++++|+
T Consensus 135 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa 213 (353)
T 4dup_A 135 PFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGA 213 (353)
T ss_dssp ECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCC
Confidence 99999999999999999999999988889999999999995 69999999999999999 99999999999999999999
Q ss_pred ceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEe
Q 017460 233 TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKG 311 (371)
Q Consensus 233 ~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g 311 (371)
+.+++++ +.++.+.+++.+++++|++||++|+. .+..++++++++ |+++.+|.........++... +.+++++.|
T Consensus 214 ~~~~~~~--~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g 289 (353)
T 4dup_A 214 KRGINYR--SEDFAAVIKAETGQGVDIILDMIGAA-YFERNIASLAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLTVTG 289 (353)
T ss_dssp SEEEETT--TSCHHHHHHHHHSSCEEEEEESCCGG-GHHHHHHTEEEE-EEEEECCCTTCSEEEEEECHHHHHTTCEEEE
T ss_pred CEEEeCC--chHHHHHHHHHhCCCceEEEECCCHH-HHHHHHHHhccC-CEEEEEEecCCCcccCCCHHHHHhcCceEEE
Confidence 9999987 67889999998844999999999985 789999999997 999999977553221133222 246899999
Q ss_pred cccCCCCcC-------CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 312 SLFGGWKPK-------TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 312 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+....+... ..+.++++++.+++++ ++++++|+++++++||+.+.+++.. |+||++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~ 353 (353)
T 4dup_A 290 STMRPRTAEEKRAIRDDLLSEVWPLLEAGTVA--PVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV 353 (353)
T ss_dssp CCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred EeccccchhhhHHHHHHHHHHHHHHHHCCCcc--CCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 877654321 0167788999999965 4678999999999999999998877 999875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=361.44 Aligned_cols=307 Identities=16% Similarity=0.207 Sum_probs=260.2
Q ss_pred ceeeeEEEEecCCCC---eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCC
Q 017460 10 VITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGV 75 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v 75 (371)
+++|||+++++++++ ++++++|.|+|++|||+|||.+++||++|++++.|.++. ++|+|+++|++|
T Consensus 2 ~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v 81 (340)
T 3gms_A 2 SLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFV 81 (340)
T ss_dssp CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTS
T ss_pred CcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCC
Confidence 368999999999987 999999999999999999999999999999999986531 699999999999
Q ss_pred CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEEC
Q 017460 76 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV 155 (371)
Q Consensus 76 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~ 155 (371)
++|++||||+... .+ |+|+||++++++.++++
T Consensus 82 ~~~~vGdrV~~~~------------------------------~~------------------G~~aey~~v~~~~~~~v 113 (340)
T 3gms_A 82 SRELIGKRVLPLR------------------------------GE------------------GTWQEYVKTSADFVVPI 113 (340)
T ss_dssp CGGGTTCEEEECS------------------------------SS------------------CSSBSEEEEEGGGEEEC
T ss_pred CCCCCCCEEEecC------------------------------CC------------------ccceeEEEcCHHHeEEC
Confidence 9999999998651 22 48999999999999999
Q ss_pred CCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 156 SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 156 P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
|+++++++||++++.++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|+++
T Consensus 114 P~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~ 192 (340)
T 3gms_A 114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAY 192 (340)
T ss_dssp CTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSE
T ss_pred CCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcE
Confidence 9999999999999999999999988999999999999997 5999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecc
Q 017460 235 FLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSL 313 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~ 313 (371)
++|++ +.++.+.+++++++ ++|+|||++|+. ....++++++++ |+++.+|.... ..+++.......++++..+.
T Consensus 193 ~~~~~--~~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~~~ 267 (340)
T 3gms_A 193 VIDTS--TAPLYETVMELTNGIGADAAIDSIGGP-DGNELAFSLRPN-GHFLTIGLLSG-IQVNWAEIVTKAKVHANIFH 267 (340)
T ss_dssp EEETT--TSCHHHHHHHHTTTSCEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTTS-CCCCHHHHHHTSCCEEEECC
T ss_pred EEeCC--cccHHHHHHHHhCCCCCcEEEECCCCh-hHHHHHHHhcCC-CEEEEEeecCC-CCCCHHHhhhcccceEEEEE
Confidence 99987 67899999999988 999999999986 456677999997 99999997654 22322221111234443332
Q ss_pred cCCCC-------cCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCC-ee-eEEEeCCC
Q 017460 314 FGGWK-------PKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGK-CL-RSVIHMPK 371 (371)
Q Consensus 314 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~-~~-kvvi~~~~ 371 (371)
+..+. ...++.++++++.+|++++.. ++++|+++++++||+.+.+++ .. |++|++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~ 333 (340)
T 3gms_A 268 LRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYELADVKAAVDVVQSAEKTKGKVFLTSYE 333 (340)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred ehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 21110 124688899999999998865 679999999999999999987 43 99998764
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-47 Score=352.55 Aligned_cols=306 Identities=21% Similarity=0.192 Sum_probs=256.1
Q ss_pred eeeeEEEEecCC-----CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC--------eEEEEEeeCCCCCC
Q 017460 11 ITCKAAVAWGAG-----QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ--------CCRIVESVGPGVTE 77 (371)
Q Consensus 11 ~~~~a~~~~~~~-----~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~--------~~G~V~~~G~~v~~ 77 (371)
|+|||++++++| +.+++.++|.|+|++|||+|||.+++||++|++++.|.... ++|+|+++|++|++
T Consensus 1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~p~i~G~e~~G~V~~vG~~v~~ 80 (346)
T 3fbg_A 1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSKAPRVLGFDAIGVVESVGNEVTM 80 (346)
T ss_dssp -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSCCSSSCBCCCCCEEEEEEEECTTCCS
T ss_pred CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCCCCCCCcCcCCccEEEEEEeCCCCCc
Confidence 579999999876 34999999999999999999999999999999999886321 79999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
|++||||+..... . . .|+|+||++++++.++++|+
T Consensus 81 ~~~GdrV~~~~~~--------------------------~-~------------------~G~~aey~~v~~~~~~~iP~ 115 (346)
T 3fbg_A 81 FNQGDIVYYSGSP--------------------------D-Q------------------NGSNAEYQLINERLVAKAPK 115 (346)
T ss_dssp CCTTCEEEECCCT--------------------------T-S------------------CCSSBSEEEEEGGGEEECCS
T ss_pred CCCCCEEEEcCCC--------------------------C-C------------------CcceeEEEEEChHHeEECCC
Confidence 9999999975210 0 1 24899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCC------CCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADIS------KGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~------~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
++++++|+++++++.|||+++.+.++++ +|++|||+| +|++|++++|+|+++|+ +|+++++++++++.++++
T Consensus 116 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l 194 (346)
T 3fbg_A 116 NISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM 194 (346)
T ss_dssp SSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH
T ss_pred CCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc
Confidence 9999999999999999999998888888 999999995 69999999999999999 999999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEE
Q 017460 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLK 310 (371)
Q Consensus 231 g~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~ 310 (371)
|++++++++ .++.+.+++..++++|+||||+|+...++.++++++++ |+++.++... ..+++... ..+++++.
T Consensus 195 Ga~~vi~~~---~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~-G~iv~~~~~~--~~~~~~~~-~~~~~~~~ 267 (346)
T 3fbg_A 195 GADIVLNHK---ESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPR-GHIATIVAFE--NDQDLNAL-KPKSLSFS 267 (346)
T ss_dssp TCSEEECTT---SCHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEE-EEEEESSCCS--SCBCGGGG-TTTTCEEE
T ss_pred CCcEEEECC---ccHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccC-CEEEEECCCC--CCCccccc-cccceEEE
Confidence 999999985 36888888883339999999999877789999999997 9999987532 23333322 23578888
Q ss_pred ecccCCCCc---------CCCHHHHHHHHHcCCCCCCcceeeee---cchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 311 GSLFGGWKP---------KTDLPSLVNRYLKKEFMVDEFITHNL---LFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 311 g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
++....... .+.+.++++++.+|++++ .++++| +++++++||+.+.+++.. |+||++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~ 339 (346)
T 3fbg_A 268 HEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQP--TTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE 339 (346)
T ss_dssp ECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCC--CEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred EEEEecccccchhhHHHHHHHHHHHHHHHHCCCEEC--CccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence 764432110 134678999999999764 466777 999999999999999988 99998763
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-47 Score=349.67 Aligned_cols=302 Identities=22% Similarity=0.264 Sum_probs=258.9
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~ 80 (371)
|||+++++++++ ++++++|.|+|++|||+|||.+++||++|++++.|.++. ++|+|+++|++|++|++
T Consensus 2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~ 81 (325)
T 3jyn_A 2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV 81 (325)
T ss_dssp EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence 899999998876 999999999999999999999999999999999986542 69999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
||||+.... .+ |+|+||++++++.++++|++++
T Consensus 82 GdrV~~~~~-----------------------------~~------------------G~~aey~~v~~~~~~~~P~~~~ 114 (325)
T 3jyn_A 82 GDRVAYGTG-----------------------------PL------------------GAYSEVHVLPEANLVKLADSVS 114 (325)
T ss_dssp TCEEEESSS-----------------------------SS------------------CCSBSEEEEEGGGEEECCTTSC
T ss_pred CCEEEEecC-----------------------------CC------------------ccccceEEecHHHeEECCCCCC
Confidence 999987520 12 4899999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
+++|+++++.+.|+|+++.+.+++++|++|||+| +|++|++++|+|++.|+ +|++++++++|++.++++|++.++|++
T Consensus 115 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~ 193 (325)
T 3jyn_A 115 FEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYS 193 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETT
T ss_pred HHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence 9999999999999999998888999999999998 59999999999999999 999999999999999999999999987
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC-eeecchheeee-ccEEEecccCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP-EVAAHYGLFLS-GRTLKGSLFGG 316 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~-~~~i~g~~~~~ 316 (371)
+.++.+.+++.+++ ++|+|||++|+ ..+..++++++++ |+++.+|...... .++..... .+ +.++.+..+..
T Consensus 194 --~~~~~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 268 (325)
T 3jyn_A 194 --HEDVAKRVLELTDGKKCPVVYDGVGQ-DTWLTSLDSVAPR-GLVVSFGNASGPVSGVNLGILA-QKDSVYVTRPTLGS 268 (325)
T ss_dssp --TSCHHHHHHHHTTTCCEEEEEESSCG-GGHHHHHTTEEEE-EEEEECCCTTCCCCSCCTHHHH-HTTSCEEECCCHHH
T ss_pred --CccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhcCC-CEEEEEecCCCCCCCCCHHHHh-hcCcEEEEeeeeee
Confidence 67899999999988 99999999998 5789999999997 9999999865431 23322221 23 45555443322
Q ss_pred CC-cCCCH----HHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 317 WK-PKTDL----PSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 317 ~~-~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+. ...++ .++++++.+|++++. ++++|+++++++||+.+.+++.. |+||.+
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p 325 (325)
T 3jyn_A 269 YANNAQNLQTMADELFDMLASGKLKVD--GIEQYALKDAAKAQIELSARRTTGSTILIP 325 (325)
T ss_dssp HSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred ecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 21 12233 478999999998876 67999999999999999999888 999864
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-47 Score=353.28 Aligned_cols=311 Identities=19% Similarity=0.286 Sum_probs=259.0
Q ss_pred CccceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCC
Q 017460 7 QPQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGP 73 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~ 73 (371)
.+.+.+|||+++++++.+ ++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|+
T Consensus 17 ~~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~ 96 (354)
T 2j8z_A 17 NLYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGP 96 (354)
T ss_dssp ----CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECS
T ss_pred ccchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECC
Confidence 445888999999998863 89999999999999999999999999999999988543 1 6999999999
Q ss_pred CC-CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCce
Q 017460 74 GV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA 152 (371)
Q Consensus 74 ~v-~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~ 152 (371)
+| ++|++||||++.. .+ |+|+||++++++.+
T Consensus 97 ~v~~~~~vGdrV~~~~------------------------------~~------------------G~~aey~~v~~~~~ 128 (354)
T 2j8z_A 97 GCQGHWKIGDTAMALL------------------------------PG------------------GGQAQYVTVPEGLL 128 (354)
T ss_dssp CC--CCCTTCEEEEEC------------------------------SS------------------CCSBSEEEEEGGGE
T ss_pred CcCCCCCCCCEEEEec------------------------------CC------------------CcceeEEEeCHHHc
Confidence 99 9999999999862 22 48999999999999
Q ss_pred EECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC
Q 017460 153 VKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231 (371)
Q Consensus 153 ~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg 231 (371)
+++|+++++++||+++++++|||+++.+.+++++|++|||+| +|++|++++|+++..|+ +|+++++++++++.++++|
T Consensus 129 ~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g 207 (354)
T 2j8z_A 129 MPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLG 207 (354)
T ss_dssp EECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcC
Confidence 999999999999999999999999987888999999999998 59999999999999999 9999999999999999999
Q ss_pred CceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecch-h-eeeeccE
Q 017460 232 VTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHY-G-LFLSGRT 308 (371)
Q Consensus 232 ~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~-~~~~~~~ 308 (371)
++.++|+. +.++.+.+.+.+++ ++|++||++|+. .+..++++++++ |+++.+|..... ...++. . .+.++++
T Consensus 208 ~~~~~~~~--~~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~~ 282 (354)
T 2j8z_A 208 AAAGFNYK--KEDFSEATLKFTKGAGVNLILDCIGGS-YWEKNVNCLALD-GRWVLYGLMGGG-DINGPLFSKLLFKRGS 282 (354)
T ss_dssp CSEEEETT--TSCHHHHHHHHTTTSCEEEEEESSCGG-GHHHHHHHEEEE-EEEEECCCTTCS-CCCSCHHHHHHHTTCE
T ss_pred CcEEEecC--ChHHHHHHHHHhcCCCceEEEECCCch-HHHHHHHhccCC-CEEEEEeccCCC-ccCCChhHHHHhCCCE
Confidence 99999887 56788889888877 999999999986 789999999997 999999976542 223332 2 2346889
Q ss_pred EEecccCCCCcCC-------CHHHHHHHHHcC-CCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 309 LKGSLFGGWKPKT-------DLPSLVNRYLKK-EFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 309 i~g~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
+.++......... .+.++++++.+| +++++++++++|+++++++||+.+.+++.. |++|++++
T Consensus 283 i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 354 (354)
T 2j8z_A 283 LITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELPQ 354 (354)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred EEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence 9988664432100 123466777788 444567788999999999999999888766 99998763
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-47 Score=353.54 Aligned_cols=307 Identities=18% Similarity=0.194 Sum_probs=256.4
Q ss_pred ccceeeeEEEEecC---C--CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeC
Q 017460 8 PQVITCKAAVAWGA---G--QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVG 72 (371)
Q Consensus 8 ~~~~~~~a~~~~~~---~--~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G 72 (371)
..+++|||++++++ + ..+++.++|.|+++++||+|||.+++||++|++++.|.++. ++|+|+++|
T Consensus 18 ~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG 97 (363)
T 4dvj_A 18 LYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVG 97 (363)
T ss_dssp -CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEEC
T ss_pred hhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeC
Confidence 34788999999876 2 23999999999999999999999999999999999886541 699999999
Q ss_pred CCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCce
Q 017460 73 PGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA 152 (371)
Q Consensus 73 ~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~ 152 (371)
++|++|++||||+..... . .+ |+|+||++++++.+
T Consensus 98 ~~v~~~~vGdrV~~~~~~--------------------------~-~~------------------G~~aey~~v~~~~~ 132 (363)
T 4dvj_A 98 PDVTLFRPGDEVFYAGSI--------------------------I-RP------------------GTNAEFHLVDERIV 132 (363)
T ss_dssp TTCCSCCTTCEEEECCCT--------------------------T-SC------------------CSCBSEEEEEGGGC
T ss_pred CCCCCCCCCCEEEEccCC--------------------------C-CC------------------ccceEEEEeCHHHe
Confidence 999999999999875210 0 12 48999999999999
Q ss_pred EECCCCCChhhhhhcchhhhhHHhHhhhhcCCC-----CCCEEEEEc-cChHHHHHHHHHHHc-CCCEEEEEcCChhhHH
Q 017460 153 VKVSSIAPLEKICLLSCGLSAGLGAAWNVADIS-----KGSTVVIFG-LGTVGLSVAQGAKAR-GASRIIGVDTNPEKCE 225 (371)
Q Consensus 153 ~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~-----~~~~VlI~G-ag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~ 225 (371)
+++|+++++++||++++++.|||+++.+.++++ +|++|||+| +|++|++++|+|+++ |+ +|++++++++|++
T Consensus 133 ~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~ 211 (363)
T 4dvj_A 133 GRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQE 211 (363)
T ss_dssp EECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHH
T ss_pred eECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHH
Confidence 999999999999999999999999988888888 899999998 699999999999985 77 9999999999999
Q ss_pred HHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeee
Q 017460 226 KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLS 305 (371)
Q Consensus 226 ~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~ 305 (371)
.++++|++++++++ +++.+.++++.++++|+||||+|+...++.++++++++ |+++.+|.. ..++.... ..+
T Consensus 212 ~~~~lGad~vi~~~---~~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~---~~~~~~~~-~~k 283 (363)
T 4dvj_A 212 WVKSLGAHHVIDHS---KPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQ-GRFCLIDDP---SAFDIMLF-KRK 283 (363)
T ss_dssp HHHHTTCSEEECTT---SCHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTT-CEEEECSCC---SSCCGGGG-TTT
T ss_pred HHHHcCCCEEEeCC---CCHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCC-CEEEEECCC---CccchHHH-hhc
Confidence 99999999999985 36888888874449999999999877889999999997 999999643 23333222 245
Q ss_pred ccEEEecccCCC-----Cc----CCCHHHHHHHHHcCCCCCCcceeeee---cchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 306 GRTLKGSLFGGW-----KP----KTDLPSLVNRYLKKEFMVDEFITHNL---LFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 306 ~~~i~g~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
++++.++..... .+ .+.+.++++++.+|++++. ++++| +++++++||+.+.+++.. |+||++.
T Consensus 284 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~ 359 (363)
T 4dvj_A 284 AVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTT--LTNRLSPINAANLKQAHALVESGTARGKVVIEGF 359 (363)
T ss_dssp TCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCC--EEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred cceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeecc--ccceecCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence 788877543221 00 1346789999999997754 55555 999999999999999887 9999886
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=350.43 Aligned_cols=304 Identities=18% Similarity=0.196 Sum_probs=258.0
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------C------eEEEEEeeCCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------~------~~G~V~~~G~~v~~ 77 (371)
+.+|||++++++++++++.++|.|+|++|||+|||.+++||++|++++.|..+ + ++|+|+++|++|++
T Consensus 5 ~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~ 84 (343)
T 3gaz_A 5 TPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDS 84 (343)
T ss_dssp -CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred chhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCC
Confidence 56799999999998899999999999999999999999999999999988531 1 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
|++||||+++... ..+. .|+|+||++++++.++++|+
T Consensus 85 ~~vGdrV~~~~~g-------------------------~~~~------------------~G~~aey~~v~~~~~~~~P~ 121 (343)
T 3gaz_A 85 FRVGDAVFGLTGG-------------------------VGGL------------------QGTHAQFAAVDARLLASKPA 121 (343)
T ss_dssp CCTTCEEEEECCS-------------------------STTC------------------CCSSBSEEEEEGGGEEECCT
T ss_pred CCCCCEEEEEeCC-------------------------CCCC------------------CcceeeEEEecHHHeeeCCC
Confidence 9999999986210 0001 25899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi 236 (371)
++++++|+++++++.|||+++.+.+++++|++|||+| +|++|++++|+|+..|+ +|+++ +++++++.++++|++. +
T Consensus 122 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i 198 (343)
T 3gaz_A 122 ALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP-I 198 (343)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-E
T ss_pred CCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-e
Confidence 9999999999999999999988889999999999999 59999999999999999 99999 8999999999999998 7
Q ss_pred CCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccC
Q 017460 237 NPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFG 315 (371)
Q Consensus 237 ~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 315 (371)
+ + ..++.+.+++.+++ ++|+|||++|+ ..+..++++++++ |+++.+|.... ++.... ..+++++.++...
T Consensus 199 ~-~--~~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~---~~~~~~-~~~~~~~~g~~~~ 269 (343)
T 3gaz_A 199 D-A--SREPEDYAAEHTAGQGFDLVYDTLGG-PVLDASFSAVKRF-GHVVSCLGWGT---HKLAPL-SFKQATYSGVFTL 269 (343)
T ss_dssp E-T--TSCHHHHHHHHHTTSCEEEEEESSCT-HHHHHHHHHEEEE-EEEEESCCCSC---CCCHHH-HHTTCEEEECCTT
T ss_pred c-c--CCCHHHHHHHHhcCCCceEEEECCCc-HHHHHHHHHHhcC-CeEEEEcccCc---cccchh-hhcCcEEEEEEec
Confidence 7 4 56788999999988 99999999997 5789999999997 99999987642 222222 2468888886542
Q ss_pred CC-----C---cCCCHHHHHHHHHcCCCCCCccee-eeecchhHHHHHHHHHcCCe----e-eEEEeCC
Q 017460 316 GW-----K---PKTDLPSLVNRYLKKEFMVDEFIT-HNLLFEDINQAFNLMKEGKC----L-RSVIHMP 370 (371)
Q Consensus 316 ~~-----~---~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~a~~~~~~~~~----~-kvvi~~~ 370 (371)
.. . ..+++.++++++.+|++++ .++ ++|+++++++||+.+.+++. + |++++.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~ 336 (343)
T 3gaz_A 270 HTLLANEGLAHFGEMLREADALVQTGKLAP--RLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVE 336 (343)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHTTCCCC--CBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC
T ss_pred cchhcccchHHHHHHHHHHHHHHHCCCccc--CccCcEecHHHHHHHHHHHHcCCCcccccceEEEEec
Confidence 11 0 0145788999999999764 566 79999999999999988864 4 9999876
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=355.53 Aligned_cols=305 Identities=18% Similarity=0.275 Sum_probs=250.0
Q ss_pred ceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCC
Q 017460 10 VITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVT 76 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~ 76 (371)
+++|||+++++++++ +++.++|.|+|++|||+|||.+++||++|++++.|.++. ++|+|+++|++|+
T Consensus 1 sm~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (349)
T 4a27_A 1 SMEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVK 80 (349)
T ss_dssp CCCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCC
T ss_pred CceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCC
Confidence 368999999999854 999999999999999999999999999999999986431 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+|++||||+++. .+ |+|+||++++++.++++|
T Consensus 81 ~~~~GdrV~~~~------------------------------~~------------------G~~aey~~v~~~~~~~iP 112 (349)
T 4a27_A 81 GYEIGDRVMAFV------------------------------NY------------------NAWAEVVCTPVEFVYKIP 112 (349)
T ss_dssp SCCTTCEEEEEC------------------------------SS------------------CCSBSEEEEEGGGEEECC
T ss_pred CCCCCCEEEEec------------------------------CC------------------CcceEEEEecHHHeEECC
Confidence 999999999872 22 489999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|..+|++++ ++++++.++ +|++++
T Consensus 113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~ 190 (349)
T 4a27_A 113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHL 190 (349)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEE
Confidence 999999999999999999999888899999999999997 99999999999999654888886 677888888 999999
Q ss_pred eCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCe---------------eecch
Q 017460 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPE---------------VAAHY 300 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~---------------~~~~~ 300 (371)
++ + ..++.+.+++++++++|+||||+|+. .++.++++++++ |+++.+|....... ..+..
T Consensus 191 ~~-~--~~~~~~~~~~~~~~g~Dvv~d~~g~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (349)
T 4a27_A 191 FD-R--NADYVQEVKRISAEGVDIVLDCLCGD-NTGKGLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNP 265 (349)
T ss_dssp EE-T--TSCHHHHHHHHCTTCEEEEEEECC--------CTTEEEE-EEEEEEC-------------------------CH
T ss_pred Ec-C--CccHHHHHHHhcCCCceEEEECCCch-hHHHHHHHhhcC-CEEEEECCCcccccccccccccccccccccccCH
Confidence 98 4 67899999998866999999999985 568999999997 99999987532110 11222
Q ss_pred he-eeeccEEEecccCCCCc--------CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 301 GL-FLSGRTLKGSLFGGWKP--------KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 301 ~~-~~~~~~i~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
.. +.++.++.++.+..+.. .+++.++++++.+|+++ ++++++|+++++++||+.+.+++.. |+||+++
T Consensus 266 ~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~ 343 (349)
T 4a27_A 266 IKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIK--PVVDSLWALEEVKEAMQRIHDRGNIGKLILDVE 343 (349)
T ss_dssp HHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCC--CCEEEEECGGGHHHHHHHHHTTCCSSEEEEETT
T ss_pred HHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCcc--ccccceECHHHHHHHHHHHHhCCCCceEEEecC
Confidence 22 23477888876532111 24578899999999975 5688999999999999999998887 9999986
Q ss_pred C
Q 017460 371 K 371 (371)
Q Consensus 371 ~ 371 (371)
+
T Consensus 344 ~ 344 (349)
T 4a27_A 344 K 344 (349)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=347.11 Aligned_cols=299 Identities=18% Similarity=0.182 Sum_probs=249.9
Q ss_pred cceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCC----------CCC-----eEEEEEee
Q 017460 9 QVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ----------WPQ-----CCRIVESV 71 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~----------~~~-----~~G~V~~~ 71 (371)
.|++|||+++++++++ +++.++|.|+|++|||+|||.+++||++|+++++|. +|. ++|+|+++
T Consensus 3 ~m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~v 82 (321)
T 3tqh_A 3 AMKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIEL 82 (321)
T ss_dssp --CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEE
T ss_pred ccccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEe
Confidence 4578999999998876 999999999999999999999999999999999882 111 69999999
Q ss_pred CCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCc
Q 017460 72 GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC 151 (371)
Q Consensus 72 G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~ 151 (371)
|++|++|++||||++.+...+ . .|+|+||++++++.
T Consensus 83 G~~v~~~~~GdrV~~~~~~~~--------------------------~------------------~G~~aey~~v~~~~ 118 (321)
T 3tqh_A 83 GSDVNNVNIGDKVMGIAGFPD--------------------------H------------------PCCYAEYVCASPDT 118 (321)
T ss_dssp CTTCCSCCTTCEEEEECSTTT--------------------------C------------------CCCSBSEEEECGGG
T ss_pred CCCCCCCCCCCEEEEccCCCC--------------------------C------------------CCcceEEEEecHHH
Confidence 999999999999998741110 1 24899999999999
Q ss_pred eEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 152 AVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 152 ~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
++++|+++++++||++++++.|||+++ +.+++++|++|||+| +|++|++++|+|+.+|+ +|++++ ++++++.++++
T Consensus 119 ~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~l 195 (321)
T 3tqh_A 119 IIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKAL 195 (321)
T ss_dssp EEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHH
T ss_pred hccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHc
Confidence 999999999999999999999999998 889999999999997 69999999999999999 999886 56678999999
Q ss_pred CCceEeCCCCCCch-HHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEE
Q 017460 231 GVTEFLNPNDNNEP-VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTL 309 (371)
Q Consensus 231 g~~~vi~~~~~~~~-~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i 309 (371)
|+++++|++ +.+ +.+.+ .++|+|||++|+. .+..++++++++ |+++.+|...... .. .....++.++
T Consensus 196 Ga~~~i~~~--~~~~~~~~~-----~g~D~v~d~~g~~-~~~~~~~~l~~~-G~iv~~g~~~~~~--~~-~~~~~~~~~~ 263 (321)
T 3tqh_A 196 GAEQCINYH--EEDFLLAIS-----TPVDAVIDLVGGD-VGIQSIDCLKET-GCIVSVPTITAGR--VI-EVAKQKHRRA 263 (321)
T ss_dssp TCSEEEETT--TSCHHHHCC-----SCEEEEEESSCHH-HHHHHGGGEEEE-EEEEECCSTTHHH--HH-HHHHHTTCEE
T ss_pred CCCEEEeCC--Ccchhhhhc-----cCCCEEEECCCcH-HHHHHHHhccCC-CEEEEeCCCCchh--hh-hhhhhcceEE
Confidence 999999987 444 44332 3899999999986 459999999997 9999998653211 11 1122457788
Q ss_pred EecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 310 KGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
.++.... ..+++.++++++.++++++ .++++|+++++++||+.+.+++.. |++|+++
T Consensus 264 ~~~~~~~--~~~~~~~~~~l~~~g~l~~--~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~ 321 (321)
T 3tqh_A 264 FGLLKQF--NIEELHYLGKLVSEDKLRI--EISRIFQLSEAVTAHELLETGHVRGKLVFKVR 321 (321)
T ss_dssp ECCCCCC--CHHHHHHHHHHHHTTSSCC--CEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred EEEecCC--CHHHHHHHHHHHHCCCccc--ccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 7754322 2357899999999999775 478999999999999999999887 9999874
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=353.47 Aligned_cols=307 Identities=17% Similarity=0.215 Sum_probs=253.8
Q ss_pred ceeeeEEEEecCCCC---eEEEEeecCCCC--CCcEEEEEeeecCCcchhhhhcCCC------C---------C-----e
Q 017460 10 VITCKAAVAWGAGQP---LVVEEVEVNPPQ--PEEIRIKVVCTSLCRSDITAWETQW------P---------Q-----C 64 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~---l~~~~~~~p~~~--~~evlV~v~~~~i~~~D~~~~~g~~------~---------~-----~ 64 (371)
|++|||+++++++++ ++++++|.|++. +|||+|||.+++||++|+++++|.+ | . +
T Consensus 1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~ 80 (364)
T 1gu7_A 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG 80 (364)
T ss_dssp CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence 578999999999875 899999998877 9999999999999999999988743 2 2 6
Q ss_pred EEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeE
Q 017460 65 CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEY 144 (371)
Q Consensus 65 ~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~ 144 (371)
+|+|+++|++|++|++||||++.+. . .|+|+||
T Consensus 81 ~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~------------------~G~~aey 113 (364)
T 1gu7_A 81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------N------------------FGTWRTH 113 (364)
T ss_dssp EEEEEEECTTCCSCCTTCEEEESSS-----------------------------C------------------CCCSBSE
T ss_pred EEEEEEeCCCCCcCCCCCEEEecCC-----------------------------C------------------CCcchhe
Confidence 9999999999999999999997620 1 2489999
Q ss_pred EEeeCCceEECCC-----------CCChhhhhhcchhhhhHHhHhhhhcCCCCC-CEEEEEcc-ChHHHHHHHHHHHcCC
Q 017460 145 TVVHSGCAVKVSS-----------IAPLEKICLLSCGLSAGLGAAWNVADISKG-STVVIFGL-GTVGLSVAQGAKARGA 211 (371)
Q Consensus 145 ~~~~~~~~~~~P~-----------~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~-~~VlI~Ga-g~~G~~ai~la~~~G~ 211 (371)
++++++.++++|+ ++++++||++++++.|||+++.+.+++++| ++|||+|+ |++|++++|+|+++|+
T Consensus 114 ~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga 193 (364)
T 1gu7_A 114 ALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF 193 (364)
T ss_dssp EEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC
T ss_pred EecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC
Confidence 9999999999998 899999999999999999998666789999 99999997 9999999999999999
Q ss_pred CEEEEEcCChhh----HHHHHHcCCceEeCCCCCC---chHHHHHHHHh--CC-CccEEEEcCCChHHHHHHHHHhccCC
Q 017460 212 SRIIGVDTNPEK----CEKAKAFGVTEFLNPNDNN---EPVQQVIKRIT--DG-GADYSFECIGDTGMITTALQSCCDGW 281 (371)
Q Consensus 212 ~~vi~~~~~~~~----~~~~~~lg~~~vi~~~~~~---~~~~~~v~~~~--~g-g~dvVid~~g~~~~l~~~~~~l~~~~ 281 (371)
++++++++.++ ++.++++|++++++++ + .++.+.+++++ ++ ++|+|||++|+.. ...++++++++
T Consensus 194 -~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~--~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~-~~~~~~~l~~~- 268 (364)
T 1gu7_A 194 -NSISVIRDRPNLDEVVASLKELGATQVITED--QNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNN- 268 (364)
T ss_dssp -EEEEEECCCTTHHHHHHHHHHHTCSEEEEHH--HHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTT-
T ss_pred -EEEEEecCccccHHHHHHHHhcCCeEEEecC--ccchHHHHHHHHHHhhccCCCceEEEECCCchh-HHHHHHHhccC-
Confidence 88888766654 6778999999999875 3 56788898888 55 9999999999864 44889999997
Q ss_pred ceEEEecCCCCCCeeecchhe-eeeccEEEecccCCCCc------CCCHHHHHHHHHcCCCCCCcceeeee-cchhHHHH
Q 017460 282 GLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFGGWKP------KTDLPSLVNRYLKKEFMVDEFITHNL-LFEDINQA 353 (371)
Q Consensus 282 G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~a 353 (371)
|+++.+|.... ....++... +.+++++.++....+.. .+.+.++++++.+|++++.+..+..+ +++++.+|
T Consensus 269 G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A 347 (364)
T 1gu7_A 269 GLMLTYGGMSF-QPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHEL 347 (364)
T ss_dssp CEEEECCCCSS-CCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHH
T ss_pred CEEEEecCCCC-CCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHH
Confidence 99999997643 223333322 24688998876543211 13578899999999998876544444 45699999
Q ss_pred HHHHHcCCee-eEEEeC
Q 017460 354 FNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 354 ~~~~~~~~~~-kvvi~~ 369 (371)
|+.+.+++.. |+||++
T Consensus 348 ~~~~~~~~~~gKvvv~~ 364 (364)
T 1gu7_A 348 YQDGVANSKDGKQLITY 364 (364)
T ss_dssp HHHHHHTGGGSCEEEEC
T ss_pred HHHHHhCCCCceEEEeC
Confidence 9999888766 999875
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=357.09 Aligned_cols=311 Identities=14% Similarity=0.160 Sum_probs=250.7
Q ss_pred CCcCCCCccceeeeEEEEe--cC---CCCeEEEEe---------ecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---
Q 017460 1 MSTSIKQPQVITCKAAVAW--GA---GQPLVVEEV---------EVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ--- 63 (371)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~--~~---~~~l~~~~~---------~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~--- 63 (371)
||+ ++.+.+|||++++ ++ .+.++++++ |.|+|++|||+|||.+++||++|+++++|.++.
T Consensus 2 Ms~---m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~ 78 (349)
T 3pi7_A 2 MSP---MTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRV 78 (349)
T ss_dssp ------CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBC
T ss_pred CCC---CCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCC
Confidence 554 3467899999999 33 234788888 999999999999999999999999999987531
Q ss_pred --------eEEEEEeeCCCC-CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCccccc
Q 017460 64 --------CCRIVESVGPGV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYH 134 (371)
Q Consensus 64 --------~~G~V~~~G~~v-~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~ 134 (371)
++|+|+++|++| ++|++||||++.. |.. .
T Consensus 79 ~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~--------------------------g~~-~--------------- 116 (349)
T 3pi7_A 79 KGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFAT--------------------------GLS-N--------------- 116 (349)
T ss_dssp TTSBCCSEEEEEEEEECSSHHHHHHTTCEEEEEC--------------------------TTS-S---------------
T ss_pred CCCCccceEEEEEEEECCCccCCCCCCCEEEEec--------------------------cCC-C---------------
Confidence 699999999999 9999999999872 111 2
Q ss_pred ccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCC-CEEEEEc-cChHHHHHHHHHHHcCCC
Q 017460 135 YCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKG-STVVIFG-LGTVGLSVAQGAKARGAS 212 (371)
Q Consensus 135 ~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~-~~VlI~G-ag~~G~~ai~la~~~G~~ 212 (371)
.|+|+||++++++.++++|+++++++||++++.++|||+++ +.++ +++ ++|||+| +|++|++++|+|+++|+
T Consensus 117 ---~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga- 190 (349)
T 3pi7_A 117 ---WGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMF-DIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF- 190 (349)
T ss_dssp ---CCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHH-HHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-
T ss_pred ---CccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHH-HHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-
Confidence 24899999999999999999999999999999999999654 6666 666 6888885 69999999999999999
Q ss_pred EEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 213 RIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 213 ~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+|++++++++|++.++++|+++++|++ +.++.+.+++++++ ++|+||||+|+. .+..++++++++ |+++.+|...
T Consensus 191 ~Vi~~~~~~~~~~~~~~~Ga~~~~~~~--~~~~~~~v~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~ 266 (349)
T 3pi7_A 191 RPIVTVRRDEQIALLKDIGAAHVLNEK--APDFEATLREVMKAEQPRIFLDAVTGP-LASAIFNAMPKR-ARWIIYGRLD 266 (349)
T ss_dssp EEEEEESCGGGHHHHHHHTCSEEEETT--STTHHHHHHHHHHHHCCCEEEESSCHH-HHHHHHHHSCTT-CEEEECCCSC
T ss_pred EEEEEeCCHHHHHHHHHcCCCEEEECC--cHHHHHHHHHHhcCCCCcEEEECCCCh-hHHHHHhhhcCC-CEEEEEeccC
Confidence 999999999999999999999999987 67899999999987 999999999985 578999999997 9999999654
Q ss_pred CCCeeecch--heeeeccEEEecccCCCCc------CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee
Q 017460 292 LKPEVAAHY--GLFLSGRTLKGSLFGGWKP------KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL 363 (371)
Q Consensus 292 ~~~~~~~~~--~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~ 363 (371)
.. ...++. ..+.+++++.+++...+.. .+.+.++++++.+|+++ ++++++|+++++++||+.+.++...
T Consensus 267 ~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~g 343 (349)
T 3pi7_A 267 PD-ATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWS--TDVTAVVPLAEAIAWVPAELTKPNG 343 (349)
T ss_dssp CS-CCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCC--C-CCEEEEHHHHHHHHHHHHTSSSS
T ss_pred CC-CCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcc--cccceEEcHHHHHHHHHHHhCCCCc
Confidence 42 222322 2235689999987643211 13466777788888874 4578999999999999965554334
Q ss_pred eEEEeC
Q 017460 364 RSVIHM 369 (371)
Q Consensus 364 kvvi~~ 369 (371)
|++|++
T Consensus 344 Kvvl~p 349 (349)
T 3pi7_A 344 KVFIRP 349 (349)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999875
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=348.48 Aligned_cols=298 Identities=14% Similarity=0.126 Sum_probs=234.3
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~ 79 (371)
|.||||+++++..+.+++.++|.|+|++|||+|||.+++||++|++++.|.++. ++|+|+++|++|++|+
T Consensus 2 M~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~ 81 (315)
T 3goh_A 2 MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKM 81 (315)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred CcceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence 568999999953344999999999999999999999999999999999886532 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||||++.+. .. .+ |+|+||++++++.++++|+++
T Consensus 82 vGdrV~~~~~--------------------------~~-~~------------------G~~aey~~v~~~~~~~iP~~~ 116 (315)
T 3goh_A 82 LGRRVAYHTS--------------------------LK-RH------------------GSFAEFTVLNTDRVMTLPDNL 116 (315)
T ss_dssp TTCEEEEECC--------------------------TT-SC------------------CSSBSEEEEETTSEEECCTTS
T ss_pred CCCEEEEeCC--------------------------CC-CC------------------cccccEEEEcHHHhccCcCCC
Confidence 9999998731 00 12 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++||+++++++|||+++ +.+++++|++|||+|+|++|++++|+|+++|+ +|++++ +++|+++++++|++++++
T Consensus 117 ~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~-- 191 (315)
T 3goh_A 117 SFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR-- 191 (315)
T ss_dssp CHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES--
T ss_pred CHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc--
Confidence 9999999999999999999 88999999999999999999999999999999 999999 999999999999999883
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecc-hheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAH-YGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~ 318 (371)
+ .+.+ ++++|+||||+|+. .+..++++++++ |+++.+|........... .....++.++.+++.....
T Consensus 192 --d---~~~v----~~g~Dvv~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (315)
T 3goh_A 192 --E---PSQV----TQKYFAIFDAVNSQ-NAAALVPSLKAN-GHIICIQDRIPAPIDPAFTRTISYHEIALGALHDFGDR 260 (315)
T ss_dssp --S---GGGC----CSCEEEEECC--------TTGGGEEEE-EEEEEECCC----------CCSEEEEECGGGHHHHCCH
T ss_pred --C---HHHh----CCCccEEEECCCch-hHHHHHHHhcCC-CEEEEEeCCCCccccchhhhcceeeEEEeecccccCCh
Confidence 1 1222 34999999999985 468899999997 999999764332222111 1111234444444321111
Q ss_pred c-----CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCeeeEEEeCCC
Q 017460 319 P-----KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCLRSVIHMPK 371 (371)
Q Consensus 319 ~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~kvvi~~~~ 371 (371)
. .+.+.++++++.+|+++ ++++++|+++++++||+.+. ....|++|++++
T Consensus 261 ~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~-~~~gKvvi~~~~ 315 (315)
T 3goh_A 261 QDWQILMQQGEALLTLIAQGKME--IAAPDIFRFEQMIEALDHSE-QTKLKTVLTLNE 315 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSC--CCCCEEEEGGGHHHHHHHHH-HHCCCEEEESCC
T ss_pred hHHHHHHHHHHHHHHHHHCCCcc--cccceEecHHHHHHHHHHHH-hcCCcEEEEecC
Confidence 0 12467889999999975 45789999999999999998 333399999875
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=342.24 Aligned_cols=303 Identities=18% Similarity=0.268 Sum_probs=252.3
Q ss_pred ceeeeEEEEecCCCC--eEE-EEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCC
Q 017460 10 VITCKAAVAWGAGQP--LVV-EEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGV 75 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~--l~~-~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v 75 (371)
+.+|||+++++++.+ +++ +++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|++|
T Consensus 27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v 106 (351)
T 1yb5_A 27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA 106 (351)
T ss_dssp -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence 356999999987754 888 79999999999999999999999999999988642 1 699999999999
Q ss_pred CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEEC
Q 017460 76 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV 155 (371)
Q Consensus 76 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~ 155 (371)
++|++||||++.+. .. |+|+||++++++.++++
T Consensus 107 ~~~~vGdrV~~~~~-----------------------------~~------------------G~~aey~~v~~~~~~~~ 139 (351)
T 1yb5_A 107 SAFKKGDRVFTSST-----------------------------IS------------------GGYAEYALAADHTVYKL 139 (351)
T ss_dssp TTCCTTCEEEESCC-----------------------------SS------------------CSSBSEEEEEGGGEEEC
T ss_pred CCCCCCCEEEEeCC-----------------------------CC------------------CcceeEEEECHHHeEEC
Confidence 99999999987520 12 48999999999999999
Q ss_pred CCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 156 SSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 156 P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.
T Consensus 140 P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~ 218 (351)
T 1yb5_A 140 PEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHE 218 (351)
T ss_dssp CTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCE
Confidence 9999999999999999999999977889999999999996 9999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecc
Q 017460 235 FLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSL 313 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~ 313 (371)
++|++ +.++.+.+.+.+++ ++|++||++|.. .+..++++++++ |+++.+|.... ..++.. ..+.+++++.++.
T Consensus 219 ~~d~~--~~~~~~~~~~~~~~~~~D~vi~~~G~~-~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~-~~~~~~~~i~g~~ 292 (351)
T 1yb5_A 219 VFNHR--EVNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLSHG-GRVIVVGSRGT-IEINPR-DTMAKESSIIGVT 292 (351)
T ss_dssp EEETT--STTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEEEE-EEEEECCCCSC-EEECTH-HHHTTTCEEEECC
T ss_pred EEeCC--CchHHHHHHHHcCCCCcEEEEECCChH-HHHHHHHhccCC-CEEEEEecCCC-CccCHH-HHHhCCcEEEEEE
Confidence 99887 56788889888887 999999999974 788999999997 99999996421 222222 1234688998886
Q ss_pred cCCCCcCCCHHH----HHHHHHcCCCCCCcceeeeecchhHHHHHHH-HHcCCee-eEEEeC
Q 017460 314 FGGWKPKTDLPS----LVNRYLKKEFMVDEFITHNLLFEDINQAFNL-MKEGKCL-RSVIHM 369 (371)
Q Consensus 314 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~-~~~~~~~-kvvi~~ 369 (371)
+.... ..++.+ +.+++.+++++ ++++++|+++++++||+. +++++.. |+||++
T Consensus 293 ~~~~~-~~~~~~~~~~l~~~~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~ 351 (351)
T 1yb5_A 293 LFSST-KEEFQQYAAALQAGMEIGWLK--PVIGSQYPLEKVAEAHENIIHGSGATGKMILLL 351 (351)
T ss_dssp GGGCC-HHHHHHHHHHHHHHHHHTCCC--CCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred eecCC-HHHHHHHHHHHHHHHHCCCcc--CccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 43221 123433 44566677754 557899999999999998 5655555 999874
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=341.62 Aligned_cols=305 Identities=22% Similarity=0.286 Sum_probs=257.1
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC--C-----C------eEEEEEeeCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW--P-----Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~--~-----~------~~G~V~~~G~~v~~ 77 (371)
|||+++++++.+ +++.++|.|+|++|||+|||.+++||++|++++.|.+ + + ++|+|+++|++|++
T Consensus 2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~ 81 (333)
T 1wly_A 2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD 81 (333)
T ss_dssp CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence 899999988754 8999999999999999999999999999999998855 1 1 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
|++||||+..+. .. |+|+||++++++.++++|+
T Consensus 82 ~~~GdrV~~~~~-----------------------------~~------------------G~~aey~~v~~~~~~~iP~ 114 (333)
T 1wly_A 82 FTVGERVCTCLP-----------------------------PL------------------GAYSQERLYPAEKLIKVPK 114 (333)
T ss_dssp CCTTCEEEECSS-----------------------------SC------------------CCSBSEEEEEGGGCEECCT
T ss_pred CCCCCEEEEecC-----------------------------CC------------------CcceeEEEecHHHcEeCCC
Confidence 999999976520 02 4899999999999999999
Q ss_pred CCChhh--hhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 158 IAPLEK--ICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 158 ~~~~~~--aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
++++++ ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.
T Consensus 115 ~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~ 193 (333)
T 1wly_A 115 DLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHH 193 (333)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSE
T ss_pred CCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCE
Confidence 999999 89999999999999977889999999999995 9999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-Ceeecchheeeec--cEEE
Q 017460 235 FLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAHYGLFLSG--RTLK 310 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~~--~~i~ 310 (371)
++|++ +.++.+.+.+.+++ ++|++||++|+ ..++.++++++++ |+++.+|..... ..++.....+.++ +++.
T Consensus 194 ~~d~~--~~~~~~~i~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 269 (333)
T 1wly_A 194 TINYS--TQDFAEVVREITGGKGVDVVYDSIGK-DTLQKSLDCLRPR-GMCAAYGHASGVADPIRVVEDLGVRGSLFITR 269 (333)
T ss_dssp EEETT--TSCHHHHHHHHHTTCCEEEEEECSCT-TTHHHHHHTEEEE-EEEEECCCTTCCCCCCCHHHHTTTTTSCEEEC
T ss_pred EEECC--CHHHHHHHHHHhCCCCCeEEEECCcH-HHHHHHHHhhccC-CEEEEEecCCCCcCCCChhHhhhhcCCcEEEE
Confidence 99887 56788888888877 99999999998 5789999999997 999999976532 2232221223457 8888
Q ss_pred ecccCCCCc----CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 311 GSLFGGWKP----KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 311 g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
|+....+.. .+.+.++++++.+++++ ++++++|+++++++||+.+.+++.. |++|++++
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 333 (333)
T 1wly_A 270 PALWHYMSNRSEIDEGSKCLFDAVKAGVLH--SSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA 333 (333)
T ss_dssp CCGGGGSCSHHHHHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred EeehhhccCHHHHHHHHHHHHHHHHCCCcC--CCcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence 875421111 12578899999999875 4578999999999999999888776 99998864
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=349.19 Aligned_cols=306 Identities=20% Similarity=0.298 Sum_probs=249.4
Q ss_pred ccceeeeEEEEecCCCC---eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCC
Q 017460 8 PQVITCKAAVAWGAGQP---LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGP 73 (371)
Q Consensus 8 ~~~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~ 73 (371)
.++.+|||+++.+++.+ ++++++|.|+|+++||+|||.|++||++|++++.|.++ + ++|+|+++|+
T Consensus 22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~ 101 (357)
T 1zsy_A 22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGS 101 (357)
T ss_dssp CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECT
T ss_pred hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCC
Confidence 35678999999999875 88999999999999999999999999999999988542 1 6999999999
Q ss_pred CCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceE
Q 017460 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV 153 (371)
Q Consensus 74 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~ 153 (371)
+|++|++||||++.+ .+ .|+|+||++++++.++
T Consensus 102 ~v~~~~vGdrV~~~~-------------------------------~~----------------~G~~aey~~v~~~~~~ 134 (357)
T 1zsy_A 102 NVTGLKPGDWVIPAN-------------------------------AG----------------LGTWRTEAVFSEEALI 134 (357)
T ss_dssp TCCSCCTTCEEEESS-------------------------------SC----------------SCCSBSEEEEEGGGEE
T ss_pred CCCCCCCCCEEEEcC-------------------------------CC----------------CccceeEEecCHHHcE
Confidence 999999999999762 11 2489999999999999
Q ss_pred ECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh----hhHHHHH
Q 017460 154 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----EKCEKAK 228 (371)
Q Consensus 154 ~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~----~~~~~~~ 228 (371)
++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +++++.+++ ++++.++
T Consensus 135 ~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~ 213 (357)
T 1zsy_A 135 QVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLK 213 (357)
T ss_dssp EECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHH
T ss_pred ECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHH
Confidence 999999999999999889999999877789999999999997 9999999999999999 777665543 3567889
Q ss_pred HcCCceEeCCCCCCchHHHHHHHHhCC--CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eee
Q 017460 229 AFGVTEFLNPNDNNEPVQQVIKRITDG--GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLS 305 (371)
Q Consensus 229 ~lg~~~vi~~~~~~~~~~~~v~~~~~g--g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~ 305 (371)
++|++++++++ +...+.+.+.+++ ++|+|||++|+. ....++++++++ |+++.+|.... ....++... +.+
T Consensus 214 ~lGa~~vi~~~---~~~~~~~~~~~~~~~~~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~ 287 (357)
T 1zsy_A 214 SLGAEHVITEE---ELRRPEMKNFFKDMPQPRLALNCVGGK-SSTELLRQLARG-GTMVTYGGMAK-QPVVASVSLLIFK 287 (357)
T ss_dssp HTTCSEEEEHH---HHHSGGGGGTTSSSCCCSEEEESSCHH-HHHHHHTTSCTT-CEEEECCCCTT-CCBCCCHHHHHHS
T ss_pred hcCCcEEEecC---cchHHHHHHHHhCCCCceEEEECCCcH-HHHHHHHhhCCC-CEEEEEecCCC-CCCCCCHHHHHhc
Confidence 99999999763 1122345566654 599999999975 456789999997 99999986533 222333222 246
Q ss_pred ccEEEecccCCCCc-------CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 306 GRTLKGSLFGGWKP-------KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 306 ~~~i~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
++++.+++...+.. ++.+.++++++.+|++++. +.++|+++++++||+.+.+++.. |+||++
T Consensus 288 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 357 (357)
T 1zsy_A 288 DLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--ACSQVPLQDYQSALEASMKPFISSKQILTM 357 (357)
T ss_dssp CCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCC--CEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred CceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCc--cceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence 89999886542210 1346788999999998765 45899999999999999888766 999874
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-45 Score=342.68 Aligned_cols=307 Identities=20% Similarity=0.264 Sum_probs=257.9
Q ss_pred cceeeeEEEEecCCC----CeEE-EEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeC
Q 017460 9 QVITCKAAVAWGAGQ----PLVV-EEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVG 72 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~----~l~~-~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G 72 (371)
.+.+|||+++++++. .+++ +++|.|+|++|||+|||.|++||++|++++.|.++ + ++|+|+++|
T Consensus 20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG 99 (362)
T 2c0c_A 20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG 99 (362)
T ss_dssp HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence 467899999999875 3889 99999999999999999999999999999988652 1 699999999
Q ss_pred CCCC-CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCc
Q 017460 73 PGVT-EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC 151 (371)
Q Consensus 73 ~~v~-~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~ 151 (371)
++|+ .|++||||++. .+ |+|+||++++++.
T Consensus 100 ~~V~~~~~vGdrV~~~-------------------------------~~------------------G~~aey~~v~~~~ 130 (362)
T 2c0c_A 100 LSASARYTVGQAVAYM-------------------------------AP------------------GSFAEYTVVPASI 130 (362)
T ss_dssp TTGGGTCCTTCEEEEE-------------------------------CS------------------CCSBSEEEEEGGG
T ss_pred CCccCCCCCCCEEEEc-------------------------------cC------------------CcceeEEEEcHHH
Confidence 9999 99999999986 22 3899999999999
Q ss_pred eEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 152 AVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 152 ~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
++++|+. + .++++++++++|||+++.+.+++++|++|||+| +|++|++++|+|+..|+ +|+++++++++++.++++
T Consensus 131 ~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~ 207 (362)
T 2c0c_A 131 ATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSL 207 (362)
T ss_dssp CEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred eEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHc
Confidence 9999996 3 466777789999999997788999999999999 59999999999999999 999999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC------ee---ecchh
Q 017460 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP------EV---AAHYG 301 (371)
Q Consensus 231 g~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~------~~---~~~~~ 301 (371)
|++.+++++ +.++.+.+++.+++++|+|||++|. ..++.++++++++ |+++.+|...... .+ .++..
T Consensus 208 Ga~~~~~~~--~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~ 283 (362)
T 2c0c_A 208 GCDRPINYK--TEPVGTVLKQEYPEGVDVVYESVGG-AMFDLAVDALATK-GRLIVIGFISGYQTPTGLSPVKAGTLPAK 283 (362)
T ss_dssp TCSEEEETT--TSCHHHHHHHHCTTCEEEEEECSCT-HHHHHHHHHEEEE-EEEEECCCGGGTTSSSCCCCCCCTTHHHH
T ss_pred CCcEEEecC--ChhHHHHHHHhcCCCCCEEEECCCH-HHHHHHHHHHhcC-CEEEEEeCCCCcCcccccccccccccHHH
Confidence 999999887 5678888888775599999999998 5789999999997 9999998754311 00 11222
Q ss_pred eeeeccEEEecccCCCCc--CCCHHHHHHHHHcCCCCCCcc------eeeeecchhHHHHHHHHHcCCee-eEEEeCCC
Q 017460 302 LFLSGRTLKGSLFGGWKP--KTDLPSLVNRYLKKEFMVDEF------ITHNLLFEDINQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 302 ~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
.+.++.++.|+....+.. .+.+.++++++.+|++++... +++.|+++++++||+.+.+++.. |++|++++
T Consensus 284 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 362 (362)
T 2c0c_A 284 LLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH 362 (362)
T ss_dssp HHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred HHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence 335688999887644321 245788999999999876533 34678999999999999888766 99998864
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=334.51 Aligned_cols=299 Identities=18% Similarity=0.181 Sum_probs=252.8
Q ss_pred eeeeEEEEec------CCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC----CC---------eEEEEEee
Q 017460 11 ITCKAAVAWG------AGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW----PQ---------CCRIVESV 71 (371)
Q Consensus 11 ~~~~a~~~~~------~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~----~~---------~~G~V~~~ 71 (371)
++|||+++++ ..+.++++++|.|+|++|||+|||.+++||++|+..+.+.. |. ++|+|++
T Consensus 6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~~~p~~~G~e~g~~~~G~V~~- 84 (336)
T 4b7c_A 6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSYIPPVGIGEVMRALGVGKVLV- 84 (336)
T ss_dssp CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCSSCCCCTTSBCCCEEEEEEEE-
T ss_pred ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccccCCCCCCCcccCCceEEEEEe-
Confidence 6799999986 12349999999999999999999999999999988776532 11 4999999
Q ss_pred CCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCc
Q 017460 72 GPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGC 151 (371)
Q Consensus 72 G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~ 151 (371)
+++++|++||||++. |+|+||++++++.
T Consensus 85 -~~v~~~~vGdrV~~~---------------------------------------------------G~~aey~~v~~~~ 112 (336)
T 4b7c_A 85 -SKHPGFQAGDYVNGA---------------------------------------------------LGVQDYFIGEPKG 112 (336)
T ss_dssp -ECSTTCCTTCEEEEE---------------------------------------------------CCSBSEEEECCTT
T ss_pred -cCCCCCCCCCEEecc---------------------------------------------------CCceEEEEechHH
Confidence 458899999999965 4899999999999
Q ss_pred eEECCCCCChhhh--hhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-
Q 017460 152 AVKVSSIAPLEKI--CLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA- 227 (371)
Q Consensus 152 ~~~~P~~~~~~~a--a~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~- 227 (371)
++++|+++++.++ ++++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.+
T Consensus 113 ~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~ 191 (336)
T 4b7c_A 113 FYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV 191 (336)
T ss_dssp CEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred eEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 9999999977776 7888899999999988899999999999997 9999999999999999 999999999999999
Q ss_pred HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-----Ceeecchhe
Q 017460 228 KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-----PEVAAHYGL 302 (371)
Q Consensus 228 ~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~ 302 (371)
+++|++.++|++ +.++.+.+.+.+++++|++||++|+ ..++.++++++++ |+++.+|..... ....++...
T Consensus 192 ~~~g~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~ 267 (336)
T 4b7c_A 192 EELGFDGAIDYK--NEDLAAGLKRECPKGIDVFFDNVGG-EILDTVLTRIAFK-ARIVLCGAISQYNNKEAVRGPANYLS 267 (336)
T ss_dssp HTTCCSEEEETT--TSCHHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCGGGGC------CCTTTTH
T ss_pred HHcCCCEEEECC--CHHHHHHHHHhcCCCceEEEECCCc-chHHHHHHHHhhC-CEEEEEeecccccCCcccccchhHHH
Confidence 899999999987 6789999999886699999999997 5789999999997 999999876421 011222222
Q ss_pred -eeeccEEEecccCCCCc--CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 303 -FLSGRTLKGSLFGGWKP--KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 303 -~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+.+++++.++....+.. .+.+.++++++.+|++++... .+|+++++++||+.+.+++.. |+||++
T Consensus 268 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 336 (336)
T 4b7c_A 268 LLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSRED--IVEGLETFPETLLKLFSGENFGKLVLKV 336 (336)
T ss_dssp HHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEE--EEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred HHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCccccee--eecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence 24688999987655421 146788999999999887744 568999999999999999887 999975
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-45 Score=335.91 Aligned_cols=303 Identities=18% Similarity=0.210 Sum_probs=253.1
Q ss_pred eeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC----C------eEEEEEeeCCCCCCCC
Q 017460 12 TCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----Q------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 12 ~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~----~------~~G~V~~~G~~v~~~~ 79 (371)
+|||+++++++.+ +++.++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++|++|++|+
T Consensus 1 ~Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (327)
T 1qor_A 1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIK 80 (327)
T ss_dssp -CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred CcEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCC
Confidence 3899999988754 89999999999999999999999999999999988542 1 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+|||| +.. +. . .|+|+||++++++.++++|+++
T Consensus 81 ~GdrV-~~~----g~------------------------~------------------~G~~aey~~v~~~~~~~iP~~l 113 (327)
T 1qor_A 81 AGDRV-VYA----QS------------------------A------------------LGAYSSVHNIIADKAAILPAAI 113 (327)
T ss_dssp TTCEE-EES----CC------------------------S------------------SCCSBSEEEEEGGGEEECCTTS
T ss_pred CCCEE-EEC----CC------------------------C------------------CceeeeEEEecHHHcEECCCCC
Confidence 99999 431 00 1 1489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++++||+++++++|||+++.+.+++++|++|||+| +|++|++++|+++..|+ +|+++++++++++.++++|++.++|+
T Consensus 114 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~ 192 (327)
T 1qor_A 114 SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINY 192 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999997688999999999998 59999999999999999 99999999999999999999999988
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-Ceeecchheeee-ccEEEecccC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAHYGLFLS-GRTLKGSLFG 315 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~-~~~i~g~~~~ 315 (371)
+ +.++.+.+.+.+++ ++|++||++| ...++.++++++++ |+++.+|..... ..++.... +.+ +.++.+...+
T Consensus 193 ~--~~~~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 267 (327)
T 1qor_A 193 R--EEDLVERLKEITGGKKVRVVYDSVG-RDTWERSLDCLQRR-GLMVSFGNSSGAVTGVNLGIL-NQKGSLYVTRPSLQ 267 (327)
T ss_dssp T--TSCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHHTEEEE-EEEEECCCTTCCCCCBCTHHH-HHTTSCEEECCCHH
T ss_pred C--CccHHHHHHHHhCCCCceEEEECCc-hHHHHHHHHHhcCC-CEEEEEecCCCCCCccCHHHH-hhccceEEEccchh
Confidence 7 56788888888877 8999999999 46899999999997 999999976542 12332222 234 5666654321
Q ss_pred CCC-----cCCCHHHHHHHHHcCCCCCCccee--eeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 316 GWK-----PKTDLPSLVNRYLKKEFMVDEFIT--HNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 316 ~~~-----~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
.+. ..+.+.++++++.++++++ .++ ++|+++++++||+.+.+++.. |++|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 327 (327)
T 1qor_A 268 GYITTREELTEASNELFSLIASGVIKV--DVAEQQKYPLKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTTSSCC--CCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCccc--ccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 111 0234778999999999765 477 899999999999999888766 999864
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-46 Score=342.62 Aligned_cols=302 Identities=15% Similarity=0.135 Sum_probs=249.3
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~ 79 (371)
|||+++++++++ ++++++|.|+|++|||+|||.+++||++|++++.|.++. ++|+|+++| +++|+
T Consensus 1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~ 78 (324)
T 3nx4_A 1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH 78 (324)
T ss_dssp CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence 899999999976 889999999999999999999999999999999986541 699999998 57899
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||||++.+ |. .|.. . .|+|+||++++++.++++|+++
T Consensus 79 vGdrV~~~~---~~--------------------~g~~-~------------------~G~~aey~~v~~~~~~~iP~~~ 116 (324)
T 3nx4_A 79 AGQEVLLTG---WG--------------------VGEN-H------------------WGGLAERARVKGDWLVALPAGL 116 (324)
T ss_dssp TTCEEEEEC---TT--------------------BTTT-B------------------CCSSBSEEEECGGGCEECCTTC
T ss_pred CCCEEEEcc---cc--------------------cCCC-C------------------CCceeeEEecCHHHcEECCCCC
Confidence 999999863 10 1111 2 2489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhh--hhcCCCCCC-EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE
Q 017460 160 PLEKICLLSCGLSAGLGAAW--NVADISKGS-TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF 235 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~--~~~~~~~~~-~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v 235 (371)
++++||++++.+.|||+++. ...++++++ +|||+|+ |++|++++|+|+++|+ +|++++++++|++.++++|++++
T Consensus 117 ~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v 195 (324)
T 3nx4_A 117 SSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRI 195 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEE
T ss_pred CHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEE
Confidence 99999999999999998874 445566633 4999997 9999999999999999 99999999999999999999999
Q ss_pred eCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEeccc
Q 017460 236 LNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLF 314 (371)
Q Consensus 236 i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~ 314 (371)
+|+++ .+. +++++++++|+|||++|+. .++.++++++++ |+++.+|.... ...+++... +.+++++.++..
T Consensus 196 i~~~~--~~~---~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~g~~~ 267 (324)
T 3nx4_A 196 LSRDE--FAE---SRPLEKQLWAGAIDTVGDK-VLAKVLAQMNYG-GCVAACGLAGG-FALPTTVMPFILRNVRLQGVDS 267 (324)
T ss_dssp EEGGG--SSC---CCSSCCCCEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTTC-SEEEEESHHHHHHCCEEEECCS
T ss_pred EecCC--HHH---HHhhcCCCccEEEECCCcH-HHHHHHHHHhcC-CEEEEEecCCC-CCCCCCHHHHhhcCeEEEEEec
Confidence 98863 222 4555556999999999985 899999999997 99999998754 233333322 356899999865
Q ss_pred CCCCc---CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 315 GGWKP---KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 315 ~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
..... .+.+.++++++.+|++++ + +++|+++++++||+.+.+++.. |++|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~l~~~g~l~~--~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~ 324 (324)
T 3nx4_A 268 VMTPPARRAEAWARLVKDLPESFYAQ--A-ATEITLADAPKFADAIINNQVQGRTLVKIK 324 (324)
T ss_dssp TTCCHHHHHHHHHHHHHHSCHHHHHH--H-EEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred cccChHHHHHHHHHHHHHHHcCCCCC--C-ceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence 43321 134677788888888654 4 7999999999999999999887 9999874
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=332.69 Aligned_cols=305 Identities=19% Similarity=0.231 Sum_probs=245.8
Q ss_pred ccceeeeEEEEecCCCC--eEE-EEeecCCC-CCCcEEEEEeeecCCcchhhhhcCC--------------------CCC
Q 017460 8 PQVITCKAAVAWGAGQP--LVV-EEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQ--------------------WPQ 63 (371)
Q Consensus 8 ~~~~~~~a~~~~~~~~~--l~~-~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~--------------------~~~ 63 (371)
+++++|||+++++++.+ +++ +++|.|++ ++|||+|||.|++||++|++++.|. +|.
T Consensus 17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~ 96 (375)
T 2vn8_A 17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL 96 (375)
T ss_dssp -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence 45778999999998754 888 89999985 9999999999999999999998874 121
Q ss_pred -----eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCc
Q 017460 64 -----CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAV 138 (371)
Q Consensus 64 -----~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~ 138 (371)
++|+|+++|++|++|++||||++.+.. . . .
T Consensus 97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~--------------------------~-~------------------~ 131 (375)
T 2vn8_A 97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVPP--------------------------W-K------------------Q 131 (375)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEEECCT--------------------------T-S------------------C
T ss_pred ccceeeeEEEEEeCCCCCCCCCCCEEEEecCC--------------------------C-C------------------C
Confidence 699999999999999999999987310 0 1 2
Q ss_pred cceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcC----CCCCCEEEEEc-cChHHHHHHHHHHHcCCCE
Q 017460 139 SSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD----ISKGSTVVIFG-LGTVGLSVAQGAKARGASR 213 (371)
Q Consensus 139 g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~----~~~~~~VlI~G-ag~~G~~ai~la~~~G~~~ 213 (371)
|+|+||++++++.++++|+++++++||++++++.|||+++.+.++ +++|++|||+| +|++|++++|+|+++|+ +
T Consensus 132 G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~ 210 (375)
T 2vn8_A 132 GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-H 210 (375)
T ss_dssp CSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-E
T ss_pred ccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-E
Confidence 489999999999999999999999999999899999999877788 99999999998 59999999999999999 9
Q ss_pred EEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh-HHHHHHHHHhccCCceEEEecCCCC
Q 017460 214 IIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT-GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 214 vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~-~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
|++++ ++++++.++++|++.++|++ +.++.+.+.+. +++|+|||++|+. ..+..++++++++ |+++.+|....
T Consensus 211 Vi~~~-~~~~~~~~~~lGa~~v~~~~--~~~~~~~~~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~~ 284 (375)
T 2vn8_A 211 VTAVC-SQDASELVRKLGADDVIDYK--SGSVEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSG-ATYVTLVTPFL 284 (375)
T ss_dssp EEEEE-CGGGHHHHHHTTCSEEEETT--SSCHHHHHHTS--CCBSEEEESSCTTHHHHGGGGBCSSSC-CEEEESCCSHH
T ss_pred EEEEe-ChHHHHHHHHcCCCEEEECC--chHHHHHHhhc--CCCCEEEECCCChhhhhHHHHHhhcCC-cEEEEeCCCcc
Confidence 99987 67899999999999999987 55676666542 4899999999986 4568888999997 99999986432
Q ss_pred CCeee---cch-------heee-------eccEEEecccCCCCcCCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHH
Q 017460 293 KPEVA---AHY-------GLFL-------SGRTLKGSLFGGWKPKTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFN 355 (371)
Q Consensus 293 ~~~~~---~~~-------~~~~-------~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~ 355 (371)
. ... +.. ..+. ++..+..... ....+.+.++++++.+|+++ ++++++|+++++++||+
T Consensus 285 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~ 359 (375)
T 2vn8_A 285 L-NMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF--MASGPCLDDIAELVDAGKIR--PVIEQTFPFSKVPEAFL 359 (375)
T ss_dssp H-HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC--CCCHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHH
T ss_pred c-ccccccccchhheeehhhccccccccccCcceEEEEe--CCCHHHHHHHHHHHHCCCcc--cCcCeEECHHHHHHHHH
Confidence 1 110 000 0001 2223322211 11123578899999999875 56789999999999999
Q ss_pred HHHcCCee-eEEEeC
Q 017460 356 LMKEGKCL-RSVIHM 369 (371)
Q Consensus 356 ~~~~~~~~-kvvi~~ 369 (371)
.+.+++.. |+||++
T Consensus 360 ~~~~~~~~gKvvi~~ 374 (375)
T 2vn8_A 360 KVERGHARGKTVINV 374 (375)
T ss_dssp HHHHCCCSSEEEEEC
T ss_pred HHHcCCCCCeEEEEe
Confidence 99888766 999976
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=339.74 Aligned_cols=303 Identities=13% Similarity=0.167 Sum_probs=246.5
Q ss_pred cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC---------------------------
Q 017460 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW--------------------------- 61 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~--------------------------- 61 (371)
...+|||++.......++++++|.|+++++||+|||.+++||++|+++++|.+
T Consensus 4 ~~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~ 83 (379)
T 3iup_A 4 SALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRS 83 (379)
T ss_dssp EEEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHH
T ss_pred chhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccc
Confidence 35789999986554559999999999999999999999999999999988752
Q ss_pred -------CC-----eEEEEEeeCCCC-CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceecc
Q 017460 62 -------PQ-----CCRIVESVGPGV-TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIK 128 (371)
Q Consensus 62 -------~~-----~~G~V~~~G~~v-~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~ 128 (371)
|. ++|+|+++|++| ++|++||||++. .+
T Consensus 84 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~-------------------------------~~-------- 124 (379)
T 3iup_A 84 MAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAI-------------------------------GG-------- 124 (379)
T ss_dssp HGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEEC-------------------------------CS--------
T ss_pred cccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEec-------------------------------CC--------
Confidence 11 699999999999 889999999986 33
Q ss_pred CcccccccCccceeeEEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE--ccChHHHHHHHHH
Q 017460 129 GKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF--GLGTVGLSVAQGA 206 (371)
Q Consensus 129 ~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~--Gag~~G~~ai~la 206 (371)
|+|+||++++++.++++|+++++++|+++++.+.|||+++ +... ++|++|||+ |+|++|++++|+|
T Consensus 125 ----------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~a 192 (379)
T 3iup_A 125 ----------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQIC 192 (379)
T ss_dssp ----------CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHHH
T ss_pred ----------CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHHH
Confidence 3899999999999999999999999999999999999876 5555 899999999 5699999999999
Q ss_pred HHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhc-----cC
Q 017460 207 KARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCC-----DG 280 (371)
Q Consensus 207 ~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~-----~~ 280 (371)
+++|+ +|++++++++|++.++++|+++++|++ +.++.+.+++++++ ++|+||||+|+...++.++++++ ++
T Consensus 193 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~--~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~ 269 (379)
T 3iup_A 193 LKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAA--SPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSA 269 (379)
T ss_dssp HHHTC-CEEEEESSHHHHHHHHHTTCSCEEETT--STTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTC
T ss_pred HHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCC--ChHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccc
Confidence 99999 899999999999999999999999997 67899999999988 99999999998767788888875 43
Q ss_pred Cce-----------EEEecCCCCCCeeecchheeeeccEEEecccCCCCc---CCCH----HHHHHHHHcCCCCCCccee
Q 017460 281 WGL-----------AVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKP---KTDL----PSLVNRYLKKEFMVDEFIT 342 (371)
Q Consensus 281 ~G~-----------~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~i~ 342 (371)
|+ ++.+|.... ...++.. .+.+++++.|+.+..+.. .+.+ .++++++.+ . +.++++
T Consensus 270 -G~~~~~G~~~~g~iv~~G~~~~-~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--l~~~i~ 343 (379)
T 3iup_A 270 -REYSRYGSTTHKQVYLYGGLDT-SPTEFNR-NFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT-T--FASHYS 343 (379)
T ss_dssp -CSCCTTCCCSCEEEEECCCSEE-EEEEECC-CSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT-T--TCCCCS
T ss_pred -cceeecccccCceEEEecCCCC-Ccccccc-ccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc-c--CCCcce
Confidence 44 444443321 2233322 234688888886654311 1122 334444444 2 556678
Q ss_pred eeecchhH--HHHHHHHHcCCee-eEEEeCCC
Q 017460 343 HNLLFEDI--NQAFNLMKEGKCL-RSVIHMPK 371 (371)
Q Consensus 343 ~~~~~~~~--~~a~~~~~~~~~~-kvvi~~~~ 371 (371)
++|+|+++ ++||+.+.+++.. |+||++++
T Consensus 344 ~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~ 375 (379)
T 3iup_A 344 KEISLAEVLDLDMIAVYNKRATGEKYLINPNK 375 (379)
T ss_dssp EEEEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred EEecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence 99999999 9999999988777 99999864
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=325.16 Aligned_cols=306 Identities=17% Similarity=0.230 Sum_probs=252.9
Q ss_pred CccceeeeEEEE-ecC---CC----CeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcC----CC--C----C----
Q 017460 7 QPQVITCKAAVA-WGA---GQ----PLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWET----QW--P----Q---- 63 (371)
Q Consensus 7 ~~~~~~~~a~~~-~~~---~~----~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g----~~--~----~---- 63 (371)
++++++|||+++ +++ |. .++++++|.|++ ++|||+|||.+++||++|++.+.+ .+ + .
T Consensus 3 ~~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~ 82 (357)
T 2zb4_A 3 AAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG 82 (357)
T ss_dssp ---CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred CcccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence 346889999999 565 43 399999999999 999999999999999999887765 22 1 1
Q ss_pred -eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCcccee
Q 017460 64 -CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFS 142 (371)
Q Consensus 64 -~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a 142 (371)
++|+|++ ++|++|++||||++.. |+|+
T Consensus 83 E~~G~V~~--~~v~~~~vGdrV~~~~--------------------------------------------------G~~a 110 (357)
T 2zb4_A 83 GGIGIIEE--SKHTNLTKGDFVTSFY--------------------------------------------------WPWQ 110 (357)
T ss_dssp EEEEEEEE--ECSTTCCTTCEEEEEE--------------------------------------------------EESB
T ss_pred cEEEEEEe--cCCCCCCCCCEEEecC--------------------------------------------------CCcE
Confidence 6999999 8899999999999761 3799
Q ss_pred eEEEeeCCceEECCCCC-----ChhhhhhcchhhhhHHhHhhhhcCCCCC--CEEEEEcc-ChHHHHHHHHHHHcCCCEE
Q 017460 143 EYTVVHSGCAVKVSSIA-----PLEKICLLSCGLSAGLGAAWNVADISKG--STVVIFGL-GTVGLSVAQGAKARGASRI 214 (371)
Q Consensus 143 ~~~~~~~~~~~~~P~~~-----~~~~aa~~~~~~~~a~~~l~~~~~~~~~--~~VlI~Ga-g~~G~~ai~la~~~G~~~v 214 (371)
||++++++.++++|+++ +.+ +++++++++|||+++.+.+++++| ++|||+|+ |++|++++|+++..|+++|
T Consensus 111 ey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~V 189 (357)
T 2zb4_A 111 TKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRV 189 (357)
T ss_dssp SEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEE
T ss_pred EEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeE
Confidence 99999999999999999 555 677888999999999788999999 99999997 9999999999999998789
Q ss_pred EEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC
Q 017460 215 IGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK 293 (371)
Q Consensus 215 i~~~~~~~~~~~~~~-lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~ 293 (371)
+++++++++++.+++ +|++.++|++ +.++.+.+.+.+++++|++||++|. ..++.++++++++ |+++.+|.....
T Consensus 190 i~~~~~~~~~~~~~~~~g~~~~~d~~--~~~~~~~~~~~~~~~~d~vi~~~G~-~~~~~~~~~l~~~-G~iv~~G~~~~~ 265 (357)
T 2zb4_A 190 VGICGTHEKCILLTSELGFDAAINYK--KDNVAEQLRESCPAGVDVYFDNVGG-NISDTVISQMNEN-SHIILCGQISQY 265 (357)
T ss_dssp EEEESCHHHHHHHHHTSCCSEEEETT--TSCHHHHHHHHCTTCEEEEEESCCH-HHHHHHHHTEEEE-EEEEECCCGGGT
T ss_pred EEEeCCHHHHHHHHHHcCCceEEecC--chHHHHHHHHhcCCCCCEEEECCCH-HHHHHHHHHhccC-cEEEEECCcccc
Confidence 999999999999886 9999999887 5678888888876689999999997 5789999999997 999999875431
Q ss_pred -Ceeecc--------hheeeeccEEEecccCCCCc--CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCe
Q 017460 294 -PEVAAH--------YGLFLSGRTLKGSLFGGWKP--KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKC 362 (371)
Q Consensus 294 -~~~~~~--------~~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~ 362 (371)
..+++. ...+.+++++.++....+.. .+.+.++++++.+|++++... .+|+|+++++||+.+.+++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~l~~~~~A~~~~~~~~~ 343 (357)
T 2zb4_A 266 NKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKET--VINGLENMGAAFQSMMTGGN 343 (357)
T ss_dssp TSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCCEE--EEECGGGHHHHHHHHHTTCC
T ss_pred ccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCccc--eecCHHHHHHHHHHHHcCCC
Confidence 122221 12234688998876543221 245788999999999887644 56999999999999988876
Q ss_pred e-eEEEeCCC
Q 017460 363 L-RSVIHMPK 371 (371)
Q Consensus 363 ~-kvvi~~~~ 371 (371)
. |+||++++
T Consensus 344 ~gKvvi~~~~ 353 (357)
T 2zb4_A 344 IGKQIVCISE 353 (357)
T ss_dssp SBEEEEECCC
T ss_pred CceEEEEEec
Confidence 6 99998753
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=332.71 Aligned_cols=308 Identities=17% Similarity=0.167 Sum_probs=241.1
Q ss_pred cceeeeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCC
Q 017460 9 QVITCKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGV 75 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v 75 (371)
++.+|||+++++++. .++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++ ++
T Consensus 1 m~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v 78 (330)
T 1tt7_A 1 MSTLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--ND 78 (330)
T ss_dssp -CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SS
T ss_pred CCCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CC
Confidence 356899999998873 489999999999999999999999999999999988532 1 69999996 46
Q ss_pred CCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEEC
Q 017460 76 TEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV 155 (371)
Q Consensus 76 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~ 155 (371)
++|++||||++.+.. .|.. . .|+|+||++++++.++++
T Consensus 79 ~~~~vGdrV~~~~~~-----------------------~g~~-~------------------~G~~aey~~v~~~~~~~i 116 (330)
T 1tt7_A 79 PRFAEGDEVIATSYE-----------------------LGVS-R------------------DGGLSEYASVPGDWLVPL 116 (330)
T ss_dssp TTCCTTCEEEEESTT-----------------------BTTT-B------------------CCSSBSSEEECGGGEEEC
T ss_pred CCCCCCCEEEEcccc-----------------------cCCC-C------------------CccceeEEEecHHHeEEC
Confidence 889999999986310 1111 1 248999999999999999
Q ss_pred CCCCChhhhhhcchhhhhHHhHhh--hhcCCCCCC-EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC
Q 017460 156 SSIAPLEKICLLSCGLSAGLGAAW--NVADISKGS-TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG 231 (371)
Q Consensus 156 P~~~~~~~aa~~~~~~~~a~~~l~--~~~~~~~~~-~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg 231 (371)
|+++++++||++++++.||+.++. +.+++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|++.++++|
T Consensus 117 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lG 195 (330)
T 1tt7_A 117 PQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLG 195 (330)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHT
T ss_pred CCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC
Confidence 999999999999999999998764 456788986 9999997 9999999999999999 8999999999999999999
Q ss_pred CceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEE
Q 017460 232 VTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLK 310 (371)
Q Consensus 232 ~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~ 310 (371)
+++++|++ +.+ .+.+++++++++|+|||++|+ ..+..++++++++ |+++.+|.... ....++... +.+++++.
T Consensus 196 a~~v~~~~--~~~-~~~~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~ 269 (330)
T 1tt7_A 196 ASEVISRE--DVY-DGTLKALSKQQWQGAVDPVGG-KQLASLLSKIQYG-GSVAVSGLTGG-GEVPATVYPFILRGVSLL 269 (330)
T ss_dssp CSEEEEHH--HHC-SSCCCSSCCCCEEEEEESCCT-HHHHHHHTTEEEE-EEEEECCCSSC-SCEEECSHHHHTSCCEEE
T ss_pred CcEEEECC--Cch-HHHHHHhhcCCccEEEECCcH-HHHHHHHHhhcCC-CEEEEEecCCC-CccCcchHHHHhcCeEEE
Confidence 99998764 111 112233344489999999998 4799999999997 99999997654 223333222 35689998
Q ss_pred ecccCCCCc---CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 311 GSLFGGWKP---KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 311 g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
|+....... .+.+.++++++.++++ +++++++|+++++++||+.+.+++.. |++|++
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 330 (330)
T 1tt7_A 270 GIDSVYCPMDVRAAVWERMSSDLKPDQL--LTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330 (330)
T ss_dssp ECCSSSCCHHHHHHHHHHTTTTSCCSCS--TTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred EEeccccCHHHHHHHHHHHHHHHhcCCc--ccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 875322211 0123334444455654 45678999999999999999888766 999864
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=327.05 Aligned_cols=305 Identities=17% Similarity=0.186 Sum_probs=236.4
Q ss_pred eeeeEEEEecCCC--CeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCC
Q 017460 11 ITCKAAVAWGAGQ--PLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTE 77 (371)
Q Consensus 11 ~~~~a~~~~~~~~--~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~ 77 (371)
.+|||+++++++. .++++++|.|+|+++||+|||.+++||++|++++.|.++ + ++|+|+++ ++++
T Consensus 2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~ 79 (328)
T 1xa0_A 2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPR 79 (328)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSS
T ss_pred CcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCC
Confidence 4799999999874 388999999999999999999999999999999887432 1 69999995 5688
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
|++||||++.+.. .|.. . .|+|+||++++++.++++|+
T Consensus 80 ~~vGdrV~~~~~~-----------------------~g~~-~------------------~G~~aey~~v~~~~~~~~P~ 117 (328)
T 1xa0_A 80 FREGDEVIATGYE-----------------------IGVT-H------------------FGGYSEYARLHGEWLVPLPK 117 (328)
T ss_dssp CCTTCEEEEESTT-----------------------BTTT-B------------------CCSSBSEEEECGGGCEECCT
T ss_pred CCCCCEEEEcccc-----------------------CCCC-C------------------CccceeEEEechHHeEECCC
Confidence 9999999986310 1111 1 24899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhh--hhcCCCCCC-EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc
Q 017460 158 IAPLEKICLLSCGLSAGLGAAW--NVADISKGS-TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~--~~~~~~~~~-~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~ 233 (371)
++++++|+++++++.|||.++. +.+++++|+ +|||+|+ |++|++++|+|+++|+ +|++++++++|++.++++|++
T Consensus 118 ~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~ 196 (328)
T 1xa0_A 118 GLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAK 196 (328)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCS
T ss_pred CCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc
Confidence 9999999999999999998763 456788986 9999997 9999999999999999 899999999999999999999
Q ss_pred eEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEec
Q 017460 234 EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGS 312 (371)
Q Consensus 234 ~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~ 312 (371)
+++|++ +.+ .+.+++++++++|+|||++|+. .++.++++++++ |+++.+|.... ....++... +.+++++.|+
T Consensus 197 ~~i~~~--~~~-~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~-G~~v~~G~~~~-~~~~~~~~~~~~~~~~i~g~ 270 (328)
T 1xa0_A 197 EVLARE--DVM-AERIRPLDKQRWAAAVDPVGGR-TLATVLSRMRYG-GAVAVSGLTGG-AEVPTTVHPFILRGVSLLGI 270 (328)
T ss_dssp EEEECC------------CCSCCEEEEEECSTTT-THHHHHHTEEEE-EEEEECSCCSS-SCCCCCSHHHHHTTCEEEEC
T ss_pred EEEecC--CcH-HHHHHHhcCCcccEEEECCcHH-HHHHHHHhhccC-CEEEEEeecCC-CCCCCchhhhhhcCceEEEE
Confidence 999886 222 3345555545899999999984 789999999997 99999997643 222222222 3468899887
Q ss_pred ccCCCCcC---CCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 313 LFGGWKPK---TDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 313 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
........ +.+..+++++.++ + ++ ++++|+++++++||+.+.+++.. |++|+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~g-l--~~-~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 328 (328)
T 1xa0_A 271 DSVYCPMDLRLRIWERLAGDLKPD-L--ER-IAQEISLAELPQALKRILRGELRGRTVVRLA 328 (328)
T ss_dssp CSSSCCHHHHHHHHHHHHTTTCCC-H--HH-HEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred ecccCCHHHHHHHHHHHHHHHHcC-C--ce-eeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence 43221110 1233344444444 3 33 36999999999999999888766 9999864
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=351.05 Aligned_cols=298 Identities=17% Similarity=0.228 Sum_probs=251.4
Q ss_pred eeEEEEecCCCC--eEEEEeec--CCCCCCcEEEEEeeecCCcchhhhhcCCCCC-------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEV--NPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~--p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-------~~G~V~~~G~~v~~~~~G 81 (371)
...+.+..+|.+ |++.+.|. |++++|||+|||.++|||++|++++.|.++. ++|+|+++|++|++|++|
T Consensus 210 ~~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~~~~~lG~E~aG~V~~vG~~V~~~~vG 289 (795)
T 3slk_A 210 GWRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPGVASLGSEGAGVVVETGPGVTGLAPG 289 (795)
T ss_dssp SCCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCSSCCCSCCCEEEEEEEECSSCCSSCTT
T ss_pred eEEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCCCCccccceeEEEEEEeCCCCCcCCCC
Confidence 345666676654 88887764 6789999999999999999999999997753 799999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
|||++. .. |+|+||++++++.++++|+++++
T Consensus 290 DrV~~~-------------------------------~~------------------G~~ae~~~v~~~~~~~iP~~ls~ 320 (795)
T 3slk_A 290 DRVMGM-------------------------------IP------------------KAFGPLAVADHRMVTRIPAGWSF 320 (795)
T ss_dssp CEEEEC-------------------------------CS------------------SCSSSEEEEETTSEEECCTTCCH
T ss_pred CEEEEE-------------------------------ec------------------CCCcCEEEeehHHEEECCCCCCH
Confidence 999976 33 38999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++++++ |++.++ +|++++++++
T Consensus 321 ~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~- 396 (795)
T 3slk_A 321 ARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLASSR- 396 (795)
T ss_dssp HHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEECSS-
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheeecC-
Confidence 9999999999999999988899999999999985 9999999999999999 899998665 666666 9999999997
Q ss_pred CCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCc
Q 017460 241 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 241 ~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 319 (371)
+.++.+.+++.+++ |+|+|||++++ ..++.++++++++ |+++.+|.........+... .++.++.++.+.....
T Consensus 397 -~~~~~~~i~~~t~g~GvDvVld~~gg-~~~~~~l~~l~~~-Gr~v~iG~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 471 (795)
T 3slk_A 397 -TCDFEQQFLGATGGRGVDVVLNSLAG-EFADASLRMLPRG-GRFLELGKTDVRDPVEVADA--HPGVSYQAFDTVEAGP 471 (795)
T ss_dssp -SSTHHHHHHHHSCSSCCSEEEECCCT-TTTHHHHTSCTTC-EEEEECCSTTCCCHHHHHHH--SSSEEEEECCGGGGHH
T ss_pred -ChhHHHHHHHHcCCCCeEEEEECCCc-HHHHHHHHHhcCC-CEEEEeccccccCccccccc--CCCCEEEEeeccccCH
Confidence 67899999999999 99999999998 4789999999997 99999997654332222211 2466666654421110
Q ss_pred ---CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 320 ---KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 320 ---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
.+.+.++++++.++++++ +++++|+++++++||+.+.+++.. |+||+++
T Consensus 472 ~~~~~~l~~~~~l~~~g~l~p--~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~ 524 (795)
T 3slk_A 472 QRIGEMLHELVELFEGRVLEP--LPVTAWDVRQAPEALRHLSQARHVGKLVLTMP 524 (795)
T ss_dssp HHHHHHHHHHHHHHHTTSCCC--CCEEEEEGGGHHHHHHHHHHTCCCBEEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCcCC--CcceeEcHHHHHHHHHHHhcCCccceEEEecC
Confidence 145778899999999765 467999999999999999999888 9999875
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=312.09 Aligned_cols=283 Identities=18% Similarity=0.225 Sum_probs=233.3
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-----C------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-----Q------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-----~------~~G~V~~~G~~v~~~~~G 81 (371)
|||+++++++.+..+++.|.|+++++||+|||.+++||++|++++.|.++ + ++|+|+ |
T Consensus 1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G 69 (302)
T 1iz0_A 1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G 69 (302)
T ss_dssp CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence 79999999988666779999999999999999999999999999988543 1 699987 9
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
|||++.+ .+ |+|+||++++++.++++|+++++
T Consensus 70 drV~~~~------------------------------~~------------------G~~aey~~v~~~~~~~iP~~~~~ 101 (302)
T 1iz0_A 70 RRYAALV------------------------------PQ------------------GGLAERVAVPKGALLPLPEGLSP 101 (302)
T ss_dssp EEEEEEC------------------------------SS------------------CCSBSEEEEEGGGCEECCTTCCH
T ss_pred cEEEEec------------------------------CC------------------cceeeEEEEcHHHcEeCCCCCCH
Confidence 9999873 22 48999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
++||++++++.|||+++.+.+ +++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|++++++++
T Consensus 102 ~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~- 178 (302)
T 1iz0_A 102 EEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYA- 178 (302)
T ss_dssp HHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGG-
T ss_pred HHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECC-
Confidence 999999999999999987677 999999999997 9999999999999999 999999999999999999999999875
Q ss_pred CC-chHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC-eeecchheeeeccEEEecccCCCC
Q 017460 241 NN-EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP-EVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 241 ~~-~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+ .++.+.+ +++|+||| +|+ ..++.++++++++ |+++.+|...... .++... .+.+++++.++.+..+.
T Consensus 179 -~~~~~~~~~-----~~~d~vid-~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~ 248 (302)
T 1iz0_A 179 -EVPERAKAW-----GGLDLVLE-VRG-KEVEESLGLLAHG-GRLVYIGAAEGEVAPIPPLR-LMRRNLAVLGFWLTPLL 248 (302)
T ss_dssp -GHHHHHHHT-----TSEEEEEE-CSC-TTHHHHHTTEEEE-EEEEEC-------CCCCTTH-HHHTTCEEEECCHHHHT
T ss_pred -cchhHHHHh-----cCceEEEE-CCH-HHHHHHHHhhccC-CEEEEEeCCCCCCCCcCHHH-HHhCCCeEEEEeccchh
Confidence 3 4454443 58999999 988 5789999999997 9999998764421 222221 23568899988653221
Q ss_pred -cCCCHHHHHH---HHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 319 -PKTDLPSLVN---RYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 319 -~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
...++.++++ ++.+++++ ++++++|+++++++||+.+.+++.. |+++++
T Consensus 249 ~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 302 (302)
T 1iz0_A 249 REGALVEEALGFLLPRLGRELR--PVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL 302 (302)
T ss_dssp TCHHHHHHHHHHHGGGBTTTBC--CCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred hhHHHHHHHHhhhHHHHcCCcc--cccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 1245788888 88888875 4578999999999999999887766 999864
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=304.18 Aligned_cols=300 Identities=20% Similarity=0.250 Sum_probs=242.4
Q ss_pred ceeeeEEEEecC--C----CCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCC--CC-----eEEEEEeeCCCCC
Q 017460 10 VITCKAAVAWGA--G----QPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQW--PQ-----CCRIVESVGPGVT 76 (371)
Q Consensus 10 ~~~~~a~~~~~~--~----~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~--~~-----~~G~V~~~G~~v~ 76 (371)
+++|||+++.++ | +.++++++|.|++++|||+|||.+++||+.|... .+.. +. ++|+|++. +++
T Consensus 5 ~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~~~~~p~~~g~e~~G~Vv~~--~v~ 81 (333)
T 1v3u_A 5 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SKRLKEGAVMMGQQVARVVES--KNS 81 (333)
T ss_dssp CCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TTTCCTTSBCCCCEEEEEEEE--SCT
T ss_pred cccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cCcCCCCcccccceEEEEEec--CCC
Confidence 568999999875 3 3399999999999999999999999999988632 2211 11 69999985 578
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+|++||||++. |+|+||++++++.++++|
T Consensus 82 ~~~vGdrV~~~---------------------------------------------------g~~aey~~v~~~~~~~iP 110 (333)
T 1v3u_A 82 AFPAGSIVLAQ---------------------------------------------------SGWTTHFISDGKGLEKLL 110 (333)
T ss_dssp TSCTTCEEEEC---------------------------------------------------CCSBSEEEESSTTEEECC
T ss_pred CCCCCCEEEec---------------------------------------------------CceEEEEEechHHeEEcC
Confidence 99999999864 379999999999999999
Q ss_pred CC----CChhh-hhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 157 SI----APLEK-ICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 157 ~~----~~~~~-aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
++ +++++ +++++++++|||+++.+.+++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.++++
T Consensus 111 ~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~ 189 (333)
T 1v3u_A 111 TEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI 189 (333)
T ss_dssp --CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred cccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc
Confidence 97 88887 47888899999999878889999999999996 9999999999999999 999999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCC----eee-cch-heee
Q 017460 231 GVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKP----EVA-AHY-GLFL 304 (371)
Q Consensus 231 g~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~----~~~-~~~-~~~~ 304 (371)
|++.++|+++ ..++.+.+.+.+++++|++||++|.. .++.++++++++ |+++.+|...... ... .+. ..+.
T Consensus 190 g~~~~~d~~~-~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~ 266 (333)
T 1v3u_A 190 GFDAAFNYKT-VNSLEEALKKASPDGYDCYFDNVGGE-FLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIY 266 (333)
T ss_dssp TCSEEEETTS-CSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEE-EEEEECCCCC-------CCBCCCHHHHHH
T ss_pred CCcEEEecCC-HHHHHHHHHHHhCCCCeEEEECCChH-HHHHHHHHHhcC-CEEEEEeccccccCCCCCCCCcCHHHHhh
Confidence 9998888862 16788888887766899999999974 689999999997 9999998764311 111 111 2234
Q ss_pred eccEEEecccCCCCc---CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 305 SGRTLKGSLFGGWKP---KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 305 ~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
+++++.|+....+.. .+.+.++++++.+|++++... .+|+++++++||+.+.+++.. |++|++
T Consensus 267 ~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 333 (333)
T 1v3u_A 267 KQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH--VTKGFENMPAAFIEMLNGANLGKAVVTA 333 (333)
T ss_dssp TTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEE--EEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred cCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCccc--cccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence 688999886544320 235677899999999887654 457999999999999888766 999864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=298.15 Aligned_cols=303 Identities=17% Similarity=0.198 Sum_probs=240.4
Q ss_pred ceeeeEEEEec-----CCC-CeEEE--EeecCC-CCCCcEEEEEeeecCCcchhhhhcCCC---------CC-----eEE
Q 017460 10 VITCKAAVAWG-----AGQ-PLVVE--EVEVNP-PQPEEIRIKVVCTSLCRSDITAWETQW---------PQ-----CCR 66 (371)
Q Consensus 10 ~~~~~a~~~~~-----~~~-~l~~~--~~~~p~-~~~~evlV~v~~~~i~~~D~~~~~g~~---------~~-----~~G 66 (371)
+.+|||++... ++. .++++ ++|.|. |++|||+|||.++++|+.|. .+.|.+ |. ++|
T Consensus 2 ~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G 80 (345)
T 2j3h_A 2 TATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQG 80 (345)
T ss_dssp EEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEE
T ss_pred CccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeec
Confidence 34566666544 442 38888 888887 89999999999999888774 333321 11 689
Q ss_pred EEEe--eCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeE
Q 017460 67 IVES--VGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEY 144 (371)
Q Consensus 67 ~V~~--~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~ 144 (371)
++++ +|+++++|++||||++. |+|+||
T Consensus 81 ~~~~GvV~~~v~~~~vGdrV~~~---------------------------------------------------g~~aey 109 (345)
T 2j3h_A 81 YGVSRIIESGHPDYKKGDLLWGI---------------------------------------------------VAWEEY 109 (345)
T ss_dssp EEEEEEEEECSTTCCTTCEEEEE---------------------------------------------------EESBSE
T ss_pred ceEEEEEecCCCCCCCCCEEEee---------------------------------------------------cCceeE
Confidence 9998 99999999999999875 379999
Q ss_pred EEeeCCc--eEECCC---CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc
Q 017460 145 TVVHSGC--AVKVSS---IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 145 ~~~~~~~--~~~~P~---~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~ 218 (371)
++++++. ++++|+ +++++ +|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|++++
T Consensus 110 ~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~ 187 (345)
T 2j3h_A 110 SVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSA 187 (345)
T ss_dssp EEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred EEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 9999876 999996 35555 67788899999999878889999999999996 9999999999999999 999999
Q ss_pred CChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC----
Q 017460 219 TNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK---- 293 (371)
Q Consensus 219 ~~~~~~~~~~-~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~---- 293 (371)
+++++++.++ ++|++.++|+++ ..++.+.+++.+++++|++||++|. ..++.++++++++ |+++.+|.....
T Consensus 188 ~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~ 264 (345)
T 2j3h_A 188 GSKEKVDLLKTKFGFDDAFNYKE-ESDLTAALKRCFPNGIDIYFENVGG-KMLDAVLVNMNMH-GRIAVCGMISQYNLEN 264 (345)
T ss_dssp SSHHHHHHHHHTSCCSEEEETTS-CSCSHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCGGGTTCSS
T ss_pred CCHHHHHHHHHHcCCceEEecCC-HHHHHHHHHHHhCCCCcEEEECCCH-HHHHHHHHHHhcC-CEEEEEccccccccCC
Confidence 9999999998 799998998762 2467778887775589999999998 5889999999997 999999865421
Q ss_pred Ceeecch-heeeeccEEEecccCCCCc--CCCHHHHHHHHHcCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeC
Q 017460 294 PEVAAHY-GLFLSGRTLKGSLFGGWKP--KTDLPSLVNRYLKKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHM 369 (371)
Q Consensus 294 ~~~~~~~-~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~ 369 (371)
....++. ..+.+++++.|+....+.. .+.+.++++++.+|++++ ++.++|+|+++++||+.+.+++.. |++|.+
T Consensus 265 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~~--~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 342 (345)
T 2j3h_A 265 QEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITY--VEDVADGLEKAPEALVGLFHGKNVGKQVVVV 342 (345)
T ss_dssp CCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCC--CEEEEESGGGSHHHHHHHHTTCCSSEEEEES
T ss_pred ccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCcC--cccccCCHHHHHHHHHHHHcCCCceEEEEEe
Confidence 0122222 2224688888876543221 123788999999999774 456689999999999999988877 999987
Q ss_pred CC
Q 017460 370 PK 371 (371)
Q Consensus 370 ~~ 371 (371)
++
T Consensus 343 ~~ 344 (345)
T 2j3h_A 343 AR 344 (345)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=295.72 Aligned_cols=281 Identities=17% Similarity=0.195 Sum_probs=228.2
Q ss_pred eEEEEeecCC-C--CCCcEEEEEeeecCCcchhhhhcCCCCC-----------------eEEEEEeeCCCCCCCCCCCEE
Q 017460 25 LVVEEVEVNP-P--QPEEIRIKVVCTSLCRSDITAWETQWPQ-----------------CCRIVESVGPGVTEFNEGEHV 84 (371)
Q Consensus 25 l~~~~~~~p~-~--~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------------~~G~V~~~G~~v~~~~~Gd~V 84 (371)
+.+.+.+... + .++||+|||.|+|+|+.|+++..|.++. ++|+| .+||+|
T Consensus 1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V----------~vGdrV 1613 (2512)
T 2vz8_A 1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD----------ASGRRV 1613 (2512)
T ss_dssp EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE----------TTSCCE
T ss_pred eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE----------ccCCEE
Confidence 6777665433 3 3799999999999999999998886421 57766 379999
Q ss_pred EeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCChhhh
Q 017460 85 LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKI 164 (371)
Q Consensus 85 ~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~~~a 164 (371)
++.. .. |+|+||++++++.++++|+++++++|
T Consensus 1614 ~g~~------------------------------~~------------------G~~Aeyv~vp~~~v~~iPd~ls~~eA 1645 (2512)
T 2vz8_A 1614 MGMV------------------------------PA------------------EGLATSVLLLQHATWEVPSTWTLEEA 1645 (2512)
T ss_dssp EEEC------------------------------SS------------------CCSBSEEECCGGGEEECCTTSCHHHH
T ss_pred EEee------------------------------cC------------------CceeeEEEcccceEEEeCCCCCHHHH
Confidence 8862 22 38999999999999999999999999
Q ss_pred hhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCceEeCCC
Q 017460 165 CLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPN 239 (371)
Q Consensus 165 a~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~ 239 (371)
|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|++.|+ +|++++++++|++.+++ +|++++++++
T Consensus 1646 A~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~ 1724 (2512)
T 2vz8_A 1646 ASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSR 1724 (2512)
T ss_dssp TTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESS
T ss_pred HHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCC
Confidence 9999999999999988899999999999975 9999999999999999 99999999999999986 7889999987
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+.++.+.+++.+++ |+|+|||++++ ..++.++++++++ |+++.+|..............+.+++++.++.+..+.
T Consensus 1725 --~~~~~~~i~~~t~g~GvDvVld~~g~-~~l~~~l~~L~~~-Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 1800 (2512)
T 2vz8_A 1725 --DTSFEQHVLRHTAGKGVDLVLNSLAE-EKLQASVRCLAQH-GRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLF 1800 (2512)
T ss_dssp --SSHHHHHHHHTTTSCCEEEEEECCCH-HHHHHHHTTEEEE-EEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTT
T ss_pred --CHHHHHHHHHhcCCCCceEEEECCCc-hHHHHHHHhcCCC-cEEEEeecccccccCcccccccccCCcEEEeeHHHHh
Confidence 67899999999988 99999999985 6799999999997 9999998542211112223334568899887654322
Q ss_pred c--CCCHHHHHHHHH----cCCCCCCcceeeeecchhHHHHHHHHHcCCee-eEEEeCC
Q 017460 319 P--KTDLPSLVNRYL----KKEFMVDEFITHNLLFEDINQAFNLMKEGKCL-RSVIHMP 370 (371)
Q Consensus 319 ~--~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-kvvi~~~ 370 (371)
. ...+.++++++. ++++ .++++++|+++++.+||+.+.+++.. |+||+++
T Consensus 1801 ~~~~~~~~~~l~~l~~~~~~g~l--~p~i~~~f~l~ei~eA~~~l~~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A 1801 EEGGATWQEVSELLKAGIQEGVV--QPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVR 1857 (2512)
T ss_dssp SSCCHHHHHHHHHHHHHHTTTCS--CCCCEEEEESSTHHHHHHHHHTTCCSSEEEEECS
T ss_pred hhCHHHHHHHHHHHHHHHHcCCc--CCCcceEecHHHHHHHHHhhhccCccceEEEECC
Confidence 1 124555666554 4544 44578999999999999999998887 9999874
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=173.66 Aligned_cols=183 Identities=18% Similarity=0.222 Sum_probs=138.2
Q ss_pred CceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH
Q 017460 150 GCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK 228 (371)
Q Consensus 150 ~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 228 (371)
+.++++|+++++++|+++++++.|||+++.+.+++++|++|||+|+ |++|++++++++..|+ +|+++++++++.+.++
T Consensus 2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS 80 (198)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 4688999999999999999999999999877789999999999995 9999999999999999 9999999999999999
Q ss_pred HcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCC--CCeeecchheeee
Q 017460 229 AFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKL--KPEVAAHYGLFLS 305 (371)
Q Consensus 229 ~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~--~~~~~~~~~~~~~ 305 (371)
++|++.++|.+ +.++.+.+.+.+.+ ++|++||++|. ..++.++++++++ |+++.+|.... ...+++ ..+.+
T Consensus 81 ~~g~~~~~d~~--~~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~--~~~~~ 154 (198)
T 1pqw_A 81 RLGVEYVGDSR--SVDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPG-GRFIELGKKDVYADASLGL--AALAK 154 (198)
T ss_dssp TTCCSEEEETT--CSTHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEE-EEEEECSCGGGTTTCEEEG--GGGTT
T ss_pred HcCCCEEeeCC--cHHHHHHHHHHhCCCCCeEEEECCch-HHHHHHHHHhccC-CEEEEEcCCCCcCcCcCCh--hHhcC
Confidence 99998888876 55778888888776 89999999986 5789999999997 99999987542 123333 22346
Q ss_pred ccEEEeccc------CCCCcCCCHHHHHHHHHcCCCCCCc
Q 017460 306 GRTLKGSLF------GGWKPKTDLPSLVNRYLKKEFMVDE 339 (371)
Q Consensus 306 ~~~i~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (371)
++++.++.+ ......+.+.++++++.+|++++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~ 194 (198)
T 1pqw_A 155 SASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLP 194 (198)
T ss_dssp TCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred CcEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCCC
Confidence 777775432 1000024578889999999987653
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-12 Score=111.90 Aligned_cols=166 Identities=18% Similarity=0.144 Sum_probs=111.1
Q ss_pred CCCCCEEEeee-------cCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC
Q 017460 78 FNEGEHVLTVF-------IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG 150 (371)
Q Consensus 78 ~~~Gd~V~~~~-------~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~ 150 (371)
+++||+|++.+ ...|+.|.+|+.|..+.|..... ..| ... +.
T Consensus 4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~-------~~G------------------~~~------~~ 52 (248)
T 2yvl_A 4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK-------PEG------------------VKI------NG 52 (248)
T ss_dssp CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC-------CTT------------------EEE------TT
T ss_pred CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC-------CCC------------------CEE------EE
Confidence 89999999998 77889999998888888875432 111 222 23
Q ss_pred ceEECCCCCChhhhhhc-----chhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHH
Q 017460 151 CAVKVSSIAPLEKICLL-----SCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225 (371)
Q Consensus 151 ~~~~~P~~~~~~~aa~~-----~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~ 225 (371)
.+++.|+.....+.+.. ..+... .. +....++.++++||.+|+| .|..++.+++. +. +|++++.+++..+
T Consensus 53 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~ 127 (248)
T 2yvl_A 53 FEVYRPTLEEIILLGFERKTQIIYPKDS-FY-IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYK 127 (248)
T ss_dssp EEEECCCHHHHHHHTSCCSSCCCCHHHH-HH-HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHH
T ss_pred EEEeCCCHHHHHHhcCcCCCCcccchhH-HH-HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHH
Confidence 44444443222211111 112222 23 3366788899999999998 59999999988 76 9999999999888
Q ss_pred HHHHc----CC-c--eEeCCCCCCchHHHHHHHHh-CC-CccEEEEcCCCh-HHHHHHHHHhccCCceEEEecC
Q 017460 226 KAKAF----GV-T--EFLNPNDNNEPVQQVIKRIT-DG-GADYSFECIGDT-GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 226 ~~~~l----g~-~--~vi~~~~~~~~~~~~v~~~~-~g-g~dvVid~~g~~-~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+++. +. . .++..+ + .+.. .+ ++|+|+...+.. ..++.+.+.|+++ |+++....
T Consensus 128 ~a~~~~~~~~~~~~~~~~~~d-----~----~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 191 (248)
T 2yvl_A 128 TAQKNLKKFNLGKNVKFFNVD-----F----KDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLP 191 (248)
T ss_dssp HHHHHHHHTTCCTTEEEECSC-----T----TTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEES
T ss_pred HHHHHHHHcCCCCcEEEEEcC-----h----hhcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 87653 43 1 122111 1 1112 23 899999988765 5789999999998 99987754
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-08 Score=89.99 Aligned_cols=97 Identities=23% Similarity=0.263 Sum_probs=76.3
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+++|+|+|+|++|+++++.++.+|+ +|++++++++|++.+++++... +++.+ ..++.+.+. ++|+||+|+
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~DvVI~~~ 238 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSN--SAEIETAVA-----EADLLIGAV 238 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECC--HHHHHHHHH-----TCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCC--HHHHHHHHc-----CCCEEEECC
Confidence 4899999999999999999999999 9999999999999998876543 34332 233333332 699999999
Q ss_pred CChHH------HHHHHHHhccCCceEEEecCCCC
Q 017460 265 GDTGM------ITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 265 g~~~~------l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+.+.. .+..++.++++ |+++.++...+
T Consensus 239 ~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~g 271 (361)
T 1pjc_A 239 LVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQG 271 (361)
T ss_dssp CCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred CcCCCCCCeecCHHHHhhCCCC-CEEEEEecCCC
Confidence 86432 56778899997 99999987543
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.2e-09 Score=99.92 Aligned_cols=176 Identities=15% Similarity=0.174 Sum_probs=121.5
Q ss_pred eEEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceee
Q 017460 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSE 143 (371)
Q Consensus 64 ~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~ 143 (371)
.++.|..+|++++++.+|+.++..... .++.... ..|++++
T Consensus 81 a~~~i~~v~~Glds~~vGe~~Il~qvk-----------------------~~~~~~~----------------~~G~~~~ 121 (404)
T 1gpj_A 81 AVRHLFRVASGLESMMVGEQEILRQVK-----------------------KAYDRAA----------------RLGTLDE 121 (404)
T ss_dssp HHHHHHHHHTTTTSSSTTCHHHHHHHH-----------------------HHHHHHH----------------HHTCCCH
T ss_pred HhhhheeeccCCCCCcCCcchhHHHHH-----------------------HHHHHHH----------------HcCCchH
Confidence 378888999999999999987432100 0000000 0135777
Q ss_pred EEEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhc---CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 144 YTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVA---DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 144 ~~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~---~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
|+......++++|+.++.+.++... ++.+++.++.... .-.+|++|+|+|+|.+|.++++.++..|+++|++++++
T Consensus 122 ~~~~~~~~a~~~~k~v~~~~~~~~~-~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~ 200 (404)
T 1gpj_A 122 ALKIVFRRAINLGKRAREETRISEG-AVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 200 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCS-CCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred HHHHHHHHHhhhhccCcchhhhcCC-CccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 7777777888999988877766543 6778887753211 12579999999999999999999999998899999999
Q ss_pred hhhH-HHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHH--HHHHHH--h--ccCCceEEEecCC
Q 017460 221 PEKC-EKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMI--TTALQS--C--CDGWGLAVTLGVP 290 (371)
Q Consensus 221 ~~~~-~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l--~~~~~~--l--~~~~G~~v~~g~~ 290 (371)
+++. ++++++|++ +++. .++.+.+ .++|+|+++++.+..+ ...+.. + +++ +.++.++..
T Consensus 201 ~~ra~~la~~~g~~-~~~~----~~l~~~l-----~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~-~~~v~vdia 266 (404)
T 1gpj_A 201 YERAVELARDLGGE-AVRF----DELVDHL-----ARSDVVVSATAAPHPVIHVDDVREALRKRDRR-SPILIIDIA 266 (404)
T ss_dssp HHHHHHHHHHHTCE-ECCG----GGHHHHH-----HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSC-CCEEEEECC
T ss_pred HHHHHHHHHHcCCc-eecH----HhHHHHh-----cCCCEEEEccCCCCceecHHHHHHHHHhccCC-CCEEEEEcc
Confidence 9886 677889986 4433 2333332 2699999999865432 144554 3 555 777777654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=87.09 Aligned_cols=145 Identities=15% Similarity=0.203 Sum_probs=95.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCC-----C--------c----hHHH
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDN-----N--------E----PVQQ 247 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~-----~--------~----~~~~ 247 (371)
++++|+|+|+|.+|++++++++.+|+ +|+++++++++++.++++|++.+ ++..+. . . ...+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 249 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 249 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence 68999999999999999999999999 89999999999999988998754 233100 0 0 0122
Q ss_pred HHHHHhCCCccEEEEcC---CChH--H-HHHHHHHhccCCceEEEecCCCC-CCeeecchhe-eeeccEEEecccCCCCc
Q 017460 248 VIKRITDGGADYSFECI---GDTG--M-ITTALQSCCDGWGLAVTLGVPKL-KPEVAAHYGL-FLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 248 ~v~~~~~gg~dvVid~~---g~~~--~-l~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~-~~~~~~i~g~~~~~~~~ 319 (371)
.+.+... ++|+||+++ |... . .+..++.++++ +.++.++...+ ......+... ..+++++.++.. +.
T Consensus 250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~--~p- 324 (384)
T 1l7d_A 250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN--VP- 324 (384)
T ss_dssp HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS--GG-
T ss_pred HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC--Cc-
Confidence 2444433 699999999 5321 2 36788999997 99999985432 1111112112 245788887643 21
Q ss_pred CCCHHHHHHHHHcCCCC
Q 017460 320 KTDLPSLVNRYLKKEFM 336 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ 336 (371)
......+.+++.++.++
T Consensus 325 ~~~~~~a~~l~~~~~~~ 341 (384)
T 1l7d_A 325 SRVAADASPLFAKNLLN 341 (384)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhHHH
Confidence 12345577777766554
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=8e-07 Score=82.70 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=75.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
++++|+|+|+|.+|+++++.++.+|+ +|+++++++++++.+++ +|+....+... ..++.+.+. ++|+|++|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~-~~~l~~~l~-----~aDvVi~~~ 239 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS-AYELEGAVK-----RADLVIGAV 239 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC-HHHHHHHHH-----HCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC-HHHHHHHHc-----CCCEEEECC
Confidence 57899999999999999999999999 99999999999888876 77753222210 223333222 589999999
Q ss_pred CChHH------HHHHHHHhccCCceEEEecCCC
Q 017460 265 GDTGM------ITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 265 g~~~~------l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+.+.. .+..++.++++ |.++.++...
T Consensus 240 ~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~~ 271 (377)
T 2vhw_A 240 LVPGAKAPKLVSNSLVAHMKPG-AVLVDIAIDQ 271 (377)
T ss_dssp CCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGGT
T ss_pred CcCCCCCcceecHHHHhcCCCC-cEEEEEecCC
Confidence 75532 57788999997 9999998543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.6e-07 Score=87.21 Aligned_cols=104 Identities=24% Similarity=0.382 Sum_probs=82.9
Q ss_pred hhHHhHhhhhcC--CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHH
Q 017460 172 SAGLGAAWNVAD--ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVI 249 (371)
Q Consensus 172 ~~a~~~l~~~~~--~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v 249 (371)
.++++++ .+.. ..+|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.+.+.++++|++ +++ +.+.+
T Consensus 258 ~s~~~g~-~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~-------l~e~l 327 (494)
T 3ce6_A 258 HSLIDGI-NRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT-------VEEAI 327 (494)
T ss_dssp HHHHHHH-HHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC-------HHHHG
T ss_pred hhhhHHH-HhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec-------HHHHH
Confidence 3455554 3333 6789999999999999999999999999 999999999999899999986 322 22211
Q ss_pred HHHhCCCccEEEEcCCChHHHH-HHHHHhccCCceEEEecCCC
Q 017460 250 KRITDGGADYSFECIGDTGMIT-TALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 250 ~~~~~gg~dvVid~~g~~~~l~-~~~~~l~~~~G~~v~~g~~~ 291 (371)
.++|+|+++++....+. ..++.++++ |+++.+|...
T Consensus 328 -----~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~~ 364 (494)
T 3ce6_A 328 -----GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHFD 364 (494)
T ss_dssp -----GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSSG
T ss_pred -----hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCCC
Confidence 26899999999766565 788999997 9999998753
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=81.62 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=71.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
++++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.+++ +|.....+..+ ..++.+.+. ++|+||+++
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~~~-----~~DvVi~~~ 237 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT-EANIKKSVQ-----HADLLIGAV 237 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC-HHHHHHHHH-----HCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC-HHHHHHHHh-----CCCEEEECC
Confidence 36899999999999999999999999 99999999999888765 77753333221 223333322 689999999
Q ss_pred CChHH------HHHHHHHhccCCceEEEecCCCC
Q 017460 265 GDTGM------ITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 265 g~~~~------l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+.+.. .+..++.++++ |.++.++...+
T Consensus 238 g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~g 270 (369)
T 2eez_A 238 LVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQG 270 (369)
T ss_dssp C-------CCSCHHHHTTSCTT-CEEEECC----
T ss_pred CCCccccchhHHHHHHHhhcCC-CEEEEEecCCC
Confidence 86531 56788899997 99999987543
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=80.34 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=84.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCC---C--------CchH----HHHH
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPND---N--------NEPV----QQVI 249 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~---~--------~~~~----~~~v 249 (371)
++.+|+|+|+|.+|++++++++.+|+ +|+++++++++++.++++|+..+. +..+ . ..++ .+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 249 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF 249 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence 58899999999999999999999999 999999999999999999986442 2100 0 0111 1123
Q ss_pred HHHhCCCccEEEEcCCCh-----HHH-HHHHHHhccCCceEEEecCCCC-CCeeecchh--eeeeccEEEecc
Q 017460 250 KRITDGGADYSFECIGDT-----GMI-TTALQSCCDGWGLAVTLGVPKL-KPEVAAHYG--LFLSGRTLKGSL 313 (371)
Q Consensus 250 ~~~~~gg~dvVid~~g~~-----~~l-~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~--~~~~~~~i~g~~ 313 (371)
.+... ++|+||++++.+ ..+ +..++.++++ +.++.++...+ ......... ...+++++.+..
T Consensus 250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~ 320 (401)
T 1x13_A 250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYT 320 (401)
T ss_dssp HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCS
T ss_pred HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeC
Confidence 33332 689999995321 222 6788999997 99999986432 111111112 224588888764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=77.02 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=72.2
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH----cCC-c--eEeCCCCCCchHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGV-T--EFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~-~--~vi~~~~~~~~~~~~v~ 250 (371)
.....+.++++||-+|+|. |..++.+++.+| ..+|++++.+++..+.+++ +|. . .++.. ++.+.
T Consensus 105 ~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~-- 176 (277)
T 1o54_A 105 AMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-----DISEG-- 176 (277)
T ss_dssp HHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-----CGGGC--
T ss_pred HHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-----CHHHc--
Confidence 3566789999999999887 888889998864 2499999999998887754 354 1 12221 11111
Q ss_pred HHhCCCccEEEEcCCCh-HHHHHHHHHhccCCceEEEecC
Q 017460 251 RITDGGADYSFECIGDT-GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 251 ~~~~gg~dvVid~~g~~-~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+..+.+|+|+...... ..++.+.+.|+++ |.++....
T Consensus 177 -~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 214 (277)
T 1o54_A 177 -FDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP 214 (277)
T ss_dssp -CSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred -ccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 1223799998776654 5688999999997 99887753
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-06 Score=68.91 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=73.3
Q ss_pred hhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHH-HHHcCCceEeCCCCCCchHHHHH
Q 017460 171 LSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVI 249 (371)
Q Consensus 171 ~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~~vi~~~~~~~~~~~~v 249 (371)
+++++.++ +......+.+|+|+|+|.+|.+.++.++..|+ +|+++++++++.+. +++++.... ... ++.+.+
T Consensus 6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~~~-~~~----~~~~~~ 78 (144)
T 3oj0_A 6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEYV-LIN----DIDSLI 78 (144)
T ss_dssp CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCEEE-ECS----CHHHHH
T ss_pred ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCceE-eec----CHHHHh
Confidence 34555554 33344458999999999999999999888999 69999999988765 567885432 221 333333
Q ss_pred HHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 250 KRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 250 ~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
. ++|+||.+++....+.. ...++++ +.++.++.+
T Consensus 79 ~-----~~Divi~at~~~~~~~~-~~~l~~g-~~vid~~~p 112 (144)
T 3oj0_A 79 K-----NNDVIITATSSKTPIVE-ERSLMPG-KLFIDLGNP 112 (144)
T ss_dssp H-----TCSEEEECSCCSSCSBC-GGGCCTT-CEEEECCSS
T ss_pred c-----CCCEEEEeCCCCCcEee-HHHcCCC-CEEEEccCC
Confidence 2 68999999987532211 2567776 788777654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=72.13 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCC-CCCchH------------HHHHHH
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPN-DNNEPV------------QQVIKR 251 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~-~~~~~~------------~~~v~~ 251 (371)
++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.++++|++.+. +.. .....+ .+.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e 261 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED 261 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence 57899999999999999999999999 999999999999999999986321 100 000001 112222
Q ss_pred HhCCCccEEEEcCCCh-----H-HHHHHHHHhccCCceEEEecCCCC
Q 017460 252 ITDGGADYSFECIGDT-----G-MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 252 ~~~gg~dvVid~~g~~-----~-~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
.. .++|+||.++..+ . .-+..++.++++ +.++.++...+
T Consensus 262 ~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~G 306 (381)
T 3p2y_A 262 AI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGETG 306 (381)
T ss_dssp HH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGT
T ss_pred HH-hcCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCCC
Confidence 22 2799999986322 1 236888999997 99999976544
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=73.84 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=73.1
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC-CC--C---CCchHH------------H
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN-PN--D---NNEPVQ------------Q 247 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~-~~--~---~~~~~~------------~ 247 (371)
++.+|+|+|+|.+|+.++++++.+|+ +|+++++++++++.++++|+..+.. .. + ....+. .
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~ 267 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA 267 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence 57899999999999999999999999 9999999999999999999853211 00 0 000011 1
Q ss_pred HHHHHhCCCccEEEEcCCChH------HHHHHHHHhccCCceEEEecCC
Q 017460 248 VIKRITDGGADYSFECIGDTG------MITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 248 ~v~~~~~gg~dvVid~~g~~~------~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
.+.+... ++|+||.++..+. .-+..++.++++ +.++.++..
T Consensus 268 ~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d 314 (405)
T 4dio_A 268 LVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVE 314 (405)
T ss_dssp HHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGG
T ss_pred HHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCC
Confidence 2222221 7999999863221 236888999997 999999753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.8e-05 Score=58.28 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=65.3
Q ss_pred CCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+.+|+|+|+|.+|...++.+...| . +|+++++++++.+.+...+...+ .|.. + .+.+.+... ++|+||+++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~--~---~~~~~~~~~-~~d~vi~~~ 77 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAK--D---EAGLAKALG-GFDAVISAA 77 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTT--C---HHHHHHHTT-TCSEEEECS
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCC--C---HHHHHHHHc-CCCEEEECC
Confidence 568999999999999999999999 6 89999999999888887776543 3433 2 233444433 799999999
Q ss_pred CChHHHHHHHHHhccCCceEEEe
Q 017460 265 GDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
+........-.+...+ -.++.+
T Consensus 78 ~~~~~~~~~~~~~~~g-~~~~~~ 99 (118)
T 3ic5_A 78 PFFLTPIIAKAAKAAG-AHYFDL 99 (118)
T ss_dssp CGGGHHHHHHHHHHTT-CEEECC
T ss_pred CchhhHHHHHHHHHhC-CCEEEe
Confidence 8654433434444443 444443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-05 Score=63.59 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceEe-CCCCCCchHHHHHHHHhCCCccEEE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
..++++|+|+|+|.+|+..++.++..|+ +|+++++++++.+.++ +.|...+. +.. + .+.+.+..-.++|+||
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~~~d~~--~---~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTVVGDAA--E---FETLKECGMEKADMVF 89 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEEESCTT--S---HHHHHTTTGGGCSEEE
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEEEecCC--C---HHHHHHcCcccCCEEE
Confidence 4567899999999999999999999999 9999999999888777 67765433 221 1 2233332112799999
Q ss_pred EcCCChHHHHHHHHHhcc
Q 017460 262 ECIGDTGMITTALQSCCD 279 (371)
Q Consensus 262 d~~g~~~~l~~~~~~l~~ 279 (371)
.+++.......+...++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~ 107 (155)
T 2g1u_A 90 AFTNDDSTNFFISMNARY 107 (155)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHH
Confidence 999986554455455443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.6e-06 Score=73.57 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=74.1
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc----CCce--EeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVTE--FLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~~--vi~~~~~~~~~~~~v~~~~ 253 (371)
..++++++++||.+|+|+.+..++.+++..|+ +|++++.+++..+.+++. |.+. ++... .. ++.
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gD--a~-------~l~ 185 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGD--ET-------VID 185 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESC--GG-------GGG
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECc--hh-------hCC
Confidence 35788999999999999878888888888898 999999999998888653 5422 22211 11 122
Q ss_pred CCCccEEEEcCCCh---HHHHHHHHHhccCCceEEEecC
Q 017460 254 DGGADYSFECIGDT---GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 254 ~gg~dvVid~~g~~---~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
++.||+|+.....+ ..++.+.+.|+++ |+++....
T Consensus 186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~ 223 (298)
T 3fpf_A 186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTY 223 (298)
T ss_dssp GCCCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred CCCcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcC
Confidence 34899999765433 4688999999998 99987653
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.5e-05 Score=71.62 Aligned_cols=93 Identities=23% Similarity=0.385 Sum_probs=73.7
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
.-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|.. +. ++.+.+ ...|+|+.|
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~-v~-------~Leeal-----~~ADIVi~a 282 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFR-LV-------KLNEVI-----RQVDIVITC 282 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC-------CHHHHT-----TTCSEEEEC
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCE-ec-------cHHHHH-----hcCCEEEEC
Confidence 4579999999999999999999999999 999999999887777777753 22 222222 268999999
Q ss_pred CCChHHHH-HHHHHhccCCceEEEecCCC
Q 017460 264 IGDTGMIT-TALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~~l~-~~~~~l~~~~G~~v~~g~~~ 291 (371)
.+....+. ..+..++++ +.++.+|...
T Consensus 283 tgt~~lI~~e~l~~MK~g-ailINvgrg~ 310 (435)
T 3gvp_A 283 TGNKNVVTREHLDRMKNS-CIVCNMGHSN 310 (435)
T ss_dssp SSCSCSBCHHHHHHSCTT-EEEEECSSTT
T ss_pred CCCcccCCHHHHHhcCCC-cEEEEecCCC
Confidence 88655554 888999997 9998887653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=97.95 E-value=7.8e-06 Score=72.18 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=69.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
.++.+||.+|+|. |..+..+++.. |. +|++++.+++..+.+++.+.. .++... ...+ .+..+.+|+|+.
T Consensus 84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d--~~~~-----~~~~~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVAS--SHRL-----PFSDTSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECC--TTSC-----SBCTTCEEEEEE
T ss_pred CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcc--hhhC-----CCCCCceeEEEE
Confidence 5788999999988 98899999886 66 999999999999999876643 222211 1111 012237999996
Q ss_pred cCCChHHHHHHHHHhccCCceEEEecC
Q 017460 263 CIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 263 ~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
... ...+..+.+.|+++ |+++....
T Consensus 155 ~~~-~~~l~~~~~~L~pg-G~l~~~~~ 179 (269)
T 1p91_A 155 IYA-PCKAEELARVVKPG-GWVITATP 179 (269)
T ss_dssp ESC-CCCHHHHHHHEEEE-EEEEEEEE
T ss_pred eCC-hhhHHHHHHhcCCC-cEEEEEEc
Confidence 443 45789999999997 99887643
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=71.99 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=67.0
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHc----C-------------CceEeCCCCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----G-------------VTEFLNPNDN 241 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~l----g-------------~~~vi~~~~~ 241 (371)
....+.++++||-+|+|. |..++.+++..|. .+|++++.+++..+.+++. | -..++..+
T Consensus 99 ~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d-- 175 (336)
T 2b25_A 99 SMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD-- 175 (336)
T ss_dssp HHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC--
T ss_pred HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC--
Confidence 455788999999999876 7788888888763 4999999999888777542 1 11122111
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCCh-HHHHHHHHHhccCCceEEEecC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDT-GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~-~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
..+. ...+..+.||+|+-....+ ..++.+.+.|+++ |+++.+..
T Consensus 176 ~~~~---~~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 220 (336)
T 2b25_A 176 ISGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV 220 (336)
T ss_dssp TTCC---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred hHHc---ccccCCCCeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence 1111 0112223699988655543 3488899999997 99987643
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=65.94 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=72.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
-.|++|+|+|+|.+|.++++.++..|+ +|++.+++.++.+.++++|+.. ++. .++.+ +. ...|+|+.++
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~----~~l~~----~l-~~aDvVi~~~ 221 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHI----SKAAQ----EL-RDVDVCINTI 221 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEG----GGHHH----HT-TTCSEEEECC
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cCh----hhHHH----Hh-cCCCEEEECC
Confidence 468999999999999999999999999 9999999998887777888753 222 12222 22 2689999999
Q ss_pred CChHHHHHHHHHhccCCceEEEecCC
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+....-+..+..++++ +.++.++..
T Consensus 222 p~~~i~~~~l~~mk~~-~~lin~ar~ 246 (293)
T 3d4o_A 222 PALVVTANVLAEMPSH-TFVIDLASK 246 (293)
T ss_dssp SSCCBCHHHHHHSCTT-CEEEECSST
T ss_pred ChHHhCHHHHHhcCCC-CEEEEecCC
Confidence 7632234567889997 899988753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00022 Score=58.94 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=64.3
Q ss_pred CCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCC-CccEEEEc
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDG-GADYSFEC 263 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~g-g~dvVid~ 263 (371)
+++|+|+|.|.+|...++.++.. |+ +|+++++++++.+.+++.|...+. |.. +. +.+.+.++- ++|+||.+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~--~~---~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDAT--DP---DFWERILDTGHVKLVLLA 112 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTT--CH---HHHHTBCSCCCCCEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCC--CH---HHHHhccCCCCCCEEEEe
Confidence 67899999999999999999998 99 999999999999999888886544 332 22 223333233 89999999
Q ss_pred CCChHHHHHHHHHhcc
Q 017460 264 IGDTGMITTALQSCCD 279 (371)
Q Consensus 264 ~g~~~~l~~~~~~l~~ 279 (371)
+++..........++.
T Consensus 113 ~~~~~~~~~~~~~~~~ 128 (183)
T 3c85_A 113 MPHHQGNQTALEQLQR 128 (183)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH
Confidence 9876544444444443
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=68.27 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=72.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
.-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|.. +. ++.+.++ ..|+|+.+
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~-vv-------~LeElL~-----~ADIVv~a 309 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFE-VV-------TLDDAAS-----TADIVVTT 309 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE-EC-------CHHHHGG-----GCSEEEEC
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCce-ec-------cHHHHHh-----hCCEEEEC
Confidence 4579999999999999999999999999 999999998877666667764 22 1222221 58999999
Q ss_pred CCChHHH-HHHHHHhccCCceEEEecCCC
Q 017460 264 IGDTGMI-TTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~~l-~~~~~~l~~~~G~~v~~g~~~ 291 (371)
.+....+ ...+..++++ +.++.+|-..
T Consensus 310 tgt~~lI~~e~l~~MK~G-AILINvGRgd 337 (464)
T 3n58_A 310 TGNKDVITIDHMRKMKDM-CIVGNIGHFD 337 (464)
T ss_dssp CSSSSSBCHHHHHHSCTT-EEEEECSSST
T ss_pred CCCccccCHHHHhcCCCC-eEEEEcCCCC
Confidence 9865444 5888999997 8888887543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0004 Score=54.63 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=66.8
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.++|+|+|.|.+|...++.++..|. .|+++++++++.+.+++.|...+. |.. +.+ .+.+..-.++|+|+-+++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~--~~~---~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAA--NEE---IMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTT--SHH---HHHHTTGGGCSEEEECCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCC--CHH---HHHhcCcccCCEEEEECC
Confidence 4689999999999999999999999 999999999999999988886554 332 222 233321127999999998
Q ss_pred ChHHHH---HHHHHhccCCceEEEe
Q 017460 266 DTGMIT---TALQSCCDGWGLAVTL 287 (371)
Q Consensus 266 ~~~~l~---~~~~~l~~~~G~~v~~ 287 (371)
...... ..++.+.+. .+++..
T Consensus 81 ~~~~n~~~~~~a~~~~~~-~~iiar 104 (140)
T 3fwz_A 81 NGYEAGEIVASARAKNPD-IEIIAR 104 (140)
T ss_dssp CHHHHHHHHHHHHHHCSS-SEEEEE
T ss_pred ChHHHHHHHHHHHHHCCC-CeEEEE
Confidence 754222 334445554 555443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00016 Score=63.07 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=71.8
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~ 250 (371)
....+++++++||-+|+|. |..++.+++.+| ..+|++++.+++..+.+++ .|.. .++.. ++.+
T Consensus 86 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~--- 156 (255)
T 3mb5_A 86 VAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK-----DIYE--- 156 (255)
T ss_dssp HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS-----CGGG---
T ss_pred HHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC-----chhh---
Confidence 3567789999999999886 888888998853 3499999999998887754 3542 22222 1111
Q ss_pred HHhCCCccEEEEcCCChH-HHHHHHHHhccCCceEEEec
Q 017460 251 RITDGGADYSFECIGDTG-MITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 251 ~~~~gg~dvVid~~g~~~-~l~~~~~~l~~~~G~~v~~g 288 (371)
.+..+.+|+|+....... .++.+.+.|+++ |+++.+.
T Consensus 157 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~ 194 (255)
T 3mb5_A 157 GIEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYT 194 (255)
T ss_dssp CCCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred ccCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence 122237999998776543 689999999997 9998764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00017 Score=64.70 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=71.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
-.+.+|+|+|+|.+|..+++.++..|+ +|++.+++.++.+.+.++|+. +++. .++ .++. .++|+|+.++
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~----~~l----~~~l-~~aDvVi~~~ 223 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT----DEL----KEHV-KDIDICINTI 223 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG----GGH----HHHS-TTCSEEEECC
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch----hhH----HHHh-hCCCEEEECC
Confidence 468999999999999999999999999 999999999888777778864 3222 122 2222 2689999999
Q ss_pred CChHHHHHHHHHhccCCceEEEecCC
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+....-+..+..++++ +.++.++..
T Consensus 224 p~~~i~~~~~~~mk~g-~~lin~a~g 248 (300)
T 2rir_A 224 PSMILNQTVLSSMTPK-TLILDLASR 248 (300)
T ss_dssp SSCCBCHHHHTTSCTT-CEEEECSST
T ss_pred ChhhhCHHHHHhCCCC-CEEEEEeCC
Confidence 8632224567788887 889988754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00022 Score=63.12 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=71.0
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHHc-----C--Cc--eEeCCCCCCchHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF-----G--VT--EFLNPNDNNEPVQQV 248 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~l-----g--~~--~vi~~~~~~~~~~~~ 248 (371)
.....++++++||.+|+| .|..++.+++..| ..+|++++.+++..+.+++. | .. .++..+ +.+.
T Consensus 92 ~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d-----~~~~ 165 (280)
T 1i9g_A 92 VHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD-----LADS 165 (280)
T ss_dssp HHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC-----GGGC
T ss_pred HHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc-----hHhc
Confidence 356678999999999988 6888888998753 23999999999988877543 4 22 222221 1110
Q ss_pred HHHHhCCCccEEEEcCCCh-HHHHHHHHHhccCCceEEEecC
Q 017460 249 IKRITDGGADYSFECIGDT-GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 249 v~~~~~gg~dvVid~~g~~-~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+..+.+|+|+...... ..++.+.+.|+++ |+++.+..
T Consensus 166 --~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 204 (280)
T 1i9g_A 166 --ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA 204 (280)
T ss_dssp --CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred --CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence 01123799998766544 5688999999997 99887653
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00047 Score=60.78 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+.+||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ +++|... ..|..+ ..+..+.+.+... |++|
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~iD 105 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN-LAELDRLYEKVKAEAGRID 105 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCEE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 5889999986 8999999999999999 999999999887765 6676532 235542 2333333333322 3799
Q ss_pred EEEEcCCCh-------------------------HHHHHHHHHhccCCceEEEecCCCC
Q 017460 259 YSFECIGDT-------------------------GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 259 vVid~~g~~-------------------------~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+++++.|.. ...+.++..++++ |++|.+++...
T Consensus 106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~~~ 163 (273)
T 4fgs_A 106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGSTAG 163 (273)
T ss_dssp EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCGGG
T ss_pred EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeehhh
Confidence 999988752 1234455567776 99999876543
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00013 Score=69.12 Aligned_cols=91 Identities=23% Similarity=0.341 Sum_probs=71.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
-.|++++|+|+|.+|.+.++.++..|+ +|+++++++.+...+...|++ +.+.. . . -..+|+++++.
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~le----e-------~-~~~aDvVi~at 328 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTLE----D-------V-VSEADIFVTTT 328 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGG----G-------T-TTTCSEEEECS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCHH----H-------H-HHhcCEEEeCC
Confidence 468999999999999999999999999 999999999888887777763 22211 1 0 12689999999
Q ss_pred CChHHH-HHHHHHhccCCceEEEecCC
Q 017460 265 GDTGMI-TTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 265 g~~~~l-~~~~~~l~~~~G~~v~~g~~ 290 (371)
|....+ ...+..++++ +.++..|..
T Consensus 329 G~~~vl~~e~l~~mk~g-aiVvNaG~~ 354 (488)
T 3ond_A 329 GNKDIIMLDHMKKMKNN-AIVCNIGHF 354 (488)
T ss_dssp SCSCSBCHHHHTTSCTT-EEEEESSST
T ss_pred CChhhhhHHHHHhcCCC-eEEEEcCCC
Confidence 875555 3478889997 888888864
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00096 Score=52.37 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=58.3
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
..+|+|+|+|.+|...++.+...|. +|+++++++++.+.+++.|...+. |.. ++ +.+.+..-.++|+||.+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~--~~---~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPT--DE---SFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTT--CH---HHHHHSCCTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCC--CH---HHHHhCCcccCCEEEEecC
Confidence 4679999999999999999999999 999999999999999888875443 332 22 2333332227999999999
Q ss_pred ChH
Q 017460 266 DTG 268 (371)
Q Consensus 266 ~~~ 268 (371)
+..
T Consensus 80 ~~~ 82 (141)
T 3llv_A 80 DDE 82 (141)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0014 Score=56.76 Aligned_cols=78 Identities=9% Similarity=0.081 Sum_probs=55.4
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce---EeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE---FLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
+++|||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+.+-+... ..|..+ .++..+.+.+... |++|++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~g~iDiL 79 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVAD-PLTLKKFVEYAMEKLQRIDVL 79 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 368999985 8999999999999999 9999999998887775544332 235441 2333333333322 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
+++.|.
T Consensus 80 VNNAG~ 85 (247)
T 3ged_A 80 VNNACR 85 (247)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998874
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00037 Score=64.98 Aligned_cols=91 Identities=24% Similarity=0.385 Sum_probs=70.5
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
.-.|.+|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|... . ++.+.+ ...|+|+.+
T Consensus 208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~-~-------sL~eal-----~~ADVVilt 273 (436)
T 3h9u_A 208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQV-L-------LVEDVV-----EEAHIFVTT 273 (436)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-C-------CHHHHT-----TTCSEEEEC
T ss_pred cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCee-c-------CHHHHH-----hhCCEEEEC
Confidence 3468999999999999999999999999 9999999998887777777642 1 222222 158999998
Q ss_pred CCChHHHH-HHHHHhccCCceEEEecC
Q 017460 264 IGDTGMIT-TALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 264 ~g~~~~l~-~~~~~l~~~~G~~v~~g~ 289 (371)
.+....+. ..+..++++ ..++.++-
T Consensus 274 ~gt~~iI~~e~l~~MK~g-AIVINvgR 299 (436)
T 3h9u_A 274 TGNDDIITSEHFPRMRDD-AIVCNIGH 299 (436)
T ss_dssp SSCSCSBCTTTGGGCCTT-EEEEECSS
T ss_pred CCCcCccCHHHHhhcCCC-cEEEEeCC
Confidence 87654443 667888997 88888873
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00066 Score=53.20 Aligned_cols=75 Identities=20% Similarity=0.384 Sum_probs=55.2
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+++|+|+|+|.+|...++.+...|+ +|+++++++++.+.+++.+...+. +.. + .+.+.+..-+++|+|+.+++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~d~~--~---~~~l~~~~~~~~d~vi~~~~ 79 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANAT--E---ENELLSLGIRNFEYVIVAIG 79 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEEEECCTT--C---HHHHHTTTGGGCSEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEEEEeCCC--C---HHHHHhcCCCCCCEEEECCC
Confidence 5679999999999999999999998 899999998887777666664332 322 2 23333321127999999999
Q ss_pred Ch
Q 017460 266 DT 267 (371)
Q Consensus 266 ~~ 267 (371)
..
T Consensus 80 ~~ 81 (144)
T 2hmt_A 80 AN 81 (144)
T ss_dssp SC
T ss_pred Cc
Confidence 64
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0018 Score=55.48 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=67.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC-ceEe-CCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-TEFL-NPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
.+.+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+.++ ..+. |.. +.+.+..+ ++|+||.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~-~~D~vi~ 90 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANLE-------EDFSHAFA-SIDAVVF 90 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCTT-------SCCGGGGT-TCSEEEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEcccH-------HHHHHHHc-CCCEEEE
Confidence 4789999996 9999999999988999 99999999999888877777 4332 331 22333332 7999999
Q ss_pred cCCChH-------------HHHHHHHHhcc-CCceEEEecCCCC
Q 017460 263 CIGDTG-------------MITTALQSCCD-GWGLAVTLGVPKL 292 (371)
Q Consensus 263 ~~g~~~-------------~l~~~~~~l~~-~~G~~v~~g~~~~ 292 (371)
+.|... .....++.+.. +.++++.+++...
T Consensus 91 ~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~ 134 (236)
T 3e8x_A 91 AAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT 134 (236)
T ss_dssp CCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred CCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 998421 11223333322 2278999887544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0034 Score=54.70 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=56.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceE---eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF---LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v---i~~~~~~~~~~~~v~~~~~--g 255 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.. ++.|.... .|..+ .++..+.+.+... |
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTD-ELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHCC
Confidence 4889999985 8999999999999999 999999998876543 44555432 24441 3334444444433 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++++.|.
T Consensus 86 ~iDiLVNNAG~ 96 (255)
T 4g81_D 86 HVDILINNAGI 96 (255)
T ss_dssp CCCEEEECCCC
T ss_pred CCcEEEECCCC
Confidence 79999999875
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.001 Score=57.42 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=68.2
Q ss_pred CCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 183 DISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 183 ~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
++-.|+++||+|+ +++|.+.+..+...|+ +|+++++++++.+..+.-.+. ...|.. +++-.+++-+.. +++|++
T Consensus 7 dlf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~--~~~~v~~~~~~~-g~iDiL 82 (242)
T 4b79_A 7 DIYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDIT--DSQRLQRLFEAL-PRLDVL 82 (242)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTT--CHHHHHHHHHHC-SCCSEE
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCC--CHHHHHHHHHhc-CCCCEE
Confidence 3457999999985 8999999999999999 999999988766433221111 133554 333233332222 479999
Q ss_pred EEcCCCh-----------------------HHHHHHHHHhccCCceEEEecCCCC
Q 017460 261 FECIGDT-----------------------GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 261 id~~g~~-----------------------~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+++.|-. ...+.++..++..+|++|.+++...
T Consensus 83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~ 137 (242)
T 4b79_A 83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYS 137 (242)
T ss_dssp EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGG
T ss_pred EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 9998742 0123344455432399999987543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0022 Score=53.11 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCC---------CEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHH
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGA---------SRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRI 252 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~---------~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~ 252 (371)
.++++++||.+|+|+ |..++.+++..|. .+|++++.++... . -++ ..+ ..+-......+.+...
T Consensus 19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~--~--~~~-~~~~~~d~~~~~~~~~~~~~ 92 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP--L--EGA-TFLCPADVTDPRTSQRILEV 92 (196)
T ss_dssp CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC--C--TTC-EEECSCCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc--C--CCC-eEEEeccCCCHHHHHHHHHh
Confidence 367899999999988 8899999998873 4999999987431 0 112 223 2211123344455555
Q ss_pred hCC-CccEEEE-----cCCCh------------HHHHHHHHHhccCCceEEEec
Q 017460 253 TDG-GADYSFE-----CIGDT------------GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 253 ~~g-g~dvVid-----~~g~~------------~~l~~~~~~l~~~~G~~v~~g 288 (371)
..+ .||+|+. +++.. ..+..+.+.|+++ |+++...
T Consensus 93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~ 145 (196)
T 2nyu_A 93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKT 145 (196)
T ss_dssp SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence 555 8999994 33321 3567788899997 9988753
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0022 Score=55.94 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=68.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++... ..|..+ .......+..... +++|
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 84 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD-LNEIAVLGAAAGQTLGAID 84 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence 5789999985 8999999999989999 999999998887665 3444322 234441 2233333332222 3799
Q ss_pred EEEEcCCCh----------H---------------HHHHHHHHhccCCceEEEecCCCC
Q 017460 259 YSFECIGDT----------G---------------MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 259 vVid~~g~~----------~---------------~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+++++.|.. + ..+.++..++.+ |+++.+++...
T Consensus 85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~~ 142 (255)
T 4eso_A 85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-GSIVFTSSVAD 142 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCGGG
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CEEEEECChhh
Confidence 999988741 1 123333445565 89999876543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0044 Score=54.18 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=52.3
Q ss_pred CCCEEEEEcc-Ch--HHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCC---c-eEeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GT--VGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGV---T-EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~--~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~---~-~vi~~~~~~~~~~~~v~~~~~ 254 (371)
.+.++||+|+ |. +|.+.+..+...|+ +|+++.++++..+.++ +++. . ...|..+ ...+.+.+.+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN-DAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS-SHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC-HHHHHHHHHHHHH
Confidence 4789999985 55 99998888888899 9999988876554443 3332 1 1235542 3344444444332
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
+++|+++.+.|.
T Consensus 84 ~~g~id~li~~Ag~ 97 (266)
T 3oig_A 84 QVGVIHGIAHCIAF 97 (266)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCeeEEEEcccc
Confidence 379999998873
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0049 Score=53.25 Aligned_cols=77 Identities=21% Similarity=0.189 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CC
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
..++++|||+|+ |++|.+.+..+...|+ +|++++++.++.+.+ +++.... ..|.. +.. .+.++.. ++
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~--~~~---~~~~~~~~~~~ 84 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLA--NKE---ECSNLISKTSN 84 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTT--SHH---HHHHHHHTCSC
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCC--CHH---HHHHHHHhcCC
Confidence 456889999986 9999999998888999 999999999887765 3444322 22433 222 2333222 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 85 id~li~~Ag~ 94 (249)
T 3f9i_A 85 LDILVCNAGI 94 (249)
T ss_dssp CSEEEECCC-
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0042 Score=52.10 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=69.7
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~ 252 (371)
....+.++++||-+|+|. |..++.+++. +. +|++++.+++..+.+++ +|.. .++..+ ..+ . +
T Consensus 49 ~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~~---~---~ 117 (204)
T 3njr_A 49 AALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT--APA---A---L 117 (204)
T ss_dssp HHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC--TTG---G---G
T ss_pred HhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCc--hhh---h---c
Confidence 556788899999999886 8888888887 77 99999999998877744 4543 233221 111 0 1
Q ss_pred hC-CCccEEEEcCCChH-HHHHHHHHhccCCceEEEecC
Q 017460 253 TD-GGADYSFECIGDTG-MITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 253 ~~-gg~dvVid~~g~~~-~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.. ..+|+|+...+... .++.+.+.|+++ |+++....
T Consensus 118 ~~~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 155 (204)
T 3njr_A 118 ADLPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAV 155 (204)
T ss_dssp TTSCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEEC
T ss_pred ccCCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEec
Confidence 12 27999987654332 678889999998 99887643
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0046 Score=54.20 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=55.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++++... . .|..+ ...+.+.+.+... +++|
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 103 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSD-RKSIKQLAEVAEREMEGID 103 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS-HHHHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCC-HHHHHHHHHHHHHHcCCCC
Confidence 4788999985 8999999999999999 999999998877655 5566532 2 24441 2233333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 104 ~lvnnAg~ 111 (266)
T 3grp_A 104 ILVNNAGI 111 (266)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0062 Score=52.25 Aligned_cols=78 Identities=14% Similarity=0.298 Sum_probs=53.4
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCc---eEeCCCCCCchHHHHHHHHhC--CCccE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVT---EFLNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~---~vi~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. +++.. ...|..+ .......+.+... +++|+
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id~ 80 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH-HEDVDVAFAAAVEWGGLPEL 80 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS-HHHHHHHHHHHHHHHCSCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHhcCCCcE
Confidence 578999986 8999999988888999 9999999998876653 33321 1235441 2333333333322 37999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|.+.|.
T Consensus 81 lvnnAg~ 87 (235)
T 3l6e_A 81 VLHCAGT 87 (235)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998874
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0051 Score=54.41 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=65.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-HH----HHHHcCCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CE----KAKAFGVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-~~----~~~~lg~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
+++++||+|+ |++|.+.+..+...|+ +|++++++.++ .+ .+++.|... . .|..+ ...+...+.+...
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4688999986 9999999999988999 89998887653 22 234445432 2 34431 2233333333322
Q ss_pred CCccEEEEcCCCh----------H---------------HHHHHHHHhccCCceEEEecCCC
Q 017460 255 GGADYSFECIGDT----------G---------------MITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 255 gg~dvVid~~g~~----------~---------------~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+++|++|++.|.. + ..+.++..++.. |+++.+++..
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~ 166 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSIT 166 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGG
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEechh
Confidence 3799999998731 1 123444555565 9999997643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0052 Score=51.31 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=70.3
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc--eEeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT--EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~--~vi~~~~~~~~~~~~v~~~~ 253 (371)
....++++++||-+|+|. |..++.+++.....+|++++.+++..+.+++ .|.+ .++..+ .... +.
T Consensus 34 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~------~~ 104 (204)
T 3e05_A 34 SKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF--APEG------LD 104 (204)
T ss_dssp HHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC--TTTT------CT
T ss_pred HHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC--hhhh------hh
Confidence 556788999999999885 8888899988644499999999998887754 3432 222221 1010 11
Q ss_pred C-CCccEEEEcCCC---hHHHHHHHHHhccCCceEEEecC
Q 017460 254 D-GGADYSFECIGD---TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 254 ~-gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
. +.+|+|+..... ...++.+.+.|+++ |+++....
T Consensus 105 ~~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 143 (204)
T 3e05_A 105 DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAV 143 (204)
T ss_dssp TSCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred cCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEec
Confidence 1 379999987642 34678889999998 99987643
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0062 Score=52.87 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=53.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++++... . .|..+ .+.+...+..... +++|
T Consensus 5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id 82 (253)
T 1hxh_A 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS-EADWTLVMAAVQRRLGTLN 82 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTC-HHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4678999986 9999999998888999 999999998876654 4445322 2 24431 2233333333322 3789
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|++.|.
T Consensus 83 ~lv~~Ag~ 90 (253)
T 1hxh_A 83 VLVNNAGI 90 (253)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0046 Score=53.98 Aligned_cols=104 Identities=11% Similarity=0.076 Sum_probs=67.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH---HHcCCce---EeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA---KAFGVTE---FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~---~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+++++++++.+.+ ++.+... ..|..+ ..+..+.+.+... |+
T Consensus 6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~G~ 83 (258)
T 4gkb_A 6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD-DAQCRDAVAQTIATFGR 83 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence 4789999985 8999999888888999 999998887654443 3444322 235542 2333333433332 37
Q ss_pred ccEEEEcCCCh---------H---------------HHHHHHHHhccCCceEEEecCCC
Q 017460 257 ADYSFECIGDT---------G---------------MITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 257 ~dvVid~~g~~---------~---------------~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+|+++++.|.. + ..+.++..++.++|++|.+++..
T Consensus 84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~ 142 (258)
T 4gkb_A 84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKT 142 (258)
T ss_dssp CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTH
T ss_pred CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehh
Confidence 99999998741 1 12334444543239999998753
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0092 Score=46.23 Aligned_cols=76 Identities=22% Similarity=0.394 Sum_probs=54.0
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+.+|+|+|+|.+|...++.+...|. +|+++++++++.+.+++ ++...+. +.. + .+.+.+..-.++|+||-++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~~d~~--~---~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCT--K---IKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTT--S---HHHHHHTTTTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEEcCCC--C---HHHHHHcCcccCCEEEEee
Confidence 4579999999999999999888898 99999999988877754 5764333 222 1 1222222122799999999
Q ss_pred CChH
Q 017460 265 GDTG 268 (371)
Q Consensus 265 g~~~ 268 (371)
+...
T Consensus 78 ~~~~ 81 (140)
T 1lss_A 78 GKEE 81 (140)
T ss_dssp SCHH
T ss_pred CCch
Confidence 8753
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0072 Score=52.63 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-C--hHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCC-c-e--EeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGV-T-E--FLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g--~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~-~-~--vi~~~~~~~~~~~~v~~~~~ 254 (371)
+|+++||+|+ | ++|++.++.+...|+ +|+.+.+++++++.+ ++++. . . ..|..+ .++..+.+.+...
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS-DEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC-HHHHHHHHHHHHH
Confidence 4889999985 4 799999998889999 999999998776655 33442 1 1 235542 2333333333322
Q ss_pred --CCccEEEEcCC
Q 017460 255 --GGADYSFECIG 265 (371)
Q Consensus 255 --gg~dvVid~~g 265 (371)
|++|+++++.|
T Consensus 83 ~~G~iD~lvnnAg 95 (256)
T 4fs3_A 83 DVGNIDGVYHSIA 95 (256)
T ss_dssp HHCCCSEEEECCC
T ss_pred HhCCCCEEEeccc
Confidence 47999999877
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0018 Score=55.81 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=68.8
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh---
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT--- 253 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~--- 253 (371)
....++++||.+|+| .|..++.+++..+ ..+|++++.+++..+.+++ .|...-+... ..+..+.+..+.
T Consensus 56 ~~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~--~~d~~~~~~~~~~~~ 132 (239)
T 2hnk_A 56 TKISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLK--LGSALETLQVLIDSK 132 (239)
T ss_dssp HHHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE--ESCHHHHHHHHHHCS
T ss_pred HHhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEE--ECCHHHHHHHHHhhc
Confidence 345678899999988 4888889998874 2399999999998877754 3543211111 123333333332
Q ss_pred -----------C-CCccEEEEcCCCh---HHHHHHHHHhccCCceEEEe
Q 017460 254 -----------D-GGADYSFECIGDT---GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 -----------~-gg~dvVid~~g~~---~~l~~~~~~l~~~~G~~v~~ 287 (371)
+ +.||+|+...... ..++.+.+.|+++ |.++.-
T Consensus 133 ~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~ 180 (239)
T 2hnk_A 133 SAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIAD 180 (239)
T ss_dssp SCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence 2 5799998876543 3568888999997 998865
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0067 Score=55.24 Aligned_cols=48 Identities=42% Similarity=0.553 Sum_probs=42.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~ 233 (371)
-+|++|.|.|.|.+|+.+++.++..|+ +|++.+.++.+.+..+++|+.
T Consensus 173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~ 220 (355)
T 1c1d_A 173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT 220 (355)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCE
Confidence 478999999999999999999999999 999998887776666778764
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0063 Score=53.69 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=54.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++++.. . ..|..+ .+...+.+.+... +++|
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 105 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD-EQQIIAMVDACVAAFGGVD 105 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC-HHHHHHHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4788999985 8999999998888999 999999998877665 445532 1 235541 2233333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|++.|.
T Consensus 106 ~lvnnAg~ 113 (277)
T 3gvc_A 106 KLVANAGV 113 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0087 Score=52.40 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=54.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+... ..|..+ .+.....+.+... +
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD-RHSVAAFAQAAVDTWG 80 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4678999986 8999999999889999 999999998876554 3335432 235541 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 81 ~iD~lVnnAG~ 91 (264)
T 3tfo_A 81 RIDVLVNNAGV 91 (264)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00093 Score=57.31 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=68.0
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHh
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~ 253 (371)
....++.+||.+|+| .|..++.+++.. +. +|++++.+++..+.+++ .|.. .++.. +..+.+....
T Consensus 50 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~ 122 (233)
T 2gpy_A 50 LKMAAPARILEIGTA-IGYSAIRMAQALPEA-TIVSIERDERRYEEAHKHVKALGLESRIELLFG-----DALQLGEKLE 122 (233)
T ss_dssp HHHHCCSEEEEECCT-TSHHHHHHHHHCTTC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-----CGGGSHHHHT
T ss_pred HhccCCCEEEEecCC-CcHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----CHHHHHHhcc
Confidence 345678899999988 688888999887 45 99999999998887754 3542 22222 1212222222
Q ss_pred -CCCccEEEEcCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 254 -DGGADYSFECIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 -~gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.||+|+..... ...++.+.+.|+++ |.++...
T Consensus 123 ~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~ 160 (233)
T 2gpy_A 123 LYPLFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSDN 160 (233)
T ss_dssp TSCCEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEET
T ss_pred cCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence 3489999876543 34577888899997 9988753
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0048 Score=53.66 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=55.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.|... ..|..+ .++..+.+.+... |
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK-KKDVEEFVRRTFETYS 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4889999985 8999999988889999 999999999876554 4556543 235542 2333333333322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|+++++.|
T Consensus 84 ~iDiLVNNAG 93 (254)
T 4fn4_A 84 RIDVLCNNAG 93 (254)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 7999999887
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.005 Score=54.21 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=54.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++++.++.+.+ ++++.. . ..|..+ .+...+.+.+... +++|
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 104 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD-PDSVRALFTATVEKFGRVD 104 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4688999986 8999999998888999 999999998877655 445432 1 235541 2333333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 105 ~lVnnAg~ 112 (272)
T 4dyv_A 105 VLFNNAGT 112 (272)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998874
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0027 Score=51.58 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=70.0
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc-eE-eCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EF-LNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~v-i~~~~~~~~~~~~v~~~~ 253 (371)
....+.++++||.+|+|. |..+..+++..+..+|++++.+++..+.+++ +|.. .+ +..+ . .+ .+.
T Consensus 19 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d--~---~~---~~~ 89 (178)
T 3hm2_A 19 SALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG--A---PR---AFD 89 (178)
T ss_dssp HHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC--T---TG---GGG
T ss_pred HHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc--h---Hh---hhh
Confidence 455678899999999886 8888999988743399999999998887754 4543 22 2211 1 11 122
Q ss_pred C--CCccEEEEcCCCh--HHHHHHHHHhccCCceEEEecC
Q 017460 254 D--GGADYSFECIGDT--GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 254 ~--gg~dvVid~~g~~--~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
. +.+|+|+...... ..++.+.+.|+++ |+++....
T Consensus 90 ~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 128 (178)
T 3hm2_A 90 DVPDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAV 128 (178)
T ss_dssp GCCSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEEC
T ss_pred ccCCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEee
Confidence 2 4799999765433 3688999999998 99887643
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0095 Score=52.91 Aligned_cols=102 Identities=18% Similarity=0.240 Sum_probs=64.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhH-HH----HHHcCCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC-EK----AKAFGVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~-~~----~~~lg~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
+|+++||+|+ |++|.+.+..+...|+ +|++++++.++. +. +++.|... . .|..+ ...+.+.+.+...
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD-EQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4789999986 9999999999989999 899988876532 22 23445432 2 25541 2233333333322
Q ss_pred CCccEEEEcCCCh-----------H---------------HHHHHHHHhccCCceEEEecCC
Q 017460 255 GGADYSFECIGDT-----------G---------------MITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 255 gg~dvVid~~g~~-----------~---------------~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+++|++|.+.|.. + ..+.++..++.+ |+++.+++.
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~iv~isS~ 184 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG-DVIINTASI 184 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTT-CEEEEECCT
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CEEEEEech
Confidence 3799999987631 0 123344455666 899998764
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0049 Score=53.23 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=54.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceE-eCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF-LNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v-i~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +++|+..+ .|..+ .+.+.+.+.+... +++|++
T Consensus 4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id~l 81 (245)
T 1uls_A 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD-PASVERGFAEALAHLGRLDGV 81 (245)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC-HHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 3678999986 9999999999888999 999999998877655 44564322 35541 2233333333322 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|++.|.
T Consensus 82 vn~Ag~ 87 (245)
T 1uls_A 82 VHYAGI 87 (245)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999873
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.011 Score=49.81 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=62.9
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+. -++..+ .|.. +... +. + +++|+||.+.|.
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~--d~~~-~~---~--~~~d~vi~~ag~ 71 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIF--DLTL-SD---L--SDQNVVVDAYGI 71 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGG--GCCH-HH---H--TTCSEEEECCCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEecccc--Chhh-hh---h--cCCCEEEECCcC
Confidence 6899996 9999999999999998 9999999988876554 344322 2443 2222 11 1 379999999986
Q ss_pred h--------HHHHHHHHHhccC-CceEEEecCC
Q 017460 267 T--------GMITTALQSCCDG-WGLAVTLGVP 290 (371)
Q Consensus 267 ~--------~~l~~~~~~l~~~-~G~~v~~g~~ 290 (371)
. .....+++.++.. .++++.+++.
T Consensus 72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 72 SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA 104 (221)
T ss_dssp STTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred CccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 3 1234555665542 2688888764
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.003 Score=54.86 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=72.1
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHHc-----CCce--EeCCCCCCchHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAF-----GVTE--FLNPNDNNEPVQQVIK 250 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~l-----g~~~--vi~~~~~~~~~~~~v~ 250 (371)
.....++++++||.+|+|. |..++.+++.+| ..+|++++.+++..+.+++. |... ++.. ++.+.
T Consensus 89 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~-----d~~~~-- 160 (258)
T 2pwy_A 89 VTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG-----KLEEA-- 160 (258)
T ss_dssp HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEES-----CGGGC--
T ss_pred HHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEEC-----chhhc--
Confidence 3556788999999999885 888889998864 23999999999988887653 5322 2221 11100
Q ss_pred HHhCCCccEEEEcCCCh-HHHHHHHHHhccCCceEEEecC
Q 017460 251 RITDGGADYSFECIGDT-GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 251 ~~~~gg~dvVid~~g~~-~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+..+.+|+|+...... ..++.+.+.|+++ |+++.+..
T Consensus 161 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 199 (258)
T 2pwy_A 161 ELEEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYLP 199 (258)
T ss_dssp CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred CCCCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence 01223799998766654 5688999999997 99887753
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0016 Score=54.53 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=74.9
Q ss_pred ceeeEEE-eeCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc
Q 017460 140 SFSEYTV-VHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 140 ~~a~~~~-~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~ 218 (371)
.|.+|.. .+....+.++++++......-. .......+ ...++++.+||-+|+|. |..+..+++ .|..+|++++
T Consensus 17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~l--~~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD 90 (205)
T 3grz_A 17 EWEDYQPVFKDQEIIRLDPGLAFGTGNHQT--TQLAMLGI--ERAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD 90 (205)
T ss_dssp TTCCCCCSSTTCEEEEESCC-----CCHHH--HHHHHHHH--HHHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred cccccccCCCCceeEEecCCcccCCCCCcc--HHHHHHHH--HHhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence 3555555 4556667777776554432110 01111111 11256889999999876 677777776 4555999999
Q ss_pred CChhhHHHHHH----cCCc--eEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH---HHHHHHHHhccCCceEEEec
Q 017460 219 TNPEKCEKAKA----FGVT--EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG---MITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 219 ~~~~~~~~~~~----lg~~--~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~---~l~~~~~~l~~~~G~~v~~g 288 (371)
.+++..+.+++ .+.. .++..+ ..+ ...+.+|+|+....... .++.+.+.|+++ |+++...
T Consensus 91 ~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~-------~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~ 159 (205)
T 3grz_A 91 ISDESMTAAEENAALNGIYDIALQKTS--LLA-------DVDGKFDLIVANILAEILLDLIPQLDSHLNED-GQVIFSG 159 (205)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCEEEESS--TTT-------TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEecc--ccc-------cCCCCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence 99998877754 3432 222221 111 12248999987654321 244555678887 8887753
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0056 Score=55.06 Aligned_cols=99 Identities=12% Similarity=0.196 Sum_probs=70.4
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~---~vi~~~~~~~~~~~~v~ 250 (371)
+.+...++++++||.+|+|. |..+..+++..|+ +|++++.+++..+.+++. |.. .++.. ++ .
T Consensus 82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~----~ 150 (318)
T 2fk8_A 82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-----GW----E 150 (318)
T ss_dssp HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-----CG----G
T ss_pred HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-----Ch----H
Confidence 34566788999999999876 8888888888798 999999999988887653 332 12211 11 1
Q ss_pred HHhCCCccEEEEc-----CCC---hHHHHHHHHHhccCCceEEEecC
Q 017460 251 RITDGGADYSFEC-----IGD---TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 251 ~~~~gg~dvVid~-----~g~---~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+ .+.||+|+.. ++. ...++.+.+.|+++ |+++....
T Consensus 151 ~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 195 (318)
T 2fk8_A 151 DF-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSS 195 (318)
T ss_dssp GC-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred HC-CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 11 1479999876 332 23577888999998 99887643
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.014 Score=50.94 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=54.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++.. . ..|..+ .+...+.+.+... +++|
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD 82 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH 82 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHHcCCCc
Confidence 4678999986 8999999999888999 999999998877665 444422 1 235441 2233333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|++.|.
T Consensus 83 ~lvnnAg~ 90 (263)
T 2a4k_A 83 GVAHFAGV 90 (263)
T ss_dssp EEEEGGGG
T ss_pred EEEECCCC
Confidence 99998873
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0089 Score=50.54 Aligned_cols=98 Identities=9% Similarity=0.119 Sum_probs=63.4
Q ss_pred CEEEEEcc-ChHHHHHHHHHH-HcCCCEEEEEcCChh-hHHHHHHcCCc-eEe--CCCCCCchHHHHHHHHhCCCccEEE
Q 017460 188 STVVIFGL-GTVGLSVAQGAK-ARGASRIIGVDTNPE-KCEKAKAFGVT-EFL--NPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~-~~G~~~vi~~~~~~~-~~~~~~~lg~~-~vi--~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
.+|||+|+ |.+|.+.++.+. ..|+ +|++++++++ +.+.+.+.+.. .++ |.. + .+.+.+... ++|+||
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~--d---~~~~~~~~~-~~d~vv 78 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQ--N---PGXLEQAVT-NAEVVF 78 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTT--C---HHHHHHHHT-TCSEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCC--C---HHHHHHHHc-CCCEEE
Confidence 46999986 999999888887 8999 9999999988 76655322321 222 443 2 223444333 799999
Q ss_pred EcCCChHH-HHHHHHHhccC-CceEEEecCCCC
Q 017460 262 ECIGDTGM-ITTALQSCCDG-WGLAVTLGVPKL 292 (371)
Q Consensus 262 d~~g~~~~-l~~~~~~l~~~-~G~~v~~g~~~~ 292 (371)
.+.|.... .+.+++.+... .+++|.+++...
T Consensus 79 ~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~~ 111 (221)
T 3r6d_A 79 VGAMESGSDMASIVKALSRXNIRRVIGVSMAGL 111 (221)
T ss_dssp ESCCCCHHHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred EcCCCCChhHHHHHHHHHhcCCCeEEEEeecee
Confidence 99986211 34444444432 268888876543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0074 Score=52.19 Aligned_cols=79 Identities=25% Similarity=0.347 Sum_probs=55.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce-E--eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE-F--LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++... . .|..+ .+...+.+.+... +++|
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 82 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISD-PGSVKALFAEIQALTGGID 82 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTC-HHHHHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCCCC
Confidence 4789999986 8999999999999999 999999998877655 4555432 2 24431 2233333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|++.|.
T Consensus 83 ~lv~nAg~ 90 (247)
T 3rwb_A 83 ILVNNASI 90 (247)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999883
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0076 Score=53.07 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=52.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCC--c-eE--eCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGV--T-EF--LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~--~-~v--i~~~~~~~~~~~~v~~~~~- 254 (371)
++.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.|. . .+ .|..+ .+.+...+.+...
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRSQ 108 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC-HHHHHHHHHHHHHh
Confidence 4688999986 9999999999988999 999999998776544 33332 1 12 35441 2233333333322
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 109 ~g~iD~vi~~Ag 120 (279)
T 1xg5_A 109 HSGVDICINNAG 120 (279)
T ss_dssp HCCCSEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 37999999987
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.018 Score=50.50 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=64.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC-hhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~-~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++.++ .++.+.+ ++.|... ..|..+ .+.+.+.+.+...
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD-AEAIEQAIRETVEAL 107 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4789999986 8999999998888999 88887554 4444332 3445432 234441 2333333333322
Q ss_pred CCccEEEEcCCCh-------------------------HHHHHHHHHhccCCceEEEecCC
Q 017460 255 GGADYSFECIGDT-------------------------GMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 255 gg~dvVid~~g~~-------------------------~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+++|++|.+.|.. ...+.++..++.+ |++|.+++.
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~ 167 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSN 167 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCG
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeCh
Confidence 3799999998741 1234445556676 999998763
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00085 Score=57.70 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=69.0
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vi~~~~~~~~~~~~v~~~~ 253 (371)
+...++++++||.+|+| .|..++.+++..+. +|++++.+++..+.+++ .|... ++.. +. ...+.
T Consensus 85 ~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~---~~~~~ 154 (235)
T 1jg1_A 85 EIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG-----DG---SKGFP 154 (235)
T ss_dssp HHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CG---GGCCG
T ss_pred HhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC-----Cc---ccCCC
Confidence 45578889999999998 68889999988874 99999999988777754 44422 2211 11 01122
Q ss_pred CC-CccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 254 DG-GADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+ +||+|+.........+.+.+.|+++ |+++..
T Consensus 155 ~~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~ 188 (235)
T 1jg1_A 155 PKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP 188 (235)
T ss_dssp GGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred CCCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEE
Confidence 23 5999998776544567788999997 988764
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0035 Score=55.47 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=52.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-Hc---CC-c-e--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF---GV-T-E--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l---g~-~-~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.|+++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. ++ +. . . ..|..+ .+.+.+.+.+...
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD-PDQVAALFAAVRAEF 109 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4788999986 8999999998888999 9999999988765542 22 21 1 2 235542 2333333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 110 g~iD~lvnnAG~ 121 (281)
T 4dry_A 110 ARLDLLVNNAGS 121 (281)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.006 Score=57.08 Aligned_cols=95 Identities=18% Similarity=0.324 Sum_probs=68.1
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
..++|+|+|.|.+|+..++.++..|. .|++++.++++.+.+++.|...++ |.. +. +.++..--..+|+||-++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~GDat--~~---~~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFYGDAT--RM---DLLESAGAAKAEVLINAI 76 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEESCTT--CH---HHHHHTTTTTCSEEEECC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEEcCCC--CH---HHHHhcCCCccCEEEECC
Confidence 35679999999999999999999999 999999999999999999986554 332 22 233333112799999999
Q ss_pred CChHHH---HHHHHHhccCCceEEEe
Q 017460 265 GDTGMI---TTALQSCCDGWGLAVTL 287 (371)
Q Consensus 265 g~~~~l---~~~~~~l~~~~G~~v~~ 287 (371)
++.... -...+.+.+. .+++.-
T Consensus 77 ~~~~~n~~i~~~ar~~~p~-~~Iiar 101 (413)
T 3l9w_A 77 DDPQTNLQLTEMVKEHFPH-LQIIAR 101 (413)
T ss_dssp SSHHHHHHHHHHHHHHCTT-CEEEEE
T ss_pred CChHHHHHHHHHHHHhCCC-CeEEEE
Confidence 875432 2333445554 455554
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.01 Score=52.04 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC-hhhHHH----HHHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCEK----AKAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~-~~~~~~----~~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ +++|.+.+..+...|+ +|+++.++ .++.+. +++.|... ..|..+ .+...+.+.+...
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ-VPEIVKLFDQAVAHF 94 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4788999986 8999999999989999 88886554 444333 34455432 235441 2333333333322
Q ss_pred CCccEEEEcCCCh-------------------------HHHHHHHHHhccCCceEEEecCCC
Q 017460 255 GGADYSFECIGDT-------------------------GMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 255 gg~dvVid~~g~~-------------------------~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+++|++|++.|.. ...+.++..+.++ |+++.+++..
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~ 155 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT 155 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence 3799999988741 1234555667776 9999998754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0071 Score=54.56 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCC--c-e--EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGV--T-E--FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~--~-~--vi~~~~~~~~~~~~v~~~~~- 254 (371)
.+.+|||+|+ |++|.+.+..+...|+ +|++++++.++.+.+ +..+. . . ..|..+ ...+...+.....
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS-REGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC-HHHHHHHHHHHHHh
Confidence 4789999986 8999999998888999 999999999876654 22332 1 1 235541 2334444443322
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 85 ~g~id~lv~nAg 96 (319)
T 3ioy_A 85 FGPVSILCNNAG 96 (319)
T ss_dssp TCCEEEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 37999999988
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.01 Score=50.13 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=62.8
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|||+|+ |.+|...+..+...|+ +|+++++++++...+...++..+ .|.. +... +.. +++|+||.+.|.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~--d~~~-----~~~-~~~d~vi~~ag~ 72 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPL--VLTE-----ADL-DSVDAVVDALSV 72 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGG--GCCH-----HHH-TTCSEEEECCCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEecccc--cccH-----hhc-ccCCEEEECCcc
Confidence 5899986 9999999999988999 99999999988776644455433 2443 2222 111 379999999986
Q ss_pred h----------HHHHHHHHHhccCCceEEEecC
Q 017460 267 T----------GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 267 ~----------~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
. .....+++.++...++++.+++
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred CCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 2 1234455555543278888854
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.012 Score=52.41 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=66.4
Q ss_pred CCCCEEEEEcc-Ch--HHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceE--eCCCCCCchHHHHHHHHhC-
Q 017460 185 SKGSTVVIFGL-GT--VGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF--LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~--~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v--i~~~~~~~~~~~~v~~~~~- 254 (371)
-.++++||+|+ |. +|.+.+..+...|+ +|+++.++++..+.+ ++.+.... .|..+ .+.....+.+...
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD-AASIDAVFETLEKK 106 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHh
Confidence 35789999985 55 99999998888999 899998886544433 33343222 35541 2233333333322
Q ss_pred -CCccEEEEcCCChH-----------------------------HHHHHHHHhccCCceEEEecCCC
Q 017460 255 -GGADYSFECIGDTG-----------------------------MITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 255 -gg~dvVid~~g~~~-----------------------------~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+++|++|++.|... ..+.++..+.++ |+++.+++..
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~~ 172 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYYG 172 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECGG
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeehh
Confidence 37999999987420 123444556676 9999987643
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0088 Score=51.39 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=52.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc-CCceE-eCCCCCCchHHHHHHHHhC--CCccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF-GVTEF-LNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l-g~~~v-i~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
++.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +++ +...+ .|.. +. +.+.++.. +++|+
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~--~~---~~~~~~~~~~~~id~ 79 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLG--DW---EATERALGSVGPVDL 79 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTT--CH---HHHHHHHTTCCCCCE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCC--CH---HHHHHHHHHcCCCCE
Confidence 4788999986 9999999999988999 999999998877655 333 33222 2443 22 23333333 37999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|++.|.
T Consensus 80 vi~~Ag~ 86 (244)
T 3d3w_A 80 LVNNAAV 86 (244)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999873
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.012 Score=52.64 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=54.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++++.++.+.+ ++.+... ..|..+ .+.+.+.+.+... +
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH-LDEMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhCC
Confidence 5789999986 8999999999989999 999999998876654 2334322 235541 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 108 ~id~lvnnAg~ 118 (301)
T 3tjr_A 108 GVDVVFSNAGI 118 (301)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999883
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.002 Score=55.99 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=67.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhCC-C
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDG-G 256 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~~g-g 256 (371)
...++.+||-+|+|. |..++.+++.++ ..+|++++.+++..+.+++ .|...-+... ..+..+.+..+.+. .
T Consensus 60 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~--~~d~~~~l~~~~~~~~ 136 (248)
T 3tfw_A 60 RLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLR--EGPALQSLESLGECPA 136 (248)
T ss_dssp HHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE--ESCHHHHHHTCCSCCC
T ss_pred hhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--EcCHHHHHHhcCCCCC
Confidence 456789999999875 778888888874 3499999999998877754 3543111111 12344444444333 8
Q ss_pred ccEEEEcCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 257 ADYSFECIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 257 ~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
||+|+-.... ...++.+.+.|+++ |.++.-.
T Consensus 137 fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~ 170 (248)
T 3tfw_A 137 FDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDN 170 (248)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEEC
T ss_pred eEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeC
Confidence 9999843322 23578888999998 9887654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.014 Score=49.84 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=52.4
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC-Cce-EeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG-VTE-FLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg-~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
+.++||+|+ |++|...+..+...|+ +|+++++++++.+.+ ++++ +.. ..|..+ .+.+.+.+..... +++|++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l 82 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVRE-EGDWARAVAAMEEAFGELSAL 82 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 568999985 9999999999988999 999999998877655 3343 221 234441 2233333333322 379999
Q ss_pred EEcCC
Q 017460 261 FECIG 265 (371)
Q Consensus 261 id~~g 265 (371)
|.+.|
T Consensus 83 i~~Ag 87 (234)
T 2ehd_A 83 VNNAG 87 (234)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99987
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0014 Score=58.70 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=71.4
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~ 250 (371)
+.+...++++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++ .|.. .++.. ++ .
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~----~ 132 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-----GW----E 132 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC-----CG----G
T ss_pred HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-----CH----H
Confidence 34666789999999999885 8888899998887 99999999998877754 3432 12221 11 1
Q ss_pred HHhCCCccEEEEcCCC---------------hHHHHHHHHHhccCCceEEEecCC
Q 017460 251 RITDGGADYSFECIGD---------------TGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 251 ~~~~gg~dvVid~~g~---------------~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
.+ .+.+|+|+....- ...++.+.+.|+++ |+++.....
T Consensus 133 ~~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~ 185 (302)
T 3hem_A 133 EF-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT 185 (302)
T ss_dssp GC-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred Hc-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence 12 4589999874321 24578888899998 999876543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0068 Score=53.64 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=52.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC-----Cc-eEeCCCCCCchHHHHHHHHhCCCc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG-----VT-EFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg-----~~-~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
-.+.++||+|+|++|.+++..+...|+++|+++.|+.+|.+.+ ++++ .. ...+. +++.+.+. .+
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~----~~l~~~l~-----~~ 195 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA----RGIEDVIA-----AA 195 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS----TTHHHHHH-----HS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH----HHHHHHHh-----cC
Confidence 4578999999999999999988889997899999999887654 3332 11 12222 23433333 48
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+||++++.
T Consensus 196 DiVInaTp~ 204 (283)
T 3jyo_A 196 DGVVNATPM 204 (283)
T ss_dssp SEEEECSST
T ss_pred CEEEECCCC
Confidence 999999864
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0032 Score=53.10 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=69.4
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcC--CCEEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARG--ASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G--~~~vi~~~~~~~~~~~~~~----lg~~~--vi~~~~~~~~~~~~v~~ 251 (371)
+...+.++++||.+|+| .|..+..+++..| . +|++++.+++..+.+++ .|... ++.. +.. ..
T Consensus 71 ~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~---~~ 140 (215)
T 2yxe_A 71 ELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDG-LVVSIERIPELAEKAERTLRKLGYDNVIVIVG-----DGT---LG 140 (215)
T ss_dssp HHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEES-----CGG---GC
T ss_pred HhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC-----Ccc---cC
Confidence 55678889999999998 4888889998886 5 99999999988877754 34321 2211 110 01
Q ss_pred Hh-CCCccEEEEcCCChHHHHHHHHHhccCCceEEEec
Q 017460 252 IT-DGGADYSFECIGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 252 ~~-~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+. .+.||+|+.........+.+.+.|+++ |+++..-
T Consensus 141 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~ 177 (215)
T 2yxe_A 141 YEPLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPV 177 (215)
T ss_dssp CGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred CCCCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEE
Confidence 11 237999998776544557888999997 9987653
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0091 Score=53.50 Aligned_cols=88 Identities=24% Similarity=0.327 Sum_probs=66.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++.++ +.+.++|+.. . ++.+.+. ..|+|+-++.
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~-~-------~l~ell~-----~aDvV~l~~p 205 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKF-V-------DLETLLK-----ESDVVTIHVP 205 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEE-C-------CHHHHHH-----HCSEEEECCC
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCccc-c-------CHHHHHh-----hCCEEEEecC
Confidence 47899999999999999999999999 99999998877 5667788742 1 2222222 4799999887
Q ss_pred ChH----HH-HHHHHHhccCCceEEEecC
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g~ 289 (371)
... .+ ...+..++++ ..++.++.
T Consensus 206 ~~~~t~~li~~~~l~~mk~g-a~lin~ar 233 (307)
T 1wwk_A 206 LVESTYHLINEERLKLMKKT-AILINTSR 233 (307)
T ss_dssp CSTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred CChHHhhhcCHHHHhcCCCC-eEEEECCC
Confidence 432 12 4567889987 88888865
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0053 Score=58.43 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=69.4
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
-.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +. ++.+ +. ...|+|+-++
T Consensus 275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~-~~-------~l~e----ll-~~aDiVi~~~ 340 (494)
T 3d64_A 275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYR-VV-------TMEY----AA-DKADIFVTAT 340 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCE-EC-------CHHH----HT-TTCSEEEECS
T ss_pred cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCE-eC-------CHHH----HH-hcCCEEEECC
Confidence 468999999999999999999999999 999999998875445555653 21 1222 22 2589999998
Q ss_pred CChHHH-HHHHHHhccCCceEEEecCCC
Q 017460 265 GDTGMI-TTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 265 g~~~~l-~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+....+ ...+..++++ ..++.++...
T Consensus 341 ~t~~lI~~~~l~~MK~g-AilINvgrg~ 367 (494)
T 3d64_A 341 GNYHVINHDHMKAMRHN-AIVCNIGHFD 367 (494)
T ss_dssp SSSCSBCHHHHHHCCTT-EEEEECSSSS
T ss_pred CcccccCHHHHhhCCCC-cEEEEcCCCc
Confidence 654444 4677889997 8888887643
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0063 Score=54.65 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=63.2
Q ss_pred CEEEEEccChHHHHHHHHH-H-HcCCCEEEEEcCChhh--HHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEE
Q 017460 188 STVVIFGLGTVGLSVAQGA-K-ARGASRIIGVDTNPEK--CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 262 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la-~-~~G~~~vi~~~~~~~~--~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid 262 (371)
-+|.|+|+|.+|...+..+ + .-+.+.+.++++++++ ++.++++|..... .++ +.+.+.+++ ++|+||+
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~------~~~-e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------AGV-EGLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------SHH-HHHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc------CCH-HHHHhccCCCCCcEEEE
Confidence 4789999999999888877 4 3466445556677665 5667788864211 122 334333334 7999999
Q ss_pred cCCChHHHHHHHHHhcc--CCceEEEe
Q 017460 263 CIGDTGMITTALQSCCD--GWGLAVTL 287 (371)
Q Consensus 263 ~~g~~~~l~~~~~~l~~--~~G~~v~~ 287 (371)
+++...+.+.+..+++. + ..++..
T Consensus 78 atp~~~h~~~a~~al~a~~G-k~Vi~e 103 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQAKPG-IRLIDL 103 (312)
T ss_dssp CSCHHHHHHHHHHHHHHCTT-CEEEEC
T ss_pred CCChHHHHHHHHHHHHhCCC-CEEEEc
Confidence 99976677788888887 7 776663
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.016 Score=50.98 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC-CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD-GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-gg 256 (371)
.|+++||+|+ +++|.+.+..+...|+ +|+++++++++.+.+ ++.+... ..|..+ .....+.+..... ++
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE-AGAGTDLIERAEAIAP 109 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS-TTHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC-HHHHHHHHHHHHHhCC
Confidence 4788999985 8999999999988999 999999988765443 3334322 224442 2333333333221 58
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 110 iD~lvnnAg~ 119 (275)
T 4imr_A 110 VDILVINASA 119 (275)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999883
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.012 Score=52.33 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=52.9
Q ss_pred CCCEEEEEcc-C--hHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g--~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ | ++|.+.++.+...|+ +|++++++++..+.+ ++.+.... .|..+ ...+.+.+.+...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 106 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD-AESVDNMFKVLAEEW 106 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4789999986 5 899999888888999 999999987654443 33443333 35541 2333333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 107 g~iD~lVnnAG~ 118 (296)
T 3k31_A 107 GSLDFVVHAVAF 118 (296)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.019 Score=50.63 Aligned_cols=102 Identities=23% Similarity=0.220 Sum_probs=64.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC------------hhhHHHH----HHcCCce---EeCCCCCCchH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEKA----KAFGVTE---FLNPNDNNEPV 245 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~------------~~~~~~~----~~lg~~~---vi~~~~~~~~~ 245 (371)
.|+++||+|+ +++|.+.+..+...|+ +|++++++ .++.+.+ +..+... ..|..+ ....
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD-RAAV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC-HHHH
Confidence 4789999986 8999999999989999 99999876 4443332 3344322 235541 2333
Q ss_pred HHHHHHHhC--CCccEEEEcCCCh--------H---------------HHHHHHHHhccCCceEEEecCC
Q 017460 246 QQVIKRITD--GGADYSFECIGDT--------G---------------MITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 246 ~~~v~~~~~--gg~dvVid~~g~~--------~---------------~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
.+.+.+... +++|++|++.|.. + ..+.++..+..+ |+++.+++.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 155 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSG-ASIITTGSV 155 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCH
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcC-cEEEEeccc
Confidence 333333322 3799999988741 1 123333445565 899988763
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0017 Score=54.52 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=67.0
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc--eEeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT--EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~--~vi~~~~~~~~~~~~v~~~~ 253 (371)
+...++++++||-+|+|. |..+..+++. +. +|++++.+++..+.+++ +|.. .++..+ ..+.. ..
T Consensus 71 ~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~~~--~~ 140 (210)
T 3lbf_A 71 ELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD-----GWQGW--QA 140 (210)
T ss_dssp HHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC-----GGGCC--GG
T ss_pred HhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECC-----cccCC--cc
Confidence 556788999999999884 7788888887 66 99999999998877754 3433 222111 10100 01
Q ss_pred CCCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.||+|+.........+.+.+.|+++ |+++..
T Consensus 141 ~~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~ 173 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIPTALMTQLDEG-GILVLP 173 (210)
T ss_dssp GCCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEE
T ss_pred CCCccEEEEccchhhhhHHHHHhcccC-cEEEEE
Confidence 238999998765544455778899997 988765
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0056 Score=54.64 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=53.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc--eEeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT--EFLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~--~vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
++.+++|+|+|++|.+++..+...|+.+|+++.++.+|.+.+ ++++.. .+++ + +.+.+.. .++|+||+
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~-------~-~~~~~~~-~~aDivIn 210 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS-------L-AEAETRL-AEYDIIIN 210 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC-------H-HHHHHTG-GGCSEEEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee-------H-HHHHhhh-ccCCEEEE
Confidence 578999999999999999999999987999999999886554 566642 1221 2 1222222 26999999
Q ss_pred cCCCh
Q 017460 263 CIGDT 267 (371)
Q Consensus 263 ~~g~~ 267 (371)
+++..
T Consensus 211 ~t~~~ 215 (297)
T 2egg_A 211 TTSVG 215 (297)
T ss_dssp CSCTT
T ss_pred CCCCC
Confidence 99864
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.017 Score=50.33 Aligned_cols=79 Identities=28% Similarity=0.438 Sum_probs=53.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.|... ..|..+ .+.+...+.+... +
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 83 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDFG 83 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence 4688999986 8999999999999999 999999998776544 2234322 235441 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|++.|.
T Consensus 84 ~id~lv~nAg~ 94 (262)
T 1zem_A 84 KIDFLFNNAGY 94 (262)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.016 Score=50.54 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=52.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc-----CCc-e--EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF-----GVT-E--FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l-----g~~-~--vi~~~~~~~~~~~~v~~~~~- 254 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +++ +.. . ..|..+ .+.+.+.+.....
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC-HHHHHHHHHHHHHH
Confidence 4788999986 9999999999988999 999999988775543 222 111 1 235441 2233333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 84 ~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 84 FGRLDILVNNAGV 96 (267)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 379999999874
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.029 Score=49.59 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=62.4
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+... .+..+.+. ..|+||-|+..+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDvvi~~vp~~ 68 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA-------ATPCEVVE-----SCPVTFAMLADP 68 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec-------CCHHHHHh-----cCCEEEEEcCCH
Confidence 478999999999999888888898 99999999999998888776421 12333332 368999999865
Q ss_pred HHHHHHH-------HHhccCCceEEEec
Q 017460 268 GMITTAL-------QSCCDGWGLAVTLG 288 (371)
Q Consensus 268 ~~l~~~~-------~~l~~~~G~~v~~g 288 (371)
..++..+ ..++++ ..++.++
T Consensus 69 ~~~~~v~~~~~~l~~~l~~~-~~vi~~s 95 (287)
T 3pef_A 69 AAAEEVCFGKHGVLEGIGEG-RGYVDMS 95 (287)
T ss_dssp HHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred HHHHHHHcCcchHhhcCCCC-CEEEeCC
Confidence 4455444 445554 4555553
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.02 Score=50.18 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=52.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC---ceE--eCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV---TEF--LNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~---~~v--i~~~~~~~~~~~~v~~~~~--gg 256 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++++. ..+ .|..+ ...+...+.+... ++
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 92 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHGK 92 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 4688999986 9999999998888999 999999988765544 34432 122 24441 2233333333221 37
Q ss_pred ccEEEEcCC
Q 017460 257 ADYSFECIG 265 (371)
Q Consensus 257 ~dvVid~~g 265 (371)
+|++|.+.|
T Consensus 93 id~li~~Ag 101 (278)
T 2bgk_A 93 LDIMFGNVG 101 (278)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCc
Confidence 999999887
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0079 Score=52.34 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=55.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++... ..|..+ ...+.+.+.+... +++|
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 85 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK-EADVDAAVEAALSKFGKVD 85 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHhcCCCC
Confidence 4688999986 8999999999989999 999999999887765 4455432 234441 2333333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 86 ~li~~Ag~ 93 (261)
T 3n74_A 86 ILVNNAGI 93 (261)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998873
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.008 Score=52.34 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=55.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.++++||+|+ |++|.+.++.+...|+ +|++++++.++.+.+ ++++... ..|..+ .+...+.+.+... +++|
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id 84 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR-QDSIDAAIAATVEHAGGLD 84 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHSSSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4789999986 9999999998888999 999999998876655 4455422 235541 2233333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 85 ~lv~~Ag~ 92 (259)
T 4e6p_A 85 ILVNNAAL 92 (259)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999884
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0091 Score=51.98 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=53.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc-----CCc-eE--eCCCCCCchHHHHHHHHhCC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF-----GVT-EF--LNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l-----g~~-~v--i~~~~~~~~~~~~v~~~~~g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ +++ +.. .. .|..+ .+.+.+.+.+....
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 83 (260)
T 2z1n_A 6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE-PGDIDRLFEKARDL 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-HHHHHHHHHHHHHh
Confidence 4678999986 9999999998888999 999999998776544 222 311 22 35541 23344444444333
Q ss_pred -CccEEEEcCC
Q 017460 256 -GADYSFECIG 265 (371)
Q Consensus 256 -g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 84 ~gid~lv~~Ag 94 (260)
T 2z1n_A 84 GGADILVYSTG 94 (260)
T ss_dssp TCCSEEEECCC
T ss_pred cCCCEEEECCC
Confidence 5999999987
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=52.71 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=52.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCC---c-eE--eCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGV---T-EF--LNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~---~-~v--i~~~~~~~~~~~~v~~~~~ 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+. . .. .|..+ ...+.+.+.+...
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA 102 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC-HHHHHHHHHHHHH
Confidence 4678999986 9999999998888999 999999998776544 22332 2 12 35441 2233333333222
Q ss_pred --CCccEEEEcCC
Q 017460 255 --GGADYSFECIG 265 (371)
Q Consensus 255 --gg~dvVid~~g 265 (371)
+++|++|++.|
T Consensus 103 ~~g~iD~lvnnAG 115 (297)
T 1xhl_A 103 KFGKIDILVNNAG 115 (297)
T ss_dssp HHSCCCEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 37999999887
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.015 Score=50.10 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=52.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcC---CceE--eCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFG---VTEF--LNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg---~~~v--i~~~~~~~~~~~~v~~~~~--gg 256 (371)
++.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ +++. -..+ .|..+ .+.+...+..... ++
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 82 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSS
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 4678999986 9999999998888999 999999998776554 3332 1122 34441 2233333333222 36
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 83 id~li~~Ag~ 92 (251)
T 1zk4_A 83 VSTLVNNAGI 92 (251)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999998873
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0042 Score=52.91 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=68.4
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHh
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~ 253 (371)
....++.+||-+|+| .|..++.+++.++ ..+|++++.+++..+.+++ .|.. .++. .+..+.+..+.
T Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~-----~d~~~~~~~~~ 138 (229)
T 2avd_A 65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL-----KPALETLDELL 138 (229)
T ss_dssp HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE-----SCHHHHHHHHH
T ss_pred HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE-----cCHHHHHHHHH
Confidence 445678899999987 6888889998763 3399999999998877754 3442 2222 23334444433
Q ss_pred C----CCccEEEEcCCCh---HHHHHHHHHhccCCceEEEec
Q 017460 254 D----GGADYSFECIGDT---GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~----gg~dvVid~~g~~---~~l~~~~~~l~~~~G~~v~~g 288 (371)
. +.||+|+-..... ..++.+.+.|+++ |.++...
T Consensus 139 ~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~ 179 (229)
T 2avd_A 139 AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLR 179 (229)
T ss_dssp HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred hcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEC
Confidence 2 4799987644332 3578888999997 9888754
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.018 Score=50.12 Aligned_cols=78 Identities=26% Similarity=0.397 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-HHHH-HHc----CCce-E--eCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-CEKA-KAF----GVTE-F--LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-~~~~-~~l----g~~~-v--i~~~~~~~~~~~~v~~~~~- 254 (371)
++.++||+|+ |++|.+.+..+...|+ +|+++++++++ .+.+ +++ +... . .|..+ .+.+.+.+.+...
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC-HHHHHHHHHHHHHh
Confidence 4678999986 8999999999988999 99999998776 4443 222 4322 2 24431 2233333333222
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
+++|++|++.|
T Consensus 81 ~g~iD~lv~~Ag 92 (260)
T 1x1t_A 81 MGRIDILVNNAG 92 (260)
T ss_dssp HSCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 37999999887
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0072 Score=52.50 Aligned_cols=79 Identities=28% Similarity=0.333 Sum_probs=54.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++... ..|..+ .+.+.+.+.+... +++|
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD 81 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGSVD 81 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4678999986 9999999999988999 999999998876654 4454321 235441 2333334433322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|++.|.
T Consensus 82 ~lv~nAg~ 89 (254)
T 1hdc_A 82 GLVNNAGI 89 (254)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998873
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.016 Score=50.73 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=63.9
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC-
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~- 254 (371)
..++++||+|+ +++|.+.+..+...|+ +|+++ .+++++.+.+ ++.+... ..|..+ .+...+.+.+...
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD-PAAVRRLFATAEEA 102 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 35789999986 8999999888888899 88776 4555544433 3444432 235541 2233333333322
Q ss_pred -CCccEEEEcCCCh-------------------------HHHHHHHHHhccCCceEEEecCC
Q 017460 255 -GGADYSFECIGDT-------------------------GMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 255 -gg~dvVid~~g~~-------------------------~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+++|++|++.|.. ..++.++..++.+ |+++.+++.
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS~ 163 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMSTS 163 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCT
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeCh
Confidence 3799999998741 0133455556676 999998764
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.016 Score=49.23 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=66.7
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHh
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~-~vi~~~~~~~~~~~~v~~~~ 253 (371)
..+.+++.+||-+|+|. |..++.+++.+ +. +|++++.+++..+.+++ .|.. .-+... ..+..+.+..+.
T Consensus 51 ~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~--~gda~~~l~~~~ 126 (221)
T 3dr5_A 51 TTNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRVRFL--LSRPLDVMSRLA 126 (221)
T ss_dssp HSCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE--CSCHHHHGGGSC
T ss_pred hhCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE--EcCHHHHHHHhc
Confidence 33444566999999874 88888899876 55 99999999998777743 4543 111111 123333333332
Q ss_pred CCCccEEEEcCCCh---HHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADYSFECIGDT---GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dvVid~~g~~---~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.||+||-..... ..++.+.+.|+++ |.++.-.
T Consensus 127 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~dn 163 (221)
T 3dr5_A 127 NDSYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLAD 163 (221)
T ss_dssp TTCEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEETT
T ss_pred CCCcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEeC
Confidence 45899997544322 2578888999997 8887643
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.023 Score=49.34 Aligned_cols=79 Identities=11% Similarity=0.273 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-Hc---C-------C-ceE--eCCCCCCchHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF---G-------V-TEF--LNPNDNNEPVQQVIK 250 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l---g-------~-~~v--i~~~~~~~~~~~~v~ 250 (371)
.+.++||+|+ |++|...+..+...|+ +|+++++++++.+.+. ++ | . ..+ .|..+ .+.+.+.+.
T Consensus 6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~ 83 (264)
T 2pd6_A 6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSE-ARAARCLLE 83 (264)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTC------------CCEEEECCTTS-HHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCC-HHHHHHHHH
Confidence 4678999986 9999999998888999 9999999988766542 22 2 1 112 24431 223333333
Q ss_pred HHhC--CCc-cEEEEcCCC
Q 017460 251 RITD--GGA-DYSFECIGD 266 (371)
Q Consensus 251 ~~~~--gg~-dvVid~~g~ 266 (371)
.... +++ |++|.+.|.
T Consensus 84 ~~~~~~g~i~d~vi~~Ag~ 102 (264)
T 2pd6_A 84 QVQACFSRPPSVVVSCAGI 102 (264)
T ss_dssp HHHHHHSSCCSEEEECCCC
T ss_pred HHHHHhCCCCeEEEECCCc
Confidence 3321 356 999999873
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.012 Score=52.97 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=66.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
-.|.+|.|+|.|.+|...++.++..|+ +|++.++++++. .+.++|+.. . ++.+.+. ..|+|+-++
T Consensus 140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~-~-------~l~ell~-----~aDvVvl~~ 204 (313)
T 2ekl_A 140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKA-V-------SLEELLK-----NSDVISLHV 204 (313)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEE-C-------CHHHHHH-----HCSEEEECC
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCcee-c-------CHHHHHh-----hCCEEEEec
Confidence 357899999999999999999999999 999999988765 466788652 1 2222222 479999988
Q ss_pred CChH----HH-HHHHHHhccCCceEEEecC
Q 017460 265 GDTG----MI-TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 265 g~~~----~l-~~~~~~l~~~~G~~v~~g~ 289 (371)
.... .+ ...+..++++ +.++.++.
T Consensus 205 P~~~~t~~li~~~~l~~mk~g-a~lIn~ar 233 (313)
T 2ekl_A 205 TVSKDAKPIIDYPQFELMKDN-VIIVNTSR 233 (313)
T ss_dssp CCCTTSCCSBCHHHHHHSCTT-EEEEESSC
T ss_pred cCChHHHHhhCHHHHhcCCCC-CEEEECCC
Confidence 7432 12 4567888986 88888765
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.011 Score=51.66 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=51.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHH-cCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKA-RGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~-~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |.+|...+..+.. .|+ +|++++++.++.+.+ ++.+.. . ..|..+ ...+...+.+...
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHhc
Confidence 4678999986 9999998888877 899 999999988765443 223432 2 235441 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 81 g~id~li~~Ag~ 92 (276)
T 1wma_A 81 GGLDVLVNNAGI 92 (276)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 379999998873
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0087 Score=52.77 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=55.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++++... ..|..+ .....+.+.+... +++|
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 103 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS-AKDAESMVEKTTAKWGRVD 103 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4788999986 8999999999989999 999999998877655 4455432 235441 2333333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 104 ~lv~nAg~ 111 (277)
T 4dqx_A 104 VLVNNAGF 111 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999883
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.011 Score=51.96 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=52.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc---C---Cc-e--EeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---G---VT-E--FLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l---g---~~-~--vi~~~~~~~~~~~~v~~~~~ 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ +++ . .. . ..|..+ ...+.+.+.+...
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 82 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG 82 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC-HHHHHHHHHHHHH
Confidence 4678999986 9999999998888999 999999998876654 233 2 11 1 235441 2233333333222
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 83 ~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 83 KFGKLDILVNNAGA 96 (278)
T ss_dssp HHSCCCEEEECCC-
T ss_pred HcCCCCEEEECCCC
Confidence 379999999873
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.022 Score=49.94 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-------HH----HHHHcCCce---EeCCCCCCchHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-------CE----KAKAFGVTE---FLNPNDNNEPVQQVIK 250 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-------~~----~~~~lg~~~---vi~~~~~~~~~~~~v~ 250 (371)
.++++||+|+ +++|.+.+..+...|+ +|++++++.++ .+ .+++.+... ..|..+ .....+.+.
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~ 82 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE-EDQVRAAVA 82 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC-HHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHH
Confidence 4789999986 8999999998888999 99999888653 22 223345432 235541 233333333
Q ss_pred HHhC--CCccEEEEcCCC
Q 017460 251 RITD--GGADYSFECIGD 266 (371)
Q Consensus 251 ~~~~--gg~dvVid~~g~ 266 (371)
+... +++|++|++.|.
T Consensus 83 ~~~~~~g~iD~lvnnAG~ 100 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASA 100 (274)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 3322 379999999884
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.011 Score=51.39 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=50.5
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH---HcCCce-EeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK---AFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~---~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.|... .++ ..+..+.+.+... +++|++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~d----~~~v~~~~~~~~~~~g~iD~l 76 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMS----EQEPAELIEAVTSAYGQVDVL 76 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECC----CCSHHHHHHHHHHHHSCCCEE
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEEC----HHHHHHHHHHHHHHhCCCCEE
Confidence 36889986 8999999999988999 9999999887665543 334332 222 3344444433322 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|++.|.
T Consensus 77 v~nAg~ 82 (254)
T 1zmt_A 77 VSNDIF 82 (254)
T ss_dssp EEECCC
T ss_pred EECCCc
Confidence 998874
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.006 Score=57.83 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=69.7
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
.-.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +. ++.+ +. ...|+|+-+
T Consensus 254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~~-------~l~e----ll-~~aDiVi~~ 319 (479)
T 1v8b_A 254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-VV-------TLDE----IV-DKGDFFITC 319 (479)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-EC-------CHHH----HT-TTCSEEEEC
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-ec-------CHHH----HH-hcCCEEEEC
Confidence 3468999999999999999999999999 999999998876555566653 21 1222 22 258999998
Q ss_pred CCChHHH-HHHHHHhccCCceEEEecCCC
Q 017460 264 IGDTGMI-TTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~~l-~~~~~~l~~~~G~~v~~g~~~ 291 (371)
.+....+ ...++.++++ ..++.+|...
T Consensus 320 ~~t~~lI~~~~l~~MK~g-ailiNvgrg~ 347 (479)
T 1v8b_A 320 TGNVDVIKLEHLLKMKNN-AVVGNIGHFD 347 (479)
T ss_dssp CSSSSSBCHHHHTTCCTT-CEEEECSSTT
T ss_pred CChhhhcCHHHHhhcCCC-cEEEEeCCCC
Confidence 7655444 4677889997 8888887643
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.012 Score=52.81 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=51.3
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC---hhhHHHH-HH----cCCc-eEeCCCCCCchHHHHHHHHhCCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN---PEKCEKA-KA----FGVT-EFLNPNDNNEPVQQVIKRITDGG 256 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~---~~~~~~~-~~----lg~~-~vi~~~~~~~~~~~~v~~~~~gg 256 (371)
.+.++||+|+|++|.+++..+...|+++|+++.|+ .++.+.+ ++ ++.. .+++..+ .+++.+.+. .
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~-~~~l~~~l~-----~ 226 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED-HEQLRKEIA-----E 226 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHH-----T
T ss_pred cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch-HHHHHhhhc-----C
Confidence 57899999999999999999999999889999999 6665544 22 2322 2344420 011222221 5
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|+||++++.
T Consensus 227 aDiIINaTp~ 236 (315)
T 3tnl_A 227 SVIFTNATGV 236 (315)
T ss_dssp CSEEEECSST
T ss_pred CCEEEECccC
Confidence 8999999864
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.035 Score=47.08 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=67.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh-hHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE-KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.|.+|||+|+|.+|...+..+...|+ +|++++.+.. ..+.+.+.+--..+...- .+. .-.++|+||-++
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~~i~~~~-~~~--------dL~~adLVIaAT 99 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLRVKRKKV-GEE--------DLLNVFFIVVAT 99 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCEEECSCC-CGG--------GSSSCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcEEEECCC-CHh--------HhCCCCEEEECC
Confidence 37899999999999999999999999 8888876543 233333333223332210 111 012799999999
Q ss_pred CChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeee-ccEEE
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLS-GRTLK 310 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~i~ 310 (371)
+++. ++..+...+.. |..|.........++-++... .+ .+++-
T Consensus 100 ~d~~-~N~~I~~~ak~-gi~VNvvD~p~~~~f~~Paiv-~rg~l~ia 143 (223)
T 3dfz_A 100 NDQA-VNKFVKQHIKN-DQLVNMASSFSDGNIQIPAQF-SRGRLSLA 143 (223)
T ss_dssp CCTH-HHHHHHHHSCT-TCEEEC-----CCSEECCEEE-EETTEEEE
T ss_pred CCHH-HHHHHHHHHhC-CCEEEEeCCcccCeEEEeeEE-EeCCEEEE
Confidence 9864 55555555665 888877655443444444332 23 45543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.012 Score=51.37 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=50.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh---HHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK---CEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~---~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~ 254 (371)
.++++||+|+ +++|.+.+..+...|+ +|+++.++... .+.+ ++.|... ..|..+ .+.....+.+...
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN-EEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence 4789999986 8999999999888999 89988665433 2222 2234432 235541 2233333333322
Q ss_pred --CCccEEEEcCC
Q 017460 255 --GGADYSFECIG 265 (371)
Q Consensus 255 --gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 88 ~~g~iD~lvnnAg 100 (262)
T 3ksu_A 88 EFGKVDIAINTVG 100 (262)
T ss_dssp HHCSEEEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 37999999988
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0091 Score=51.88 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE--eCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF--LNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v--i~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+..++++. .. .|..+ .+.+.+.+.+... +++|++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~-~~~~~~~~~~~~~~~g~iD~l 81 (256)
T 2d1y_A 5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLED-ERERVRFVEEAAYALGRVDVL 81 (256)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 4688999986 9999999998888999 99999998877444455432 33 34441 2233333333322 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|++.|.
T Consensus 82 v~~Ag~ 87 (256)
T 2d1y_A 82 VNNAAI 87 (256)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998873
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.02 Score=49.63 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=50.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh--HHHHHHcCCce-E--eCCCCCCchHHHHHHHHhC--CCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFGVTE-F--LNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++ .+.+++.+... . .|..+ .+.+...+.+... +++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~i 80 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDPAPALAEIARHGVKAVHHPADLSD-VAQIEALFALAEREFGGV 80 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTSCCEEEECCCTTS-HHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHhcCCceEEEeCCCCC-HHHHHHHHHHHHHHcCCC
Confidence 3678999986 9999999999888999 99999887652 12233334322 2 24431 2233333333222 379
Q ss_pred cEEEEcCC
Q 017460 258 DYSFECIG 265 (371)
Q Consensus 258 dvVid~~g 265 (371)
|++|++.|
T Consensus 81 d~lv~~Ag 88 (255)
T 2q2v_A 81 DILVNNAG 88 (255)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99999987
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0048 Score=53.92 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhH-HHHHHcCCceE-eCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC-EKAKAFGVTEF-LNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~-~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++. +.+++.++..+ .|..+ ...+.+.+.+... +++|++
T Consensus 26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~l 103 (260)
T 3gem_A 26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC-ETGIMAFIDLLKTQTSSLRAV 103 (260)
T ss_dssp -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS-HHHHHHHHHHHHHHCSCCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC-HHHHHHHHHHHHHhcCCCCEE
Confidence 3678999986 9999999998888999 899998887663 44566665433 35541 2333333333322 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|.+.|.
T Consensus 104 v~nAg~ 109 (260)
T 3gem_A 104 VHNASE 109 (260)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999873
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.024 Score=49.84 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=52.7
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-------------ChhhHHHH----HHcCCce---EeCCCCCCc
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-------------NPEKCEKA----KAFGVTE---FLNPNDNNE 243 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-------------~~~~~~~~----~~lg~~~---vi~~~~~~~ 243 (371)
-.|+++||+|+ +++|.+.++.+...|+ +|+++++ ++++.+.+ ++.|... ..|..+ .+
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~ 90 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD-DA 90 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC-HH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HH
Confidence 35789999986 8999999999989999 9999887 45554443 3344332 235541 23
Q ss_pred hHHHHHHHHhC--CCccEEEEcCCC
Q 017460 244 PVQQVIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 244 ~~~~~v~~~~~--gg~dvVid~~g~ 266 (371)
...+.+.+... +++|++|++.|.
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 33333333322 379999999874
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.013 Score=50.91 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=50.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.+.++||+|+ +++|.+.+..+...|+ +|+++ .+++++.+.+ ++.|.. . ..|..+ .+.....+.+...
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN-AAEVEAAISAAADKF 84 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence 4789999986 8999999998888999 88887 5555544332 334432 1 235541 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 85 g~id~lv~nAg~ 96 (259)
T 3edm_A 85 GEIHGLVHVAGG 96 (259)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999998863
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0039 Score=54.12 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=31.9
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.+|+|+|+|++|..++..+...|++++++++.+.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 47899999999999999999999988999999887
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.011 Score=50.82 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=52.4
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhC--CCccEEEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITD--GGADYSFE 262 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~--gg~dvVid 262 (371)
++++||+|+ |++|.+.+..+...|+ +|+++++++++ ..+++++..+ .|.. +.+..+.+.+... +++|++|+
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~g~id~lv~ 76 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLE--KDDPKGLVKRALEALGGLHVLVH 76 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTT--TSCHHHHHHHHHHHHTSCCEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCc--hHHHHHHHHHHHHHcCCCCEEEE
Confidence 568999986 9999999999988999 99999998776 3344564322 3544 2344444443322 37999999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.|.
T Consensus 77 ~Ag~ 80 (239)
T 2ekp_A 77 AAAV 80 (239)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8873
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.012 Score=51.71 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=52.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC--ceEeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV--TEFLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~--~~vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
.+.+++|+|+|++|.+++..+...|+++|+++.|+.+|.+.+ ++++. ..++... ++ ....+|+||+
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~----~l-------~~~~~DivIn 187 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYE----AL-------EGQSFDIVVN 187 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG----GG-------TTCCCSEEEE
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH----Hh-------cccCCCEEEE
Confidence 578999999999999999988889977999999999887655 55553 2233321 11 1137999999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+++.
T Consensus 188 aTp~ 191 (272)
T 3pwz_A 188 ATSA 191 (272)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 9875
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.012 Score=51.34 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=53.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcC--Cce-EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFG--VTE-FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg--~~~-vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. ++. +.. ..|..+ ...+.+.+.+... +++|
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~g~iD 88 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK-RASVDAAMQKAIDALGGFD 88 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC-HHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4789999986 9999999999988999 9999999988776553 342 221 235441 2233333333222 3799
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
++|++.|
T Consensus 89 ~lv~~Ag 95 (263)
T 3ak4_A 89 LLCANAG 95 (263)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999987
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.01 Score=51.96 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=61.9
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+.+++|+|+|++|.+++..+...|. +|+++.|+.+|.+.+.+++.. +.... + + ..+|+||++++.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~-~~~~~--~--l---------~~~DiVInaTp~ 182 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCD-CFMEP--P--K---------SAFDLIINATSA 182 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCE-EESSC--C--S---------SCCSEEEECCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-EecHH--H--h---------ccCCEEEEcccC
Confidence 8899999999999999999999995 999999999988766577753 33332 1 1 168999999864
Q ss_pred hH----HH--HHHHHHhccCCceEEEecC
Q 017460 267 TG----MI--TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 267 ~~----~l--~~~~~~l~~~~G~~v~~g~ 289 (371)
.. .+ ......++++ ..++.+..
T Consensus 183 Gm~~~~~l~~~~l~~~l~~~-~~v~D~vY 210 (269)
T 3phh_A 183 SLHNELPLNKEVLKGYFKEG-KLAYDLAY 210 (269)
T ss_dssp CCCCSCSSCHHHHHHHHHHC-SEEEESCC
T ss_pred CCCCCCCCChHHHHhhCCCC-CEEEEeCC
Confidence 21 11 1222256675 66666643
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.011 Score=52.33 Aligned_cols=76 Identities=26% Similarity=0.299 Sum_probs=53.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCce-E--eCCCCCCch-HHHHHHHHhCCCccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTE-F--LNPNDNNEP-VQQVIKRITDGGADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~-v--i~~~~~~~~-~~~~v~~~~~gg~dv 259 (371)
+|.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. +++... . .|.. +.. +.+.+.+. +++|+
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~--d~~~v~~~~~~~--~~iD~ 89 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQ--DLSSVRRFADGV--SGADV 89 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTT--CHHHHHHHHHTC--CCEEE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCC--CHHHHHHHHHhc--CCCCE
Confidence 5789999986 9999999999888999 9999999998877663 454322 2 2443 222 22222222 47999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|.+.|.
T Consensus 90 lv~nAg~ 96 (291)
T 3rd5_A 90 LINNAGI 96 (291)
T ss_dssp EEECCCC
T ss_pred EEECCcC
Confidence 9998873
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.029 Score=47.69 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=50.7
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCc---eEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVT---EFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~---~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. +++.. ...|.. +..-.+.+.+.....+|+++.+
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~--~~~~v~~~~~~~~~~~d~lv~~ 79 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLA--SHQEVEQLFEQLDSIPSTVVHS 79 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTT--CHHHHHHHHHSCSSCCSEEEEC
T ss_pred EEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCC--CHHHHHHHHHHHhhcCCEEEEe
Confidence 5899986 8999999999989999 8999999998877664 44332 123444 2222222222222345999998
Q ss_pred CCC
Q 017460 264 IGD 266 (371)
Q Consensus 264 ~g~ 266 (371)
.|.
T Consensus 80 Ag~ 82 (230)
T 3guy_A 80 AGS 82 (230)
T ss_dssp CCC
T ss_pred CCc
Confidence 873
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.013 Score=50.96 Aligned_cols=94 Identities=24% Similarity=0.407 Sum_probs=64.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHhCCCcc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
++++++||-+|+|. |..++.+++ .|+ +|++++.++...+.+++ .+.. .++. .++.+. +..+.||
T Consensus 118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~-----~d~~~~---~~~~~fD 186 (254)
T 2nxc_A 118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE-----GSLEAA---LPFGPFD 186 (254)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE-----SCHHHH---GGGCCEE
T ss_pred cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEE-----CChhhc---CcCCCCC
Confidence 67889999999876 777777666 588 99999999998877754 3432 2221 123222 2234899
Q ss_pred EEEEcCCC---hHHHHHHHHHhccCCceEEEecC
Q 017460 259 YSFECIGD---TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 259 vVid~~g~---~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+|+..... ...++.+.+.|+++ |+++..+.
T Consensus 187 ~Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~ 219 (254)
T 2nxc_A 187 LLVANLYAELHAALAPRYREALVPG-GRALLTGI 219 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHcCCC-CEEEEEee
Confidence 99975532 23467778889997 99888653
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.011 Score=51.06 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh-hhHH-HHHHcCCce---EeCCCCCCchHHHHHHHHhC--CCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCE-KAKAFGVTE---FLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~-~~~~-~~~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++ ++.+ .+++.+... ..|..+ .+.+...+.+... +++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i 83 (249)
T 2ew8_A 6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGRC 83 (249)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHcCCC
Confidence 4678999986 9999999999888999 999998887 6554 345555432 235441 2233333333322 379
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|++|++.|.
T Consensus 84 d~lv~nAg~ 92 (249)
T 2ew8_A 84 DILVNNAGI 92 (249)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999998873
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.034 Score=49.34 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh--hHHH----HHHcCCceE-e--CCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--KCEK----AKAFGVTEF-L--NPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~--~~~~----~~~lg~~~v-i--~~~~~~~~~~~~v~~~~~- 254 (371)
+++++||+|+ |++|.+.+..+...|+ +|+++.++.+ +.+. +++.|.... + |..+ .......+.+...
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSD-ESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHHH
Confidence 5789999986 8999999999989999 9999887632 2222 244554322 2 4431 2223333333222
Q ss_pred -CCccEEEEcCCCh--------------------------HHHHHHHHHhccCCceEEEecCCCC
Q 017460 255 -GGADYSFECIGDT--------------------------GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 255 -gg~dvVid~~g~~--------------------------~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+++|+++.+.|.. ...+.++..+.++ |++|.+++...
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~Iv~isS~~~ 189 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-ASIITTSSIQA 189 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCGGG
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-CEEEEECChhh
Confidence 3799999988731 0123344456666 89999876543
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.012 Score=50.99 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=53.2
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-H---c-C--Cc-eEeCC--CCCCchHHHHHHHHh
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-A---F-G--VT-EFLNP--NDNNEPVQQVIKRIT 253 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~---l-g--~~-~vi~~--~~~~~~~~~~v~~~~ 253 (371)
-+++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. + . + +. ...|. .+ .....+.+.+..
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~ 87 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCT-SENCQQLAQRIA 87 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCC-HHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCC-HHHHHHHHHHHH
Confidence 35789999986 8999999998888999 9999999988765542 1 1 2 22 12344 21 223333333332
Q ss_pred C--CCccEEEEcCCC
Q 017460 254 D--GGADYSFECIGD 266 (371)
Q Consensus 254 ~--gg~dvVid~~g~ 266 (371)
. +++|++|++.|.
T Consensus 88 ~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHCSCCSEEEECCCC
T ss_pred HhCCCCCEEEECCcc
Confidence 2 379999999874
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.015 Score=51.37 Aligned_cols=97 Identities=11% Similarity=0.182 Sum_probs=68.3
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc----CCc---eEeCCCCCCchHHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT---EFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~---~vi~~~~~~~~~~~~v~~ 251 (371)
.+..+++++.+||-+|+|. |..+..+++..|+ +|++++.+++..+.+++. |.. .++.. ++ ..
T Consensus 57 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-----d~----~~ 125 (287)
T 1kpg_A 57 LGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-----GW----EQ 125 (287)
T ss_dssp HTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-----CG----GG
T ss_pred HHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-----Ch----hh
Confidence 3566788999999999876 7778888877798 999999999988877553 321 12211 11 11
Q ss_pred HhCCCccEEEEc-----CCC---hHHHHHHHHHhccCCceEEEec
Q 017460 252 ITDGGADYSFEC-----IGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 252 ~~~gg~dvVid~-----~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+. +.+|+|+.. ++. ...++.+.+.|+++ |+++...
T Consensus 126 ~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 168 (287)
T 1kpg_A 126 FD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHT 168 (287)
T ss_dssp CC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred CC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEE
Confidence 12 579999865 221 23578888999998 9988754
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.035 Score=49.50 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=56.3
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|........ . +. + ...|+||-++..+
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~--~-e~---~-----~~aDvvi~~vp~~ 75 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASA--R-EF---A-----GVVDALVILVVNA 75 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSS--T-TT---T-----TTCSEEEECCSSH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCH--H-HH---H-----hcCCEEEEECCCH
Confidence 579999999999998888888898 999999999999999888876422221 1 11 0 1578888888875
Q ss_pred HHHHHHH
Q 017460 268 GMITTAL 274 (371)
Q Consensus 268 ~~l~~~~ 274 (371)
..++..+
T Consensus 76 ~~~~~v~ 82 (303)
T 3g0o_A 76 AQVRQVL 82 (303)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0085 Score=52.59 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=54.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++++... ..|..+ ...+.+.+.+... +++|
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 87 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN-EVSVRALIDFTIDTFGRLD 87 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4789999986 8999999999989999 999999998876655 4455422 235542 2333333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++++.|.
T Consensus 88 ~lv~nAg~ 95 (271)
T 3tzq_B 88 IVDNNAAH 95 (271)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998873
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0098 Score=52.53 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.++++||+|+ +++|.+.+..+...|+ +|++++++.++.+.+ ++++... ..|..+ .......+.+... +++|
T Consensus 4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 81 (281)
T 3zv4_A 4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS-LQDQKRAAERCLAAFGKID 81 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcCCCC
Confidence 4788999986 8999999999989999 999999998887665 4454322 235441 2333333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++++.|.
T Consensus 82 ~lvnnAg~ 89 (281)
T 3zv4_A 82 TLIPNAGI 89 (281)
T ss_dssp EEECCCCC
T ss_pred EEEECCCc
Confidence 99999873
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.016 Score=53.28 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=65.5
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
.+|+|+|+|.+|..++..+.. .. .|.+.+++.++.+.++++.....+|.. + .+.+.++.. ++|+||++++..
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~--d---~~~l~~~~~-~~DvVi~~~p~~ 88 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDAS--N---FDKLVEVMK-EFELVIGALPGF 88 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTT--C---HHHHHHHHT-TCSEEEECCCGG
T ss_pred cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecC--C---HHHHHHHHh-CCCEEEEecCCc
Confidence 479999999999998887743 45 888999999998888765433344543 2 233444433 689999999875
Q ss_pred HHHHHHHHHhccCCceEEEecC
Q 017460 268 GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 268 ~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.....+-.|+..+ -.++.+..
T Consensus 89 ~~~~v~~~~~~~g-~~yvD~s~ 109 (365)
T 3abi_A 89 LGFKSIKAAIKSK-VDMVDVSF 109 (365)
T ss_dssp GHHHHHHHHHHHT-CEEEECCC
T ss_pred ccchHHHHHHhcC-cceEeeec
Confidence 4555556677775 67777753
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.014 Score=50.53 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=64.1
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhC--CCccEEEEc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD--GGADYSFEC 263 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~--gg~dvVid~ 263 (371)
++++||+|+ |++|.+.+..+...|+ +|+++++++++... ....++.. +.......+.+... +++|++|.+
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~-d~~~v~~~~~~~~~~~g~iD~li~~ 94 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDS-GEEEIKSVIEKINSKSIKVDTFVCA 94 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCS-SHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeC-CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 678999986 8999999999989999 89999988765321 11223333 13344444444433 379999999
Q ss_pred CCCh-----------H---------------HHHHHHHHhccCCceEEEecCCC
Q 017460 264 IGDT-----------G---------------MITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~-----------~---------------~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
.|.. + ..+.++..+.++ |+++.+++..
T Consensus 95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~ 147 (251)
T 3orf_A 95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGASA 147 (251)
T ss_dssp CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEechh
Confidence 8830 0 123444556665 8999987643
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.038 Score=49.52 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=56.7
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
-.+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+.. . .+..+.+. ..|+||-+++.
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~-~------~~~~~~~~-----~aDvvi~~vp~ 87 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASV-C------ESPAEVIK-----KCKYTIAMLSD 87 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEE-C------SSHHHHHH-----HCSEEEECCSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeE-c------CCHHHHHH-----hCCEEEEEcCC
Confidence 3579999999999999998888998 9999999999999988888642 1 12333332 36888888877
Q ss_pred hHHHHHHH
Q 017460 267 TGMITTAL 274 (371)
Q Consensus 267 ~~~l~~~~ 274 (371)
+..++..+
T Consensus 88 ~~~~~~v~ 95 (310)
T 3doj_A 88 PCAALSVV 95 (310)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54555544
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.012 Score=51.07 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----c--C-C-ceE--eCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----F--G-V-TEF--LNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----l--g-~-~~v--i~~~~~~~~~~~~v~~~~~ 254 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+ . + . ... .|..+ .+...+.+.+...
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD-CTKADTEIKDIHQ 83 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC-HHHHHHHHHHHHH
Confidence 4678999986 8999999988888899 99999999887665422 1 2 1 122 35541 2333333333322
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 84 ~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 84 KYGAVDILVNAAAM 97 (250)
T ss_dssp HHCCEEEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 379999999884
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.036 Score=49.22 Aligned_cols=87 Identities=16% Similarity=0.285 Sum_probs=62.4
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|+.. . .+..+.+. ++|+||.+++.+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~-~------~~~~~~~~-----~~D~vi~~v~~~ 72 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET-A------STAKAIAE-----QCDVIITMLPNS 72 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-C------SSHHHHHH-----HCSEEEECCSSH
T ss_pred ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee-c------CCHHHHHh-----CCCEEEEECCCH
Confidence 379999999999998888888898 8999999999988887777532 1 12323332 479999999865
Q ss_pred HHHHHHH-------HHhccCCceEEEec
Q 017460 268 GMITTAL-------QSCCDGWGLAVTLG 288 (371)
Q Consensus 268 ~~l~~~~-------~~l~~~~G~~v~~g 288 (371)
..++..+ ..++++ ..++.++
T Consensus 73 ~~~~~~~~~~~~l~~~l~~~-~~vv~~s 99 (299)
T 1vpd_A 73 PHVKEVALGENGIIEGAKPG-TVLIDMS 99 (299)
T ss_dssp HHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred HHHHHHHhCcchHhhcCCCC-CEEEECC
Confidence 5555554 445664 5566554
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.011 Score=52.06 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=52.9
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC-
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~- 254 (371)
+..++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+... ..|..+ .+...+.+.+...
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS-TDEVHAAVAAAVER 98 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 345789999986 8999999988888899 999999998876554 3334332 235541 2333333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 99 ~g~id~lv~nAg~ 111 (279)
T 3sju_A 99 FGPIGILVNSAGR 111 (279)
T ss_dssp HCSCCEEEECCCC
T ss_pred cCCCcEEEECCCC
Confidence 379999999874
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.013 Score=50.78 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=71.1
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc----eEeCCCCCCchHHHHHHHHh
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT----EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~----~vi~~~~~~~~~~~~v~~~~ 253 (371)
+.+...++++.+||-+|+| .|..+..+++..|+ +|++++.+++..+.+++.... .++..+ ...+ ...
T Consensus 47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d--~~~~-----~~~ 117 (266)
T 3ujc_A 47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEAND--ILTK-----EFP 117 (266)
T ss_dssp HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECC--TTTC-----CCC
T ss_pred HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECc--cccC-----CCC
Confidence 3456678899999999987 58888888887788 999999999999999876432 122111 0010 111
Q ss_pred CCCccEEEEcCCC--------hHHHHHHHHHhccCCceEEEecC
Q 017460 254 DGGADYSFECIGD--------TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 254 ~gg~dvVid~~g~--------~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+.+|+|+....- ...++.+.+.|+++ |.++....
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 160 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY 160 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence 2389999875332 12467888899997 99887643
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.011 Score=51.51 Aligned_cols=78 Identities=27% Similarity=0.391 Sum_probs=53.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-eE--eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-EF--LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++++.. .+ .|..+ .+.+.+.+.+... +++|
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id 88 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS-EKDVQTALALAKGKFGRVD 88 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCCCC
Confidence 4688999986 9999999999988999 999999988766554 445542 22 34441 2233333333322 3799
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
++|.+.|
T Consensus 89 ~li~~Ag 95 (265)
T 2o23_A 89 VAVNCAG 95 (265)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9999887
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.013 Score=51.28 Aligned_cols=79 Identities=22% Similarity=0.422 Sum_probs=53.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-H----HcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-K----AFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~----~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ + +.+... ..|..+ .+.+...+.+...
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 97 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKEKF 97 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4688999986 9999999999988999 999999998776543 2 235432 235541 2233333333222
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 98 g~iD~lvnnAg~ 109 (267)
T 1vl8_A 98 GKLDTVVNAAGI 109 (267)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999873
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.013 Score=51.09 Aligned_cols=79 Identities=29% Similarity=0.482 Sum_probs=53.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc----CCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----GVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ +++ +... . .|..+ .+.+.+.+.+...
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT-PEGVDAVVESVRSSF 83 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4678999986 9999999999988999 999999998776543 222 4321 2 35541 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 84 g~id~lv~~Ag~ 95 (263)
T 3ai3_A 84 GGADILVNNAGT 95 (263)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.028 Score=51.49 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=66.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC----hhh---------HHHHHHcCCceEeCCCCCCchHHHHHHH
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN----PEK---------CEKAKAFGVTEFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~----~~~---------~~~~~~lg~~~vi~~~~~~~~~~~~v~~ 251 (371)
-++.+|+|+|+|..|..+++++..+|+++|++++++ .+| ..++++.... .. ..++.+.++
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~----~~--~~~L~eav~- 262 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE----RL--SGDLETALE- 262 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT----CC--CSCHHHHHT-
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc----Cc--hhhHHHHHc-
Confidence 357899999999999999999999999899999987 544 3444443211 01 234555543
Q ss_pred HhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 252 ITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 252 ~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
++|++|-+++..-.-++.++.++++ ..++.++.+.
T Consensus 263 ----~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalSNPt 297 (388)
T 1vl6_A 263 ----GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV 297 (388)
T ss_dssp ----TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS
T ss_pred ----cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcCCCC
Confidence 5799999988432345677888876 7666665543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.035 Score=48.69 Aligned_cols=79 Identities=24% Similarity=0.308 Sum_probs=51.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-------------ChhhHHHH----HHcCCce---EeCCCCCCch
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-------------NPEKCEKA----KAFGVTE---FLNPNDNNEP 244 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-------------~~~~~~~~----~~lg~~~---vi~~~~~~~~ 244 (371)
.++++||+|+ +++|.+.+..+...|+ +|+++++ +.++.+.+ ++.+... ..|..+ .+.
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~ 87 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD-FDR 87 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHH
Confidence 4789999986 8999999999989999 9999877 44444332 3334322 235441 233
Q ss_pred HHHHHHHHhC--CCccEEEEcCCC
Q 017460 245 VQQVIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 245 ~~~~v~~~~~--gg~dvVid~~g~ 266 (371)
+.+.+.+... +++|++|++.|.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 3333333322 379999998874
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.013 Score=51.22 Aligned_cols=78 Identities=27% Similarity=0.312 Sum_probs=52.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-Hc-----CCce-E--eCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF-----GVTE-F--LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l-----g~~~-v--i~~~~~~~~~~~~v~~~~~- 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. ++ +... . .|..+ .+.+.+.+.+...
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER 89 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 4688999986 9999999998888999 9999999987765442 22 4321 2 35541 2333333333322
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
+++|++|++.|
T Consensus 90 ~g~id~lv~nAg 101 (267)
T 1iy8_A 90 FGRIDGFFNNAG 101 (267)
T ss_dssp HSCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 37999999887
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.012 Score=51.12 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=53.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC-CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD-GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-gg 256 (371)
++.++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++.|... ..|..+ .+.....+.+... ++
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN-EDEVTAFLNAADAHAP 83 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC-HHHHHHHHHHHHhhCC
Confidence 4788999986 8999999999989999 999999998876554 3335432 235541 2233333332211 58
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 84 id~lv~nAg~ 93 (252)
T 3h7a_A 84 LEVTIFNVGA 93 (252)
T ss_dssp EEEEEECCCC
T ss_pred ceEEEECCCc
Confidence 9999999884
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.012 Score=51.76 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=53.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+.. . ..|..+ .+.+.+.+.+... +
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ-PDQVRGMLDQMTGELG 108 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999985 8999999998888999 999999988776544 333432 1 235541 2333333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 109 ~iD~lvnnAg~ 119 (276)
T 3r1i_A 109 GIDIAVCNAGI 119 (276)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.02 Score=49.01 Aligned_cols=74 Identities=14% Similarity=0.250 Sum_probs=52.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-c-CCce-EeCCCCCCchHHHHHHHHhCC--CccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-F-GVTE-FLNPNDNNEPVQQVIKRITDG--GADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-l-g~~~-vi~~~~~~~~~~~~v~~~~~g--g~dv 259 (371)
++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ + +... ..|.. +. +.+.++... ++|+
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~--~~---~~~~~~~~~~~~id~ 79 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLG--DW---DATEKALGGIGPVDL 79 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTT--CH---HHHHHHHTTCCCCSE
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCC--CH---HHHHHHHHHcCCCCE
Confidence 4678999986 9999999999988999 99999999887665533 3 3322 22443 22 233333333 6899
Q ss_pred EEEcCC
Q 017460 260 SFECIG 265 (371)
Q Consensus 260 Vid~~g 265 (371)
+|.+.|
T Consensus 80 vi~~Ag 85 (244)
T 1cyd_A 80 LVNNAA 85 (244)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 999987
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.01 Score=50.85 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=47.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe--CCCCCCchHH---HHHHHHhC-CCccE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL--NPNDNNEPVQ---QVIKRITD-GGADY 259 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi--~~~~~~~~~~---~~v~~~~~-gg~dv 259 (371)
+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+ +....+ |..+ .+... +.+.+..+ +++|+
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~g~id~ 75 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNW-TEQEQSILEQTASSLQGSQVDG 75 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCH-HHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc-----cccEEEeCCCCC-HHHHHHHHHHHHHHhCCCCCCE
Confidence 568999986 9999999999989999 9999998876532 111122 3221 11222 22222232 48999
Q ss_pred EEEcCC
Q 017460 260 SFECIG 265 (371)
Q Consensus 260 Vid~~g 265 (371)
+|.+.|
T Consensus 76 lv~~Ag 81 (236)
T 1ooe_A 76 VFCVAG 81 (236)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 999988
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=56.84 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=66.7
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-----eEeCCCCCCchHHHHHHHHhCCCcc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-----EFLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-----~vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
..+|.+||-+|.|. |..+..+++..+. ++++++.+++-.+.+++.... .++. .++.+.+..+..+.||
T Consensus 58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~-----~~a~~~~~~~~~~~FD 130 (236)
T 3orh_A 58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK-----GLWEDVAPTLPDGHFD 130 (236)
T ss_dssp TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE-----SCHHHHGGGSCTTCEE
T ss_pred ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEe-----ehHHhhcccccccCCc
Confidence 46789999999874 7778888877776 899999999998888764332 1221 2333333334444799
Q ss_pred EE-EEcCCC----------hHHHHHHHHHhccCCceEEEec
Q 017460 259 YS-FECIGD----------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 259 vV-id~~g~----------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.| +|++.. ...++++.+.|+|| |+++.+.
T Consensus 131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~ 170 (236)
T 3orh_A 131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN 170 (236)
T ss_dssp EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred eEEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence 87 565432 12466788899998 9998763
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.015 Score=50.20 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=53.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+... ..|..+ ..+..+.+.+... +
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD-PESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4789999986 9999999999989999 999999998876654 2234321 234441 2233333333222 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 86 ~id~li~~Ag~ 96 (253)
T 3qiv_A 86 GIDYLVNNAAI 96 (253)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999874
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0049 Score=54.03 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=52.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
.++++||+|+ |++|.+.+..+...|+ +|++++++.++.+.+..-... ...|..+ ...+.+.+.+... +++|++|
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~lv 92 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTD-KYTFDTAITRAEKIYGPADAIV 92 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTC-HHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCC-HHHHHHHHHHHHHHCCCCCEEE
Confidence 3678999986 8999999999989999 899999988776544222221 1235441 2333333333322 3799999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 93 nnAg~ 97 (266)
T 3p19_A 93 NNAGM 97 (266)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99884
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.019 Score=52.10 Aligned_cols=87 Identities=21% Similarity=0.379 Sum_probs=63.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+.+|.|+|.|.+|...++.++..|. +|++.+++.++ +.++++|+.. . ++.+.+. ..|+|+.++.
T Consensus 149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~----~----~l~~~l~-----~aDvVil~vp 213 (334)
T 2dbq_A 149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF----K----PLEDLLR-----ESDFVVLAVP 213 (334)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE----C----CHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc----C----CHHHHHh-----hCCEEEECCC
Confidence 46799999999999999999999999 99999998877 6666677531 1 2333332 4789999887
Q ss_pred ChH----HH-HHHHHHhccCCceEEEec
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g 288 (371)
... .+ ...+..++++ ..++.++
T Consensus 214 ~~~~t~~~i~~~~~~~mk~~-ailIn~s 240 (334)
T 2dbq_A 214 LTRETYHLINEERLKLMKKT-AILINIA 240 (334)
T ss_dssp CCTTTTTCBCHHHHHHSCTT-CEEEECS
T ss_pred CChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence 543 12 3556778886 7777765
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0066 Score=51.98 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=67.4
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhC--
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~~-- 254 (371)
...++.+||-+|+| .|..++.+++.+ +. +|++++.+++..+.+++ .|...-+... ..+..+.+..+..
T Consensus 69 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~--~~d~~~~l~~l~~~~ 144 (232)
T 3cbg_A 69 SLTGAKQVLEIGVF-RGYSALAMALQLPPDG-QIIACDQDPNATAIAKKYWQKAGVAEKISLR--LGPALATLEQLTQGK 144 (232)
T ss_dssp HHHTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEE--ESCHHHHHHHHHTSS
T ss_pred HhcCCCEEEEecCC-CCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--EcCHHHHHHHHHhcC
Confidence 34567899999987 688888999887 45 99999999998877754 3542211111 1234444444432
Q ss_pred --CCccEEEEcCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 255 --GGADYSFECIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 255 --gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.||+||-.... ...++.+.+.|+++ |.++.-.
T Consensus 145 ~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~ 182 (232)
T 3cbg_A 145 PLPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDN 182 (232)
T ss_dssp SCCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEEC
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 479999843322 23478888999997 9887753
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0073 Score=52.26 Aligned_cols=79 Identities=29% Similarity=0.464 Sum_probs=54.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc---eEeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT---EFLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~---~vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++.. ...|..+ .+...+.+.+... +++|
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 85 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN-PESIEAVLKAITDEFGGVD 85 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHCCCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4788999985 8999999999989999 999999998877665 333322 2235542 2333333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++++.|.
T Consensus 86 ~lv~nAg~ 93 (248)
T 3op4_A 86 ILVNNAGI 93 (248)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.016 Score=50.06 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=53.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-eE--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-EF--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.|.. .. .|..+ .+.+...+.+... +
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD-RQGVDAAVASTVEALG 83 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4688999986 9999999999888999 999999998876544 223432 12 35441 2233333333322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|++.|
T Consensus 84 ~id~lv~nAg 93 (247)
T 2jah_A 84 GLDILVNNAG 93 (247)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.016 Score=50.56 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=54.6
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
-.++++||+|+ +++|.+.+..+...|+ +|++++++.++.+.+ ++.|... ..|..+ .+...+.+.+...
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD-DAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 35789999986 8999999998888999 999999998876554 2334322 235542 2333333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 87 g~id~lv~nAg~ 98 (264)
T 3ucx_A 87 GRVDVVINNAFR 98 (264)
T ss_dssp SCCSEEEECCCS
T ss_pred CCCcEEEECCCC
Confidence 379999998864
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.016 Score=49.82 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=47.9
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe--CCCCCCchHHHH---HHHHhC-CCc
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL--NPNDNNEPVQQV---IKRITD-GGA 257 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi--~~~~~~~~~~~~---v~~~~~-gg~ 257 (371)
..+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+ +....+ |..+ .+.+.+. +.+..+ +++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~g~i 77 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSF-TEQADQVTAEVGKLLGDQKV 77 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCH-HHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEEEcCCCC-HHHHHHHHHHHHHHhCCCCC
Confidence 45788999986 8999999999988999 9999988876532 111122 3321 1122222 222232 489
Q ss_pred cEEEEcCC
Q 017460 258 DYSFECIG 265 (371)
Q Consensus 258 dvVid~~g 265 (371)
|++|.+.|
T Consensus 78 D~lv~~Ag 85 (241)
T 1dhr_A 78 DAILCVAG 85 (241)
T ss_dssp EEEEECCC
T ss_pred CEEEEccc
Confidence 99999987
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.013 Score=51.15 Aligned_cols=79 Identities=22% Similarity=0.395 Sum_probs=54.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----H-cCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----A-FGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~-lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ +++|.+.+..+...|+ +|++++++.++.+.+. + .+... ..|..+ .+...+.+.+...
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE-PDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-TTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4788999986 8999999999989999 9999999988765542 2 34322 235542 3344444443322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 97 g~id~lv~nAg~ 108 (266)
T 4egf_A 97 GGLDVLVNNAGI 108 (266)
T ss_dssp TSCSEEEEECCC
T ss_pred CCCCEEEECCCc
Confidence 379999998873
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.015 Score=51.09 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=51.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
++.+++|+|+|++|.+++..+...|+ +|+++.++.++.+.+ ++++....++..+ ... +.+ +++|+||+++
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~-~~~----~~~---~~~DivVn~t 188 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS-MDE----LEG---HEFDLIINAT 188 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC-SGG----GTT---CCCSEEEECC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEec-HHH----hcc---CCCCEEEECC
Confidence 57899999999999999999999997 999999999886554 5555310011110 111 111 4799999999
Q ss_pred CCh
Q 017460 265 GDT 267 (371)
Q Consensus 265 g~~ 267 (371)
+..
T Consensus 189 ~~~ 191 (271)
T 1nyt_A 189 SSG 191 (271)
T ss_dssp SCG
T ss_pred CCC
Confidence 864
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.012 Score=50.85 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=53.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce----EeCCCCCCchHHHHHHHHh-CCCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE----FLNPNDNNEPVQQVIKRIT-DGGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~----vi~~~~~~~~~~~~v~~~~-~gg~d 258 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++++... ..|..+ .+.+.+.+.... -+++|
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~id 87 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD-AEAMTAAAAEAEAVAPVS 87 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC-HHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC-HHHHHHHHHHHHhhCCCc
Confidence 4688999986 9999999999888999 999999998876554 4444321 234441 222333332221 14799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 88 ~li~~Ag~ 95 (254)
T 2wsb_A 88 ILVNSAGI 95 (254)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998873
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.012 Score=48.69 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=67.5
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH----cCC-c--eEeCCCCCCchHHHHHHHH
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGV-T--EFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~-~--~vi~~~~~~~~~~~~v~~~ 252 (371)
...++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++ .|. . .++..+ ..++ ...
T Consensus 17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~----~~~ 89 (197)
T 3eey_A 17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDG--HQNM----DKY 89 (197)
T ss_dssp HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSC--GGGG----GGT
T ss_pred HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC--HHHH----hhh
Confidence 34578899999999876 778888888764 2399999999988877744 343 1 233221 1111 112
Q ss_pred hCCCccEEEEcCCC---------------hHHHHHHHHHhccCCceEEEec
Q 017460 253 TDGGADYSFECIGD---------------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 253 ~~gg~dvVid~~g~---------------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
..+.+|+|+-..+- ...+..+.+.|+++ |+++...
T Consensus 90 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~ 139 (197)
T 3eey_A 90 IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVI 139 (197)
T ss_dssp CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEE
Confidence 23479999865432 24688899999997 9988764
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.008 Score=52.27 Aligned_cols=79 Identities=18% Similarity=0.355 Sum_probs=48.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ +++|.+.+..+...|+ +|+++++++++.+.+ ++++.. . ..|..+ .+...+.+.+... +++|
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 83 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN-EADATAALAFAKQEFGHVH 83 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4788999986 8999999999989999 999999988776554 444432 1 235441 2233333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|++.|.
T Consensus 84 ~lv~nAg~ 91 (257)
T 3tpc_A 84 GLVNCAGT 91 (257)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998873
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.017 Score=49.70 Aligned_cols=79 Identities=25% Similarity=0.364 Sum_probs=54.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.++++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+ ++.+... ..|..+ ...+.+.+.+... +
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD-IESIQNFFAEIKAENL 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence 3678999986 9999999988888999 999999998876554 3334432 235441 2333343444322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 82 ~id~li~~Ag~ 92 (247)
T 3lyl_A 82 AIDILVNNAGI 92 (247)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.013 Score=51.07 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ |++|.+.+..+...|+ +|++++++.++.+.+ ++.+... ..|..+ .+.+...+..... +
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH-SDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHhcC
Confidence 4789999986 9999999988888899 999999998876554 3334422 235441 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|++|.+.|.
T Consensus 106 ~id~lv~~Ag~ 116 (262)
T 3rkr_A 106 RCDVLVNNAGV 116 (262)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999875
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.013 Score=50.63 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=52.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC-Cce-EeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG-VTE-FLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg-~~~-vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+.++. +.. ..|.. +....+.+.+.. +++|++|+
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~-~~id~lv~ 80 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVT--KKKQIDQFANEV-ERLDVLFN 80 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTT--CHHHHHHHHHHC-SCCSEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCC--CHHHHHHHHHHh-CCCCEEEE
Confidence 4688999986 9999999999888999 9999999887765544332 211 23444 333222332222 37999999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.|.
T Consensus 81 ~Ag~ 84 (246)
T 2ag5_A 81 VAGF 84 (246)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8873
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.026 Score=50.83 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=63.6
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...- +..+.+ ...|+||-++..
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~-------~~~e~~-----~~aDvVi~~vp~ 97 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIHE-------QARAAA-----RDADIVVSMLEN 97 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEES-------SHHHHH-----TTCSEEEECCSS
T ss_pred CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEeeC-------CHHHHH-----hcCCEEEEECCC
Confidence 4589999999999999988888898 999999999999988887764221 222222 157999999987
Q ss_pred hHHHHHHH------HHhccCCceEEEecC
Q 017460 267 TGMITTAL------QSCCDGWGLAVTLGV 289 (371)
Q Consensus 267 ~~~l~~~~------~~l~~~~G~~v~~g~ 289 (371)
+..++..+ ..+.++ ..++.++.
T Consensus 98 ~~~~~~v~~~~~~~~~l~~~-~~vi~~st 125 (320)
T 4dll_A 98 GAVVQDVLFAQGVAAAMKPG-SLFLDMAS 125 (320)
T ss_dssp HHHHHHHHTTTCHHHHCCTT-CEEEECSC
T ss_pred HHHHHHHHcchhHHhhCCCC-CEEEecCC
Confidence 55555444 245554 55555543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.011 Score=51.52 Aligned_cols=78 Identities=24% Similarity=0.334 Sum_probs=53.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-Hc---CCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF---GVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l---g~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++ +.. . ..|..+ .+...+.+.+... +
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN-TDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4788999986 8999999999989999 9999999988876653 22 322 1 235541 2233333333322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 83 ~id~lv~nAg 92 (257)
T 3imf_A 83 RIDILINNAA 92 (257)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999988
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.014 Score=50.78 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=53.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.++.+...|+ +|++++++.++.+.+ ++.+... ..|..+ .....+.+.+... +
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 88 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD-EQHREAVIKAALDQFG 88 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4788999986 9999999888888899 999999998876554 3344432 235441 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 89 ~id~lv~nAg~ 99 (256)
T 3gaf_A 89 KITVLVNNAGG 99 (256)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.017 Score=50.24 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=52.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHH---HhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKR---ITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~---~~~ 254 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+... ..|..+ .+.+.+.+.+ ..+
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4788999986 8999999998888999 999999998776543 2234321 235441 2223333332 222
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+++|++|++.|
T Consensus 86 g~id~lv~~Ag 96 (260)
T 2ae2_A 86 GKLNILVNNAG 96 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57999999987
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0075 Score=51.66 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=62.9
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.+|||+|+ |.+|.+.++.+...| + +|+++++++++.+.+...++..+ .|.. + .+.+.+... ++|+||.+.
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~~~~~Dl~--d---~~~~~~~~~-~~D~vv~~a 96 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQIIMGDVL--N---HAALKQAMQ-GQDIVYANL 96 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEEEEECCTT--C---HHHHHHHHT-TCSEEEEEC
T ss_pred cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcEEEEecCC--C---HHHHHHHhc-CCCEEEEcC
Confidence 57999986 999999999998899 7 99999999876543322233222 2443 2 223333333 689999988
Q ss_pred CChHH---HHHHHHHhccC-CceEEEecCCC
Q 017460 265 GDTGM---ITTALQSCCDG-WGLAVTLGVPK 291 (371)
Q Consensus 265 g~~~~---l~~~~~~l~~~-~G~~v~~g~~~ 291 (371)
+.... .+.++..+... .+++|.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~ 127 (236)
T 3qvo_A 97 TGEDLDIQANSVIAAMKACDVKRLIFVLSLG 127 (236)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred CCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence 86432 23445554432 26899887654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.02 Score=48.78 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=51.7
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-----HcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-----AFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-----~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
++++||+|+ |++|.+.++.+...|+ +|+.++++.++.+.+. +.+... . .|..+ ...+.+.+.+... +
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK-AESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC-HHHHHHHHHHHHHhcC
Confidence 578999986 8999999999999999 8999999988765542 334332 2 24441 2222222222211 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 80 ~id~li~~Ag~ 90 (235)
T 3l77_A 80 DVDVVVANAGL 90 (235)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79999999874
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.015 Score=50.99 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=53.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceE--eCCCCCCchHHHHHHHHhC--CCccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEF--LNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~v--i~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
++.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. ++..... .|..+ .+.+...+.+... +++|+
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~ 85 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRLDC 85 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 4788999986 9999999999989999 9999999988776553 3432222 34441 2233333333222 37999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|.+.|.
T Consensus 86 lv~nAg~ 92 (270)
T 1yde_A 86 VVNNAGH 92 (270)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998863
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.013 Score=51.54 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=52.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc---CCceE--eCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---GVTEF--LNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l---g~~~v--i~~~~~~~~~~~~v~~~~~--gg 256 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ +++ +-... .|..+ .+.+.+.+.+... ++
T Consensus 28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~ 105 (276)
T 2b4q_A 28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSS-EAGARRLAQALGELSAR 105 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS-HHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC-HHHHHHHHHHHHHhcCC
Confidence 4688999986 9999999999988999 999999998776544 333 31112 24431 2223333333221 37
Q ss_pred ccEEEEcCC
Q 017460 257 ADYSFECIG 265 (371)
Q Consensus 257 ~dvVid~~g 265 (371)
+|++|.+.|
T Consensus 106 iD~lvnnAg 114 (276)
T 2b4q_A 106 LDILVNNAG 114 (276)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999999987
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.017 Score=50.77 Aligned_cols=78 Identities=15% Similarity=0.297 Sum_probs=52.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.|... ..|..+ .+.+...+.+... +
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYG 98 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 4678999986 9999999999988999 999999998776543 3335322 235441 2233333333222 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 99 ~iD~lv~~Ag 108 (277)
T 2rhc_B 99 PVDVLVNNAG 108 (277)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999987
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0039 Score=56.25 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=68.5
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~--vi~~~~~~~~~~~~v~~ 251 (371)
.+...++++++||.+|+|. |..++.+++..+. .+|++++.+++..+.+++ .|... ++.. ++.+..
T Consensus 68 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~-----d~~~~~-- 139 (317)
T 1dl5_A 68 MEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG-----DGYYGV-- 139 (317)
T ss_dssp HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCC--
T ss_pred HHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEEC-----Chhhcc--
Confidence 3556788999999999876 7788888877542 379999999998877754 35432 2211 111100
Q ss_pred HhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEec
Q 017460 252 ITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 252 ~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
...+.||+|+.........+.+.+.|+++ |+++..-
T Consensus 140 ~~~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~ 175 (317)
T 1dl5_A 140 PEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI 175 (317)
T ss_dssp GGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred ccCCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence 01247999998766544456778899997 9987753
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.019 Score=51.42 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=50.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC---hhhHHHH-HHc----CCc-eEeCCCCCCchH-HHHHHHHhCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN---PEKCEKA-KAF----GVT-EFLNPNDNNEPV-QQVIKRITDG 255 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~---~~~~~~~-~~l----g~~-~vi~~~~~~~~~-~~~v~~~~~g 255 (371)
.+.++||+|+|++|.+++..+...|+++|+++.|+ .+|.+.+ +++ +.. .+++.. +.+. .+.+.
T Consensus 147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~--~l~~~~~~l~----- 219 (312)
T 3t4e_A 147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLA--DQHAFTEALA----- 219 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETT--CHHHHHHHHH-----
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechH--hhhhhHhhcc-----
Confidence 57899999999999999999999999889999999 5555443 222 322 233332 1111 22222
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|+||++++.
T Consensus 220 ~~DiIINaTp~ 230 (312)
T 3t4e_A 220 SADILTNGTKV 230 (312)
T ss_dssp HCSEEEECSST
T ss_pred CceEEEECCcC
Confidence 48999999875
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.018 Score=50.44 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHH---HHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIK---RITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~---~~~~ 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+... ..|..+ .+.+.+.+. +..+
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4788999986 9999999999988999 999999998776543 2334321 235441 222332232 2232
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 98 g~id~lv~nAg~ 109 (273)
T 1ae1_A 98 GKLNILVNNAGV 109 (273)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 589999999874
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.015 Score=49.31 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=60.9
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe--CCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL--NPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi--~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.+|||+|+ |.+|...++.+...|. +|+++++++++.+.+. -++ .++ |.. + .+.+.+... ++|+||.+.
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~-~~~~~Dl~--d---~~~~~~~~~-~~d~vi~~a 75 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHL-KVKKADVS--S---LDEVCEVCK-GADAVISAF 75 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTE-EEECCCTT--C---HHHHHHHHT-TCSEEEECC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-Cce-EEEEecCC--C---HHHHHHHhc-CCCEEEEeC
Confidence 58999986 9999999999999998 9999999987653221 122 222 332 2 233444433 699999998
Q ss_pred CCh-----------HHHHHHHHHhccC-CceEEEecCCC
Q 017460 265 GDT-----------GMITTALQSCCDG-WGLAVTLGVPK 291 (371)
Q Consensus 265 g~~-----------~~l~~~~~~l~~~-~G~~v~~g~~~ 291 (371)
+.. ......++.++.. -++++.+++..
T Consensus 76 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~ 114 (227)
T 3dhn_A 76 NPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG 114 (227)
T ss_dssp CC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence 753 1123344444442 14788887654
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.013 Score=53.39 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=53.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-----------HHHHHHcCCce---EeCCCCCCchHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-----------CEKAKAFGVTE---FLNPNDNNEPVQQVIK 250 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-----------~~~~~~lg~~~---vi~~~~~~~~~~~~v~ 250 (371)
.|+++||+|+ +++|.+.+..+...|+ +|++++++.++ .+.+++.|... ..|..+ .+.+.+.+.
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~ 121 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD-EQQISAAVE 121 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHH
Confidence 4789999986 8999999998888899 99999888764 23345555432 235542 233333333
Q ss_pred HHhC--CCccEEEEcCCC
Q 017460 251 RITD--GGADYSFECIGD 266 (371)
Q Consensus 251 ~~~~--gg~dvVid~~g~ 266 (371)
+... +++|++|++.|.
T Consensus 122 ~~~~~~g~iDilVnnAG~ 139 (346)
T 3kvo_A 122 KAIKKFGGIDILVNNASA 139 (346)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 3322 389999999884
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=50.26 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=68.2
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcC-----CCEEEEEcCChhhHHHHHH----cC-----C--ceEeCCCCCCchHH
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARG-----ASRIIGVDTNPEKCEKAKA----FG-----V--TEFLNPNDNNEPVQ 246 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G-----~~~vi~~~~~~~~~~~~~~----lg-----~--~~vi~~~~~~~~~~ 246 (371)
.++++++||.+|+|. |..++.+++..+ ..+|++++.+++..+.+++ .+ . ..++..+- ...+.
T Consensus 77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~ 154 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI-YQVNE 154 (227)
T ss_dssp TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG-GGCCH
T ss_pred hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh-Hhccc
Confidence 578899999999876 888888998876 1299999999988877754 23 1 12222110 01110
Q ss_pred HHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEec
Q 017460 247 QVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 247 ~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.. ...+.||+|+........++.+.+.|+++ |+++..-
T Consensus 155 ~~~--~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~ 193 (227)
T 2pbf_A 155 EEK--KELGLFDAIHVGASASELPEILVDLLAEN-GKLIIPI 193 (227)
T ss_dssp HHH--HHHCCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEE
T ss_pred ccC--ccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEE
Confidence 000 11247999998776655678889999997 9987653
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.014 Score=51.47 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=54.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-eE--eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-EF--LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++++.++.+.+ .+++.. .. .|..+ ...+...+.+... +++|
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id 81 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD-GERIDVVAADVLARYGRVD 81 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCS
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC-HHHHHHHHHHHHHhCCCCC
Confidence 4678999986 9999999999989999 999999998876665 444432 22 35441 2233333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|.+.|.
T Consensus 82 ~lv~~Ag~ 89 (281)
T 3m1a_A 82 VLVNNAGR 89 (281)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999874
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.016 Score=48.77 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=61.7
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+ .++..+ .|.. + ..+.+.+... ++|+||.+.+.
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~~~~~~D~~--d--~~~~~~~~~~-~~d~vi~~ag~ 73 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNVKAVHFDVD--W--TPEEMAKQLH-GMDAIINVSGS 73 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTEEEEECCTT--S--CHHHHHTTTT-TCSEEEECCCC
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCceEEEeccc--C--CHHHHHHHHc-CCCEEEECCcC
Confidence 6899986 9999999999988998 999999998765332 222211 2332 1 1334444443 79999999985
Q ss_pred hH---------HHHHHHHHhccC-CceEEEecCCCC
Q 017460 267 TG---------MITTALQSCCDG-WGLAVTLGVPKL 292 (371)
Q Consensus 267 ~~---------~l~~~~~~l~~~-~G~~v~~g~~~~ 292 (371)
.. .....++.+... .++++.+++...
T Consensus 74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~ 109 (219)
T 3dqp_A 74 GGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS 109 (219)
T ss_dssp TTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 31 123334444332 258888877544
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.023 Score=49.59 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=51.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
++.+|||+|+ |++|.+.+..+...|+ +|+++++ ++++.+.+ ++.+... ..|..+ ...+.+.+.+...
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4678999986 9999999999888999 8999888 66655433 3345432 235441 2233333333222
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 98 ~~~d~vi~~Ag 108 (274)
T 1ja9_A 98 GGLDFVMSNSG 108 (274)
T ss_dssp SCEEEEECCCC
T ss_pred CCCCEEEECCC
Confidence 37999999887
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.011 Score=50.47 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=67.5
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcCC-----ceEeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGV-----TEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~-----~~vi~~~~~~~~~~~~v~~~~ 253 (371)
+...+++|++||=+|+|+ |..+..+|+..|. .+|++++.+++..+.+++.-. ..+..... ... .. ...
T Consensus 71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~-~p~---~~-~~~ 144 (233)
T 4df3_A 71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDAR-FPE---KY-RHL 144 (233)
T ss_dssp SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTT-CGG---GG-TTT
T ss_pred hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEecc-Ccc---cc-ccc
Confidence 556799999999999875 7888889988875 489999999998887754321 22221110 110 00 111
Q ss_pred CCCccEEEEcCCChH----HHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFECIGDTG----MITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid~~g~~~----~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.+|+|+....-.. .+..+.+.|+++ |+++..
T Consensus 145 ~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~ 181 (233)
T 4df3_A 145 VEGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA 181 (233)
T ss_dssp CCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence 226898886554332 466777889997 998764
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.019 Score=49.42 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=52.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCC--ceE--eCCCCCC-chHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGV--TEF--LNPNDNN-EPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~--~~v--i~~~~~~-~~~~~~v~~~~~- 254 (371)
+++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+. ..+ ++....+ ..+...+.+...
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 91 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE 91 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence 5789999986 9999999999989999 999999998876654 33332 122 2331012 223333333222
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 92 ~g~id~lv~nAg~ 104 (247)
T 3i1j_A 92 FGRLDGLLHNASI 104 (247)
T ss_dssp HSCCSEEEECCCC
T ss_pred CCCCCEEEECCcc
Confidence 379999998874
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.015 Score=49.94 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=53.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-----cCCc-eE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGVT-EF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg~~-~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ .+.. .. .|..+ ...+.+.+.+...
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS-EESINKAFEEIYNLV 83 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC-HHHHHHHHHHHHHhc
Confidence 4678999986 9999999998888999 99999998877654422 3432 12 24431 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 84 ~~~d~vi~~Ag~ 95 (248)
T 2pnf_A 84 DGIDILVNNAGI 95 (248)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998873
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.012 Score=49.86 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=57.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.++++||+|+ +++|.+.++.+...|+ +|++++++.+ .|..+ .+...+.+.++ +++|+++.+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~-~~~v~~~~~~~--g~id~lv~nA 67 (223)
T 3uce_A 5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD-EKSVYHYFETI--GAFDHLIVTA 67 (223)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC-HHHHHHHHHHH--CSEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC-HHHHHHHHHHh--CCCCEEEECC
Confidence 4678999986 8999999988888899 9999987654 33331 22233333333 4789999888
Q ss_pred CCh--------------------------HHHHHHHHHhccCCceEEEecCCC
Q 017460 265 GDT--------------------------GMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 265 g~~--------------------------~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
|.. ...+.++..++++ |+++.+++..
T Consensus 68 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~~sS~~ 119 (223)
T 3uce_A 68 GSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG-GSITLTSGML 119 (223)
T ss_dssp CCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE-EEEEEECCGG
T ss_pred CCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC-eEEEEecchh
Confidence 732 0123333445565 8999987643
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.014 Score=51.18 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=53.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~--~g 255 (371)
.|+++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.|... . .|..+ .+...+.+.+.. .+
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS-ESEIIEAFARLDEQGI 102 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHCC
Confidence 4788999986 8999999999989999 999999998876544 3345432 2 24431 223333333332 23
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++.+.|.
T Consensus 103 ~iD~lv~nAg~ 113 (271)
T 4ibo_A 103 DVDILVNNAGI 113 (271)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0097 Score=51.41 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=50.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhC--CCccEEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD--GGADYSFE 262 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~--gg~dvVid 262 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. + ...|..+ .+.+.+.+.+... +++|++|.
T Consensus 14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~-~~~~~~~~~~~~~~~g~id~lv~ 87 (247)
T 1uzm_A 14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD-SDAVDRAFTAVEEHQGPVEVLVS 87 (247)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC-HHHHHHHHHHHHHHHSSCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC-HHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678999986 9999999998888999 9999988876543221 1 2345541 2233333333322 37899999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.|.
T Consensus 88 ~Ag~ 91 (247)
T 1uzm_A 88 NAGL 91 (247)
T ss_dssp ECSC
T ss_pred CCCC
Confidence 8874
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0066 Score=51.86 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=67.8
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC--c--eEeCCCCCCchHHHHHHHHhCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--T--EFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~--~vi~~~~~~~~~~~~v~~~~~g 255 (371)
+...++++++||-+|+|. |..+..+++..|..+|++++.+++..+.+++.-. . ..+..+ .... .... ...+
T Consensus 68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d--~~~~-~~~~-~~~~ 142 (230)
T 1fbn_A 68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGD--ANKP-QEYA-NIVE 142 (230)
T ss_dssp CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECC--TTCG-GGGT-TTSC
T ss_pred cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECC--CCCc-cccc-ccCc
Confidence 445678899999999886 8888899988874499999999998877754321 1 122111 1110 0000 0113
Q ss_pred CccEEEEcCCCh---H-HHHHHHHHhccCCceEEEe
Q 017460 256 GADYSFECIGDT---G-MITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 256 g~dvVid~~g~~---~-~l~~~~~~l~~~~G~~v~~ 287 (371)
.+|+|+..+... . .++.+.+.|+++ |+++..
T Consensus 143 ~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 177 (230)
T 1fbn_A 143 KVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence 799999665543 2 378888899997 998875
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.016 Score=52.44 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=66.3
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++..+ +.+.++|+.. . ++.+.+. ..|+|+.+++
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~-~-------~l~ell~-----~aDvV~l~~P 228 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQ-L-------PLEEIWP-----LCDFITVHTP 228 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEE-C-------CHHHHGG-----GCSEEEECCC
T ss_pred CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCcee-C-------CHHHHHh-----cCCEEEEecC
Confidence 57899999999999999999999999 99999988766 3567788742 1 1222221 5899999887
Q ss_pred ChH----HH-HHHHHHhccCCceEEEecCC
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g~~ 290 (371)
... .+ ...+..++++ +.++.++..
T Consensus 229 ~t~~t~~li~~~~l~~mk~g-ailIN~arg 257 (335)
T 2g76_A 229 LLPSTTGLLNDNTFAQCKKG-VRVVNCARG 257 (335)
T ss_dssp CCTTTTTSBCHHHHTTSCTT-EEEEECSCT
T ss_pred CCHHHHHhhCHHHHhhCCCC-cEEEECCCc
Confidence 542 12 4677888987 888888753
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.015 Score=50.75 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=53.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcC-Cc-e--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFG-VT-E--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg-~~-~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+ .. . ..|..+ ...+.+.+.+...
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD-RAQCDALAGRAVEEF 86 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence 4788999985 9999999999989999 999999998876554 2333 11 2 235441 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 87 g~id~lvnnAg~ 98 (262)
T 3pk0_A 87 GGIDVVCANAGV 98 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.017 Score=53.90 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred CEEEEEccChHHHHHHHHHHHcCC--CEEEEEcCChhhHHHH-HHcC------Cce-EeCCCCCCchHHHHHHHHhCC-C
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGA--SRIIGVDTNPEKCEKA-KAFG------VTE-FLNPNDNNEPVQQVIKRITDG-G 256 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~--~~vi~~~~~~~~~~~~-~~lg------~~~-vi~~~~~~~~~~~~v~~~~~g-g 256 (371)
.+|+|+|+|.+|..+++.+...|. .+|++.+++.++.+.+ ++++ +.. .+|.. + .+.+.++..+ +
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~--d---~~~l~~~l~~~~ 76 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDAD--S---IEELVALINEVK 76 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTT--C---HHHHHHHHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCC--C---HHHHHHHHHhhC
Confidence 378999999999999988887773 3899999999887665 3332 221 23433 2 2233333333 6
Q ss_pred ccEEEEcCCChHHHHHHHHHhccCCceEEEecC
Q 017460 257 ADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 257 ~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+|+||++++.......+-.++..+ -.++.+..
T Consensus 77 ~DvVin~ag~~~~~~v~~a~l~~g-~~vvD~a~ 108 (405)
T 4ina_A 77 PQIVLNIALPYQDLTIMEACLRTG-VPYLDTAN 108 (405)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHHT-CCEEESSC
T ss_pred CCEEEECCCcccChHHHHHHHHhC-CCEEEecC
Confidence 899999998654445555666665 56665543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.019 Score=50.29 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-eE--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-EF--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+.. .+ .|..+ .+.+.+.+.+... +
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAEIG 107 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC-HHHHHHHHHHHHHHCC
Confidence 4688999986 9999999999988999 999999988776543 333432 12 35441 2233333333321 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 108 ~iD~li~~Ag~ 118 (272)
T 1yb1_A 108 DVSILVNNAGV 118 (272)
T ss_dssp CCSEEEECCCC
T ss_pred CCcEEEECCCc
Confidence 79999999873
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.019 Score=49.91 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=53.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +++... . ..|..+ .+.+.+.+.+... +++|
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD 83 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGLH 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4688999986 9999999998888999 999999998876654 334321 1 235441 2333333333322 3799
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
++|++.|
T Consensus 84 ~lv~~Ag 90 (260)
T 1nff_A 84 VLVNNAG 90 (260)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999887
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.016 Score=50.77 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=53.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc---eEeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT---EFLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~---~vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+.. ...|..+ ...+...+.+... +
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND-ATAVDALVESTLKEFG 104 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC-HHHHHHHHHHHHHHcC
Confidence 4678999986 8999999998888999 999999998876544 333432 1235541 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 105 ~iD~lvnnAg~ 115 (270)
T 3ftp_A 105 ALNVLVNNAGI 115 (270)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.023 Score=49.24 Aligned_cols=78 Identities=23% Similarity=0.438 Sum_probs=52.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+.. . ..|..+ ...+.+.+.+... +
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN-TESVQNAVRSVHEQEG 89 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence 4788999986 9999999998888999 999999988765433 333432 1 235441 2233333333222 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 90 ~id~vi~~Ag 99 (260)
T 3awd_A 90 RVDILVACAG 99 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.016 Score=51.07 Aligned_cols=79 Identities=25% Similarity=0.412 Sum_probs=53.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCC---c-e--EeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGV---T-E--FLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~---~-~--vi~~~~~~~~~~~~v~~~~~ 254 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+. . . ..|..+ .....+.+.+...
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 87 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN-EDETARAVDAVTA 87 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC-HHHHHHHHHHHHH
Confidence 4789999985 9999999998888999 999999998876543 33443 1 1 135441 2333333333322
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 88 ~~g~id~lv~nAg~ 101 (281)
T 3svt_A 88 WHGRLHGVVHCAGG 101 (281)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCc
Confidence 379999999884
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.048 Score=48.97 Aligned_cols=92 Identities=23% Similarity=0.251 Sum_probs=64.3
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCC-EEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+|.|+|.|.+|.+.+..++..|.. +|++.++++++.+.++++|+. ...... ..+ .+ .++|+||-|+.
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~---~~~--~~-----~~aDvVilavp 103 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI---AKV--ED-----FSPDFVMLSSP 103 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCT---TGG--GG-----GCCSEEEECSC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCH---HHH--hh-----ccCCEEEEeCC
Confidence 6899999999999999988888863 799999999999999988873 222211 110 01 26899999998
Q ss_pred ChH---HHHHHHHHhccCCceEEEecCC
Q 017460 266 DTG---MITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 266 ~~~---~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
... .++.....++++ ..++.+++.
T Consensus 104 ~~~~~~vl~~l~~~l~~~-~iv~d~~Sv 130 (314)
T 3ggo_A 104 VRTFREIAKKLSYILSED-ATVTDQGSV 130 (314)
T ss_dssp GGGHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred HHHHHHHHHHHhhccCCC-cEEEECCCC
Confidence 643 233444456664 566666554
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.013 Score=51.70 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=52.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-H---HcCC---c-e--EeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-K---AFGV---T-E--FLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~---~lg~---~-~--vi~~~~~~~~~~~~v~~~~~ 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ + +.+. . . ..|..+ .+.+.+.+.+...
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK 82 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC-HHHHHHHHHHHHH
Confidence 4678999986 8999999998888999 999999998876554 2 2232 1 1 235541 2233333333322
Q ss_pred --CCccEEEEcCC
Q 017460 255 --GGADYSFECIG 265 (371)
Q Consensus 255 --gg~dvVid~~g 265 (371)
+++|++|++.|
T Consensus 83 ~~g~iD~lv~nAg 95 (280)
T 1xkq_A 83 QFGKIDVLVNNAG 95 (280)
T ss_dssp HHSCCCEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 37999999887
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.016 Score=53.17 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=65.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCE-EEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASR-IIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~-vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.|.+|.|+|.|.+|...++.++..|+ + |++.+++..+.+.+.++|+..+ .++.+.+. ..|+|+.++
T Consensus 163 ~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvV~l~~ 229 (364)
T 2j6i_A 163 EGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV-------ENIEELVA-----QADIVTVNA 229 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC-------SSHHHHHH-----TCSEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec-------CCHHHHHh-----cCCEEEECC
Confidence 57899999999999999999999999 6 9999988877777777776421 12322222 578998888
Q ss_pred CChH----HH-HHHHHHhccCCceEEEecC
Q 017460 265 GDTG----MI-TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 265 g~~~----~l-~~~~~~l~~~~G~~v~~g~ 289 (371)
.... .+ ...+..++++ ..+|.++.
T Consensus 230 P~t~~t~~li~~~~l~~mk~g-a~lIn~ar 258 (364)
T 2j6i_A 230 PLHAGTKGLINKELLSKFKKG-AWLVNTAR 258 (364)
T ss_dssp CCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred CCChHHHHHhCHHHHhhCCCC-CEEEECCC
Confidence 7531 22 3566778886 77777764
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.02 Score=50.46 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=52.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-Hc---CCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AF---GVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~l---g~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. ++ +... . .|..+ .......+..... +
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGD-EALHEALVELAVRRFG 84 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4788999986 8999999998888999 9999999988766552 32 3322 2 24431 2223333333222 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|++.|
T Consensus 85 ~iD~lvnnAg 94 (280)
T 3tox_A 85 GLDTAFNNAG 94 (280)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999987
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.032 Score=48.91 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=52.1
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
...+.++||+|+|+++.+++..+...|+++|+++.|+.+|.+.+ ++++.. ..+. . . ...+|+||+
T Consensus 116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~~~~---~-~---------~~~~DivIn 181 (271)
T 1npy_A 116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YINS---L-E---------NQQADILVN 181 (271)
T ss_dssp CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EESC---C-T---------TCCCSEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-cchh---h-h---------cccCCEEEE
Confidence 34567899999999999999989899987899999998886554 566652 1111 0 0 026899999
Q ss_pred cCCCh
Q 017460 263 CIGDT 267 (371)
Q Consensus 263 ~~g~~ 267 (371)
+++..
T Consensus 182 aTp~g 186 (271)
T 1npy_A 182 VTSIG 186 (271)
T ss_dssp CSSTT
T ss_pred CCCCC
Confidence 99853
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.037 Score=50.26 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=62.3
Q ss_pred CEEEEEccChHHHHHHHHHH-Hc-CCCEE-EEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEE
Q 017460 188 STVVIFGLGTVGLSVAQGAK-AR-GASRI-IGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 262 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~-~~-G~~~v-i~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid 262 (371)
-+|.|+|+|.+|...++.++ .. ++ ++ .+.++++++.+.+ +++|+..+++ ++ .++... ++|+|+.
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~-~~vav~d~~~~~~~~~a~~~g~~~~~~------~~----~~~l~~~~~D~V~i 77 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGV-KLVAACALDSNQLEWAKNELGVETTYT------NY----KDMIDTENIDAIFI 77 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSE-EEEEEECSCHHHHHHHHHTTCCSEEES------CH----HHHHTTSCCSEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHHhCCCcccC------CH----HHHhcCCCCCEEEE
Confidence 47899999999998877776 43 67 54 4567888877554 6678754442 22 233334 7999999
Q ss_pred cCCChHHHHHHHHHhccCCceEEEec
Q 017460 263 CIGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 263 ~~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+++...+.+.+..+++. |+-+.+.
T Consensus 78 ~tp~~~h~~~~~~al~~--G~~v~~e 101 (346)
T 3cea_A 78 VAPTPFHPEMTIYAMNA--GLNVFCE 101 (346)
T ss_dssp CSCGGGHHHHHHHHHHT--TCEEEEC
T ss_pred eCChHhHHHHHHHHHHC--CCEEEEc
Confidence 99987778888888886 5555564
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.013 Score=51.77 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=63.3
Q ss_pred EEEEEcc-ChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+|||+|+ |.+|...++.+... |. +|+++++++++...+...++..+ .|.. + .+.+.+... ++|+||.+.+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~--d---~~~l~~~~~-~~d~vi~~a~ 74 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYF--N---QESMVEAFK-GMDTVVFIPS 74 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTT--C---HHHHHHHTT-TCSEEEECCC
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCC--C---HHHHHHHHh-CCCEEEEeCC
Confidence 5899996 99999998888777 88 89999999887655544455433 2443 2 233444433 7999999987
Q ss_pred Ch-------HHHHHHHHHhccC-CceEEEecCCC
Q 017460 266 DT-------GMITTALQSCCDG-WGLAVTLGVPK 291 (371)
Q Consensus 266 ~~-------~~l~~~~~~l~~~-~G~~v~~g~~~ 291 (371)
.. ......++.++.. -++++.+++..
T Consensus 75 ~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~ 108 (289)
T 3e48_A 75 IIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA 108 (289)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred CCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 42 1233445555443 14788877654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.024 Score=49.09 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=51.9
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--CC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+.. . ..|..+ .+.+.+.+.+... ++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence 468999986 8999999999988999 999999998776543 223432 1 235541 2233333333222 37
Q ss_pred ccEEEEcCC
Q 017460 257 ADYSFECIG 265 (371)
Q Consensus 257 ~dvVid~~g 265 (371)
+|++|++.|
T Consensus 80 id~lv~nAg 88 (256)
T 1geg_A 80 FDVIVNNAG 88 (256)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 999999887
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.022 Score=50.31 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc---CCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---GVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l---g~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
++.++||+|+ +++|.+.+..+...|+ +|++++++.++.+.+ +++ +... ..|..+ .......+.+... +
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD-ELQMRNAVRDLVLKFG 104 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4688999986 8999999998888999 999999998876654 222 3321 235441 2233333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 105 ~iD~lVnnAg~ 115 (283)
T 3v8b_A 105 HLDIVVANAGI 115 (283)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.038 Score=47.69 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=50.3
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
-++.++||+|+ |++|.+.+..+...|+ +|++++++++. +++++...++ |. ..+....+.... ++|++|+
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~~D~---~~~~~~~~~~~~--~iD~lv~ 87 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDL---RKDLDLLFEKVK--EVDILVL 87 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCT---TTCHHHHHHHSC--CCSEEEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---HHhhCCeEEEeeH---HHHHHHHHHHhc--CCCEEEE
Confidence 45789999986 9999999998888999 99999998744 3444532333 32 123333333322 7999999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.|.
T Consensus 88 ~Ag~ 91 (249)
T 1o5i_A 88 NAGG 91 (249)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9873
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.081 Score=41.75 Aligned_cols=94 Identities=7% Similarity=0.106 Sum_probs=59.4
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC-hhhHHHHH---HcCCceEe-CCCCCCchHHHHHHHHhCCCccEEE
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN-PEKCEKAK---AFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~-~~~~~~~~---~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
.++|+|+|+|.+|...++.+...|. .|++++++ +++.+.++ ..|...+. |.. + .+.+.+..-.++|+|+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~--~---~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIPGDSN--D---SSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEESCTT--S---HHHHHHHTTTTCSEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCeEEEcCCC--C---HHHHHHcChhhCCEEE
Confidence 4679999999999999999999998 89999997 46555543 23554333 222 2 2233333223799999
Q ss_pred EcCCChHH---HHHHHHHhccCCceEEEe
Q 017460 262 ECIGDTGM---ITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 262 d~~g~~~~---l~~~~~~l~~~~G~~v~~ 287 (371)
-++++... +....+.+.+. .+++..
T Consensus 77 ~~~~~d~~n~~~~~~a~~~~~~-~~ii~~ 104 (153)
T 1id1_A 77 ALSDNDADNAFVVLSAKDMSSD-VKTVLA 104 (153)
T ss_dssp ECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred EecCChHHHHHHHHHHHHHCCC-CEEEEE
Confidence 99987532 22233344343 455553
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.012 Score=53.30 Aligned_cols=89 Identities=17% Similarity=0.315 Sum_probs=63.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.++++.+.+.+.++|+.. .++.+.+. ..|+|+-++.
T Consensus 144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~--------~~l~ell~-----~aDvV~l~~P 209 (330)
T 4e5n_A 144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQ--------VACSELFA-----SSDFILLALP 209 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEE--------CCHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCcee--------CCHHHHHh-----hCCEEEEcCC
Confidence 47899999999999999999999999 9999999876666666677531 12333332 3688888776
Q ss_pred ChH----HH-HHHHHHhccCCceEEEecC
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g~ 289 (371)
... .+ ...+..++++ ..+|.++-
T Consensus 210 ~t~~t~~li~~~~l~~mk~g-ailIN~ar 237 (330)
T 4e5n_A 210 LNADTLHLVNAELLALVRPG-ALLVNPCR 237 (330)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred CCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence 321 12 3566778876 77777753
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.022 Score=50.06 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=53.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HH----cCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA----FGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~----lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ +++|.+.++.+...|+ +|++++++.++.+.+ ++ .|... ..|..+ .......+.+...
T Consensus 26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA-PPAVMAAVDQALKEF 103 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999986 8999999999888999 999999998765443 22 34322 235541 2333333333322
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+++|++|++.|
T Consensus 104 g~id~lv~nAg 114 (277)
T 4fc7_A 104 GRIDILINCAA 114 (277)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 37999999987
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.017 Score=51.06 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=52.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-----------HHHHHHcCCce---EeCCCCCCchHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-----------CEKAKAFGVTE---FLNPNDNNEPVQQVIK 250 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-----------~~~~~~lg~~~---vi~~~~~~~~~~~~v~ 250 (371)
.+.++||+|+ +++|.+.+..+...|+ +|++++++.++ .+.+++.+... ..|..+ .+...+.+.
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~ 85 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD-GDAVAAAVA 85 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS-HHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHH
Confidence 4789999986 8999999998888899 99999988762 22334445432 225541 233333333
Q ss_pred HHhC--CCccEEEEcCCC
Q 017460 251 RITD--GGADYSFECIGD 266 (371)
Q Consensus 251 ~~~~--gg~dvVid~~g~ 266 (371)
+... +++|++|.+.|.
T Consensus 86 ~~~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHHHSCCSEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 3322 379999999874
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.02 Score=52.23 Aligned_cols=90 Identities=21% Similarity=0.176 Sum_probs=65.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.++++.+.+.++++|+..+ .++.+.+. ..|+|+-++.
T Consensus 163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvV~l~~P 229 (351)
T 3jtm_A 163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV-------EDLNEMLP-----KCDVIVINMP 229 (351)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC-------SCHHHHGG-----GCSEEEECSC
T ss_pred cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc-------CCHHHHHh-----cCCEEEECCC
Confidence 57899999999999999999999999 99999988777777777776422 12222221 4788888776
Q ss_pred Ch-H---H-HHHHHHHhccCCceEEEecC
Q 017460 266 DT-G---M-ITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 266 ~~-~---~-l~~~~~~l~~~~G~~v~~g~ 289 (371)
.. . . -...+..++++ ..+|.++-
T Consensus 230 lt~~t~~li~~~~l~~mk~g-ailIN~aR 257 (351)
T 3jtm_A 230 LTEKTRGMFNKELIGKLKKG-VLIVNNAR 257 (351)
T ss_dssp CCTTTTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred CCHHHHHhhcHHHHhcCCCC-CEEEECcC
Confidence 32 1 1 24667788886 77777753
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.029 Score=49.35 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC------------hhhHHH----HHHcCCce---EeCCCCCCchH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEK----AKAFGVTE---FLNPNDNNEPV 245 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~------------~~~~~~----~~~lg~~~---vi~~~~~~~~~ 245 (371)
.++++||+|+ |++|.+.++.+...|+ +|++++++ .++.+. +++.|... ..|..+ .+..
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v 86 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKD-RAAL 86 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHH
Confidence 4789999985 8999999999999999 89999886 333322 34445432 235541 2233
Q ss_pred HHHHHHHhC--CCccEEEEcCCC
Q 017460 246 QQVIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 246 ~~~v~~~~~--gg~dvVid~~g~ 266 (371)
.+.+.+... +++|++|++.|.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~ 109 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGI 109 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 333333322 379999998873
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.02 Score=50.57 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=51.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC---ceEeCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV---TEFLNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~---~~vi~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
.+.+++|+|+|++|.+++..+...|+++|+++.|+.++.+.+ ++++. ..+.+.. + +. .++|+||
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~----~-------l~-~~aDiII 192 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE----Q-------LK-QSYDVII 192 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG----G-------CC-SCEEEEE
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH----H-------hc-CCCCEEE
Confidence 578999999999999999888889977999999999886655 44442 1233221 1 11 3799999
Q ss_pred EcCCCh
Q 017460 262 ECIGDT 267 (371)
Q Consensus 262 d~~g~~ 267 (371)
++++..
T Consensus 193 naTp~g 198 (281)
T 3o8q_A 193 NSTSAS 198 (281)
T ss_dssp ECSCCC
T ss_pred EcCcCC
Confidence 999753
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.045 Score=48.34 Aligned_cols=73 Identities=22% Similarity=0.334 Sum_probs=53.8
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.. . .+..+.+. ..|+||-++..+.
T Consensus 3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~------~~~~~~~~-----~advvi~~v~~~~ 69 (287)
T 3pdu_A 3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQ-A------SSPAEVCA-----ACDITIAMLADPA 69 (287)
T ss_dssp CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEE-C------SCHHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c------CCHHHHHH-----cCCEEEEEcCCHH
Confidence 58899999999988888877898 8999999999998888777642 1 12223332 3688888888754
Q ss_pred HHHHHH
Q 017460 269 MITTAL 274 (371)
Q Consensus 269 ~l~~~~ 274 (371)
.++..+
T Consensus 70 ~~~~v~ 75 (287)
T 3pdu_A 70 AAREVC 75 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455544
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.055 Score=47.42 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=62.8
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
.+|||+|+|.+|...+..+...|+ +|+++++++.+.+.+...++..+. |.. + + . -.++|+||.+.+.
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~--d--~----~---~~~~d~vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGE--E--P----S---LDGVTHLLISTAP 73 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSSS--C--C----C---CTTCCEEEECCCC
T ss_pred CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEeccc--c--c----c---cCCCCEEEECCCc
Confidence 579999999999999999988899 999999999988888777765432 443 2 1 1 2389999999864
Q ss_pred h----HHHHHHHHHhcc---CCceEEEecC
Q 017460 267 T----GMITTALQSCCD---GWGLAVTLGV 289 (371)
Q Consensus 267 ~----~~l~~~~~~l~~---~~G~~v~~g~ 289 (371)
. ......++.++. +-.+++.+++
T Consensus 74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss 103 (286)
T 3ius_A 74 DSGGDPVLAALGDQIAARAAQFRWVGYLST 103 (286)
T ss_dssp BTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred cccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence 2 122333444332 1157777654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.013 Score=53.65 Aligned_cols=48 Identities=23% Similarity=0.384 Sum_probs=41.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHH-HHHcCCc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK-AKAFGVT 233 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~lg~~ 233 (371)
-+|.+|+|.|.|.+|..+++.+...|+ +|++.+++.++.+. ++++|+.
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~ 219 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD 219 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence 468999999999999999999999999 89999999888764 4567764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0023 Score=55.52 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=67.3
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~ 252 (371)
....++++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++ .|.. .++... ..++ .
T Consensus 30 ~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d--~~~~------~ 99 (256)
T 1nkv_A 30 RVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND--AAGY------V 99 (256)
T ss_dssp HHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC--CTTC------C
T ss_pred HhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECC--hHhC------C
Confidence 556788999999999876 7788889988888 99999999988777744 3432 122111 1111 0
Q ss_pred hCCCccEEEEcC------CChHHHHHHHHHhccCCceEEEec
Q 017460 253 TDGGADYSFECI------GDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 253 ~~gg~dvVid~~------g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
..+.||+|+... .-...++.+.+.|+++ |+++...
T Consensus 100 ~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~ 140 (256)
T 1nkv_A 100 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE 140 (256)
T ss_dssp CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence 124799998622 1234578888899997 9988753
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.032 Score=49.03 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=53.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC-CCccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD-GGADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~-gg~dv 259 (371)
++.++||+|+ +++|.+.++.+...|+ +|++++++.++.+.+ ++++... ..|..+ .+.+.+.+..... +++|+
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~id~ 106 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS-EDSVLAAIEAANQLGRLRY 106 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHTTSSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCe
Confidence 4678999986 8999999998888999 999999999887665 4455432 235541 2334444444421 27899
Q ss_pred EEEc
Q 017460 260 SFEC 263 (371)
Q Consensus 260 Vid~ 263 (371)
+|.+
T Consensus 107 lv~~ 110 (281)
T 3ppi_A 107 AVVA 110 (281)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9987
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=96.06 E-value=0.068 Score=47.14 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=50.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh-hhHHHH-H----HcCCce---EeCCCCC---CchHHHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCEKA-K----AFGVTE---FLNPNDN---NEPVQQVIKRI 252 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~-~~~~~~-~----~lg~~~---vi~~~~~---~~~~~~~v~~~ 252 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++ ++.+.+ + +.+... ..|..+. ...+...+.+.
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~ 100 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC 100 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence 3678999986 9999999998888899 999998887 655433 2 334321 2344410 12222222222
Q ss_pred hC--CCccEEEEcCC
Q 017460 253 TD--GGADYSFECIG 265 (371)
Q Consensus 253 ~~--gg~dvVid~~g 265 (371)
.. +++|++|.+.|
T Consensus 101 ~~~~g~iD~lvnnAG 115 (288)
T 2x9g_A 101 FRAFGRCDVLVNNAS 115 (288)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhcCCCCEEEECCC
Confidence 21 37999999887
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.027 Score=51.36 Aligned_cols=88 Identities=24% Similarity=0.260 Sum_probs=63.5
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++. +.+.+.+.|+.. + .++.+.+. ..|+|+-++.
T Consensus 159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~-~------~~l~ell~-----~aDiV~l~~P 224 (352)
T 3gg9_A 159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAV-A------ESKDALFE-----QSDVLSVHLR 224 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEE-C------SSHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceE-e------CCHHHHHh-----hCCEEEEecc
Confidence 47899999999999999999999999 999998875 445566777642 1 12333333 3688888775
Q ss_pred ChH----H-HHHHHHHhccCCceEEEec
Q 017460 266 DTG----M-ITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~----~-l~~~~~~l~~~~G~~v~~g 288 (371)
... . -...+..++++ ..+|.++
T Consensus 225 lt~~t~~li~~~~l~~mk~g-ailIN~a 251 (352)
T 3gg9_A 225 LNDETRSIITVADLTRMKPT-ALFVNTS 251 (352)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred CcHHHHHhhCHHHHhhCCCC-cEEEECC
Confidence 321 1 23567778886 8888876
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.023 Score=47.54 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=67.4
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhCCCccE
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
..+.++.+||-+|+|. |..+..+++. |. +|++++.++...+.+++.+... ++..+ ..++ ...+.+|+
T Consensus 42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d--~~~~------~~~~~~D~ 110 (218)
T 3ou2_A 42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQD--LFDW------TPDRQWDA 110 (218)
T ss_dssp TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECC--TTSC------CCSSCEEE
T ss_pred hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEecc--cccC------CCCCceeE
Confidence 3477888999999875 7777777776 77 9999999999999998866322 22211 1111 12348999
Q ss_pred EEEcCCC--------hHHHHHHHHHhccCCceEEEecCC
Q 017460 260 SFECIGD--------TGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 260 Vid~~g~--------~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
|+....- ...++.+.+.|+++ |.++.....
T Consensus 111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~ 148 (218)
T 3ou2_A 111 VFFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT 148 (218)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence 9864421 23578888899997 998877543
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.012 Score=51.20 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=52.5
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcC---CCEEEEEcCChhhHHHHHHc---CCc-eE--eCCCCCCchHHHHHHHH--
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARG---ASRIIGVDTNPEKCEKAKAF---GVT-EF--LNPNDNNEPVQQVIKRI-- 252 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G---~~~vi~~~~~~~~~~~~~~l---g~~-~v--i~~~~~~~~~~~~v~~~-- 252 (371)
.++.++||+|+ |++|.+.+..+...| + +|++++++.++.+.++++ +.. .+ .|..+ .+.+.+.+.+.
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~ 96 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEG 96 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC-hHHHHHHHHHHHH
Confidence 34678999986 999999999888889 7 999999987755444332 322 22 35442 23344333333
Q ss_pred -hCC-CccEEEEcCCC
Q 017460 253 -TDG-GADYSFECIGD 266 (371)
Q Consensus 253 -~~g-g~dvVid~~g~ 266 (371)
.+. ++|++|.+.|.
T Consensus 97 ~~g~~~id~li~~Ag~ 112 (267)
T 1sny_A 97 VTKDQGLNVLFNNAGI 112 (267)
T ss_dssp HHGGGCCSEEEECCCC
T ss_pred hcCCCCccEEEECCCc
Confidence 333 69999999873
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.021 Score=49.13 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=52.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.+.++||+|+ |++|.+.++.+...|+ +|+++++ ++++.+.+ ++.+... ..|..+ ...+.+.+.+...
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN-AEDVTNMVKQTVDVF 80 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 3678999986 9999999999988999 9999888 77665443 3334322 235441 2333333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 81 g~id~lv~nAg~ 92 (246)
T 2uvd_A 81 GQVDILVNNAGV 92 (246)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.029 Score=49.22 Aligned_cols=79 Identities=27% Similarity=0.299 Sum_probs=51.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC------------hhhHHHH----HHcCCce---EeCCCCCCchH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEKA----KAFGVTE---FLNPNDNNEPV 245 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~------------~~~~~~~----~~lg~~~---vi~~~~~~~~~ 245 (371)
.|+++||+|+ +++|.+.+..+...|+ +|++++++ .++.+.+ ++.+... ..|..+ ...+
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v 89 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD-RESL 89 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHH
Confidence 4789999986 8999999998889999 99999876 4443332 3344432 235441 2333
Q ss_pred HHHHHHHhC--CCccEEEEcCCC
Q 017460 246 QQVIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 246 ~~~v~~~~~--gg~dvVid~~g~ 266 (371)
.+.+.+... +++|++|.+.|.
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~ 112 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGI 112 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 333333322 379999999874
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.031 Score=49.72 Aligned_cols=78 Identities=23% Similarity=0.300 Sum_probs=51.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC------------hhhHHH----HHHcCCce---EeCCCCCCchH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEK----AKAFGVTE---FLNPNDNNEPV 245 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~------------~~~~~~----~~~lg~~~---vi~~~~~~~~~ 245 (371)
.++++||+|+ +++|.+.+..+...|+ +|++++++ .++.+. +++.|... ..|..+ ....
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v 104 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD-FDAM 104 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHH
Confidence 4789999986 8999999999889999 99998876 444333 34455432 235541 2333
Q ss_pred HHHHHHHhC--CCccEEEEcCC
Q 017460 246 QQVIKRITD--GGADYSFECIG 265 (371)
Q Consensus 246 ~~~v~~~~~--gg~dvVid~~g 265 (371)
.+.+.+... +++|++|.+.|
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 333333322 37999999887
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.02 Score=46.75 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=66.8
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCC-c--eEeCCCCCCchHHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGV-T--EFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~-~--~vi~~~~~~~~~~~~v~~~ 252 (371)
....+.++++||.+|+|. |..+..+++.. . +|++++.+++..+.+++ .+. . .++.. ++.+. +
T Consensus 27 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~~---~ 95 (192)
T 1l3i_A 27 CLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-----DAPEA---L 95 (192)
T ss_dssp HHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-----CHHHH---H
T ss_pred HhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-----CHHHh---c
Confidence 445678899999999876 88888887766 5 99999999988877754 443 1 12221 23222 2
Q ss_pred hC-CCccEEEEcCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 253 TD-GGADYSFECIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 253 ~~-gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.. +.+|+|+..... ...++.+.+.|+++ |.++...
T Consensus 96 ~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~ 134 (192)
T 1l3i_A 96 CKIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA 134 (192)
T ss_dssp TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred ccCCCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence 22 379999975441 34577888889997 9887753
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.025 Score=49.62 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=50.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-eE--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-EF--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+.. .. .|..+ ...+.+.+..... +
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g 110 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD-PKSVEETISQQEKDFG 110 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC-HHHHHHHHHHHHHHhC
Confidence 4688999986 8999998888888899 999998887654433 233432 12 34441 2233333333222 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
.+|++|.+.|
T Consensus 111 ~id~li~~Ag 120 (279)
T 3ctm_A 111 TIDVFVANAG 120 (279)
T ss_dssp CCSEEEECGG
T ss_pred CCCEEEECCc
Confidence 6999999876
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.023 Score=50.31 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.5
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.+|+|+|+|++|-.++..+...|..++..++.+.
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 57899999999999999999899998999998765
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.026 Score=49.25 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=53.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----H-cCCc--eE--eCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----A-FGVT--EF--LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~-lg~~--~v--i~~~~~~~~~~~~v~~~~~- 254 (371)
.++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. + .+.. .. .|..+ .......+.+...
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD-ALQVRAFAEACERT 84 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC-HHHHHHHHHHHHHH
Confidence 4788999985 8999999999888999 9999999988765542 2 3322 12 35541 2233333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|+++++.|.
T Consensus 85 ~g~id~lvnnAg~ 97 (265)
T 3lf2_A 85 LGCASILVNNAGQ 97 (265)
T ss_dssp HCSCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 379999999874
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.025 Score=49.57 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH-HHc----CCce-E--eCCCCCC----chHHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA-KAF----GVTE-F--LNPNDNN----EPVQQVIKR 251 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~-~~l----g~~~-v--i~~~~~~----~~~~~~v~~ 251 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++ ++++.+.+ +++ +... . .|..+ . ..+...+.+
T Consensus 10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 87 (276)
T 1mxh_A 10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL-SSSLLDCCEDIIDC 87 (276)
T ss_dssp -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-STTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC-ccccHHHHHHHHHH
Confidence 4678999985 9999999998888999 9999998 87765544 222 4321 2 35542 2 233333333
Q ss_pred HhC--CCccEEEEcCC
Q 017460 252 ITD--GGADYSFECIG 265 (371)
Q Consensus 252 ~~~--gg~dvVid~~g 265 (371)
... +++|++|.+.|
T Consensus 88 ~~~~~g~id~lv~nAg 103 (276)
T 1mxh_A 88 SFRAFGRCDVLVNNAS 103 (276)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHhcCCCCEEEECCC
Confidence 222 37999999987
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.027 Score=50.01 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc----CCc-eE--eCCCCCCchHHHHHHHHh--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----GVT-EF--LNPNDNNEPVQQVIKRIT--D 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g~~-~v--i~~~~~~~~~~~~v~~~~--~ 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ +++ +.. .+ .|..+ .+.+.+.+.... -
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIKVA 102 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHHHc
Confidence 4688999986 9999999999888999 999999998776543 222 432 12 35441 233333333332 2
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+.+|++|.+.|
T Consensus 103 g~id~li~~Ag 113 (302)
T 1w6u_A 103 GHPNIVINNAA 113 (302)
T ss_dssp CSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37899999987
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.02 Score=49.73 Aligned_cols=78 Identities=14% Similarity=0.300 Sum_probs=52.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+... ..|..+ .+++...+.+... +
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 90 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK-AEDRERLVAMAVNLHG 90 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4788999986 9999999999888999 999999998766543 2334321 234431 2233333333222 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|++.|
T Consensus 91 ~iD~lv~~Ag 100 (260)
T 2zat_A 91 GVDILVSNAA 100 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.022 Score=49.49 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
+++++||+|+ |++|.+.+..+...|+ +|+++ .+++++.+.+ ++.+... . .|..+ .....+.+.+...
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ-PAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5788999985 9999999999989999 88776 7887765544 3344432 2 35441 2233333333322
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 81 g~id~lv~nAg 91 (258)
T 3oid_A 81 GRLDVFVNNAA 91 (258)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37999999987
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.009 Score=51.60 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=52.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh--hhHHHHHHcCCce---EeCCCCCCchHHHHHHHHhC-CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP--EKCEKAKAFGVTE---FLNPNDNNEPVQQVIKRITD-GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~lg~~~---vi~~~~~~~~~~~~v~~~~~-gg~d 258 (371)
+|+++||+|+ +++|++.++.+...|+ +|++++++. +..+.+++.|... ..|..+ +. .++.... +++|
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d--~~---~v~~~~~~g~iD 81 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD--PL---AAKDSFTDAGFD 81 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS--TT---TTTTSSTTTCCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC--HH---HHHHHHHhCCCC
Confidence 4888999985 8999999999999999 999998875 3455667777543 234432 11 1222222 4899
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++++.|.
T Consensus 82 iLVNNAGi 89 (247)
T 4hp8_A 82 ILVNNAGI 89 (247)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.014 Score=51.37 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=67.9
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHHc-----CCc--eEeCCCCCCchHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAF-----GVT--EFLNPNDNNEPVQQVI 249 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~l-----g~~--~vi~~~~~~~~~~~~v 249 (371)
.....++++++||-+|+| .|..+..+++.. +. +|++++.+++..+.+++. |.. .++..+ +.+
T Consensus 103 ~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d-----~~~-- 173 (275)
T 1yb2_A 103 IMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD-----IAD-- 173 (275)
T ss_dssp ---CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC-----TTT--
T ss_pred HHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECc-----hhc--
Confidence 355678899999999987 477778888774 45 999999999988877543 532 222221 111
Q ss_pred HHHhCCCccEEEEcCCCh-HHHHHHHHHhccCCceEEEecC
Q 017460 250 KRITDGGADYSFECIGDT-GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 250 ~~~~~gg~dvVid~~g~~-~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+..+.+|+|+-..... ..++.+.+.|+++ |+++....
T Consensus 174 -~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 212 (275)
T 1yb2_A 174 -FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP 212 (275)
T ss_dssp -CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred -cCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 11223799998766543 4688899999997 99887653
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.018 Score=51.18 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=53.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc---CC--ce--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF---GV--TE--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l---g~--~~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +++ +. .. ..|..+ .+...+.+.+...
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 117 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD-PGSCADAARTVVDAF 117 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC-HHHHHHHHHHHHHHc
Confidence 4788999986 8999999999989999 999999998876554 332 31 11 235541 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 118 g~iD~lvnnAg~ 129 (293)
T 3rih_A 118 GALDVVCANAGI 129 (293)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998873
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.03 Score=53.20 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=59.6
Q ss_pred CCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHH-cCCce-EeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKA-FGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~-lg~~~-vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+.+|+|+|+|.+|.+++..+... |+ +|++++++.++.+.+.+ .+... .+|.. + . +.+.+... ++|+||++
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~--d--~-~~l~~~l~-~~DvVIn~ 95 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVT--D--D-SALDKVLA-DNDVVISL 95 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTT--C--H-HHHHHHHH-TSSEEEEC
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecC--C--H-HHHHHHHc-CCCEEEEC
Confidence 46899999999999988888777 67 89999999988776643 34432 23432 1 1 12222222 69999999
Q ss_pred CCChHHHHHHHHHhccCCceEEEe
Q 017460 264 IGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 264 ~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
++..........+++.+ -.++..
T Consensus 96 tp~~~~~~v~~a~l~~g-~~vvd~ 118 (467)
T 2axq_A 96 IPYTFHPNVVKSAIRTK-TDVVTS 118 (467)
T ss_dssp SCGGGHHHHHHHHHHHT-CEEEEC
T ss_pred CchhhhHHHHHHHHhcC-CEEEEe
Confidence 98642222333455554 445444
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.033 Score=49.51 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=52.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HH--------cCCc-eE--eCCCCCCchHHHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KA--------FGVT-EF--LNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~--------lg~~-~v--i~~~~~~~~~~~~v~~~ 252 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++++.++.+.+ ++ .+.. .. .|..+ ...+...+...
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~ 94 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVKST 94 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC-HHHHHHHHHHH
Confidence 4688999986 9999999998888999 999999998776543 22 2322 12 34431 22333333332
Q ss_pred hC--CCccEEEEcCC
Q 017460 253 TD--GGADYSFECIG 265 (371)
Q Consensus 253 ~~--gg~dvVid~~g 265 (371)
.. +++|++|.+.|
T Consensus 95 ~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 95 LDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 22 37999999987
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0066 Score=51.67 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=66.1
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCC------CEEEEEcCChhhHHHHHHc----C-------CceEeCCCCCCchH
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGA------SRIIGVDTNPEKCEKAKAF----G-------VTEFLNPNDNNEPV 245 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~------~~vi~~~~~~~~~~~~~~l----g-------~~~vi~~~~~~~~~ 245 (371)
.++++++||.+|+|. |..++.+++..|. .+|++++.+++..+.+++. + ...++..+ .
T Consensus 81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-----~ 154 (227)
T 1r18_A 81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD-----G 154 (227)
T ss_dssp TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC-----G
T ss_pred hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECC-----c
Confidence 578899999999886 8888888887662 3899999999887776542 2 11222111 1
Q ss_pred HHHHHHHhC-CCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 246 QQVIKRITD-GGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 246 ~~~v~~~~~-gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+ .+.. +.||+|+.........+.+.+.|+++ |+++..
T Consensus 155 ~~---~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~ 193 (227)
T 1r18_A 155 RK---GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP 193 (227)
T ss_dssp GG---CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred cc---CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEE
Confidence 11 1122 37999998776655678889999997 998764
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0073 Score=49.48 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=65.2
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc--eEeCCCCCCchHHHHHHHHhC
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT--EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~--~vi~~~~~~~~~~~~v~~~~~ 254 (371)
...++++++||-+|+|. |..+..+++. +. +|++++.+++..+.+++ .|.. .++... ... +....+
T Consensus 17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~--~~~----l~~~~~ 87 (185)
T 3mti_A 17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDG--HEN----LDHYVR 87 (185)
T ss_dssp HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESC--GGG----GGGTCC
T ss_pred HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCc--HHH----HHhhcc
Confidence 34678899999999875 7777888877 76 99999999998777643 3432 222211 111 112233
Q ss_pred CCccEEEEcCCC-----------h----HHHHHHHHHhccCCceEEEecC
Q 017460 255 GGADYSFECIGD-----------T----GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 255 gg~dvVid~~g~-----------~----~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+.||+|+-..+. . ..++.+.+.|+++ |+++....
T Consensus 88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 136 (185)
T 3mti_A 88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY 136 (185)
T ss_dssp SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 479999765321 1 2357788899997 99887643
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.021 Score=49.68 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=52.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHH---HhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKR---ITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~---~~~ 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+... ..|..+ ...+.+.+.+ ..+
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSMFG 90 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 4678999986 9999999999988999 999999988766543 2334321 224431 1222222222 222
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 91 ~~id~li~~Ag~ 102 (266)
T 1xq1_A 91 GKLDILINNLGA 102 (266)
T ss_dssp TCCSEEEEECCC
T ss_pred CCCcEEEECCCC
Confidence 589999998874
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=95.99 E-value=0.034 Score=50.68 Aligned_cols=91 Identities=19% Similarity=0.319 Sum_probs=64.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHH-HcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAK-ARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~-~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
-.|.+|.|+|.|.+|...++.++ ..|. +|++.+++.++.+.+.++|+..+ . ++.+.+. ..|+|+.+
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~----~l~ell~-----~aDvVil~ 227 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV---D----SLEELAR-----RSDCVSVS 227 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC---S----SHHHHHH-----HCSEEEEC
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe---C----CHHHHhc-----cCCEEEEe
Confidence 35789999999999999999999 9999 99999998877766766776421 1 2323232 37899988
Q ss_pred CCChH----HH-HHHHHHhccCCceEEEecC
Q 017460 264 IGDTG----MI-TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 264 ~g~~~----~l-~~~~~~l~~~~G~~v~~g~ 289 (371)
+.... .+ ...+..++++ ..++.++.
T Consensus 228 vp~~~~t~~li~~~~l~~mk~g-ailin~sr 257 (348)
T 2w2k_A 228 VPYMKLTHHLIDEAFFAAMKPG-SRIVNTAR 257 (348)
T ss_dssp CCCSGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred CCCChHHHHHhhHHHHhcCCCC-CEEEECCC
Confidence 86532 12 3566778875 66666653
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.027 Score=46.60 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=59.8
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+|||+|+ |.+|...++.+...|. +|+++++++++.......++..+ .|.. + .+.+.+... ++|+||.+.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~--~---~~~~~~~~~-~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVL--Q---AADVDKTVA-GQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTT--S---HHHHHHHHT-TCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCceEEEEecCC--C---HHHHHHHHc-CCCEEEECcc
Confidence 68999986 9999999999988898 99999998876432211223222 2333 2 223444333 6899999987
Q ss_pred ChH----------HHHHHHHHhcc-CCceEEEecCC
Q 017460 266 DTG----------MITTALQSCCD-GWGLAVTLGVP 290 (371)
Q Consensus 266 ~~~----------~l~~~~~~l~~-~~G~~v~~g~~ 290 (371)
... .....++.+.. +.++++.+++.
T Consensus 77 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 432 12333333332 22578887654
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.025 Score=53.31 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCCCCEEEEEccChHHHHHHHHHH-HcCC--CEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAK-ARGA--SRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~-~~G~--~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
+.-..+|||+|+|++|..++.++. ..+. ..|++++..+.+++..+.+|.... ...+ ..+..+.+..+..++ |+
T Consensus 10 ~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vd--adnv~~~l~aLl~~~-Dv 86 (480)
T 2ph5_A 10 ILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQIT--PQNYLEVIGSTLEEN-DF 86 (480)
T ss_dssp BCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCC--TTTHHHHTGGGCCTT-CE
T ss_pred ecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEecc--chhHHHHHHHHhcCC-CE
Confidence 444578999999999999988775 4455 368888877776666666775322 2332 445556566565545 99
Q ss_pred EEEcCCChHHHHHHHHHhccCCceEEEecC
Q 017460 260 SFECIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 260 Vid~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
||+++-....+..+-.|++.+ -.++....
T Consensus 87 VIN~s~~~~~l~Im~acleaG-v~YlDTa~ 115 (480)
T 2ph5_A 87 LIDVSIGISSLALIILCNQKG-ALYINAAT 115 (480)
T ss_dssp EEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred EEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence 999886655566666777776 77777764
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.029 Score=50.81 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=63.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|. +|++.+++.++.+.+.++|+... ++.+.+. ..|+|+.++.
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~l~e~l~-----~aDvVi~~vp 219 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV--------STPELAA-----QSDFIVVACS 219 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC--------CHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC--------CHHHHHh-----hCCEEEEeCC
Confidence 47799999999999999999999999 89999988776666666665321 2222222 4789999886
Q ss_pred ChH----HH-HHHHHHhccCCceEEEecC
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g~ 289 (371)
... .+ ...+..++++ ..++.++.
T Consensus 220 ~~~~t~~~i~~~~~~~mk~g-ailIn~sr 247 (330)
T 2gcg_A 220 LTPATEGLCNKDFFQKMKET-AVFINISR 247 (330)
T ss_dssp CCTTTTTCBSHHHHHHSCTT-CEEEECSC
T ss_pred CChHHHHhhCHHHHhcCCCC-cEEEECCC
Confidence 431 22 3556778875 66666643
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.03 Score=46.41 Aligned_cols=62 Identities=16% Similarity=0.387 Sum_probs=43.3
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
++||+|+ |.+|...++.+. .|+ +|++++++++ ....|..+ .+.+.+.+... +++|++|.+.|
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~-~~~~~~~~~~~--~~~d~vi~~ag 67 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN-IDSIKKMYEQV--GKVDAIVSATG 67 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC-HHHHHHHHHHH--CCEEEEEECCC
T ss_pred EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC-HHHHHHHHHHh--CCCCEEEECCC
Confidence 7999986 999999988888 899 9999988764 12334441 22233333333 47899999887
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=95.95 E-value=0.022 Score=49.79 Aligned_cols=78 Identities=15% Similarity=0.289 Sum_probs=51.0
Q ss_pred CCCEEEEEc---cChHHHHHHHHHHHcCCCEEEEEcCChhh-HHHH-HHcCCc---eEeCCCCCCchHHHHHHHH---hC
Q 017460 186 KGSTVVIFG---LGTVGLSVAQGAKARGASRIIGVDTNPEK-CEKA-KAFGVT---EFLNPNDNNEPVQQVIKRI---TD 254 (371)
Q Consensus 186 ~~~~VlI~G---ag~~G~~ai~la~~~G~~~vi~~~~~~~~-~~~~-~~lg~~---~vi~~~~~~~~~~~~v~~~---~~ 254 (371)
+++++||+| +|++|.+.+..+...|+ +|+++++++++ .+.+ ++++.. ...|..+ .+.+.+.+.+. .+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN-EEHLASLAGRVTEAIG 83 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC-HHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 468899997 47999999998888999 99999888765 2333 444432 1235541 22233333322 22
Q ss_pred --CCccEEEEcCC
Q 017460 255 --GGADYSFECIG 265 (371)
Q Consensus 255 --gg~dvVid~~g 265 (371)
+++|++|++.|
T Consensus 84 ~~~~iD~lv~nAg 96 (269)
T 2h7i_A 84 AGNKLDGVVHSIG 96 (269)
T ss_dssp TTCCEEEEEECCC
T ss_pred CCCCceEEEECCc
Confidence 17999999887
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.03 Score=49.04 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=62.8
Q ss_pred hcchhhhhHHhHhhhhcCC-CCCCEEEEEccC-hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVADI-SKGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~-~~~~~VlI~Gag-~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||....+...+ +...+ -.|.+++|+|.| .+|..++.++...|+ .|+++.+...
T Consensus 140 ~~PcTp~gv~~lL-~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~--------------------- 196 (285)
T 3l07_A 140 LESCTPKGIMTML-REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFTT--------------------- 196 (285)
T ss_dssp CCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCS---------------------
T ss_pred CCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch---------------------
Confidence 4444444444444 33333 478999999975 589999999999999 8888754321
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
++.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|..
T Consensus 197 ~L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 235 (285)
T 3l07_A 197 DLKSHTT-----KADILIVAVGKPNFITA--DMVKEG-AVVIDVGIN 235 (285)
T ss_dssp SHHHHHT-----TCSEEEECCCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred hHHHhcc-----cCCEEEECCCCCCCCCH--HHcCCC-cEEEEeccc
Confidence 2222222 58999999997654332 456776 778888754
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.047 Score=47.11 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=65.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh---
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT--- 253 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~--- 253 (371)
...++.+||-+|+| .|..++.+++.+ +. +|++++.+++..+.+++ .|...-+... ..+..+.+..+.
T Consensus 76 ~~~~~~~VLeiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~--~gda~~~l~~l~~~~ 151 (247)
T 1sui_A 76 KLINAKNTMEIGVY-TGYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFR--EGPALPVLDEMIKDE 151 (247)
T ss_dssp HHTTCCEEEEECCG-GGHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEE--ESCHHHHHHHHHHSG
T ss_pred HhhCcCEEEEeCCC-cCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEE--ECCHHHHHHHHHhcc
Confidence 34567899999876 377788888876 55 99999999998877754 4542111111 122333333332
Q ss_pred --CCCccEEEEcCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 254 --DGGADYSFECIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 --~gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.||+||--... ...++.+.+.|+++ |.++.-.
T Consensus 152 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~ 190 (247)
T 1sui_A 152 KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN 190 (247)
T ss_dssp GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEEC
T ss_pred CCCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEec
Confidence 3489998753322 23577889999998 9987643
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.096 Score=46.72 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+.. . .+..+.+. ..|+||-++..
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~------~~~~e~~~-----~aDvVi~~vp~ 75 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHL-C------ESVKAALS-----ASPATIFVLLD 75 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEE-C------SSHHHHHH-----HSSEEEECCSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-c------CCHHHHHh-----cCCEEEEEeCC
Confidence 4579999999999999888888998 8999999999999888777632 1 12333333 37999999987
Q ss_pred hHHHHHHHH-----HhccCCceEEEecCC
Q 017460 267 TGMITTALQ-----SCCDGWGLAVTLGVP 290 (371)
Q Consensus 267 ~~~l~~~~~-----~l~~~~G~~v~~g~~ 290 (371)
+..++..+. .+.++ ..++.++..
T Consensus 76 ~~~~~~v~~~~~l~~~~~g-~ivid~st~ 103 (306)
T 3l6d_A 76 NHATHEVLGMPGVARALAH-RTIVDYTTN 103 (306)
T ss_dssp HHHHHHHHTSTTHHHHTTT-CEEEECCCC
T ss_pred HHHHHHHhcccchhhccCC-CEEEECCCC
Confidence 654554432 34454 555556543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.045 Score=48.15 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC-
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~- 254 (371)
..+.++||+|+ |++|.+.+..+...|+ +|+++++ ++++.+.+ ++.|... ..|..+ .+...+.+.+...
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD-LSSHQATVDAVVAE 104 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS-GGGHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHH
Confidence 35788999986 8999999999989999 8988875 55554433 3344432 235542 3344444443322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 379999999875
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.015 Score=49.97 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=53.3
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcC--CCEEEEEcCChhhHHHHHHc-CCc-e--EeCCCCCCchHHHHHHH---HhCC-
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARG--ASRIIGVDTNPEKCEKAKAF-GVT-E--FLNPNDNNEPVQQVIKR---ITDG- 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G--~~~vi~~~~~~~~~~~~~~l-g~~-~--vi~~~~~~~~~~~~v~~---~~~g- 255 (371)
+.++||+|+ |++|.+.+..+...| + +|+++++++++.+.++++ +.. . ..|..+ ...+.+.+.+ ..+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~~ 80 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGSD 80 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGGG
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCC-HHHHHHHHHHHHHhcCCC
Confidence 578999986 999999999988899 7 999999998887777665 222 1 234441 2223333332 2222
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 81 ~id~li~~Ag~ 91 (250)
T 1yo6_A 81 GLSLLINNAGV 91 (250)
T ss_dssp CCCEEEECCCC
T ss_pred CCcEEEECCcc
Confidence 69999998863
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.029 Score=48.66 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=50.9
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh--HHHH-HH---cCCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKA-KA---FGVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~--~~~~-~~---lg~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++++||+|+ |++|.+.+..+...|+ +|+++++++++ .+.+ ++ .+... . .|..+ .+.+.+.+.+...
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD-KANFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 578999986 8999999888888899 99999888776 4332 22 24321 2 35441 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 80 g~iD~lv~nAg~ 91 (258)
T 3a28_C 80 GGFDVLVNNAGI 91 (258)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998873
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=95.92 E-value=0.019 Score=50.72 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=50.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc--eE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT--EF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~--~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++.+.. .+ .|..+ .....+.+.+...
T Consensus 27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~ 104 (286)
T 1xu9_A 27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED-MTFAEQFVAQAGKLM 104 (286)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC-HHHHHHHHHHHHHHc
Confidence 3678999986 9999999998888999 999999998876654 233432 12 34441 1223333332221
Q ss_pred CCccEEEEc
Q 017460 255 GGADYSFEC 263 (371)
Q Consensus 255 gg~dvVid~ 263 (371)
+++|++|.+
T Consensus 105 g~iD~li~n 113 (286)
T 1xu9_A 105 GGLDMLILN 113 (286)
T ss_dssp TSCSEEEEC
T ss_pred CCCCEEEEC
Confidence 379999988
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.069 Score=46.83 Aligned_cols=86 Identities=24% Similarity=0.381 Sum_probs=59.8
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
+|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+++.|.. .+... . .+. .++|+||-++...
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~------~----~~~--~~~D~vi~av~~~ 68 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQD------L----SLL--QTAKIIFLCTPIQ 68 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESC------G----GGG--TTCSEEEECSCHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccCC------H----HHh--CCCCEEEEECCHH
Confidence 68899999999999888888898 999999999998888888763 22211 1 111 2689999999864
Q ss_pred HHHHHHHHH----hccCCceEEEecC
Q 017460 268 GMITTALQS----CCDGWGLAVTLGV 289 (371)
Q Consensus 268 ~~l~~~~~~----l~~~~G~~v~~g~ 289 (371)
.....++. ++++ ..++.++.
T Consensus 69 -~~~~~~~~l~~~~~~~-~~vv~~~~ 92 (279)
T 2f1k_A 69 -LILPTLEKLIPHLSPT-AIVTDVAS 92 (279)
T ss_dssp -HHHHHHHHHGGGSCTT-CEEEECCS
T ss_pred -HHHHHHHHHHhhCCCC-CEEEECCC
Confidence 34444433 4443 45555533
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.035 Score=48.67 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=50.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH---cCCce---EeCCCCCCchHHHHHHHHh--CCC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA---FGVTE---FLNPNDNNEPVQQVIKRIT--DGG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~---lg~~~---vi~~~~~~~~~~~~v~~~~--~gg 256 (371)
.|.++||+|+ |++|.+.++.+...|+ +|+++++++...+.+++ .+... ..|.. +.+-.+.+.+.. .++
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~--d~~~v~~~~~~~~~~g~ 106 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLA--DLEGAANVAEELAATRR 106 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTT--CHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCC--CHHHHHHHHHHHHhcCC
Confidence 4789999986 8999999998889999 89999876544444433 34321 23544 333222222221 148
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|.+.|.
T Consensus 107 iD~lv~nAg~ 116 (273)
T 3uf0_A 107 VDVLVNNAGI 116 (273)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCCC
Confidence 9999998874
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.031 Score=49.34 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=63.3
Q ss_pred hcchhhhhHHhHhhhhcCCCCCCEEEEEccC-hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCch
Q 017460 166 LLSCGLSAGLGAAWNVADISKGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 244 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag-~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~ 244 (371)
.+||....++..+.+..---.|.+++|+|.| .+|..++.++...|+ .|+++.+....++
T Consensus 144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~------------------- 203 (300)
T 4a26_A 144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTED------------------- 203 (300)
T ss_dssp CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHH-------------------
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCch-------------------
Confidence 3444444445444222223479999999975 589999999999999 8888876332221
Q ss_pred HHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 245 VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 245 ~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+.+.++ .+|+||.++|.+..+.. ..++++ ..++.+|..
T Consensus 204 l~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 241 (300)
T 4a26_A 204 MIDYLR-----TADIVIAAMGQPGYVKG--EWIKEG-AAVVDVGTT 241 (300)
T ss_dssp HHHHHH-----TCSEEEECSCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred hhhhhc-----cCCEEEECCCCCCCCcH--HhcCCC-cEEEEEecc
Confidence 002222 57999999997654332 346876 788888754
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.032 Score=50.23 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=64.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT-NPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.++ +.++ ..++++|+.. . .++.+.+. ..|+|+-++
T Consensus 145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~-~------~~l~ell~-----~aDvVil~~ 210 (320)
T 1gdh_A 145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF-H------DSLDSLLS-----VSQFFSLNA 210 (320)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE-C------SSHHHHHH-----HCSEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE-c------CCHHHHHh-----hCCEEEEec
Confidence 57899999999999999999999999 9999998 7766 3566677642 1 12323222 478999888
Q ss_pred CChH----HH-HHHHHHhccCCceEEEecC
Q 017460 265 GDTG----MI-TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 265 g~~~----~l-~~~~~~l~~~~G~~v~~g~ 289 (371)
.... .+ ...+..++++ ..++.++.
T Consensus 211 p~~~~t~~~i~~~~l~~mk~g-ailIn~ar 239 (320)
T 1gdh_A 211 PSTPETRYFFNKATIKSLPQG-AIVVNTAR 239 (320)
T ss_dssp CCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred cCchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence 7432 12 3466778886 77877765
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.081 Score=47.36 Aligned_cols=88 Identities=18% Similarity=0.316 Sum_probs=61.7
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.. +. .+..+.+. .+|+||.++..+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~------~~~~~~~~-----~~DvVi~av~~~ 97 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGAR-LG------RTPAEVVS-----TCDITFACVSDP 97 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCE-EC------SCHHHHHH-----HCSEEEECCSSH
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCE-Ec------CCHHHHHh-----cCCEEEEeCCCH
Confidence 579999999999998888888898 899999999998888777753 21 12222222 479999999865
Q ss_pred HHHHHHHH-------HhccCCceEEEecC
Q 017460 268 GMITTALQ-------SCCDGWGLAVTLGV 289 (371)
Q Consensus 268 ~~l~~~~~-------~l~~~~G~~v~~g~ 289 (371)
..++..+. .+.++ ..++.++.
T Consensus 98 ~~~~~v~~~~~~~~~~l~~~-~~vv~~s~ 125 (316)
T 2uyy_A 98 KAAKDLVLGPSGVLQGIRPG-KCYVDMST 125 (316)
T ss_dssp HHHHHHHHSTTCGGGGCCTT-CEEEECSC
T ss_pred HHHHHHHcCchhHhhcCCCC-CEEEECCC
Confidence 55555553 24454 45555543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.13 Score=45.38 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=36.5
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
.+|.|+|+|.+|...++.+...|+ +|++.++++++.+.+++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 45 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK 45 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence 579999999999999999989999 99999999998777654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.027 Score=50.06 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=52.5
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCC-c-e--EeCCCCCC-chHHHHHHHHhC
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGV-T-E--FLNPNDNN-EPVQQVIKRITD 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~-~-~--vi~~~~~~-~~~~~~v~~~~~ 254 (371)
..+.++||+|+ |++|.+.+..+...|+ +|++++++.++.+.+ ++.+. . . ..|..+ . ......+..+..
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD-PIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS-CHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC-cHHHHHHHHHHHHH
Confidence 35788999986 8999999988888999 999999998875543 22232 1 1 235542 2 222222232222
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 88 ~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 88 HFGKLDILVNNAGV 101 (311)
T ss_dssp HHSSCCEEEECCCC
T ss_pred hCCCCCEEEECCcc
Confidence 379999999984
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.035 Score=49.70 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=67.6
Q ss_pred hhcC-CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHH
Q 017460 180 NVAD-ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 180 ~~~~-~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~ 251 (371)
+... ++++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++ .|.. .++..+ ..++ .
T Consensus 110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~-----~ 180 (312)
T 3vc1_A 110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN--MLDT-----P 180 (312)
T ss_dssp TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC--TTSC-----C
T ss_pred HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC--hhcC-----C
Confidence 4444 78899999999875 7777888887788 99999999998877754 4432 222111 1110 0
Q ss_pred HhCCCccEEEEcC-----CChHHHHHHHHHhccCCceEEEec
Q 017460 252 ITDGGADYSFECI-----GDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 252 ~~~gg~dvVid~~-----g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+..+.||+|+... +-...++.+.+.|+++ |+++...
T Consensus 181 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 221 (312)
T 3vc1_A 181 FDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTIT 221 (312)
T ss_dssp CCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEE
Confidence 1224899998632 2234688899999998 9998764
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.022 Score=52.75 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=63.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++..+.+.++++|+... .++.+.+ ...|+|+.++.
T Consensus 190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~-------~~l~ell-----~~aDvV~l~~P 256 (393)
T 2nac_A 190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH-------ATREDMY-----PVCDVVTLNCP 256 (393)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC-------SSHHHHG-----GGCSEEEECSC
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec-------CCHHHHH-----hcCCEEEEecC
Confidence 57899999999999999999999999 99999988776667777776421 1122211 14788888776
Q ss_pred ChH----HH-HHHHHHhccCCceEEEecC
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g~ 289 (371)
... .+ ...+..++++ ..+|.++.
T Consensus 257 lt~~t~~li~~~~l~~mk~g-ailIN~aR 284 (393)
T 2nac_A 257 LHPETEHMINDETLKLFKRG-AYIVNTAR 284 (393)
T ss_dssp CCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred CchHHHHHhhHHHHhhCCCC-CEEEECCC
Confidence 321 12 4566777776 77777753
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.049 Score=45.90 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=55.0
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|+|+|+|.+|...++.+...|. .|+++++++++.+.+. .+|...+. |.. + .+.+.+..-.++|+|+-++++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~~i~gd~~--~---~~~l~~a~i~~ad~vi~~~~~ 75 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKATIIHGDGS--H---KEILRDAEVSKNDVVVILTPR 75 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSEEEESCTT--S---HHHHHHHTCCTTCEEEECCSC
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCeEEEcCCC--C---HHHHHhcCcccCCEEEEecCC
Confidence 58899999999999999999999 9999999999988764 46765443 322 2 223333322389999999987
Q ss_pred hH
Q 017460 267 TG 268 (371)
Q Consensus 267 ~~ 268 (371)
..
T Consensus 76 d~ 77 (218)
T 3l4b_C 76 DE 77 (218)
T ss_dssp HH
T ss_pred cH
Confidence 54
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.034 Score=48.68 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=62.9
Q ss_pred hcchhhhhHHhHhhhhcC-CCCCCEEEEEccC-hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVAD-ISKGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~-~~~~~~VlI~Gag-~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||....+...+ +... --.|.+++|+|.| .+|..++.++...|+ .|+++.+...
T Consensus 139 ~~PcTp~gv~~lL-~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t~--------------------- 195 (285)
T 3p2o_A 139 FLPCTPLGVMKLL-KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTK--------------------- 195 (285)
T ss_dssp CCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCS---------------------
T ss_pred CCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCch---------------------
Confidence 3444444444444 3333 3479999999975 589999999999999 8888865321
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
++.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|..
T Consensus 196 ~L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDVgi~ 234 (285)
T 3p2o_A 196 DLSLYTR-----QADLIIVAAGCVNLLRS--DMVKEG-VIVVDVGIN 234 (285)
T ss_dssp CHHHHHT-----TCSEEEECSSCTTCBCG--GGSCTT-EEEEECCCE
T ss_pred hHHHHhh-----cCCEEEECCCCCCcCCH--HHcCCC-eEEEEeccC
Confidence 2222222 58999999997644332 456776 778888764
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.03 Score=48.95 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=51.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC-hhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~-~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++.++ ++..+.+ ++.+... + .|..+ .....+.+.+...
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 105 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAAS-ESDFIEAIQTIVQSD 105 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhc
Confidence 4788999986 8999999988888999 89998884 4433332 3445432 2 24431 2333333433322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 106 g~id~li~nAg~ 117 (271)
T 4iin_A 106 GGLSYLVNNAGV 117 (271)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.026 Score=49.14 Aligned_cols=93 Identities=13% Similarity=0.233 Sum_probs=63.9
Q ss_pred hcchhhhhHHhHhhhhcCCCCCCEEEEEccC-hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCch
Q 017460 166 LLSCGLSAGLGAAWNVADISKGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEP 244 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag-~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~ 244 (371)
.+||........+ +..+ -.|.+++|+|.| .+|..++.++...|+ .|+++.+.. .+
T Consensus 131 ~~PcTp~gv~~lL-~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t---------------------~~ 186 (276)
T 3ngx_A 131 LVPATPRAVIDIM-DYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKT---------------------KD 186 (276)
T ss_dssp SCCHHHHHHHHHH-HHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------SC
T ss_pred CCCCcHHHHHHHH-HHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCc---------------------cc
Confidence 3454444445544 3344 679999999975 699999999999999 888886532 23
Q ss_pred HHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 245 VQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 245 ~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+.+.++ .+|+||.++|.+..+.. ..++++ ..++.+|..
T Consensus 187 L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 224 (276)
T 3ngx_A 187 IGSMTR-----SSKIVVVAVGRPGFLNR--EMVTPG-SVVIDVGIN 224 (276)
T ss_dssp HHHHHH-----HSSEEEECSSCTTCBCG--GGCCTT-CEEEECCCE
T ss_pred HHHhhc-----cCCEEEECCCCCccccH--hhccCC-cEEEEeccC
Confidence 333443 37999999997654332 346776 777888754
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.071 Score=45.50 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
.++++.+||-+|+|. |..+..+++. |+ +|++++.+++..+.+++. . .++.. +..+.+..+..+.||+|+.
T Consensus 38 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~-~-~~~~~-----d~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 38 YFKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK-F-NVVKS-----DAIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp GTTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT-S-EEECS-----CHHHHHHTSCTTCBSEEEE
T ss_pred hhcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh-c-ceeec-----cHHHHhhhcCCCCeeEEEE
Confidence 467789999998764 4555566655 88 899999999999998876 2 23322 2333332333458999986
Q ss_pred cC-----CC---hHHHHHHHHHhccCCceEEEec
Q 017460 263 CI-----GD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 263 ~~-----g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.. .. ...++.+.+.|+++ |.++...
T Consensus 108 ~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 140 (240)
T 3dli_A 108 SHFVEHLDPERLFELLSLCYSKMKYS-SYIVIES 140 (240)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEE
T ss_pred CCchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEe
Confidence 32 21 24578888999998 9987653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.016 Score=49.01 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=66.3
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHhC
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~~ 254 (371)
...++.+||-+|+|. |..++.+++.++ ..+|++++.+++..+.+++ .|.. .++. .+..+.+..+..
T Consensus 61 ~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~~ 134 (225)
T 3tr6_A 61 KLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL-----SPAKDTLAELIH 134 (225)
T ss_dssp HHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-----SCHHHHHHHHHT
T ss_pred HhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe-----CCHHHHHHHhhh
Confidence 445778999999875 778888888763 3499999999988877754 3543 1222 233334444332
Q ss_pred ----CCccEEEEcCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 255 ----GGADYSFECIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 255 ----gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.||+|+-.... ...++.+.+.|+++ |.++.-.
T Consensus 135 ~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~ 174 (225)
T 3tr6_A 135 AGQAWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDN 174 (225)
T ss_dssp TTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred ccCCCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeC
Confidence 479999844332 23477888999997 9988653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.019 Score=48.78 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=67.7
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC----ceEeCCCCCCchHHHHHHHHhCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV----TEFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~----~~vi~~~~~~~~~~~~v~~~~~g 255 (371)
+...+.++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++... ..++..+ ..+.. ...+
T Consensus 64 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d-----~~~~~--~~~~ 133 (231)
T 1vbf_A 64 DELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGD-----GTLGY--EEEK 133 (231)
T ss_dssp HHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESC-----GGGCC--GGGC
T ss_pred HhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECC-----ccccc--ccCC
Confidence 556778899999999886 77888888764 5 99999999998888865421 1222221 11100 0124
Q ss_pred CccEEEEcCCChHHHHHHHHHhccCCceEEEecC
Q 017460 256 GADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 256 g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.||+|+....-....+.+.+.|+++ |+++..-.
T Consensus 134 ~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~ 166 (231)
T 1vbf_A 134 PYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIG 166 (231)
T ss_dssp CEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred CccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEc
Confidence 7999997765444456788899997 99877643
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.028 Score=49.59 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=52.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHh--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--DG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~--~g 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++.+++++.+.+ ++.+... . .|..+ .+.+.+.+.+.. .+
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTEHK 120 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC-HHHHHHHHHHHHHhcC
Confidence 3678999986 9999999988888899 899988887765543 2234432 2 35441 233333333332 23
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 121 ~id~li~~Ag~ 131 (285)
T 2c07_A 121 NVDILVNNAGI 131 (285)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.023 Score=49.02 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=52.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~--g 255 (371)
.+.++||+|+ |++|...+..+...|+ +|+++++++++.+.+ ++.+... . .|..+ ...+.+.+.+... +
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 4688999986 9999999998888899 999999998765543 2334321 2 34441 2233333332221 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|++|.+.|.
T Consensus 88 ~~d~vi~~Ag~ 98 (255)
T 1fmc_A 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.02 Score=48.39 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHh
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~ 253 (371)
...++.+||-+|+| .|..++.+++.+ +. +|++++.+++..+.+++ .|.. .++. .+..+.+..+.
T Consensus 55 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~ 127 (223)
T 3duw_A 55 QIQGARNILEIGTL-GGYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRT-----GLALDSLQQIE 127 (223)
T ss_dssp HHHTCSEEEEECCT-TSHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-----SCHHHHHHHHH
T ss_pred HhhCCCEEEEecCC-ccHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-----cCHHHHHHHHH
Confidence 45678899999987 477788888877 45 99999999988877643 4542 2222 22333333332
Q ss_pred C---CCccEEEEcCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 254 D---GGADYSFECIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~---gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
. +.||+|+-.... ...++.+.+.|+++ |.++.-.
T Consensus 128 ~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~ 167 (223)
T 3duw_A 128 NEKYEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDN 167 (223)
T ss_dssp HTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEES
T ss_pred hcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeC
Confidence 2 369999844322 23577888999997 9777653
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.042 Score=48.43 Aligned_cols=79 Identities=23% Similarity=0.274 Sum_probs=51.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC----------------hhhHHHH----HHcCCce---EeCCCCC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN----------------PEKCEKA----KAFGVTE---FLNPNDN 241 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~----------------~~~~~~~----~~lg~~~---vi~~~~~ 241 (371)
.++++||+|+ +++|.+.+..+...|+ +|++++++ .++.+.+ ++.+... ..|..+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~- 87 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD- 87 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC-
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC-
Confidence 4789999986 8999999999989999 99998776 4444333 2334322 235541
Q ss_pred CchHHHHHHHHhC--CCccEEEEcCCC
Q 017460 242 NEPVQQVIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 242 ~~~~~~~v~~~~~--gg~dvVid~~g~ 266 (371)
.+...+.+.+... +++|++|++.|.
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg~ 114 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAGI 114 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 2333333333322 379999998873
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.055 Score=46.91 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHh---C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRIT---D 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~---~ 254 (371)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+... ..|..+ ...+...+.... .
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ-ESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence 4678999985 9999999999988999 999999988776543 2224321 235441 233333333332 3
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+.+|++|++.|
T Consensus 82 g~id~lvnnAg 92 (260)
T 2qq5_A 82 GRLDVLVNNAY 92 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCceEEEECCc
Confidence 58999999984
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.03 Score=48.08 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=51.6
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc----CCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----GVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ +++ +.. . ..|..+ ...+.+.+.+... +
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD-EGDVNAAIAATMEQFG 79 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence 568999986 9999999998888999 999999998776554 222 322 1 234441 2233333333322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 80 ~id~li~~Ag 89 (250)
T 2cfc_A 80 AIDVLVNNAG 89 (250)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999886
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.034 Score=48.69 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=51.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++.+ +.++.+.+ ++.+... ..|..+ .+...+.+.+...
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~ 104 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ-ESEVEALFAAVIERW 104 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4788999986 8999999999889999 8888777 55544433 3344432 235541 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 105 g~id~lv~nAg~ 116 (269)
T 4dmm_A 105 GRLDVLVNNAGI 116 (269)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998874
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.03 Score=49.38 Aligned_cols=95 Identities=14% Similarity=0.238 Sum_probs=64.1
Q ss_pred hcchhhhhHHhHhhhhcCC-CCCCEEEEEccC-hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVADI-SKGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~-~~~~~VlI~Gag-~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||........+ +...+ -.|.+++|+|+| .+|.-++.++...|+ +|+++.+.. .
T Consensus 144 ~~PcTp~gi~~ll-~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t---------------------~ 200 (301)
T 1a4i_A 144 FIPCTPKGCLELI-KETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT---------------------A 200 (301)
T ss_dssp CCCHHHHHHHHHH-HTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------S
T ss_pred ccCchHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCc---------------------c
Confidence 4454444444433 33343 468999999987 689999999999999 888885432 2
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
++.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|...
T Consensus 201 ~L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDVgi~~ 240 (301)
T 1a4i_A 201 HLDEEVN-----KGDILVVATGQPEMVKG--EWIKPG-AIVIDCGINY 240 (301)
T ss_dssp SHHHHHT-----TCSEEEECCCCTTCBCG--GGSCTT-CEEEECCCBC
T ss_pred cHHHHhc-----cCCEEEECCCCcccCCH--HHcCCC-cEEEEccCCC
Confidence 2333332 58999999998754332 346786 8888888653
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.045 Score=51.74 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=54.4
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceE--eCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEF--LNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~v--i~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+.+|+|+|+|.+|.+.+..+...|+ +|++++++.++.+.+. +++.... .|.. + . +.+.++.. ++|+|+++
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~--d--~-~~l~~~l~-~~DvVIn~ 75 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVN--D--D-AALDAEVA-KHDLVISL 75 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTT--C--H-HHHHHHHT-TSSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecC--C--H-HHHHHHHc-CCcEEEEC
Confidence 5689999999999999888888898 8999999988766553 3432122 2332 1 1 22333332 79999999
Q ss_pred CCChHHHHHHHHHhcc
Q 017460 264 IGDTGMITTALQSCCD 279 (371)
Q Consensus 264 ~g~~~~l~~~~~~l~~ 279 (371)
++..........++..
T Consensus 76 a~~~~~~~i~~a~l~~ 91 (450)
T 1ff9_A 76 IPYTFHATVIKSAIRQ 91 (450)
T ss_dssp CC--CHHHHHHHHHHH
T ss_pred CccccchHHHHHHHhC
Confidence 9853222223344444
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.024 Score=49.54 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=51.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHc--CCc-e--EeCCCCCCchHHHHHHHHhCC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAF--GVT-E--FLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~l--g~~-~--vi~~~~~~~~~~~~v~~~~~g 255 (371)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++. +.. . ..|.. +....+.+.+.. +
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~-g 84 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLG--TEQGCQDVIEKY-P 84 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTT--SHHHHHHHHHHC-C
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCC--CHHHHHHHHHhc-C
Confidence 4788999986 8999999998888999 999999998775543 222 221 1 22443 333223332221 4
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++++.|.
T Consensus 85 ~id~lv~nAg~ 95 (267)
T 3t4x_A 85 KVDILINNLGI 95 (267)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.037 Score=47.45 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh---
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT--- 253 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~--- 253 (371)
...++.+||-+|+|. |..++.+++.+ +. +|++++.+++..+.+++ .|...-+... ..+..+.+..+.
T Consensus 67 ~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~--~gda~~~l~~l~~~~ 142 (237)
T 3c3y_A 67 KLVNAKKTIEVGVFT-GYSLLLTALSIPDDG-KITAIDFDREAYEIGLPFIRKAGVEHKINFI--ESDAMLALDNLLQGQ 142 (237)
T ss_dssp HHTTCCEEEEECCTT-SHHHHHHHHHSCTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEE--ESCHHHHHHHHHHST
T ss_pred HhhCCCEEEEeCCCC-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--EcCHHHHHHHHHhcc
Confidence 445678999998763 67778888876 45 99999999998877743 4543111111 122333333332
Q ss_pred --CCCccEEEEcCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 254 --DGGADYSFECIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 --~gg~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.||+||--... ...++.+.+.|+++ |.++.-.
T Consensus 143 ~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~ 181 (237)
T 3c3y_A 143 ESEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDN 181 (237)
T ss_dssp TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEec
Confidence 3479998854332 23478888999997 9887643
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.024 Score=48.02 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=66.1
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH----cCC-------ceEeCCCCCCchHHHHHH
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGV-------TEFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~-------~~vi~~~~~~~~~~~~v~ 250 (371)
.++++++||-+|+|. |..+..+++..|. .+|++++.++...+.+++ .|. ..++..+ ..+.
T Consensus 74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-----~~~~-- 145 (226)
T 1i1n_A 74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD-----GRMG-- 145 (226)
T ss_dssp TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC-----GGGC--
T ss_pred hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC-----cccC--
Confidence 378899999999875 7788888887763 299999999998877743 221 1122111 1000
Q ss_pred HHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEec
Q 017460 251 RITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 251 ~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
....+.||+|+........++.+.+.|+++ |+++..-
T Consensus 146 ~~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~ 182 (226)
T 1i1n_A 146 YAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPV 182 (226)
T ss_dssp CGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred cccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEE
Confidence 011237999987766555678889999997 9987653
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.045 Score=47.90 Aligned_cols=95 Identities=16% Similarity=0.260 Sum_probs=64.2
Q ss_pred hcchhhhhHHhHhhhhcCC-CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVADI-SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~~-~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||....++..+ +..++ -.|.+++|+|. +.+|..++.++...|+ .|+++.+...
T Consensus 140 ~~PcTp~gv~~lL-~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T~--------------------- 196 (286)
T 4a5o_A 140 LRPCTPKGIMTLL-ASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFTR--------------------- 196 (286)
T ss_dssp SCCHHHHHHHHHH-HHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTCS---------------------
T ss_pred CCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCCc---------------------
Confidence 3444444444444 44443 47999999997 5699999999999999 8888854321
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
++.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|...
T Consensus 197 ~L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~~ 236 (286)
T 4a5o_A 197 DLADHVS-----RADLVVVAAGKPGLVKG--EWIKEG-AIVIDVGINR 236 (286)
T ss_dssp CHHHHHH-----TCSEEEECCCCTTCBCG--GGSCTT-CEEEECCSCS
T ss_pred CHHHHhc-----cCCEEEECCCCCCCCCH--HHcCCC-eEEEEecccc
Confidence 2333332 47999999997654332 456886 7888888653
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.026 Score=48.69 Aligned_cols=75 Identities=13% Similarity=0.287 Sum_probs=51.3
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc-e--EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT-E--FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~-~--vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ ++++.. . ..|..+ .+.+.+.+.+... +++|++|
T Consensus 2 ~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~lv 79 (248)
T 3asu_A 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWCNIDILV 79 (248)
T ss_dssp EEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHTSCTTTCCCCEEE
T ss_pred EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCCEEE
Confidence 6788886 8999999998888999 999999998876655 444432 1 235441 2333333443332 3799999
Q ss_pred EcCC
Q 017460 262 ECIG 265 (371)
Q Consensus 262 d~~g 265 (371)
++.|
T Consensus 80 nnAg 83 (248)
T 3asu_A 80 NNAG 83 (248)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9887
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.013 Score=51.23 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=48.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhC--CCccEEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD--GGADYSFE 262 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~--gg~dvVid 262 (371)
.++++||+|+ |++|.+.+..+...|+ +|++++++.++.+....+ ..|..+ .......+..... +++|++|.
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~-~~~~~~~~~~~~~~~g~iD~lvn 100 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLRE-AAYADGLPGAVAAGLGRLDIVVN 100 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTS-HHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 4788999986 8999999998888999 999998876653221111 123331 1222222222221 37999999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.|.
T Consensus 101 nAg~ 104 (266)
T 3uxy_A 101 NAGV 104 (266)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8874
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.15 Score=45.17 Aligned_cols=87 Identities=22% Similarity=0.374 Sum_probs=60.7
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|+. +. .+..+.+. .+|+||-+++.+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~------~~~~~~~~-----~~D~vi~~vp~~ 71 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-AC------ENNQKVAA-----ASDIIFTSLPNA 71 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-EC------SSHHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-ec------CCHHHHHh-----CCCEEEEECCCH
Confidence 579999999999998888878898 899999999988888776653 11 12323332 379999999765
Q ss_pred HHHHHHH-------HHhccCCceEEEec
Q 017460 268 GMITTAL-------QSCCDGWGLAVTLG 288 (371)
Q Consensus 268 ~~l~~~~-------~~l~~~~G~~v~~g 288 (371)
..++..+ ..++++ ..++.+.
T Consensus 72 ~~~~~v~~~~~~l~~~l~~~-~~vv~~~ 98 (301)
T 3cky_A 72 GIVETVMNGPGGVLSACKAG-TVIVDMS 98 (301)
T ss_dssp HHHHHHHHSTTCHHHHSCTT-CEEEECC
T ss_pred HHHHHHHcCcchHhhcCCCC-CEEEECC
Confidence 5455444 245554 4555554
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.048 Score=48.29 Aligned_cols=79 Identities=11% Similarity=0.112 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc-CChhhHHHH-H----HcCCce---EeCCCCCCc------------
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKCEKA-K----AFGVTE---FLNPNDNNE------------ 243 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~-~~~~~~~~~-~----~lg~~~---vi~~~~~~~------------ 243 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++ +++++.+.+ + +.+... ..|..+ ..
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 85 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN-VATAPVSGADGSAP 85 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-SCBCCCC----CCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCC-cccccccccccccc
Confidence 4678999985 8999999999988999 999998 888766544 2 334321 235442 23
Q ss_pred -----hHHHHHHHHhC--CCccEEEEcCCC
Q 017460 244 -----PVQQVIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 244 -----~~~~~v~~~~~--gg~dvVid~~g~ 266 (371)
.+.+.+.+... +++|++|++.|.
T Consensus 86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~ 115 (291)
T 1e7w_A 86 VTLFTRCAELVAACYTHWGRCDVLVNNASS 115 (291)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cchHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 44444443322 379999999873
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.048 Score=47.98 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=51.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH----HHc-CCc-eE--eCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAF-GVT-EF--LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~----~~l-g~~-~v--i~~~~~~~~~~~~v~~~~~- 254 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++ ++++.+.+ ++. +.. .. .|..+ .+.+.+.+.+...
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK-PSEIADMMAMVADR 101 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC-HHHHHHHHHHHHHH
Confidence 3688999986 8999999999989999 9999988 54544433 222 322 22 24431 2333333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 102 ~g~iD~lv~nAg~ 114 (281)
T 3v2h_A 102 FGGADILVNNAGV 114 (281)
T ss_dssp TSSCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 379999998874
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.028 Score=48.94 Aligned_cols=79 Identities=23% Similarity=0.367 Sum_probs=52.9
Q ss_pred CCCEEEEEcc-C-hHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-H---HcCC-c-e--EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-G-TVGLSVAQGAKARGASRIIGVDTNPEKCEKA-K---AFGV-T-E--FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g-~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~---~lg~-~-~--vi~~~~~~~~~~~~v~~~~~- 254 (371)
.++++||+|+ | ++|.+.+..+...|+ +|++++++.++.+.+ + +.+. . . ..|..+ .+.+.+.+.+...
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS-TEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 4789999987 6 799999988888899 999999998876554 2 2221 1 2 235541 2333333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 99 ~g~id~li~~Ag~ 111 (266)
T 3o38_A 99 AGRLDVLVNNAGL 111 (266)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCcEEEECCCc
Confidence 379999999883
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.021 Score=49.38 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=52.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC-hhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~-~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
.+.++||+|+ |.+|...+..+...|+ +|++++++ +++.+.+ ++.+... . .|..+ .+.+.+.+.+...
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT-SEACQQLVDEFVAKF 83 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 3678999986 9999999998888999 99999888 6655443 2234321 2 24441 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 84 g~id~vi~~Ag~ 95 (258)
T 3afn_B 84 GGIDVLINNAGG 95 (258)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.038 Score=49.61 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=52.0
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC------------hhhHHH----HHHcCCce---EeCCCCCCch
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN------------PEKCEK----AKAFGVTE---FLNPNDNNEP 244 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~------------~~~~~~----~~~lg~~~---vi~~~~~~~~ 244 (371)
-.|+++||+|+ +++|.+.+..+...|+ +|++++++ .++.+. +++.|... ..|..+ ...
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~ 121 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD-LAS 121 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHH
Confidence 35789999986 8999999999989999 99998765 343332 23445432 235541 233
Q ss_pred HHHHHHHHhC--CCccEEEEcCCC
Q 017460 245 VQQVIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 245 ~~~~v~~~~~--gg~dvVid~~g~ 266 (371)
+.+.+.+... +++|++|++.|.
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 3333333322 379999999873
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.047 Score=49.95 Aligned_cols=87 Identities=23% Similarity=0.301 Sum_probs=59.1
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++. +.+.+.+.|+.. .++.+.+. ..|+|+-++.
T Consensus 175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~~~--------~~l~ell~-----~aDvV~l~~P 239 (365)
T 4hy3_A 175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGVEP--------ASLEDVLT-----KSDFIFVVAA 239 (365)
T ss_dssp SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTCEE--------CCHHHHHH-----SCSEEEECSC
T ss_pred CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCeee--------CCHHHHHh-----cCCEEEEcCc
Confidence 37899999999999999999999999 999998875 444556667531 12222222 4677776655
Q ss_pred ChH----HH-HHHHHHhccCCceEEEec
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g 288 (371)
... .+ ...+..++++ ..+|.++
T Consensus 240 lt~~T~~li~~~~l~~mk~g-ailIN~a 266 (365)
T 4hy3_A 240 VTSENKRFLGAEAFSSMRRG-AAFILLS 266 (365)
T ss_dssp SSCC---CCCHHHHHTSCTT-CEEEECS
T ss_pred CCHHHHhhcCHHHHhcCCCC-cEEEECc
Confidence 321 11 4556667775 7777665
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.097 Score=48.53 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=69.1
Q ss_pred HhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-----------HcCC--c--eEeCCC
Q 017460 175 LGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-----------AFGV--T--EFLNPN 239 (371)
Q Consensus 175 ~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-----------~lg~--~--~vi~~~ 239 (371)
+..+....+++++++||=+|+|. |.+++++|+..|+.+|++++.+++-.+.++ .+|. . .++..+
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 33345677899999999999874 777888888889867999999986544443 3343 2 223221
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCC--C---hHHHHHHHHHhccCCceEEEecCC
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIG--D---TGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g--~---~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
-.+..+.+.+ ..+|+|+-..- . ...+.+.++.|++| |+++.+-..
T Consensus 241 ~~~lp~~d~~-----~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG-GrIVssE~f 290 (438)
T 3uwp_A 241 FLSEEWRERI-----ANTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSKPF 290 (438)
T ss_dssp TTSHHHHHHH-----HTCSEEEECCTTCCHHHHHHHHHHHTTSCTT-CEEEESSCS
T ss_pred ccCCcccccc-----CCccEEEEcccccCchHHHHHHHHHHcCCCC-cEEEEeecc
Confidence 0022222211 15899884211 1 12466777889998 999987543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.026 Score=48.92 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=51.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |++|.+.+..+...|+ +|+++++ ++++.+.+ ++.+... + .|..+ ...+.+.+.+...
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 3678999986 9999999988888899 8999988 76655433 3334322 2 24431 2233333333322
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 84 g~id~li~~Ag 94 (261)
T 1gee_A 84 GKLDVMINNAG 94 (261)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37999999887
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.13 Score=45.20 Aligned_cols=90 Identities=22% Similarity=0.309 Sum_probs=60.8
Q ss_pred EEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhCC-CccEEEEcCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g 265 (371)
+|.|+|+|.+|.+.++.+...|. .+|++.++++++.+.++++|... .... ..+.+ . ++|+||.++.
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~------~~~~~-----~~~aDvVilavp 71 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTS------IAKVE-----DFSPDFVMLSSP 71 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESC------GGGGG-----GTCCSEEEECSC
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCC------HHHHh-----cCCCCEEEEcCC
Confidence 68999999999999988888875 27999999999998888888641 2211 11111 2 5899999998
Q ss_pred ChHH---HHHHHHHhccCCceEEEecCC
Q 017460 266 DTGM---ITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 266 ~~~~---l~~~~~~l~~~~G~~v~~g~~ 290 (371)
.... +......++++ ..++.++..
T Consensus 72 ~~~~~~v~~~l~~~l~~~-~iv~~~~~~ 98 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSED-ATVTDQGSV 98 (281)
T ss_dssp HHHHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred HHHHHHHHHHHHhhCCCC-cEEEECCCC
Confidence 6432 22333345664 555555543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.048 Score=43.64 Aligned_cols=97 Identities=21% Similarity=0.157 Sum_probs=62.7
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcCCceEe--CCCCCCchHHHHHHHHhC-CCccE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVTEFL--NPNDNNEPVQQVIKRITD-GGADY 259 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~~~vi--~~~~~~~~~~~~v~~~~~-gg~dv 259 (371)
++++++||-+|+|. |..+..+++..|. .++++++.++ ..+. .-..++ |.. +....+.+..... +.+|+
T Consensus 20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~~--~~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDFR--DELVMKALLERVGDSKVQV 91 (180)
T ss_dssp CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCTT--SHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEcccc--cchhhhhhhccCCCCceeE
Confidence 67889999999876 7788888888642 3999999887 3321 111222 222 2233333444333 48999
Q ss_pred EEEc-----CCC------------hHHHHHHHHHhccCCceEEEecC
Q 017460 260 SFEC-----IGD------------TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 260 Vid~-----~g~------------~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
|+.. .+. ...++.+.+.|+++ |.++....
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 137 (180)
T 1ej0_A 92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVF 137 (180)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 9973 332 24577888899997 99887543
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.04 Score=47.59 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=51.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh--hhHHHHHHc--CCc-e--EeCCCCCC-chHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP--EKCEKAKAF--GVT-E--FLNPNDNN-EPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~l--g~~-~--vi~~~~~~-~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |++|.+.+..+...|+++|+++++++ +..+.+++. +.. . ..|..+ . ....+.+.+...
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV-PVAESKKLLKKIFDQL 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS-CHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC-ChHHHHHHHHHHHHhc
Confidence 4678999985 99999999999889994488888876 334444333 222 1 235542 2 334443443322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 83 g~id~lv~~Ag~ 94 (254)
T 1sby_A 83 KTVDILINGAGI 94 (254)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 379999999873
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.032 Score=48.56 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=52.8
Q ss_pred CCCCCEEEEEc-c--ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceE--eCCCCCCchHHHHHHHHhC
Q 017460 184 ISKGSTVVIFG-L--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF--LNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 184 ~~~~~~VlI~G-a--g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v--i~~~~~~~~~~~~v~~~~~ 254 (371)
..++++|||+| + +++|.+.+..+...|+ +|++++++++..+.+ ++.+...+ .|..+ .......+.+...
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVAD-DAQIDALFASLKT 88 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCC-HHHHHHHHHHHHH
Confidence 45688999997 4 6899999998888999 999998886544444 33443222 35441 2233333333322
Q ss_pred --CCccEEEEcCC
Q 017460 255 --GGADYSFECIG 265 (371)
Q Consensus 255 --gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 89 ~~g~id~lv~nAg 101 (271)
T 3ek2_A 89 HWDSLDGLVHSIG 101 (271)
T ss_dssp HCSCEEEEEECCC
T ss_pred HcCCCCEEEECCc
Confidence 37999999887
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.037 Score=49.94 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=50.5
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC-----hhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHh
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-----PEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~-----~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~ 253 (371)
++++||+|+ |++|.+.+..+...|+ +|+++.++ .++.+.+ ++.+.. . ..|..+ ...+.+.+.+..
T Consensus 5 ~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd-~~~v~~~~~~~~ 82 (324)
T 3u9l_A 5 KKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS-QVSVDRAIDQII 82 (324)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHH
Confidence 578999986 9999999999999999 99987665 3333333 233432 1 235441 333444444332
Q ss_pred C--CCccEEEEcCC
Q 017460 254 D--GGADYSFECIG 265 (371)
Q Consensus 254 ~--gg~dvVid~~g 265 (371)
. +++|++|++.|
T Consensus 83 ~~~g~iD~lVnnAG 96 (324)
T 3u9l_A 83 GEDGRIDVLIHNAG 96 (324)
T ss_dssp HHHSCCSEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 2 37999999998
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.089 Score=43.74 Aligned_cols=96 Identities=9% Similarity=0.075 Sum_probs=61.9
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc-CC-----------------ceEe--CCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GV-----------------TEFL--NPN 239 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~-----------------~~vi--~~~ 239 (371)
....+.++.+||.+|+|. |..+..+++. |+ +|++++.+++-.+.+++. +. ..++ |..
T Consensus 16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 92 (203)
T 1pjz_A 16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 92 (203)
T ss_dssp HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence 334567889999999874 6667777775 88 999999999988888653 11 0111 322
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCC-----h---HHHHHHHHHhccCCceEEEe
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGD-----T---GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~-----~---~~l~~~~~~l~~~~G~~v~~ 287 (371)
+..+.+ .+.||+|++...- . ..++...+.|+++ |+++.+
T Consensus 93 --~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~l~ 139 (203)
T 1pjz_A 93 --ALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLI 139 (203)
T ss_dssp --SSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEE
T ss_pred --cCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 112211 0269999973321 1 2467788899997 984433
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.016 Score=49.96 Aligned_cols=75 Identities=8% Similarity=0.013 Sum_probs=50.3
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-c--CChhhHHHH-HHc-CCceEeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-D--TNPEKCEKA-KAF-GVTEFLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~--~~~~~~~~~-~~l-g~~~vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
++++||+|+ |++|.+.++.+...|+ +|+++ . +++++.+.+ +++ +.+ +.+... -..+.+.+.+.. +++|++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~-g~iD~l 76 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGTI-ALAEQK-PERLVDATLQHG-EAIDTI 76 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCC-GGGHHHHHGGGS-SCEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHH-HHHHHHHHHHHc-CCCCEE
Confidence 467899986 8999999999988999 99999 6 888776655 444 332 333321 123333333222 379999
Q ss_pred EEcCC
Q 017460 261 FECIG 265 (371)
Q Consensus 261 id~~g 265 (371)
|++.|
T Consensus 77 v~~Ag 81 (244)
T 1zmo_A 77 VSNDY 81 (244)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99887
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.026 Score=48.75 Aligned_cols=75 Identities=21% Similarity=0.319 Sum_probs=50.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++++++. ++.++.. ..|..+ .+.+.+.+.+... +++|++|
T Consensus 6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~id~lv 79 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD-AAQVAQVCQRLLAETERLDALV 79 (250)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC-HHHHHHHHHHHHHHCSCCCEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4678999986 9999999999989999 99999887653 2234322 235441 2333334433322 3799999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
++.|.
T Consensus 80 ~~Ag~ 84 (250)
T 2fwm_X 80 NAAGI 84 (250)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99873
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0083 Score=53.71 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=61.4
Q ss_pred CCCCEEEEEccC-hHHHHHHHHHHHcCCCEEEEEcCChhhH-HHHHHcCCc--eE--eC-CCCCCchHHHHHHHHhCCCc
Q 017460 185 SKGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKC-EKAKAFGVT--EF--LN-PNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 185 ~~~~~VlI~Gag-~~G~~ai~la~~~G~~~vi~~~~~~~~~-~~~~~lg~~--~v--i~-~~~~~~~~~~~v~~~~~gg~ 257 (371)
-.|.+++|+|+| .+|..+++++...|+ .|++++++..+. ++..+++.. .. +. .+ ..++.+.++ .+
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~--~~~L~e~l~-----~A 246 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYS--EDLLKKCSL-----DS 246 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCCCCEEEEEEECC--HHHHHHHHH-----HC
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhhccccccccccc--HhHHHHHhc-----cC
Confidence 468999999997 579999999999998 899988874332 112223321 00 00 10 123444444 48
Q ss_pred cEEEEcCCChHH-HHHHHHHhccCCceEEEecCCC
Q 017460 258 DYSFECIGDTGM-ITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 258 dvVid~~g~~~~-l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
|+||.++|.+.. +.. +.++++ ..++.+|...
T Consensus 247 DIVIsAtg~p~~vI~~--e~vk~G-avVIDVgi~r 278 (320)
T 1edz_A 247 DVVITGVPSENYKFPT--EYIKEG-AVCINFACTK 278 (320)
T ss_dssp SEEEECCCCTTCCBCT--TTSCTT-EEEEECSSSC
T ss_pred CEEEECCCCCcceeCH--HHcCCC-eEEEEcCCCc
Confidence 999999998643 322 236775 7778887653
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.029 Score=49.53 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc-----CC---------c--eEeCCCCCCchHHHH
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-----GV---------T--EFLNPNDNNEPVQQV 248 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-----g~---------~--~vi~~~~~~~~~~~~ 248 (371)
.++.+||++|+|. |..+..+++. +..+|++++.+++-.+.+++. +. . .++. .+..+.
T Consensus 74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~-----~D~~~~ 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-----GDGFEF 146 (281)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-----SCHHHH
T ss_pred CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE-----CchHHH
Confidence 4578999998764 6666777777 766999999999988888653 21 1 1221 223333
Q ss_pred HHHHhCCCccEEEEcCC----------ChHHHHHHHHHhccCCceEEEe
Q 017460 249 IKRITDGGADYSFECIG----------DTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 249 v~~~~~gg~dvVid~~g----------~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
+.. .+.||+|+--.. ....++.+.+.|+++ |.++..
T Consensus 147 l~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~ 192 (281)
T 1mjf_A 147 IKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQ 192 (281)
T ss_dssp HHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEE
T ss_pred hcc--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEE
Confidence 333 448999874332 134578888999997 998775
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.025 Score=49.63 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=51.8
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC---ceE--eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV---TEF--LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~---~~v--i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+ +++.. ... .|..+ .+.+...+.+... +++|
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 99 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD-RAAMSAAVDNLPEEFATLR 99 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHTCCGGGSSCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhCCCC
Confidence 67899986 8999999998888999 999999998877654 33321 112 35441 2233333333322 3689
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
++|++.|.
T Consensus 100 ~lvnnAG~ 107 (272)
T 2nwq_A 100 GLINNAGL 107 (272)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998873
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.048 Score=49.39 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=64.5
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC------C----ceEeCCCCCCchHHHHHHHHh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG------V----TEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg------~----~~vi~~~~~~~~~~~~v~~~~ 253 (371)
..++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.- . ..++. .+..+.+....
T Consensus 118 ~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~-----~D~~~~l~~~~ 191 (334)
T 1xj5_A 118 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI-----GDGVAFLKNAA 191 (334)
T ss_dssp SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE-----SCHHHHHHTSC
T ss_pred CCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE-----CCHHHHHHhcc
Confidence 45678999998763 666777777765459999999999888876531 1 11221 23333333332
Q ss_pred CCCccEEEEcCC----------ChHHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFECIG----------DTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid~~g----------~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.||+|+-... ....++.+.+.|+++ |.++.-
T Consensus 192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~ 234 (334)
T 1xj5_A 192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQ 234 (334)
T ss_dssp TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence 348999885322 234678889999997 998875
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.049 Score=47.59 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~ 254 (371)
+.++.++||+|+ |++|.+.+..+...|+ +|+++ .++.++.+.+ ++.+... . .|..+ ...+.+.+.+...
T Consensus 23 m~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN-AADIAAMFSAVDR 100 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHH
Confidence 445788999986 9999999999999999 77665 6777665543 3344432 2 24441 2233333333322
Q ss_pred --CCccEEEEcCC
Q 017460 255 --GGADYSFECIG 265 (371)
Q Consensus 255 --gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 101 ~~g~id~li~nAg 113 (272)
T 4e3z_A 101 QFGRLDGLVNNAG 113 (272)
T ss_dssp HHSCCCEEEECCC
T ss_pred hCCCCCEEEECCC
Confidence 37999999887
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.056 Score=48.80 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=53.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc-CChhhHHHHH-----HcCCce---EeCCCCCCc------------
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKCEKAK-----AFGVTE---FLNPNDNNE------------ 243 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~-~~~~~~~~~~-----~lg~~~---vi~~~~~~~------------ 243 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++ +++++.+.+. +.+... ..|..+ ..
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~ 122 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN-VATAPVSGADGSAP 122 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-SCBCC-------CC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCC-chhccccccccccc
Confidence 4678999986 9999999999989999 999998 8887765542 234321 235442 23
Q ss_pred -----hHHHHHHHHhC--CCccEEEEcCCC
Q 017460 244 -----PVQQVIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 244 -----~~~~~v~~~~~--gg~dvVid~~g~ 266 (371)
.+...+.+... +++|++|.+.|.
T Consensus 123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~ 152 (328)
T 2qhx_A 123 VTLFTRCAELVAACYTHWGRCDVLVNNASS 152 (328)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cccHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 34444433322 379999999873
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.042 Score=49.41 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=51.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC---------ChhhHHH----HHHcCCceEeCCCCCCchHHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT---------NPEKCEK----AKAFGVTEFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~---------~~~~~~~----~~~lg~~~vi~~~~~~~~~~~~v~~ 251 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++ +.++.+. +++.+...+.|..+ .......+.+
T Consensus 8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~-~~~~~~~~~~ 85 (319)
T 1gz6_A 8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLVKT 85 (319)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCC-HHHHHHHHHH
Confidence 4678999986 8999999998888999 8988643 4444433 33445544556552 2333333333
Q ss_pred Hh--CCCccEEEEcCC
Q 017460 252 IT--DGGADYSFECIG 265 (371)
Q Consensus 252 ~~--~gg~dvVid~~g 265 (371)
.. -+++|++|++.|
T Consensus 86 ~~~~~g~iD~lVnnAG 101 (319)
T 1gz6_A 86 ALDTFGRIDVVVNNAG 101 (319)
T ss_dssp HHHHTSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 32 137999999887
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.037 Score=49.77 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=51.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC----------hhhHHH----HHHcCCceE---eCCCCCCchHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN----------PEKCEK----AKAFGVTEF---LNPNDNNEPVQQ 247 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~----------~~~~~~----~~~lg~~~v---i~~~~~~~~~~~ 247 (371)
.++++||+|+ +++|.+.+..+...|+ +|++++++ .++.+. +++.|.... .|..+ .+...+
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~ 103 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVAD-WDQAAG 103 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTS-HHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHH
Confidence 4788999985 8999999998888999 99999876 333332 344454322 24431 223333
Q ss_pred HHHHHhC--CCccEEEEcCCC
Q 017460 248 VIKRITD--GGADYSFECIGD 266 (371)
Q Consensus 248 ~v~~~~~--gg~dvVid~~g~ 266 (371)
.+.+... +++|++|.+.|.
T Consensus 104 ~~~~~~~~~g~iD~lv~nAg~ 124 (322)
T 3qlj_A 104 LIQTAVETFGGLDVLVNNAGI 124 (322)
T ss_dssp HHHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 3333322 379999999884
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.033 Score=48.57 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=49.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++ .-.+.. ..|..+ .+.+.+.+.+... +++|++|
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~iD~lv 79 (264)
T 2dtx_A 7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTN-PDQVKASIDHIFKEYGSISVLV 79 (264)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTC-HHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 3678999986 9999999999988999 99999887765 111221 235441 2333333333322 3799999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 80 ~~Ag~ 84 (264)
T 2dtx_A 80 NNAGI 84 (264)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99873
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.046 Score=47.91 Aligned_cols=94 Identities=16% Similarity=0.260 Sum_probs=63.1
Q ss_pred hcchhhhhHHhHhhhhcC-CCCCCEEEEEccC-hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVAD-ISKGSTVVIFGLG-TVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~-~~~~~~VlI~Gag-~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||........+ +... --.|.+++|+|.| .+|.-+++++...|+ .|+++.+.. .
T Consensus 138 ~~PcTp~gi~~ll-~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t---------------------~ 194 (288)
T 1b0a_A 138 LRPCTPRGIVTLL-ERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT---------------------K 194 (288)
T ss_dssp SCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC---------------------S
T ss_pred CCCCcHHHHHHHH-HHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCc---------------------h
Confidence 4454443344434 3333 3468999999987 589999999999999 888885433 2
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
++.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|..
T Consensus 195 ~L~~~~~-----~ADIVI~Avg~p~lI~~--~~vk~G-avVIDVgi~ 233 (288)
T 1b0a_A 195 NLRHHVE-----NADLLIVAVGKPGFIPG--DWIKEG-AIVIDVGIN 233 (288)
T ss_dssp CHHHHHH-----HCSEEEECSCCTTCBCT--TTSCTT-CEEEECCCE
T ss_pred hHHHHhc-----cCCEEEECCCCcCcCCH--HHcCCC-cEEEEccCC
Confidence 3444443 37999999998753322 236776 778888765
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.041 Score=47.12 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=49.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHH----HHcCCce-E--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
++.++||+|+ |++|...+..+...|+ +|+++ .+++++.+.+ ++.+... . .|..+ ...+.+.+.+...
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN-PEDVENMVKTAMDAF 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHhc
Confidence 4678999986 9999999999988999 89888 5665554332 3334322 2 34441 2233333333222
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 82 ~~~d~vi~~Ag~ 93 (247)
T 2hq1_A 82 GRIDILVNNAGI 93 (247)
T ss_dssp SCCCEEEECC--
T ss_pred CCCCEEEECCCC
Confidence 379999998874
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.036 Score=47.42 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=49.8
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHH----HHcCCc--e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVT--E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~--~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+++||+|+ |++|...++.+...|+ +|+++ .+++++.+.+ ++.+.. . ..|..+ .+...+.+.+... +
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE-AEAATALVHQAAEVLG 79 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC-HHHHHHHHHHHHHhcC
Confidence 57899986 9999999998888999 88887 8887766543 233432 1 124441 2233333333221 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 80 ~~d~li~~Ag 89 (245)
T 2ph3_A 80 GLDTLVNNAG 89 (245)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.072 Score=48.25 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=49.7
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh----hHHHHHHc-------CCceE-eCCCCCCchHHHHHHHHh
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE----KCEKAKAF-------GVTEF-LNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~----~~~~~~~l-------g~~~v-i~~~~~~~~~~~~v~~~~ 253 (371)
+.+|||+|+ |.+|...+..+...|+ +|++++++.. ..+.++.+ ++..+ .|.. + .+.+.++.
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d---~~~~~~~~ 98 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR--D---LTTCEQVM 98 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTT--C---HHHHHHHT
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCC--C---HHHHHHHh
Confidence 679999986 9999999999989998 9999988543 33333332 22222 2443 2 23344444
Q ss_pred CCCccEEEEcCCC
Q 017460 254 DGGADYSFECIGD 266 (371)
Q Consensus 254 ~gg~dvVid~~g~ 266 (371)
. ++|+||.+.+.
T Consensus 99 ~-~~d~Vih~A~~ 110 (351)
T 3ruf_A 99 K-GVDHVLHQAAL 110 (351)
T ss_dssp T-TCSEEEECCCC
T ss_pred c-CCCEEEECCcc
Confidence 3 79999999974
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.053 Score=47.94 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=55.8
Q ss_pred eCCceEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCC--CEEEEEcCChhhH
Q 017460 148 HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGA--SRIIGVDTNPEKC 224 (371)
Q Consensus 148 ~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~--~~vi~~~~~~~~~ 224 (371)
+.+++.|++..++..... ... -.++++||+|+ +++|.+.+..+...|+ .+|+.++++.++.
T Consensus 10 ~~~~~~~~~~~m~~~~~~------------~~~----l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~ 73 (287)
T 3rku_A 10 HSSFLVPRGSHMSQGRKA------------AER----LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKL 73 (287)
T ss_dssp ----------CCTTCHHH------------HHH----HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred ccceeeecCcccccCccc------------hhh----cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHH
Confidence 456778887776533211 101 13689999986 8999988776655554 2899999998877
Q ss_pred HHHHH-c-----CCce---EeCCCCCCchHHHHHHHHhC--CCccEEEEcCC
Q 017460 225 EKAKA-F-----GVTE---FLNPNDNNEPVQQVIKRITD--GGADYSFECIG 265 (371)
Q Consensus 225 ~~~~~-l-----g~~~---vi~~~~~~~~~~~~v~~~~~--gg~dvVid~~g 265 (371)
+.+.+ + +... ..|..+ .+.+.+.+.+... +++|++|++.|
T Consensus 74 ~~~~~~l~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~lVnnAG 124 (287)
T 3rku_A 74 EELKKTIDQEFPNAKVHVAQLDITQ-AEKIKPFIENLPQEFKDIDILVNNAG 124 (287)
T ss_dssp HHHHHHHHHHCTTCEEEEEECCTTC-GGGHHHHHHTSCGGGCSCCEEEECCC
T ss_pred HHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 65522 2 3321 235542 3445555554433 37999999887
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.033 Score=50.24 Aligned_cols=74 Identities=19% Similarity=0.312 Sum_probs=50.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhH--HHHHHcCC---ceEe--CCCCCCchHHHHHHHHhCC-Cc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC--EKAKAFGV---TEFL--NPNDNNEPVQQVIKRITDG-GA 257 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~--~~~~~lg~---~~vi--~~~~~~~~~~~~v~~~~~g-g~ 257 (371)
+.+|||+|+ |.+|...+..+...|+ +|+++++++++. +.+++++. ...+ |.. + .+.+.+...+ ++
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d---~~~~~~~~~~~~~ 76 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDLL--E---FSNIIRTIEKVQP 76 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTT--C---HHHHHHHHHHHCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCCC--C---HHHHHHHHHhcCC
Confidence 578999986 9999999988888898 999999887543 24444431 1222 332 2 2233343334 68
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+||.+.+.
T Consensus 77 d~vih~A~~ 85 (345)
T 2z1m_A 77 DEVYNLAAQ 85 (345)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=95.52 E-value=0.025 Score=49.74 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=61.7
Q ss_pred EEEEEcc-ChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+|||+|+ |.+|...++.+... |+ +|+++++++++.+.+...++..+ .|.. + .+.+.+... ++|+||.+.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~--d---~~~l~~~~~-~~d~vi~~a 74 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYN--Q---PESLQKAFA-GVSKLLFIS 74 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTT--C---HHHHHHHTT-TCSEEEECC
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccC--C---HHHHHHHHh-cCCEEEEcC
Confidence 5899986 99999998888777 88 89999998877666655555433 2443 2 233444433 699999998
Q ss_pred CCh-------HHHHHHHHHhccC-CceEEEecCC
Q 017460 265 GDT-------GMITTALQSCCDG-WGLAVTLGVP 290 (371)
Q Consensus 265 g~~-------~~l~~~~~~l~~~-~G~~v~~g~~ 290 (371)
+.. ......++.+... -++++.+++.
T Consensus 75 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~ 108 (287)
T 2jl1_A 75 GPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA 108 (287)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred CCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 741 1123344444432 1478877654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.017 Score=50.59 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=50.5
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccE
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
..++++|||+|+ +++|.+.+..+...|+ +|+++++++++.. . .+.. ..|..+ .+...+.+.+... +++|+
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~---~-~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~ 84 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDV---N-VSDHFKIDVTN-EEEVKEAVEKTTKKYGRIDI 84 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CT---T-SSEEEECCTTC-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhcc---C-ceeEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 456889999986 8999999998888999 9999988776531 1 1211 235541 2333333333322 37999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|.+.|.
T Consensus 85 lv~nAg~ 91 (269)
T 3vtz_A 85 LVNNAGI 91 (269)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9998874
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.09 Score=47.69 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=63.9
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
.+|.|+|.|.+|.+.+..++..|. +|++.++++++.+.++++|+.. .+ +..+.+.... .+.|+||-++...
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~-~~------~~~e~~~~a~-~~aDlVilavP~~ 79 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDV-SA------DLEATLQRAA-AEDALIVLAVPMT 79 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCE-ES------CHHHHHHHHH-HTTCEEEECSCHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee-eC------CHHHHHHhcc-cCCCEEEEeCCHH
Confidence 579999999999999999998998 9999999999999999999842 21 2333333220 1579999999853
Q ss_pred HHHHHHHHH---hccCCceEEEecCC
Q 017460 268 GMITTALQS---CCDGWGLAVTLGVP 290 (371)
Q Consensus 268 ~~l~~~~~~---l~~~~G~~v~~g~~ 290 (371)
.+...++. ++++ ..++.+++.
T Consensus 80 -~~~~vl~~l~~~~~~-~iv~Dv~Sv 103 (341)
T 3ktd_A 80 -AIDSLLDAVHTHAPN-NGFTDVVSV 103 (341)
T ss_dssp -HHHHHHHHHHHHCTT-CCEEECCSC
T ss_pred -HHHHHHHHHHccCCC-CEEEEcCCC
Confidence 33333322 3454 555566554
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.06 Score=46.04 Aligned_cols=72 Identities=18% Similarity=0.095 Sum_probs=49.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
.+.+|||+|+ |.+|...++.+... |+ +|+++++++++.+.+ ..++.. ..|.. + .+.+.++.. ++|+||
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~--d---~~~~~~~~~-~~d~vi 74 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDIT--D---ADSINPAFQ-GIDALV 74 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTT--S---HHHHHHHHT-TCSEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCC--C---HHHHHHHHc-CCCEEE
Confidence 3678999986 99999999988888 78 999999988765443 112322 22443 2 233444433 699999
Q ss_pred EcCC
Q 017460 262 ECIG 265 (371)
Q Consensus 262 d~~g 265 (371)
.+.+
T Consensus 75 ~~a~ 78 (253)
T 1xq6_A 75 ILTS 78 (253)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9886
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.015 Score=50.34 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=57.0
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhC---CCccEEEEc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD---GGADYSFEC 263 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~---gg~dvVid~ 263 (371)
+++||+|+ |++|.+.+..+...|+ +|+++++++++.+. ....|. .-.+.+.++.. +++|++|++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------~~~~Dl-----~~~~~v~~~~~~~~~~id~lv~~ 69 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------DLSTAE-----GRKQAIADVLAKCSKGMDGLVLC 69 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHH-----HHHHHHHHHHTTCTTCCSEEEEC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------ccccCC-----CCHHHHHHHHHHhCCCCCEEEEC
Confidence 36899986 9999999999888999 99999888754321 100111 11222333322 478999999
Q ss_pred CCChH------------------HHHHHHHHhcc-CCceEEEecCCC
Q 017460 264 IGDTG------------------MITTALQSCCD-GWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~------------------~l~~~~~~l~~-~~G~~v~~g~~~ 291 (371)
.|... ..+.++..+.. +.|++|.+++..
T Consensus 70 Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~ 116 (257)
T 1fjh_A 70 AGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA 116 (257)
T ss_dssp CCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred CCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence 87432 12334444432 228999987653
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.17 Score=46.14 Aligned_cols=91 Identities=12% Similarity=0.246 Sum_probs=62.1
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
..+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+.. ..+..+.+... ..+|+||-++..
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~a--~~~DvVi~~vp~ 91 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAG-------ARSIEEFCAKL--VKPRVVWLMVPA 91 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBC-------CSSHHHHHHHS--CSSCEEEECSCG
T ss_pred CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEE-------eCCHHHHHhcC--CCCCEEEEeCCH
Confidence 4689999999999999988888998 9999999999999888777531 11233333321 145888888876
Q ss_pred hHHHHHHHH----HhccCCceEEEecC
Q 017460 267 TGMITTALQ----SCCDGWGLAVTLGV 289 (371)
Q Consensus 267 ~~~l~~~~~----~l~~~~G~~v~~g~ 289 (371)
. .++..++ .++++ ..++.++.
T Consensus 92 ~-~v~~vl~~l~~~l~~g-~iiId~st 116 (358)
T 4e21_A 92 A-VVDSMLQRMTPLLAAN-DIVIDGGN 116 (358)
T ss_dssp G-GHHHHHHHHGGGCCTT-CEEEECSS
T ss_pred H-HHHHHHHHHHhhCCCC-CEEEeCCC
Confidence 5 4444333 34443 44555543
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.042 Score=47.63 Aligned_cols=77 Identities=10% Similarity=0.160 Sum_probs=50.7
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHH---cCCCEEEEEcCChhhHHHH-HHc-----CCce---EeCCCCCCchHHHHHHHHh
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKA---RGASRIIGVDTNPEKCEKA-KAF-----GVTE---FLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~---~G~~~vi~~~~~~~~~~~~-~~l-----g~~~---vi~~~~~~~~~~~~v~~~~ 253 (371)
+.++||+|+ |++|.+.+..+.. .|+ +|+++++++++.+.+ +++ +... ..|..+ .+.+.+.+....
T Consensus 6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~ 83 (259)
T 1oaa_A 6 CAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT-EAGVQRLLSAVR 83 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS-HHHHHHHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC-HHHHHHHHHHHH
Confidence 578899986 8999998887776 899 999999998776554 222 3321 235541 233444444443
Q ss_pred C----CCcc--EEEEcCC
Q 017460 254 D----GGAD--YSFECIG 265 (371)
Q Consensus 254 ~----gg~d--vVid~~g 265 (371)
. +.+| ++|++.|
T Consensus 84 ~~~~~g~~d~~~lvnnAg 101 (259)
T 1oaa_A 84 ELPRPEGLQRLLLINNAA 101 (259)
T ss_dssp HSCCCTTCCEEEEEECCC
T ss_pred hccccccCCccEEEECCc
Confidence 2 3678 9999876
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.033 Score=48.49 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=63.3
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE--eCCCCCCchHHHHHHHHhCCCc
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF--LNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v--i~~~~~~~~~~~~v~~~~~gg~ 257 (371)
....+.++.+||-+|+|. |..++.+++. |+ +|++++.+++..+.+++.-.... .+.. +.+. .......+.|
T Consensus 39 ~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~--~~~~--~~~~~~~~~f 111 (261)
T 3iv6_A 39 FLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLL--DITA--EIPKELAGHF 111 (261)
T ss_dssp HTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEEC--CTTS--CCCGGGTTCC
T ss_pred HhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeee--eccc--ccccccCCCc
Confidence 556788999999999874 7777777764 77 99999999999998876432211 1111 0000 0001112479
Q ss_pred cEEEEcCCC--------hHHHHHHHHHhccCCceEEEe
Q 017460 258 DYSFECIGD--------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 258 dvVid~~g~--------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
|+|+-...- ...+....+++ ++ |+++..
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS 147 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS 147 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence 999875321 12466677788 97 988754
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.027 Score=49.45 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=60.4
Q ss_pred EEEEEcc-ChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+|||+|+ |.+|...+..+... |+ +|+++++++++.+.+...++..+ .|.. + .+.+.+... ++|+||.+.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~--d---~~~~~~~~~-~~d~vi~~a 73 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYG--D---EAALTSALQ-GVEKLLLIS 73 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTT--C---HHHHHHHTT-TCSEEEECC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCC--C---HHHHHHHHh-CCCEEEEeC
Confidence 4899986 99999999888777 88 89999998877666655565433 2443 2 233444433 689999988
Q ss_pred CCh-----HHHHHHHHHhccC-CceEEEecCCC
Q 017460 265 GDT-----GMITTALQSCCDG-WGLAVTLGVPK 291 (371)
Q Consensus 265 g~~-----~~l~~~~~~l~~~-~G~~v~~g~~~ 291 (371)
+.. ......++.+... -++++.+++..
T Consensus 74 ~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~ 106 (286)
T 2zcu_A 74 SSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH 106 (286)
T ss_dssp --------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 742 1223344444332 15788776543
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.061 Score=46.21 Aligned_cols=79 Identities=25% Similarity=0.296 Sum_probs=50.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC-ChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT-NPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~-~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.++++||+|+ |++|.+.+..+...|+ +|+++++ +.++.+.+ ++.+... ..|..+ .+...+.+.+...
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVAD-ADEVKAMIKEVVSQF 80 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 4678999985 9999999999989999 8887766 44544433 3445432 224441 2333333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|+++.+.|.
T Consensus 81 g~id~lv~nAg~ 92 (246)
T 3osu_A 81 GSLDVLVNNAGI 92 (246)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998874
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.16 Score=44.83 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=53.7
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|+.. . .+..+.+. ..|+||-++..+.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~-~------~~~~~~~~-----~~Dvvi~~vp~~~ 68 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQV-V------SSPADVAE-----KADRIITMLPTSI 68 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCEE-C------SSHHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee-c------CCHHHHHh-----cCCEEEEeCCCHH
Confidence 58899999999998888888898 8999999999988888777531 1 12222222 3689998886655
Q ss_pred HHHHHHH
Q 017460 269 MITTALQ 275 (371)
Q Consensus 269 ~l~~~~~ 275 (371)
.++..+.
T Consensus 69 ~~~~v~~ 75 (296)
T 2gf2_A 69 NAIEAYS 75 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=95.36 E-value=0.057 Score=46.11 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=50.3
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEE-EcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIG-VDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~-~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
|.++||+|+ |++|...++.+...|+ +|++ ..+++++.+.+ ++.+... ..|..+ .+.+.+.+.+... +
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence 467899986 9999999999989999 8888 47887765543 2334321 234441 2333333333322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 79 ~id~li~~Ag 88 (244)
T 1edo_A 79 TIDVVVNNAG 88 (244)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.055 Score=48.06 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=59.0
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.. . .+.. +... .|+||-++..+
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~------~~~~----~~~~--aDvvi~~vp~~ 81 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGATL-A------DSVA----DVAA--ADLIHITVLDD 81 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTCEE-C------SSHH----HHTT--SSEEEECCSSH
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCEE-c------CCHH----HHHh--CCEEEEECCCh
Confidence 579999999999998888888898 8999999999999888877642 1 1122 2222 78888888865
Q ss_pred HHHHHH----HHHhccCCceEEEec
Q 017460 268 GMITTA----LQSCCDGWGLAVTLG 288 (371)
Q Consensus 268 ~~l~~~----~~~l~~~~G~~v~~g 288 (371)
..++.. ...++++ ..++..+
T Consensus 82 ~~~~~v~~~l~~~l~~g-~ivv~~s 105 (296)
T 3qha_A 82 AQVREVVGELAGHAKPG-TVIAIHS 105 (296)
T ss_dssp HHHHHHHHHHHTTCCTT-CEEEECS
T ss_pred HHHHHHHHHHHHhcCCC-CEEEEeC
Confidence 444433 3334443 4444443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.082 Score=47.83 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=62.1
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++.++. ++++ +. .. .++.+.+. ..|+|+.++.
T Consensus 145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~-~~------~~l~ell~-----~aDvV~l~~p 208 (333)
T 1j4a_A 145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--LEKK-GY-YV------DSLDDLYK-----QADVISLHVP 208 (333)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHT-TC-BC------SCHHHHHH-----HCSEEEECSC
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHhh-Ce-ec------CCHHHHHh-----hCCEEEEcCC
Confidence 46799999999999999999999999 999999887765 3333 22 11 12333332 4799999887
Q ss_pred ChHH----H-HHHHHHhccCCceEEEecC
Q 017460 266 DTGM----I-TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 266 ~~~~----l-~~~~~~l~~~~G~~v~~g~ 289 (371)
.... + ...+..++++ +.++.++.
T Consensus 209 ~~~~t~~li~~~~l~~mk~g-a~lIn~ar 236 (333)
T 1j4a_A 209 DVPANVHMINDESIAKMKQD-VVIVNVSR 236 (333)
T ss_dssp CCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred CcHHHHHHHhHHHHhhCCCC-cEEEECCC
Confidence 5321 2 4567888886 88888865
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.052 Score=47.72 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=51.9
Q ss_pred CCCCEEEEEcc-C--hHHHHHHHHHHHcCCCEEEEEcCCh--hhHHHHHH-cCCceE--eCCCCCCchHHHHHHHHhC--
Q 017460 185 SKGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNP--EKCEKAKA-FGVTEF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g--~~G~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~-lg~~~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
-++.++||+|+ | ++|.+.+..+...|+ +|++++++. ++.+.+.+ .+-... .|..+ .+...+.+.+...
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 101 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVIS-DQEIKDLFVELGKVW 101 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTC-HHHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCC-HHHHHHHHHHHHHHc
Confidence 34789999984 4 499999888888999 999998887 45555533 332222 35441 2333333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+.+|++|.+.|.
T Consensus 102 g~id~li~nAg~ 113 (280)
T 3nrc_A 102 DGLDAIVHSIAF 113 (280)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 379999998873
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.082 Score=47.98 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=52.6
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHH-HcC---CceE-eCCCCCCchHHHHHHHHhCCCc
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAK-AFG---VTEF-LNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~-~lg---~~~v-i~~~~~~~~~~~~v~~~~~gg~ 257 (371)
-.+.+|||+|+ |.+|...+..+... |+.+|+++++++.+.+.+. .+. +..+ .|.. + .+.+.+... ++
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~--d---~~~l~~~~~-~~ 92 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVR--D---LERLNYALE-GV 92 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTT--C---HHHHHHHTT-TC
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCC--C---HHHHHHHHh-cC
Confidence 35789999986 99999988888777 8668999999988776553 332 2222 2443 2 233444443 79
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+||.+.+.
T Consensus 93 D~Vih~Aa~ 101 (344)
T 2gn4_A 93 DICIHAAAL 101 (344)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.043 Score=47.48 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=50.6
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
++++||+|+ +++|.+.+..+... |+ +|+.+.+++++.+.+ ++++... ..|..+ .....+.+.+... +++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i 79 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITE-DSVLKQLVNAAVKGHGKI 79 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHhcCCc
Confidence 568899985 89999887766555 46 899999998887665 3444322 235541 2233333333322 379
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+++++.|.
T Consensus 80 d~lvnnAg~ 88 (254)
T 3kzv_A 80 DSLVANAGV 88 (254)
T ss_dssp CEEEEECCC
T ss_pred cEEEECCcc
Confidence 999998874
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.034 Score=50.07 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh--HHHHHHc----CCceE-eCCCCCCchHHHHHHHHhCC
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAF----GVTEF-LNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~l----g~~~v-i~~~~~~~~~~~~v~~~~~g 255 (371)
.+++.+|||+|+ |.+|...+..+...|+ +|+++++++.+ ...++.+ ++..+ .|.. + .+.+.++..+
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d---~~~~~~~~~~ 84 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMA--D---ACSVQRAVIK 84 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTT--C---HHHHHHHHHH
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceEEEECCCC--C---HHHHHHHHHH
Confidence 467889999986 9999999998888898 99999887654 1233333 12211 2433 2 2234444444
Q ss_pred -CccEEEEcCCC
Q 017460 256 -GADYSFECIGD 266 (371)
Q Consensus 256 -g~dvVid~~g~ 266 (371)
++|+||.+.+.
T Consensus 85 ~~~d~Vih~A~~ 96 (335)
T 1rpn_A 85 AQPQEVYNLAAQ 96 (335)
T ss_dssp HCCSEEEECCSC
T ss_pred cCCCEEEECccc
Confidence 78999999874
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.073 Score=47.01 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHhCC
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~~g 255 (371)
.+.++.+||-+|+| .|..+..+++..|+ +|++++.++...+.+++ .|.. .++... ...+ .+.++
T Consensus 79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d--~~~~-----~~~~~ 149 (297)
T 2o57_A 79 VLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS--FLEI-----PCEDN 149 (297)
T ss_dssp CCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC--TTSC-----SSCTT
T ss_pred CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcC--cccC-----CCCCC
Confidence 77889999999987 47778888887788 99999999988777644 3321 222111 0110 01123
Q ss_pred CccEEEEcCCC------hHHHHHHHHHhccCCceEEEec
Q 017460 256 GADYSFECIGD------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 256 g~dvVid~~g~------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.||+|+....- ...+..+.+.|+++ |+++...
T Consensus 150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 187 (297)
T 2o57_A 150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITD 187 (297)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence 79999875332 23588889999997 9988764
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.036 Score=48.03 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=49.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce---EeCCCCCCchHHHHHHHHh-CCCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE---FLNPNDNNEPVQQVIKRIT-DGGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~---vi~~~~~~~~~~~~v~~~~-~gg~dvV 260 (371)
.++++||+|+ +++|.+.+..+...|+ +|++++++.++ ..++++... ..|..+ .+.....+.... -+++|++
T Consensus 8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~g~id~l 83 (257)
T 3tl3_A 8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGED--VVADLGDRARFAAADVTD-EAAVASALDLAETMGTLRIV 83 (257)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHH--HHHHTCTTEEEEECCTTC-HHHHHHHHHHHHHHSCEEEE
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHH--HHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhCCCCEE
Confidence 3678999986 8999999988888899 99999885543 344555432 235441 222222222221 2489999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|++.|.
T Consensus 84 v~nAg~ 89 (257)
T 3tl3_A 84 VNCAGT 89 (257)
T ss_dssp EECGGG
T ss_pred EECCCC
Confidence 999873
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.056 Score=47.79 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=51.9
Q ss_pred CCCCEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc----CCc-eEeCCCCCCchHHHHHHHHhCCCc
Q 017460 185 SKGSTVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----GVT-EFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 185 ~~~~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g~~-~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
-++.++||+| +|++|.+.+..+...|+ +|+++.++.++.+.+ +++ ++. ...|.. +. +.+.+... .+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~--~~---~~~~~~~~-~~ 189 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETA--DD---ASRAEAVK-GA 189 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECC--SH---HHHHHHTT-TC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCC--CH---HHHHHHHH-hC
Confidence 3578999998 69999999999999999 799999998776644 222 322 223443 21 23333322 58
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|++|+++|.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 999999973
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.051 Score=48.77 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=62.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC--------c--eEeCCCCCCchHHHHHHHHhC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--------T--EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--------~--~vi~~~~~~~~~~~~v~~~~~ 254 (371)
.++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-. . .++ ..+..+.+.. ..
T Consensus 107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~-----~~D~~~~l~~-~~ 179 (314)
T 2b2c_A 107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF-----CGDGFEFLKN-HK 179 (314)
T ss_dssp SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEE-----CSCHHHHHHH-CT
T ss_pred CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEE-----EChHHHHHHh-cC
Confidence 4568999998764 6667777776654599999999998888876321 1 122 1233333333 33
Q ss_pred CCccEEEEcCCC----------hHHHHHHHHHhccCCceEEEec
Q 017460 255 GGADYSFECIGD----------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 255 gg~dvVid~~g~----------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.||+|+--... ...++.+.+.|+++ |.++.-.
T Consensus 180 ~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~ 222 (314)
T 2b2c_A 180 NEFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG 222 (314)
T ss_dssp TCEEEEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred CCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence 489998853321 24577888999997 9988753
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.019 Score=49.85 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=48.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
++ +++|+|+|++|.+++..+...|+++|+++.|+.+|.+.+. +++. ... .+..+.+. ++|+||+++
T Consensus 108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~----~~~~~~~~-----~aDiVInat 174 (253)
T 3u62_A 108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL----DQLDEVVK-----KAKSLFNTT 174 (253)
T ss_dssp CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG----GGHHHHHH-----TCSEEEECS
T ss_pred CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH----HHHHhhhc-----CCCEEEECC
Confidence 46 9999999999999999999999888999999988765542 2321 111 12222221 589999988
Q ss_pred CC
Q 017460 265 GD 266 (371)
Q Consensus 265 g~ 266 (371)
+.
T Consensus 175 p~ 176 (253)
T 3u62_A 175 SV 176 (253)
T ss_dssp ST
T ss_pred CC
Confidence 53
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.084 Score=47.99 Aligned_cols=90 Identities=26% Similarity=0.315 Sum_probs=61.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++.++. ..+++|+..+. ++.+.+. ..|+|+-++.
T Consensus 167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~~-------~l~ell~-----~aDvV~l~~P 232 (347)
T 1mx3_A 167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRVS-------TLQDLLF-----HSDCVTLHCG 232 (347)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEECS-------SHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh-hHhhcCCeecC-------CHHHHHh-----cCCEEEEcCC
Confidence 57899999999999999999999999 999998876542 34556763211 2222222 3688888775
Q ss_pred ChH----HH-HHHHHHhccCCceEEEecCC
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g~~ 290 (371)
... .+ ...+..++++ ..+|.++..
T Consensus 233 ~t~~t~~li~~~~l~~mk~g-ailIN~arg 261 (347)
T 1mx3_A 233 LNEHNHHLINDFTVKQMRQG-AFLVNTARG 261 (347)
T ss_dssp CCTTCTTSBSHHHHTTSCTT-EEEEECSCT
T ss_pred CCHHHHHHhHHHHHhcCCCC-CEEEECCCC
Confidence 421 12 4566777776 777777643
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.041 Score=49.61 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=49.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHH----HHH-cCC-ceEe--CCCCCCchHHHHHHHHhC-C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEK----AKA-FGV-TEFL--NPNDNNEPVQQVIKRITD-G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~----~~~-lg~-~~vi--~~~~~~~~~~~~v~~~~~-g 255 (371)
.+.+|||+|+ |.+|...++.+...|+ +|++++++.++... +.+ .+. ..++ |.. +. +.+.++.. +
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~---~~~~~~~~~~ 77 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDVS--DE---RALARIFDAH 77 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTT--CH---HHHHHHHHHS
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecC--CH---HHHHHHHhcc
Confidence 4678999986 9999999999988999 99999886654322 221 122 1222 333 22 23333333 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+||.+.+.
T Consensus 78 ~~d~vih~A~~ 88 (341)
T 3enk_A 78 PITAAIHFAAL 88 (341)
T ss_dssp CCCEEEECCCC
T ss_pred CCcEEEECccc
Confidence 89999999874
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.059 Score=46.42 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=48.4
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHH----HHcCCce-E--eCCCCCCchHHH---HHHHH
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE-F--LNPNDNNEPVQQ---VIKRI 252 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~-v--i~~~~~~~~~~~---~v~~~ 252 (371)
-+++++||+|+ +++|.+.+..+...|+ +|+++ .++.++.+.+ ++.+... . .|..+ ...... .+.+.
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES-LHGVEALYSSLDNE 82 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCC-HHHHHHHHHHHHHH
Confidence 35789999986 8999999999989999 88775 5655554433 3344322 2 24331 112222 22211
Q ss_pred h----C-CCccEEEEcCCC
Q 017460 253 T----D-GGADYSFECIGD 266 (371)
Q Consensus 253 ~----~-gg~dvVid~~g~ 266 (371)
. + +.+|++|.+.|.
T Consensus 83 ~~~~~~~~~id~lv~nAg~ 101 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGI 101 (255)
T ss_dssp HHHHHSSSCEEEEEECCCC
T ss_pred hcccccCCcccEEEECCCC
Confidence 1 1 259999998874
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.043 Score=49.38 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc-----C--CceE--eCCCCCCchHHHHHHHHh
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-----G--VTEF--LNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-----g--~~~v--i~~~~~~~~~~~~v~~~~ 253 (371)
..++.+|||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+. + +..+ .|..+ ... +.++.
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~----~~~~~ 81 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK-QGA----YDEVI 81 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS-TTT----TTTTT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC-hHH----HHHHH
Confidence 345789999986 9999999998888898 999999988776544321 2 2222 24431 111 22222
Q ss_pred CCCccEEEEcCCC
Q 017460 254 DGGADYSFECIGD 266 (371)
Q Consensus 254 ~gg~dvVid~~g~ 266 (371)
. ++|+||.+.+.
T Consensus 82 ~-~~d~vih~A~~ 93 (342)
T 1y1p_A 82 K-GAAGVAHIASV 93 (342)
T ss_dssp T-TCSEEEECCCC
T ss_pred c-CCCEEEEeCCC
Confidence 2 79999998863
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.031 Score=48.43 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++++.+. +.. ..|..+ .+.+.+.+.+... +++|++|
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~Dl~d-~~~v~~~~~~~~~~~g~iD~lv 92 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG-----FLAVKCDITD-TEQVEQAYKEIEETHGPVEVLI 92 (253)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----SEEEECCTTS-HHHHHHHHHHHHHHTCSCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc-----ceEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 3678999986 9999999999888999 99999887765322 211 234441 2233333333322 3789999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 93 ~nAg~ 97 (253)
T 2nm0_A 93 ANAGV 97 (253)
T ss_dssp EECSC
T ss_pred ECCCC
Confidence 98873
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.13 Score=46.79 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=60.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhH--HHHHHc-CCceE-eC-CCCCCchHHHHHHHHhCCCccEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC--EKAKAF-GVTEF-LN-PNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~--~~~~~l-g~~~v-i~-~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
+.+|||+|+ |.+|...+..+...|+ +|+++++++++. +.+.+. ++..+ .| .. +. +.+.+... ++|+|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~--d~---~~l~~~~~-~~d~V 77 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLN--NV---PLMDTLFE-GAHLA 77 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTEEEEESCCTT--CH---HHHHHHHT-TCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCChhhHHHHhhcCCcEEEECCccC--CH---HHHHHHHh-cCCEE
Confidence 467999986 9999999988888898 899998887664 333333 33322 24 43 22 23333333 68999
Q ss_pred EEcCCCh-----HHHHHHHHHhccC--CceEEEecCC
Q 017460 261 FECIGDT-----GMITTALQSCCDG--WGLAVTLGVP 290 (371)
Q Consensus 261 id~~g~~-----~~l~~~~~~l~~~--~G~~v~~g~~ 290 (371)
|.+.+.. .....+++.+... -+++|.+++.
T Consensus 78 i~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~ 114 (352)
T 1xgk_A 78 FINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114 (352)
T ss_dssp EECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 9777542 1123444444432 1488887764
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.014 Score=51.45 Aligned_cols=70 Identities=7% Similarity=0.063 Sum_probs=48.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+.+++|+|+|++|.+++..+...|+++|+++.|+.++.+.+.+ .. ... .+. .+.+.. ..+|+||++++
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-~~-~~~-------~~~-~~~~~~-~~aDiVInaTp 184 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL-NI-NKI-------NLS-HAESHL-DEFDIIINTTP 184 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS-CC-EEE-------CHH-HHHHTG-GGCSEEEECCC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-hc-ccc-------cHh-hHHHHh-cCCCEEEECcc
Confidence 57899999999999999999999998789999999887544422 11 111 121 222221 26899999987
Q ss_pred C
Q 017460 266 D 266 (371)
Q Consensus 266 ~ 266 (371)
.
T Consensus 185 ~ 185 (277)
T 3don_A 185 A 185 (277)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.084 Score=46.75 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=51.2
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc-------CCceEeCCCCCCchHHHHHHHHhCCCc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-------GVTEFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-------g~~~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
..-++|.|+|+|.+|...++.+. .|+ .|++.++++++++.+.+. ++...-+.. . + .++
T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~----~----~-----~~a 74 (293)
T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQIPEELLSKIEFTTTLE----K----V-----KDC 74 (293)
T ss_dssp --CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCT----T----G-----GGC
T ss_pred cCCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHH----H----H-----cCC
Confidence 34578999999999988777777 899 999999999999888665 222111111 0 1 168
Q ss_pred cEEEEcCCChHHHH
Q 017460 258 DYSFECIGDTGMIT 271 (371)
Q Consensus 258 dvVid~~g~~~~l~ 271 (371)
|+||+++..+..+.
T Consensus 75 DlVieavpe~~~vk 88 (293)
T 1zej_A 75 DIVMEAVFEDLNTK 88 (293)
T ss_dssp SEEEECCCSCHHHH
T ss_pred CEEEEcCcCCHHHH
Confidence 99999998765433
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.015 Score=50.04 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=46.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHH-----HHHHhC--CCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQV-----IKRITD--GGA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~-----v~~~~~--gg~ 257 (371)
.++++||+|+ |++|.+.++.+.. |+ +|+++++++++.+.+.+..-...+.. ++.+. +.+... +++
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~-----D~~~~~~~~~~~~~~~~~~~i 76 (245)
T 3e9n_A 4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIES-----DIVKEVLEEGGVDKLKNLDHV 76 (245)
T ss_dssp --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEEC-----CHHHHHHTSSSCGGGTTCSCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceec-----ccchHHHHHHHHHHHHhcCCC
Confidence 3678999986 8999987777655 88 89999999988877766432223322 12111 111112 279
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|++|.+.|.
T Consensus 77 d~lv~~Ag~ 85 (245)
T 3e9n_A 77 DTLVHAAAV 85 (245)
T ss_dssp SEEEECC--
T ss_pred CEEEECCCc
Confidence 999999874
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.056 Score=47.93 Aligned_cols=92 Identities=13% Similarity=0.180 Sum_probs=58.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh-------hhHHHH---HHcCCceE-eCCCCCCchHHHHHHHHhC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-------EKCEKA---KAFGVTEF-LNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~-------~~~~~~---~~lg~~~v-i~~~~~~~~~~~~v~~~~~ 254 (371)
+.+|||+|+ |.+|...+..+...|. +|+++++++ ++.+.+ ...++..+ .|.. + .+.+.+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~--d---~~~l~~~~~ 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIN--D---HETLVKAIK 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTT--C---HHHHHHHHT
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCC--C---HHHHHHHHh
Confidence 357999986 9999999988888898 899998886 555443 33465433 3443 2 233444433
Q ss_pred CCccEEEEcCCCh--HHHHHHHHHhccC--CceEE
Q 017460 255 GGADYSFECIGDT--GMITTALQSCCDG--WGLAV 285 (371)
Q Consensus 255 gg~dvVid~~g~~--~~l~~~~~~l~~~--~G~~v 285 (371)
++|+||.+.+.. .....+++.+... -.+++
T Consensus 76 -~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 109 (307)
T 2gas_A 76 -QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF 109 (307)
T ss_dssp -TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred -CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence 699999998752 1223344444432 14665
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.067 Score=47.10 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=49.1
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
+|.|+|+|.+|...+..+.. |. +|++.++++++.+.+.+.|... .+. . +.. ..+|+||.|+..+.
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~~~-~~~---~--------~~~-~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFGSE-AVP---L--------ERV-AEARVIFTCLPTTR 67 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHCCE-ECC---G--------GGG-GGCSEEEECCSSHH
T ss_pred eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCCcc-cCH---H--------HHH-hCCCEEEEeCCChH
Confidence 58899999999987777777 98 8999999999888776656432 111 1 011 14788888887654
Q ss_pred HHHHHH
Q 017460 269 MITTAL 274 (371)
Q Consensus 269 ~l~~~~ 274 (371)
.++..+
T Consensus 68 ~~~~v~ 73 (289)
T 2cvz_A 68 EVYEVA 73 (289)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.079 Score=47.11 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=48.5
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
.+|||+|+ |.+|...+..+...|. +|+++++++.+.+ +. ++. ++.. +-. .+.+.+... ++|+||.+.+.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~-~~~~---Dl~-~~~~~~~~~-~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYE-YRVS---DYT-LEDLINQLN-DVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCE-EEEC---CCC-HHHHHHHTT-TCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceE-EEEc---ccc-HHHHHHhhc-CCCEEEEcccc
Confidence 58999986 9999999999999999 9999999855554 43 443 2222 223 556666554 89999998874
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.084 Score=48.29 Aligned_cols=89 Identities=24% Similarity=0.230 Sum_probs=63.6
Q ss_pred CEEEEEccChHHHHHHHHHHHc-CCCEEEE-EcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKAR-GASRIIG-VDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~-G~~~vi~-~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
-+|.|+|.|.+|...+..++.. ++ ++++ .++++++.+.++++|+. ++ .++.+.+. ...+|+|+.|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~-~~------~~~~~ll~---~~~~D~V~i~tp 74 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLK-IY------ESYEAVLA---DEKVDAVLIATP 74 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCC-BC------SCHHHHHH---CTTCCEEEECSC
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCc-ee------CCHHHHhc---CCCCCEEEEcCC
Confidence 4689999999998877777766 67 6654 57888888877778863 22 23333332 127999999999
Q ss_pred ChHHHHHHHHHhccCCceEEEecC
Q 017460 266 DTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.....+.+..++.. |+-|++.-
T Consensus 75 ~~~h~~~~~~al~a--GkhVl~EK 96 (359)
T 3e18_A 75 NDSHKELAISALEA--GKHVVCEK 96 (359)
T ss_dssp GGGHHHHHHHHHHT--TCEEEEES
T ss_pred cHHHHHHHHHHHHC--CCCEEeeC
Confidence 87778888888886 55566643
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.092 Score=45.62 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=51.0
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCCh---hhHHHHH-HcCCceE--eCCCCCCchHHHHHHHHhCC-
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNP---EKCEKAK-AFGVTEF--LNPNDNNEPVQQVIKRITDG- 255 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~---~~~~~~~-~lg~~~v--i~~~~~~~~~~~~v~~~~~g- 255 (371)
.+.++||+|+ |++|.+.+..+...|+ +|+++++++ +..+.+. +.+.... .|..+ .+.+.+.+.+....
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE-DASIDTMFAELGKVW 85 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 4678999984 6999999998888999 999998876 2333332 2333222 35541 23344444444333
Q ss_pred -CccEEEEcCC
Q 017460 256 -GADYSFECIG 265 (371)
Q Consensus 256 -g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 86 g~iD~lv~~Ag 96 (265)
T 1qsg_A 86 PKFDGFVHSIG 96 (265)
T ss_dssp SSEEEEEECCC
T ss_pred CCCCEEEECCC
Confidence 7999999887
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.064 Score=46.39 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=64.9
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc----CCc--eEeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT--EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~--~vi~~~~~~~~~~~~v~~~~ 253 (371)
+.....++.+||-+|+| .|..+..+++. +. +|++++.+++..+.+++. |.. .++..+ ...+ .+.
T Consensus 31 ~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d--~~~l-----~~~ 100 (260)
T 1vl5_A 31 QIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGD--AEQM-----PFT 100 (260)
T ss_dssp HHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC--C-CC-----CSC
T ss_pred HHhCCCCCCEEEEEeCC-CCHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEec--HHhC-----CCC
Confidence 44456789999999987 46777777765 45 999999999888777543 322 122111 1110 012
Q ss_pred CCCccEEEEcCCC------hHHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADYSFECIGD------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dvVid~~g~------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
++.||+|+....- ...+..+.+.|+++ |+++...
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~ 140 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD 140 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence 2379999976432 24688889999997 9988763
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.18 Score=45.33 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=58.1
Q ss_pred EEEEEccChHHHHH-HHHHHHcCCCEEE-EEcCChhhHHH-HHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcC
Q 017460 189 TVVIFGLGTVGLSV-AQGAKARGASRII-GVDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECI 264 (371)
Q Consensus 189 ~VlI~Gag~~G~~a-i~la~~~G~~~vi-~~~~~~~~~~~-~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~ 264 (371)
+|.|+|+|.+|... +..++..++ +++ +.++++++.+. ++++|...++ .++. ++... .+|+|+.++
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~-~~vav~d~~~~~~~~~~~~~g~~~~~------~~~~----~~l~~~~~D~V~i~t 70 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGG-EVVSMMSTSAERGAAYATENGIGKSV------TSVE----ELVGDPDVDAVYVST 70 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTC-EEEEEECSCHHHHHHHHHHTTCSCCB------SCHH----HHHTCTTCCEEEECS
T ss_pred eEEEEcccHHHHHhhhHHhhcCCC-eEEEEECCCHHHHHHHHHHcCCCccc------CCHH----HHhcCCCCCEEEEeC
Confidence 58899999999875 543333777 655 56778877655 4667764222 1232 23333 799999999
Q ss_pred CChHHHHHHHHHhccCCceEEEec
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
......+.+..++.. |+-+.+.
T Consensus 71 p~~~h~~~~~~al~~--Gk~v~~e 92 (332)
T 2glx_A 71 TNELHREQTLAAIRA--GKHVLCE 92 (332)
T ss_dssp CGGGHHHHHHHHHHT--TCEEEEC
T ss_pred ChhHhHHHHHHHHHC--CCeEEEe
Confidence 977677777788876 5655564
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.075 Score=48.09 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~ 232 (371)
.|.+|.|+|.|.+|...++.++..|. +|++.+++.++ +.+.++|+
T Consensus 145 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~ 189 (333)
T 2d0i_A 145 YGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELKA 189 (333)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHTE
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence 47899999999999999999999999 99999998876 45555554
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.052 Score=47.03 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=30.0
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
+.+|+|+|+|++|..++..+...|++++..++.+
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5789999999999999999999999888888654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.12 Score=48.28 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=69.4
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
+...+.++.+||-+|+|. |..+..+++ .|. +|+.++.+++..+.+++.+.......- .....+.+. ...+.||+
T Consensus 101 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~--~~~~~~~l~-~~~~~fD~ 174 (416)
T 4e2x_A 101 ATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFF--EKATADDVR-RTEGPANV 174 (416)
T ss_dssp HTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCC--SHHHHHHHH-HHHCCEEE
T ss_pred HHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeee--chhhHhhcc-cCCCCEEE
Confidence 555677899999998764 555556655 487 999999999999999888765443321 122222222 22358999
Q ss_pred EEEcCCC------hHHHHHHHHHhccCCceEEEe
Q 017460 260 SFECIGD------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 260 Vid~~g~------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
|+....- ...++.+.+.|+++ |.++..
T Consensus 175 I~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~ 207 (416)
T 4e2x_A 175 IYAANTLCHIPYVQSVLEGVDALLAPD-GVFVFE 207 (416)
T ss_dssp EEEESCGGGCTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEECChHHhcCCHHHHHHHHHHHcCCC-eEEEEE
Confidence 9864431 23578888999997 998864
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.061 Score=46.31 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=67.2
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHh
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~ 253 (371)
...++++.+||-+|+|. |..+..+++..+. +|++++.++...+.+++ .|.. .++..+ ..++ ...
T Consensus 41 l~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d--~~~~-----~~~ 111 (257)
T 3f4k_A 41 INELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGS--MDNL-----PFQ 111 (257)
T ss_dssp SCCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC--TTSC-----SSC
T ss_pred HhcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECC--hhhC-----CCC
Confidence 34678899999999875 8888899998887 99999999988877644 3432 222111 1111 011
Q ss_pred CCCccEEEEc-----CCChHHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADYSFEC-----IGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dvVid~-----~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.||+|+.. .+....++.+.+.|+++ |+++...
T Consensus 112 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~ 150 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNIGFERGMNEWSKYLKKG-GFIAVSE 150 (257)
T ss_dssp TTCEEEEEEESCSCCCCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred CCCEEEEEecChHhhcCHHHHHHHHHHHcCCC-cEEEEEE
Confidence 2379999753 22234678888999997 9988764
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.038 Score=46.06 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=63.6
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC----ceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV----TEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~----~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
+.++.+||.+|+|. |..+..+++. |..+|++++.++...+.+++... ..++..+ ...+ .+..+.+|+
T Consensus 40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d--~~~~-----~~~~~~fD~ 110 (215)
T 2pxx_A 40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMD--VRKL-----DFPSASFDV 110 (215)
T ss_dssp CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECC--TTSC-----CSCSSCEEE
T ss_pred cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcc--hhcC-----CCCCCcccE
Confidence 47789999999875 7777777766 54489999999999888876432 1222111 1111 112237999
Q ss_pred EEEcCC---------------------ChHHHHHHHHHhccCCceEEEecC
Q 017460 260 SFECIG---------------------DTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 260 Vid~~g---------------------~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
|+.... ....++.+.+.|+++ |+++....
T Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~ 160 (215)
T 2pxx_A 111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTS 160 (215)
T ss_dssp EEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred EEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeC
Confidence 996321 124577888899997 99988754
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.028 Score=47.65 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=66.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-eEeCCCCCCchHHHHHHHHh-CCCccEEE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-EFLNPNDNNEPVQQVIKRIT-DGGADYSF 261 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-~vi~~~~~~~~~~~~v~~~~-~gg~dvVi 261 (371)
++++.+||-+|+|. |..+..+++. |+ +|++++.++...+.+++.... .++..+- ...+ ... .+.||+|+
T Consensus 46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~-----~~~~~~~fD~v~ 116 (226)
T 3m33_A 46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNG-KGEL-----PAGLGAPFGLIV 116 (226)
T ss_dssp CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCS-CSSC-----CTTCCCCEEEEE
T ss_pred CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcch-hhcc-----CCcCCCCEEEEE
Confidence 46789999999874 6677777776 77 999999999999988765321 2221110 0000 012 34899999
Q ss_pred EcCCChHHHHHHHHHhccCCceEEEecC
Q 017460 262 ECIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 262 d~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
....-...+..+.+.|+++ |+++..+.
T Consensus 117 ~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 143 (226)
T 3m33_A 117 SRRGPTSVILRLPELAAPD-AHFLYVGP 143 (226)
T ss_dssp EESCCSGGGGGHHHHEEEE-EEEEEEES
T ss_pred eCCCHHHHHHHHHHHcCCC-cEEEEeCC
Confidence 8766556788999999998 99985443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.07 Score=45.13 Aligned_cols=98 Identities=15% Similarity=0.224 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCC-ceEeCCCCCCchHHHHHHHHhCCC
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGV-TEFLNPNDNNEPVQQVIKRITDGG 256 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~-~~vi~~~~~~~~~~~~v~~~~~gg 256 (371)
..++++++||-+|+|..|..++.+++..+. +|++++.+++..+.+++ .+. ..++..+ ...+ ..+..+.
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d--~~~~----~~~~~~~ 123 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSN--GGII----KGVVEGT 123 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECS--SCSS----TTTCCSC
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCC--chhh----hhcccCc
Confidence 346789999999988668888888877666 99999999998777743 443 1222221 0000 1122247
Q ss_pred ccEEEEcCCC-------------------------hHHHHHHHHHhccCCceEEEe
Q 017460 257 ADYSFECIGD-------------------------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 257 ~dvVid~~g~-------------------------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
||+|+-...- ...++.+.+.|+++ |+++.+
T Consensus 124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 178 (230)
T 3evz_A 124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALY 178 (230)
T ss_dssp EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEE
Confidence 9999854210 23577778889997 998875
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.081 Score=45.17 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCC------EEEEEcCChhhHHHHH-H---cCCc-eE--eCCCCCCchHHHHHHHH
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGAS------RIIGVDTNPEKCEKAK-A---FGVT-EF--LNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~------~vi~~~~~~~~~~~~~-~---lg~~-~v--i~~~~~~~~~~~~v~~~ 252 (371)
+.++||+|+ |++|.+.+..+...|+. +|+++++++++.+.+. + .+.. .. .|..+ ...+...+.+.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~ 80 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHI 80 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC-HHHHHHHHHHH
Confidence 467999986 99999988888778874 7888989887765542 2 2432 12 34441 22333333333
Q ss_pred hC--CCccEEEEcCC
Q 017460 253 TD--GGADYSFECIG 265 (371)
Q Consensus 253 ~~--gg~dvVid~~g 265 (371)
.. +++|++|.+.|
T Consensus 81 ~~~~g~id~li~~Ag 95 (244)
T 2bd0_A 81 VERYGHIDCLVNNAG 95 (244)
T ss_dssp HHHTSCCSEEEECCC
T ss_pred HHhCCCCCEEEEcCC
Confidence 22 37999999887
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.031 Score=48.03 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=44.0
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
++|||+|+ |.+|...+..+...|+ +|+++++++++.+. ....|..+ ...+.+.+.++ .+++|+||.+.|.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~~~D~~~-~~~~~~~~~~~-~~~~d~vi~~Ag~ 72 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIEA------DLSTPGGR-ETAVAAVLDRC-GGVLDGLVCCAGV 72 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH-HHHHHHHHHHH-TTCCSEEEECCCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHccc------cccCCccc-HHHHHHHHHHc-CCCccEEEECCCC
Confidence 36899986 9999999988888999 99999887654311 10011110 11122222222 2589999998874
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.11 Score=43.56 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=66.1
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHH-HhCC-CccE
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKR-ITDG-GADY 259 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~-~~~g-g~dv 259 (371)
....++.+||-+|+|. |..+..+++. |+ +|++++.++...+.+++.+...+... ++.+.... ...+ .||+
T Consensus 48 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 48 ILGRQPERVLDLGCGE-GWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHLA-----SYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHTCCSEEEEETCTT-CHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEEC-----CHHHHHTTCSCCCCCEEE
T ss_pred hhcCCCCEEEEeCCCC-CHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccchh-----hHHhhcccccccCCCccE
Confidence 3445678999998764 5666666666 88 99999999999999988744333322 12221111 1223 5999
Q ss_pred EEEcCC-----ChHHHHHHHHHhccCCceEEEecC
Q 017460 260 SFECIG-----DTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 260 Vid~~g-----~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
|+.... -...++.+.+.|+++ |.++....
T Consensus 120 v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 153 (227)
T 3e8s_A 120 ICANFALLHQDIIELLSAMRTLLVPG-GALVIQTL 153 (227)
T ss_dssp EEEESCCCSSCCHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred EEECchhhhhhHHHHHHHHHHHhCCC-eEEEEEec
Confidence 987432 224688889999997 99887643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.08 Score=46.86 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=36.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
.++.+||-+|+|. |..++.+++..+..+|++++.++.-.+.+++.
T Consensus 45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~ 89 (292)
T 3g07_A 45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQN 89 (292)
T ss_dssp TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHHT
T ss_pred cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 4678999999874 77888888887655999999999988887653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.093 Score=45.62 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=67.3
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~ 251 (371)
.+...+.++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++ .|.. .++..+ ..++ .
T Consensus 54 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d--~~~~-----~ 124 (273)
T 3bus_A 54 IALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYAD--AMDL-----P 124 (273)
T ss_dssp HHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC--TTSC-----C
T ss_pred HHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECc--cccC-----C
Confidence 3566788999999999875 7778888887888 99999999988777654 3421 222111 1010 0
Q ss_pred HhCCCccEEEEcCC-----C-hHHHHHHHHHhccCCceEEEec
Q 017460 252 ITDGGADYSFECIG-----D-TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 252 ~~~gg~dvVid~~g-----~-~~~l~~~~~~l~~~~G~~v~~g 288 (371)
...+.||+|+..-. . ...++.+.+.|+++ |+++...
T Consensus 125 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 166 (273)
T 3bus_A 125 FEDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIAD 166 (273)
T ss_dssp SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence 11237999985321 1 23578888899997 9987654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.068 Score=46.77 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=50.6
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCChh---hHHHHH-HcCCce--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKAK-AFGVTE--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~~---~~~~~~-~lg~~~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++++++ ..+.++ +.+... ..|..+ .....+.+.+...
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK-EEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4688999984 7999999998888899 9999988875 333332 234222 235541 2233333333322
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 83 g~id~lv~nAg 93 (275)
T 2pd4_A 83 GSLDFIVHSVA 93 (275)
T ss_dssp SCEEEEEECCC
T ss_pred CCCCEEEECCc
Confidence 37999999887
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.096 Score=46.67 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCC-CccEE
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDG-GADYS 260 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~g-g~dvV 260 (371)
.++..+|||+|+ |.+|...++.+...|+ +|+++++++.+ +. +++..+ .|.. + .+.+.++..+ ++|+|
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-~~---l~~~~~~~Dl~--d---~~~~~~~~~~~~~d~v 78 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNEA-KL---PNVEMISLDIM--D---SQRVKKVISDIKPDYI 78 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTTC-CC---TTEEEEECCTT--C---HHHHHHHHHHHCCSEE
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCcc-cc---ceeeEEECCCC--C---HHHHHHHHHhcCCCEE
Confidence 455678999986 9999999999888998 99999888765 21 233222 2443 2 2233333333 69999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|.+.+.
T Consensus 79 ih~A~~ 84 (321)
T 2pk3_A 79 FHLAAK 84 (321)
T ss_dssp EECCSC
T ss_pred EEcCcc
Confidence 999874
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.088 Score=45.64 Aligned_cols=79 Identities=22% Similarity=0.407 Sum_probs=50.5
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCChh---hHHHHH-HcCCceE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKAK-AFGVTEF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~~---~~~~~~-~lg~~~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
.+.++||+|+ |++|.+.++.+...|+ +|++++++++ ..+.+. +.+.... .|..+ .+.+.+.+.+...
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 84 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ-DEELDALFAGVKEAF 84 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4678999984 6999998888888899 9999988875 233332 2342222 35541 2233333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|++|++.|.
T Consensus 85 g~iD~lv~~Ag~ 96 (261)
T 2wyu_A 85 GGLDYLVHAIAF 96 (261)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.038 Score=50.24 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=49.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc----CCceE-eCCCCCCchHHHHHHHHhCC-Ccc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----GVTEF-LNPNDNNEPVQQVIKRITDG-GAD 258 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g~~~v-i~~~~~~~~~~~~v~~~~~g-g~d 258 (371)
+.+|||+|+ |.+|...+..+...|+ +|+++++++.+...+ +.+ ++..+ .|.. +. +.+.++..+ ++|
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~---~~~~~~~~~~~~d 82 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIR--DQ---NKLLESIREFQPE 82 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTT--CH---HHHHHHHHHHCCS
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCceEEEEcccc--CH---HHHHHHHHhcCCC
Confidence 578999986 9999999998888998 999998877553322 221 22222 2443 22 233333334 699
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
+||.+.+
T Consensus 83 ~vih~A~ 89 (357)
T 1rkx_A 83 IVFHMAA 89 (357)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999987
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.1 Score=46.15 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=49.2
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh------hhHHHHH---HcCCceE-eCCCCCCchHHHHHHHHhCC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP------EKCEKAK---AFGVTEF-LNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~------~~~~~~~---~lg~~~v-i~~~~~~~~~~~~v~~~~~g 255 (371)
..+|||+|+ |.+|...+..+...|. +|++++++. ++.+.++ ..|+..+ .|.. +. +.+.+...
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~--d~---~~l~~~~~- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID--DH---ASLVEAVK- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTT--CH---HHHHHHHH-
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccC--CH---HHHHHHHc-
Confidence 357999996 9999999999988998 899998873 3444333 3455433 2443 21 23333332
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+||.+.+.
T Consensus 77 ~~d~vi~~a~~ 87 (308)
T 1qyc_A 77 NVDVVISTVGS 87 (308)
T ss_dssp TCSEEEECCCG
T ss_pred CCCEEEECCcc
Confidence 69999999875
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.064 Score=48.62 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=56.5
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh----hhHHHH---HHcCCceE-eCCCCCCchHHHHHHHHhCC-C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----EKCEKA---KAFGVTEF-LNPNDNNEPVQQVIKRITDG-G 256 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~----~~~~~~---~~lg~~~v-i~~~~~~~~~~~~v~~~~~g-g 256 (371)
..+|||+|+ |.+|...+..+...|. +|+++++++ ++.+.+ ...++..+ .|.. + .+.+.+.... +
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~--d---~~~l~~~~~~~~ 83 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLIN--E---QEAMEKILKEHE 83 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTT--C---HHHHHHHHHHTT
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecC--C---HHHHHHHHhhCC
Confidence 357999997 9999999999988898 899998876 455433 34466433 2443 2 2333443333 7
Q ss_pred ccEEEEcCCChH--HHHHHHHHhcc
Q 017460 257 ADYSFECIGDTG--MITTALQSCCD 279 (371)
Q Consensus 257 ~dvVid~~g~~~--~l~~~~~~l~~ 279 (371)
+|+||.+.+... ....+++.++.
T Consensus 84 ~d~Vi~~a~~~n~~~~~~l~~aa~~ 108 (346)
T 3i6i_A 84 IDIVVSTVGGESILDQIALVKAMKA 108 (346)
T ss_dssp CCEEEECCCGGGGGGHHHHHHHHHH
T ss_pred CCEEEECCchhhHHHHHHHHHHHHH
Confidence 999999998532 22344455444
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.097 Score=46.04 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=50.3
Q ss_pred CCCEEEEEcc---ChHHHHHHHHHHHcCCCEEEEEcCChh---hHHHHH-HcCCceE--eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL---GTVGLSVAQGAKARGASRIIGVDTNPE---KCEKAK-AFGVTEF--LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga---g~~G~~ai~la~~~G~~~vi~~~~~~~---~~~~~~-~lg~~~v--i~~~~~~~~~~~~v~~~~~-- 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++++++ ..+.++ +.+.... .|..+ ...+.+.+.+...
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSL-DEDIKNLKKFLEENW 97 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4688999984 6999999998888899 9999988875 233332 2342222 35541 2233333333322
Q ss_pred CCccEEEEcCC
Q 017460 255 GGADYSFECIG 265 (371)
Q Consensus 255 gg~dvVid~~g 265 (371)
+++|++|.+.|
T Consensus 98 g~iD~lv~~Ag 108 (285)
T 2p91_A 98 GSLDIIVHSIA 108 (285)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37999999987
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.063 Score=46.44 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=50.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHH-HHH----HcCCc-e--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAK----AFGVT-E--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~-~~~----~lg~~-~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
.+.++||+|+ |++|.+.+..+...|+ +|++++++.++.. .++ +.+.. . ..|..+ .+.+.+.+.+...
T Consensus 13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDADL 90 (265)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC-HHHHHHHHHHHHHhc
Confidence 3678999986 9999999998888999 9999988654432 222 22432 1 235441 2233333443322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+.+|++|.+.|.
T Consensus 91 ~~id~li~~Ag~ 102 (265)
T 1h5q_A 91 GPISGLIANAGV 102 (265)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999998874
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.11 Score=45.98 Aligned_cols=73 Identities=26% Similarity=0.316 Sum_probs=50.9
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcC-CCEEEEEcCChhhH--HHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARG-ASRIIGVDTNPEKC--EKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G-~~~vi~~~~~~~~~--~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
..+|||+|+ |.+|...+..+...| + +|+++++++++. +.+...++..+ .|.. + .+.+.+... ++|+||
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~--d---~~~l~~~~~-~~d~vi 77 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQD--D---QVIMELALN-GAYATF 77 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCEEEECCTT--C---HHHHHHHHT-TCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCEEEEecCC--C---HHHHHHHHh-cCCEEE
Confidence 468999996 999999998887778 7 999999987764 33444566433 2443 2 233444333 699999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.+.
T Consensus 78 ~~a~~ 82 (299)
T 2wm3_A 78 IVTNY 82 (299)
T ss_dssp ECCCH
T ss_pred EeCCC
Confidence 99873
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.062 Score=46.91 Aligned_cols=95 Identities=22% Similarity=0.316 Sum_probs=62.6
Q ss_pred hcchhhhhHHhHhhhhcC-CCCCCEEEEEccC-hHHHHHHHHHHHc--CCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 166 LLSCGLSAGLGAAWNVAD-ISKGSTVVIFGLG-TVGLSVAQGAKAR--GASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~-~~~~~~VlI~Gag-~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
.+||....+...+ +..+ --.|.+++|+|+| .+|..+++++... |+ .|+++.+..
T Consensus 137 ~~PcTp~gi~~ll-~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a-tVtv~h~~t-------------------- 194 (281)
T 2c2x_A 137 PLPCTPRGIVHLL-RRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENA-TVTLCHTGT-------------------- 194 (281)
T ss_dssp CCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCC-EEEEECTTC--------------------
T ss_pred CCCChHHHHHHHH-HHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCC-EEEEEECch--------------------
Confidence 4454444444444 3333 3478999999987 5799999999988 78 888875433
Q ss_pred CchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 242 NEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 242 ~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
.++.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|...
T Consensus 195 -~~L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDVgi~r 235 (281)
T 2c2x_A 195 -RDLPALTR-----QADIVVAAVGVAHLLTA--DMVRPG-AAVIDVGVSR 235 (281)
T ss_dssp -SCHHHHHT-----TCSEEEECSCCTTCBCG--GGSCTT-CEEEECCEEE
T ss_pred -hHHHHHHh-----hCCEEEECCCCCcccCH--HHcCCC-cEEEEccCCC
Confidence 12333322 58999999998754322 346776 7888887653
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.044 Score=47.79 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=48.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
+|+++||+|+ +++|++.++.+...|+ +|+.+.++.++ .+... ...|..+ .+.....+.+... |++|++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~-----~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~iDil 82 (261)
T 4h15_A 10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPE-----GLPEELFVEADLTT-KEGCAIVAEATRQRLGGVDVI 82 (261)
T ss_dssp TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCT-----TSCTTTEEECCTTS-HHHHHHHHHHHHHHTSSCSEE
T ss_pred CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchh-----CCCcEEEEEcCCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 5899999985 8999999999999999 99999886542 11111 1234441 2333333333322 379999
Q ss_pred EEcCC
Q 017460 261 FECIG 265 (371)
Q Consensus 261 id~~g 265 (371)
+++.|
T Consensus 83 VnnAG 87 (261)
T 4h15_A 83 VHMLG 87 (261)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99876
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.3 Score=43.56 Aligned_cols=88 Identities=20% Similarity=0.330 Sum_probs=57.6
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC--hhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTN--PEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~--~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+|.|+|.|.+|...++.+...|...|++.+++ +++.+.+++.|+.. . .+..+.+. ..|+||-++.
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~-~------~~~~e~~~-----~aDvVi~~vp 92 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSC-K------ASVAEVAG-----ECDVIFSLVT 92 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEE-C------SCHHHHHH-----HCSEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEE-e------CCHHHHHh-----cCCEEEEecC
Confidence 579999999999998888877787689999996 57888888888642 1 12222222 3688888887
Q ss_pred ChHHH---HHHHHHhccCCceEEEec
Q 017460 266 DTGMI---TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~~l---~~~~~~l~~~~G~~v~~g 288 (371)
..... ......++++ ..++.++
T Consensus 93 ~~~~~~~~~~l~~~l~~~-~ivvd~s 117 (312)
T 3qsg_A 93 AQAALEVAQQAGPHLCEG-ALYADFT 117 (312)
T ss_dssp TTTHHHHHHHHGGGCCTT-CEEEECC
T ss_pred chhHHHHHHhhHhhcCCC-CEEEEcC
Confidence 65332 2223334443 4444443
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.089 Score=50.60 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=52.2
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-------HHHHHHcCCce-E--eCCCCCCchHHHHHHHH
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-------CEKAKAFGVTE-F--LNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-------~~~~~~lg~~~-v--i~~~~~~~~~~~~v~~~ 252 (371)
++++.++||+|+ |++|...+..+...|+.+|+.+.++... .+.+++.|... + .|..+ ...+...+..
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~- 333 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE-RDALAALVTA- 333 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC-HHHHHHHHHH-
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHhc-
Confidence 567899999985 9999999888888898668888887632 22344556532 2 24441 1222222222
Q ss_pred hCCCccEEEEcCCC
Q 017460 253 TDGGADYSFECIGD 266 (371)
Q Consensus 253 ~~gg~dvVid~~g~ 266 (371)
+.+|+||.+.|.
T Consensus 334 --~~ld~VVh~AGv 345 (511)
T 2z5l_A 334 --YPPNAVFHTAGI 345 (511)
T ss_dssp --SCCSEEEECCCC
T ss_pred --CCCcEEEECCcc
Confidence 479999999873
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.029 Score=51.47 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=63.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh----h--------hHHHHHHcCCceEeCCCCCCchHHHHHHHHh
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP----E--------KCEKAKAFGVTEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~----~--------~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~ 253 (371)
+..+|+|+|+|..|..+++++..+|+++|+.++++- . +..+++.... .. + ..++.+.++
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~---~~-~--~~~L~eav~--- 257 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR---EF-K--SGTLEDALE--- 257 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC---TT-C--CCSCSHHHH---
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCc---cc-c--hhhHHHHhc---
Confidence 457899999999999999999999999999998862 1 1122222110 00 0 223444443
Q ss_pred CCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 254 DGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 254 ~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
++|++|-+++..-.-++.++.|+++ ..++.+..+.
T Consensus 258 --~ADV~IG~Sapgl~T~EmVk~Ma~~-pIIfalsNPt 292 (398)
T 2a9f_A 258 --GADIFIGVSAPGVLKAEWISKMAAR-PVIFAMANPI 292 (398)
T ss_dssp --TTCSEEECCSTTCCCHHHHHTSCSS-CEEEECCSSS
T ss_pred --cCCEEEecCCCCCCCHHHHHhhCCC-CEEEECCCCC
Confidence 4799999887433346788899986 7887786654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.1 Score=46.56 Aligned_cols=98 Identities=17% Similarity=0.120 Sum_probs=63.9
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC--------C--ceEeCCCCCCchHHHHHHHHh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG--------V--TEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg--------~--~~vi~~~~~~~~~~~~v~~~~ 253 (371)
..++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.- . ..++. .+..+.+....
T Consensus 93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~-----~D~~~~~~~~~ 166 (304)
T 3bwc_A 93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV-----GDGLAFVRQTP 166 (304)
T ss_dssp SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHHHSSC
T ss_pred CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE-----CcHHHHHHhcc
Confidence 35678999998764 666777777655459999999998888876532 0 11221 22333222212
Q ss_pred CCCccEEEEcCCC----------hHHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADYSFECIGD----------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dvVid~~g~----------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.||+|+-.... ...++.+.+.|+++ |.++...
T Consensus 167 ~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~ 210 (304)
T 3bwc_A 167 DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQG 210 (304)
T ss_dssp TTCEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEec
Confidence 3489998753321 24578888999997 9988764
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.025 Score=49.30 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhC--CCccEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITD--GGADYSF 261 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~--gg~dvVi 261 (371)
.++++||+|+ |++|.+.+..+...|+ +|++++++.++... ..+.. ..|..+ .+...+.+.+... +++|++|
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~---~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~lv 101 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSAD---PDIHTVAGDISK-PETADRIVREGIERFGRIDSLV 101 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSS---TTEEEEESCTTS-HHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccc---CceEEEEccCCC-HHHHHHHHHHHHHHCCCCCEEE
Confidence 4678999986 8999999998888999 99999887654321 11211 224441 2233333333322 3799999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.|.
T Consensus 102 ~nAg~ 106 (260)
T 3un1_A 102 NNAGV 106 (260)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99873
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.045 Score=47.26 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=49.4
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc-CChhhHH----HHHHcCCce-E--eCCCCCCchHHHHHHHHhC
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKCE----KAKAFGVTE-F--LNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~-~~~~~~~----~~~~lg~~~-v--i~~~~~~~~~~~~v~~~~~ 254 (371)
..++++|||+|+ |++|.+.+..+...|+ +|++++ ++.++.+ .+++.+... . .|..+ .+...+.+.+...
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGD-WDSTKQAFDKVKA 87 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCC-HHHHHHHHHHHHH
Confidence 456788999985 8999999988888999 888876 4444332 234445432 2 24431 2233333333322
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 88 ~~g~id~lv~~Ag~ 101 (256)
T 3ezl_A 88 EVGEIDVLVNNAGI 101 (256)
T ss_dssp HTCCEEEEEECCCC
T ss_pred hcCCCCEEEECCCC
Confidence 379999999873
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.039 Score=49.77 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=48.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+|||+|+ |.+|...+..+...|+ +|+++++++.+.+.+.+.++..+ .|.. + .+.+.+... ++|+||.+.+
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~Dl~--d---~~~~~~~~~-~~d~vih~a~ 86 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPECRVAEML--D---HAGLERALR-GLDGVIFSAG 86 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCEEEECCTT--C---HHHHHHHTT-TCSEEEEC--
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeEEEEecCC--C---HHHHHHHHc-CCCEEEECCc
Confidence 47999986 9999999999988998 99999998776544433354332 2443 2 233444433 6999999987
Q ss_pred C
Q 017460 266 D 266 (371)
Q Consensus 266 ~ 266 (371)
.
T Consensus 87 ~ 87 (342)
T 2x4g_A 87 Y 87 (342)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.12 Score=49.26 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-------HHHHHHcCCce-E--eCCCCCCchHHHHHHHH
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-------CEKAKAFGVTE-F--LNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-------~~~~~~lg~~~-v--i~~~~~~~~~~~~v~~~ 252 (371)
++++.++||+|+ |++|...+..+...|+++|+.+.++... .+.+++.|... + .|..+ ...+...+...
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~i 301 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLGGI 301 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHHHH
Confidence 567899999985 9999998888877898668888887641 12345566542 2 34441 22333334433
Q ss_pred hC-CCccEEEEcCCC
Q 017460 253 TD-GGADYSFECIGD 266 (371)
Q Consensus 253 ~~-gg~dvVid~~g~ 266 (371)
.. +.+|.||.+.|.
T Consensus 302 ~~~g~ld~VIh~AG~ 316 (486)
T 2fr1_A 302 GDDVPLSAVFHAAAT 316 (486)
T ss_dssp CTTSCEEEEEECCCC
T ss_pred HhcCCCcEEEECCcc
Confidence 22 278999999873
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.19 Score=45.48 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=53.9
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhh-HHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK-CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+.+|.|+|.|.+|.+.+..++..|. +|++.++++++ .+.+++.|... .+ ..+.+. ..|+|+-++.
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~~~-~~-------~~e~~~-----~aDvVilavp 81 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGLKV-AD-------VKTAVA-----AADVVMILTP 81 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTCEE-EC-------HHHHHH-----TCSEEEECSC
T ss_pred CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCCEE-cc-------HHHHHh-----cCCEEEEeCC
Confidence 4579999999999999999988998 89999888766 67778888742 21 222222 5899999998
Q ss_pred ChHHHHHHHH
Q 017460 266 DTGMITTALQ 275 (371)
Q Consensus 266 ~~~~l~~~~~ 275 (371)
.. .....+.
T Consensus 82 ~~-~~~~v~~ 90 (338)
T 1np3_A 82 DE-FQGRLYK 90 (338)
T ss_dssp HH-HHHHHHH
T ss_pred cH-HHHHHHH
Confidence 64 3344444
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.26 Score=42.54 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=60.8
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
.+|.|+|+|.+|...+..+...|. .|.+.++++++.+.+. ++|+.. . .++.+.+. .+|+||.++..
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~g~~~---~----~~~~~~~~-----~~D~Vi~~v~~ 70 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPY---A----MSHQDLID-----QVDLVILGIKP 70 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCB---C----SSHHHHHH-----TCSEEEECSCG
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHHcCCEe---e----CCHHHHHh-----cCCEEEEEeCc
Confidence 378999999999998888877887 9999999998887765 457531 1 12333322 58999999984
Q ss_pred hHHHHHHHHHhccCCceEEEe
Q 017460 267 TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 267 ~~~l~~~~~~l~~~~G~~v~~ 287 (371)
......+..++++ ..++..
T Consensus 71 -~~~~~v~~~l~~~-~~vv~~ 89 (259)
T 2ahr_A 71 -QLFETVLKPLHFK-QPIISM 89 (259)
T ss_dssp -GGHHHHHTTSCCC-SCEEEC
T ss_pred -HhHHHHHHHhccC-CEEEEe
Confidence 4566777777764 555555
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.019 Score=50.12 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=62.4
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHc---CCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKAR---GASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~---G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~ 253 (371)
+++|.+||-+|+|. |..+..+++.. |+ +|++++.+++-++.+++ .+.. .++... +..+.
T Consensus 68 ~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D---------~~~~~ 136 (261)
T 4gek_A 68 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD---------IRDIA 136 (261)
T ss_dssp CCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC---------TTTCC
T ss_pred CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeecc---------ccccc
Confidence 78999999999864 66777777764 66 99999999998887754 3332 122111 01122
Q ss_pred CCCccEEEEcCCC-----h---HHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADYSFECIGD-----T---GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dvVid~~g~-----~---~~l~~~~~~l~~~~G~~v~~g 288 (371)
-+.+|+|+-...- . ..++...+.|+|| |.++...
T Consensus 137 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e 178 (261)
T 4gek_A 137 IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSE 178 (261)
T ss_dssp CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEe
Confidence 2368888764321 1 2478888999998 9988764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.095 Score=44.21 Aligned_cols=95 Identities=19% Similarity=0.266 Sum_probs=63.3
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc-----------eEeCCCCCCchHHHHHHHH
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT-----------EFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~-----------~vi~~~~~~~~~~~~v~~~ 252 (371)
++++.+||-+|+|. |..+..+++. |. +|++++.++...+.+++.... .++... ...+ ..
T Consensus 28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~-----~~ 97 (235)
T 3sm3_A 28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVEN--ASSL-----SF 97 (235)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECC--TTSC-----CS
T ss_pred CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEec--cccc-----CC
Confidence 56789999999875 7777777776 87 999999999988888663221 122111 1110 01
Q ss_pred hCCCccEEEEcCC-----Ch----HHHHHHHHHhccCCceEEEecC
Q 017460 253 TDGGADYSFECIG-----DT----GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 253 ~~gg~dvVid~~g-----~~----~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
..+.+|+|+-... +. ..++.+.+.|+++ |+++....
T Consensus 98 ~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 142 (235)
T 3sm3_A 98 HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPG-AYLYLVEF 142 (235)
T ss_dssp CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCC-eEEEEEEC
Confidence 1237999986322 22 3678888999997 99887643
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.15 Score=48.84 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=51.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh-------hHHHHHHcCCceE---eCCCCCCchHHHHHHHHhCC-
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-------KCEKAKAFGVTEF---LNPNDNNEPVQQVIKRITDG- 255 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~-------~~~~~~~lg~~~v---i~~~~~~~~~~~~v~~~~~g- 255 (371)
.++||+|+ |++|...+..+...|+.+|+.+.++.. -.+.+++.|.... .|..+ ...+...+.+....
T Consensus 240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAAD-REALAALLAELPEDA 318 (496)
T ss_dssp SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTCCTTS
T ss_pred CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHhC
Confidence 89999985 999999888888889878888877632 1233456676432 24441 23334444443333
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+||.+.|.
T Consensus 319 ~ld~vVh~AGv 329 (496)
T 3mje_A 319 PLTAVFHSAGV 329 (496)
T ss_dssp CEEEEEECCCC
T ss_pred CCeEEEECCcc
Confidence 79999998874
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.14 Score=45.40 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=49.9
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC-----hhhHHHHH---HcCCceE-eCCCCCCchHHHHHHHHhCCC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-----PEKCEKAK---AFGVTEF-LNPNDNNEPVQQVIKRITDGG 256 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~-----~~~~~~~~---~lg~~~v-i~~~~~~~~~~~~v~~~~~gg 256 (371)
..+|||+|+ |.+|...+..+...|. +|++++++ +++.+.++ ..++..+ .|.. + .+.+.+... +
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~--d---~~~l~~~~~-~ 76 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD--D---HQRLVDALK-Q 76 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSS--C---HHHHHHHHT-T
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCC--C---HHHHHHHHh-C
Confidence 357999986 9999999999888898 89999987 44544443 3354432 2443 2 233444443 6
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|+||.+.+.
T Consensus 77 ~d~vi~~a~~ 86 (313)
T 1qyd_A 77 VDVVISALAG 86 (313)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCcc
Confidence 9999998874
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.082 Score=45.84 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=49.4
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh-hhHHHHHH----cCCc-e--EeCCCCCCchHHHHHHHHhC--C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCEKAKA----FGVT-E--FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~-~~~~~~~~----lg~~-~--vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+.++||+|+ |++|.+.+..+...|+ +|+++.+++ +..+.+++ .+.. . ..|..+ .+.+.+.+.+... +
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTK-KEDLHKIVEEAMSHFG 84 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTS-HHHHHHHHHHHHHHHS
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence 578999986 8999999998888999 888885554 44444432 2222 1 235541 2333333433322 3
Q ss_pred CccEEEEcCC
Q 017460 256 GADYSFECIG 265 (371)
Q Consensus 256 g~dvVid~~g 265 (371)
++|++|.+.|
T Consensus 85 ~id~lv~~Ag 94 (264)
T 3i4f_A 85 KIDFLINNAG 94 (264)
T ss_dssp CCCEEECCCC
T ss_pred CCCEEEECCc
Confidence 7999999998
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.14 Score=42.86 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=61.5
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHH----HHHHcCCceEeCCCCCCchHHHHHHHHhCCCc
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE----KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~----~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
..+++|++||=+|+|+ |..+..+++..|..+|++++.+++..+ .+++..-...+..+ ..... ... ...+.|
T Consensus 53 ~~~~~g~~VLDlGcGt-G~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d--~~~~~-~~~-~~~~~f 127 (210)
T 1nt2_A 53 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFD--ASKPW-KYS-GIVEKV 127 (210)
T ss_dssp CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSC--TTCGG-GTT-TTCCCE
T ss_pred cCCCCCCEEEEECCcC-CHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcC--CCCch-hhc-ccccce
Confidence 5678899999999874 667777887775339999999997543 33433211122111 11100 000 012479
Q ss_pred cEEEEcCCChH----HHHHHHHHhccCCceEEEe
Q 017460 258 DYSFECIGDTG----MITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 258 dvVid~~g~~~----~l~~~~~~l~~~~G~~v~~ 287 (371)
|+|+-...... .+..+.+.|+++ |+++..
T Consensus 128 D~V~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~i~ 160 (210)
T 1nt2_A 128 DLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM 160 (210)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred eEEEEeccChhHHHHHHHHHHHHhCCC-CEEEEE
Confidence 99987654332 257788899997 998876
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.14 Score=45.83 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=63.4
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH----cCCc--eEeCCCCCCchHHHHHHHHh
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA----FGVT--EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~----lg~~--~vi~~~~~~~~~~~~v~~~~ 253 (371)
...++++++||-+|+|+ |..++++++.++ ..+|++++.++.+.+.+++ +|.. .++..+ ...+. . .
T Consensus 113 ~l~~~~g~~VLDlg~G~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D--~~~~~----~-~ 184 (315)
T 1ixk_A 113 ALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSS--SLHIG----E-L 184 (315)
T ss_dssp HHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSC--GGGGG----G-G
T ss_pred HhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECC--hhhcc----c-c
Confidence 34678899999888764 555667777652 2399999999998887744 4653 233221 11111 1 2
Q ss_pred CCCccEEEE---cCCC-------------------------hHHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFE---CIGD-------------------------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid---~~g~-------------------------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.||+|+- |+|. ...+..+.+.|+++ |+++..
T Consensus 185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG-G~lv~s 245 (315)
T 1ixk_A 185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYS 245 (315)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEE
Confidence 337999874 3331 14577888999997 998764
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.055 Score=46.06 Aligned_cols=98 Identities=19% Similarity=0.288 Sum_probs=64.6
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc---eEeCCCCCCchHHHHHHHHhCCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT---EFLNPNDNNEPVQQVIKRITDGG 256 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~---~vi~~~~~~~~~~~~v~~~~~gg 256 (371)
......++.+||-+|+|. |..+..+++. |..++++++.++...+.+++.... .++... ...+ ....+.
T Consensus 37 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d--~~~~-----~~~~~~ 107 (243)
T 3bkw_A 37 AMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERAD--LDKL-----HLPQDS 107 (243)
T ss_dssp HHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECC--GGGC-----CCCTTC
T ss_pred HhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcC--hhhc-----cCCCCC
Confidence 445566789999998865 6666667665 655899999999999988775432 122111 0110 011237
Q ss_pred ccEEEEcCCC------hHHHHHHHHHhccCCceEEEe
Q 017460 257 ADYSFECIGD------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 257 ~dvVid~~g~------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
+|+|+....- ...++.+.+.|+++ |+++..
T Consensus 108 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~ 143 (243)
T 3bkw_A 108 FDLAYSSLALHYVEDVARLFRTVHQALSPG-GHFVFS 143 (243)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ceEEEEeccccccchHHHHHHHHHHhcCcC-cEEEEE
Confidence 9999875431 23578888999997 998765
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.069 Score=47.12 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=63.3
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc-CC-------c--eEeCCCCCCchHHHHHHHHh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GV-------T--EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~-------~--~vi~~~~~~~~~~~~v~~~~ 253 (371)
..++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .. . .++. .+..+.+...
T Consensus 76 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~-----~D~~~~l~~~- 148 (283)
T 2i7c_A 76 SKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI-----EDASKFLENV- 148 (283)
T ss_dssp SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE-----SCHHHHHHHC-
T ss_pred CCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE-----CChHHHHHhC-
Confidence 34678999998764 55666677766545999999999988888663 21 1 1221 2233333332
Q ss_pred CCCccEEEEcCCC----------hHHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADYSFECIGD----------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dvVid~~g~----------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.||+|+--... ...++.+.+.|+++ |.++...
T Consensus 149 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~ 192 (283)
T 2i7c_A 149 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQC 192 (283)
T ss_dssp CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEC
Confidence 3489998752211 24578888999997 9988764
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.091 Score=45.78 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=49.9
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc-CChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC-
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD-TNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~-~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~- 254 (371)
..+.++||+|+ |++|.+.+..+...|+ +|++++ ++.++.+.. ++.+.. . ..|..+ .....+.+.+...
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVAD-FESCERCAEKVLAD 100 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHH
Confidence 35678999986 9999999998888999 888887 444443332 233332 1 235541 2233333333322
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
+++|++|.+.|.
T Consensus 101 ~g~id~li~nAg~ 113 (269)
T 3gk3_A 101 FGKVDVLINNAGI 113 (269)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 379999999873
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.1 Score=45.78 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=63.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc------CC--c--eEeCCCCCCchHHHHHHHHhC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF------GV--T--EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l------g~--~--~vi~~~~~~~~~~~~v~~~~~ 254 (371)
.++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. +. . .++.. +..+.+.. ..
T Consensus 74 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~-----D~~~~l~~-~~ 146 (275)
T 1iy9_A 74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD-----DGFMHIAK-SE 146 (275)
T ss_dssp SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES-----CSHHHHHT-CC
T ss_pred CCCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC-----cHHHHHhh-CC
Confidence 3568999998764 56666777776766999999999988888653 11 1 22221 12222322 23
Q ss_pred CCccEEEEcCCC----------hHHHHHHHHHhccCCceEEEec
Q 017460 255 GGADYSFECIGD----------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 255 gg~dvVid~~g~----------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.||+|+--... ...++.+.+.|+++ |.++...
T Consensus 147 ~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg-G~lv~~~ 189 (275)
T 1iy9_A 147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT 189 (275)
T ss_dssp SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence 489998764322 34688999999997 9988763
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.094 Score=48.77 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=53.3
Q ss_pred hcCC-CCCCEEEEEcc-ChHHHHHHHHHHH-cCCCEEEEEcCChhh----------------HHHHHHcCCce---EeCC
Q 017460 181 VADI-SKGSTVVIFGL-GTVGLSVAQGAKA-RGASRIIGVDTNPEK----------------CEKAKAFGVTE---FLNP 238 (371)
Q Consensus 181 ~~~~-~~~~~VlI~Ga-g~~G~~ai~la~~-~G~~~vi~~~~~~~~----------------~~~~~~lg~~~---vi~~ 238 (371)
...+ +.++++||+|+ +++|++.+..+.. .|+ +|+++.++.+. .+.+++.|... ..|.
T Consensus 54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dv 132 (422)
T 3s8m_A 54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDA 132 (422)
T ss_dssp TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecC
Confidence 3455 35778899986 8999997777777 899 99888776432 14456667542 2244
Q ss_pred CCCCchH---HHHHHHHhCCCccEEEEcCCC
Q 017460 239 NDNNEPV---QQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 239 ~~~~~~~---~~~v~~~~~gg~dvVid~~g~ 266 (371)
.+ .+.. .+.+.+..+|++|+++++.|.
T Consensus 133 td-~~~v~~~v~~i~~~~~G~IDiLVNNAG~ 162 (422)
T 3s8m_A 133 FS-DAARAQVIELIKTEMGGQVDLVVYSLAS 162 (422)
T ss_dssp TS-HHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred CC-HHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence 41 2222 233333333689999998875
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.064 Score=47.46 Aligned_cols=37 Identities=35% Similarity=0.481 Sum_probs=33.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhh
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK 223 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~ 223 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++.++
T Consensus 121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~ 157 (290)
T 3gvx_A 121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVD 157 (290)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCC
T ss_pred ecchheeeccCchhHHHHHHHHhhCc-EEEEEeccccc
Confidence 47899999999999999999999999 99999987654
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.12 Score=44.02 Aligned_cols=94 Identities=11% Similarity=0.108 Sum_probs=60.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
....+++|+|+|.+|...++.+...|. |+++++++++.+.++ .|...+. |.. + .+.+.+..-.++|.|+-+
T Consensus 7 ~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~-~~~~~i~gd~~--~---~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 7 AKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR-SGANFVHGDPT--R---VSDLEKANVRGARAVIVD 78 (234)
T ss_dssp ---CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH-TTCEEEESCTT--C---HHHHHHTTCTTCSEEEEC
T ss_pred CCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh-cCCeEEEcCCC--C---HHHHHhcCcchhcEEEEc
Confidence 446789999999999988888887776 889999999888877 6765433 332 2 123333312279999999
Q ss_pred CCChHH---HHHHHHHhccCCceEEEe
Q 017460 264 IGDTGM---ITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 264 ~g~~~~---l~~~~~~l~~~~G~~v~~ 287 (371)
+++... +....+.+.+. .+++.-
T Consensus 79 ~~~d~~n~~~~~~a~~~~~~-~~iia~ 104 (234)
T 2aef_A 79 LESDSETIHCILGIRKIDES-VRIIAE 104 (234)
T ss_dssp CSCHHHHHHHHHHHHHHCSS-SEEEEE
T ss_pred CCCcHHHHHHHHHHHHHCCC-CeEEEE
Confidence 987532 22334445553 466554
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.05 Score=53.66 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=46.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC---------ChhhHHH----HHHcCCceEeCCCCCCchHHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDT---------NPEKCEK----AKAFGVTEFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~---------~~~~~~~----~~~lg~~~vi~~~~~~~~~~~~v~~ 251 (371)
.|+++||+|+ +++|.+.+..+...|+ +|+++++ +.++.+. +++.+...+.|..+ ..+..+.+.+
T Consensus 18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d-~~~~~~~~~~ 95 (613)
T 3oml_A 18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS-VIDGAKVIET 95 (613)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCCC-GGGHHHHHC-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC-HHHHHHHHHH
Confidence 4788999986 8999999998888999 9998876 4443332 34456655666652 3334444443
Q ss_pred HhC--CCccEEEEcCCC
Q 017460 252 ITD--GGADYSFECIGD 266 (371)
Q Consensus 252 ~~~--gg~dvVid~~g~ 266 (371)
... +.+|++|++.|.
T Consensus 96 ~~~~~g~iDiLVnnAGi 112 (613)
T 3oml_A 96 AIKAFGRVDILVNNAGI 112 (613)
T ss_dssp ---------CEECCCCC
T ss_pred HHHHCCCCcEEEECCCC
Confidence 332 279999998874
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.14 Score=46.46 Aligned_cols=87 Identities=15% Similarity=0.286 Sum_probs=60.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++..+.+... |+.. . .++.+.+. ..|+|+-++.
T Consensus 172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~-~------~~l~ell~-----~sDvV~l~~P 236 (345)
T 4g2n_A 172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIY-H------DTLDSLLG-----ASDIFLIAAP 236 (345)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEE-C------SSHHHHHH-----TCSEEEECSC
T ss_pred CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeE-e------CCHHHHHh-----hCCEEEEecC
Confidence 47899999999999999999999999 9999998765443332 4431 1 12333222 4788888776
Q ss_pred ChH----HH-HHHHHHhccCCceEEEec
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g 288 (371)
... .+ ...+..++++ ..+|.++
T Consensus 237 lt~~T~~li~~~~l~~mk~g-ailIN~a 263 (345)
T 4g2n_A 237 GRPELKGFLDHDRIAKIPEG-AVVINIS 263 (345)
T ss_dssp CCGGGTTCBCHHHHHHSCTT-EEEEECS
T ss_pred CCHHHHHHhCHHHHhhCCCC-cEEEECC
Confidence 421 12 4667778886 7777775
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.038 Score=49.86 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=47.6
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhH-HHHHHc-CCceE-eCCCCCCchHHHHHHHHhCC-CccEEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC-EKAKAF-GVTEF-LNPNDNNEPVQQVIKRITDG-GADYSF 261 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~-~~~~~l-g~~~v-i~~~~~~~~~~~~v~~~~~g-g~dvVi 261 (371)
+.+|||+|+ |.+|...+..+...|+ +|+++++++... +.+.++ ++..+ .|.. +. +.+.++..+ .+|+||
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~--d~---~~~~~~~~~~~~D~vi 94 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGD-KVVGIDNFATGRREHLKDHPNLTFVEGSIA--DH---ALVNQLIGDLQPDAVV 94 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCGGGSCCCTTEEEEECCTT--CH---HHHHHHHHHHCCSEEE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCCccchhhHhhcCCceEEEEeCC--CH---HHHHHHHhccCCcEEE
Confidence 578999986 9999999998888898 999998875431 112222 22211 2443 22 233333333 699999
Q ss_pred EcCCC
Q 017460 262 ECIGD 266 (371)
Q Consensus 262 d~~g~ 266 (371)
.+.+.
T Consensus 95 h~A~~ 99 (333)
T 2q1w_A 95 HTAAS 99 (333)
T ss_dssp ECCCC
T ss_pred ECcee
Confidence 98873
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.082 Score=48.18 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=48.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHH--cCCCEEEEEcCChhhH-------------HHHHHcCCceE-eCCCCCCchHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKA--RGASRIIGVDTNPEKC-------------EKAKAFGVTEF-LNPNDNNEPVQQV 248 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~--~G~~~vi~~~~~~~~~-------------~~~~~lg~~~v-i~~~~~~~~~~~~ 248 (371)
.+.+|||+|+ |.+|...+..+.. .|+ +|++++++.... ......++..+ .|.. +. +.
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~---~~ 82 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADIN--NP---LD 82 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTT--CH---HH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCC--CH---HH
Confidence 4679999986 9999998888887 899 999998865411 11111222222 2443 22 23
Q ss_pred HHHHhCCCccEEEEcCCC
Q 017460 249 IKRITDGGADYSFECIGD 266 (371)
Q Consensus 249 v~~~~~gg~dvVid~~g~ 266 (371)
+.++...++|+||.+.+.
T Consensus 83 ~~~~~~~~~D~vih~A~~ 100 (362)
T 3sxp_A 83 LRRLEKLHFDYLFHQAAV 100 (362)
T ss_dssp HHHHTTSCCSEEEECCCC
T ss_pred HHHhhccCCCEEEECCcc
Confidence 444423389999999873
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.21 Score=43.93 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=55.1
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
.+|.|+|+ |.+|...+..+...|. +|+++++++++.+.+++.|+.. .+ ... .. ..+|+||.++..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g~~~-~~----~~~-------~~-~~aDvVi~av~~ 77 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGMGIPL-TD----GDG-------WI-DEADVVVLALPD 77 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHTTCCC-CC----SSG-------GG-GTCSEEEECSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhcCCCc-CC----HHH-------Hh-cCCCEEEEcCCc
Confidence 47999999 9999999888888898 9999999999988887777432 11 111 11 168999999986
Q ss_pred hHHHHHHHHHh
Q 017460 267 TGMITTALQSC 277 (371)
Q Consensus 267 ~~~l~~~~~~l 277 (371)
.. +...++.+
T Consensus 78 ~~-~~~v~~~l 87 (286)
T 3c24_A 78 NI-IEKVAEDI 87 (286)
T ss_dssp HH-HHHHHHHH
T ss_pred hH-HHHHHHHH
Confidence 43 55555544
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.11 Score=50.11 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCCh-------------hh----HHHHHHcCCce---EeCCCCC
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNP-------------EK----CEKAKAFGVTE---FLNPNDN 241 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~-------------~~----~~~~~~lg~~~---vi~~~~~ 241 (371)
++++.++||+|+ |++|...+..+...|+++++.+ .++. ++ .+.+++.|... ..|..+
T Consensus 248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd- 326 (525)
T 3qp9_A 248 WQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD- 326 (525)
T ss_dssp SCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS-
T ss_pred ecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC-
Confidence 567889999985 9999998888878899557777 7763 21 23345567643 224441
Q ss_pred CchHHHHHHHHhC-CCccEEEEcCCC
Q 017460 242 NEPVQQVIKRITD-GGADYSFECIGD 266 (371)
Q Consensus 242 ~~~~~~~v~~~~~-gg~dvVid~~g~ 266 (371)
.......+..... +++|.||.+.|.
T Consensus 327 ~~~v~~~~~~i~~~g~id~vVh~AGv 352 (525)
T 3qp9_A 327 AEAAARLLAGVSDAHPLSAVLHLPPT 352 (525)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence 2333334443332 279999999884
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.067 Score=46.20 Aligned_cols=98 Identities=15% Similarity=0.084 Sum_probs=62.4
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc--eEeCCCCCCchHHHHHHH-HhCCC
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT--EFLNPNDNNEPVQQVIKR-ITDGG 256 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~--~vi~~~~~~~~~~~~v~~-~~~gg 256 (371)
..++.+||=+|+|+ |..++.+++.....+|++++.+++..+.+++ +|.. .++.. +..+.... ...+.
T Consensus 78 ~~~~~~vLDiG~G~-G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~-----d~~~~~~~~~~~~~ 151 (249)
T 3g89_A 78 WQGPLRVLDLGTGA-GFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWG-----RAEVLAREAGHREA 151 (249)
T ss_dssp CCSSCEEEEETCTT-TTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEEC-----CHHHHTTSTTTTTC
T ss_pred cCCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEEC-----cHHHhhcccccCCC
Confidence 46788999998753 5566667776543399999999998887743 5653 23322 22111110 11247
Q ss_pred ccEEEEcCCC--hHHHHHHHHHhccCCceEEEec
Q 017460 257 ADYSFECIGD--TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 257 ~dvVid~~g~--~~~l~~~~~~l~~~~G~~v~~g 288 (371)
||+|+...-. ...++.+...|+++ |+++.+-
T Consensus 152 fD~I~s~a~~~~~~ll~~~~~~Lkpg-G~l~~~~ 184 (249)
T 3g89_A 152 YARAVARAVAPLCVLSELLLPFLEVG-GAAVAMK 184 (249)
T ss_dssp EEEEEEESSCCHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred ceEEEECCcCCHHHHHHHHHHHcCCC-eEEEEEe
Confidence 9999874322 23567777889997 9988764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.08 Score=47.10 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=38.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECI 264 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~ 264 (371)
+.+|||+|+ |.+|...++.+...|+ +|++++++..+. + ....|..+ .. .+.+...+ ++|+||.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~------~-~~~~Dl~d-~~----~~~~~~~~~~~d~vih~A 68 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRRARP------K-FEQVNLLD-SN----AVHHIIHDFQPHVIVHCA 68 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC------------------------------CHHHHHHHCCSEEEECC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCCCCC------C-eEEecCCC-HH----HHHHHHHhhCCCEEEECC
Confidence 468999986 9999999998888898 999998765441 1 11123321 11 22233333 689999988
Q ss_pred CC
Q 017460 265 GD 266 (371)
Q Consensus 265 g~ 266 (371)
+.
T Consensus 69 ~~ 70 (315)
T 2ydy_A 69 AE 70 (315)
T ss_dssp --
T ss_pred cc
Confidence 74
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.051 Score=46.35 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=59.3
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCC-EEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+.+|||+|+ |.+|...+..+...|+. +|+++++++++.+....-++..+ .|.. + .+.+.+... ++|+||.+
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~--d---~~~~~~~~~-~~d~vi~~ 91 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFE--K---LDDYASAFQ-GHDVGFCC 91 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGG--G---GGGGGGGGS-SCSEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcC--C---HHHHHHHhc-CCCEEEEC
Confidence 678999986 99999999888888863 78888887765432211122211 2332 1 122333332 79999999
Q ss_pred CCChH--------------HHHHHHHHhcc-CCceEEEecCCCC
Q 017460 264 IGDTG--------------MITTALQSCCD-GWGLAVTLGVPKL 292 (371)
Q Consensus 264 ~g~~~--------------~l~~~~~~l~~-~~G~~v~~g~~~~ 292 (371)
.|... .....++.+.. +.++++.+++...
T Consensus 92 ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~ 135 (242)
T 2bka_A 92 LGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA 135 (242)
T ss_dssp CCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcC
Confidence 98531 11223333333 2268888876543
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.37 Score=41.61 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=56.1
Q ss_pred EEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~-lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|.|+|+|.+|.+.+..+...| . .|++.++++++.+.+.+ +|+...-+.. + .. .+|+||-++.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~-~v~~~~r~~~~~~~~~~~~g~~~~~~~~---~--------~~--~~D~vi~~v~- 66 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGAEKRERLEKELGVETSATLP---E--------LH--SDDVLILAVK- 66 (263)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSHHHHHHHHHHTCCEEESSCC---C--------CC--TTSEEEECSC-
T ss_pred EEEEECchHHHHHHHHHHHHCCCC-eEEEECCCHHHHHHHHHhcCCEEeCCHH---H--------Hh--cCCEEEEEeC-
Confidence 6889999999998888777778 7 99999999998887755 5764221221 0 01 4688888887
Q ss_pred hHHHHHHHHHhccCCceEEEe
Q 017460 267 TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 267 ~~~l~~~~~~l~~~~G~~v~~ 287 (371)
...++..+..+.+....++.+
T Consensus 67 ~~~~~~v~~~l~~~~~ivv~~ 87 (263)
T 1yqg_A 67 PQDMEAACKNIRTNGALVLSV 87 (263)
T ss_dssp HHHHHHHHTTCCCTTCEEEEC
T ss_pred chhHHHHHHHhccCCCEEEEe
Confidence 445666665554320334444
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.087 Score=46.35 Aligned_cols=89 Identities=22% Similarity=0.209 Sum_probs=59.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
-.+.++||+|+|++|.+++..+...|+++|+++.|+.+|.+.+. ++. .+ .+. .+.++ .+|+||++
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~---~~-------~~~-~l~~l---~~DivIna 185 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK---VI-------SYD-ELSNL---KGDVIINC 185 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSE---EE-------EHH-HHTTC---CCSEEEEC
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcC---cc-------cHH-HHHhc---cCCEEEEC
Confidence 35889999999999999999999999989999999998876553 231 12 121 12221 68999999
Q ss_pred CCChH--H---HHHHHHHhccCCceEEEec
Q 017460 264 IGDTG--M---ITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 264 ~g~~~--~---l~~~~~~l~~~~G~~v~~g 288 (371)
++..- . .......++++ ..++.+.
T Consensus 186 Tp~Gm~~~~~~~pi~~~~l~~~-~~v~Dlv 214 (282)
T 3fbt_A 186 TPKGMYPKEGESPVDKEVVAKF-SSAVDLI 214 (282)
T ss_dssp SSTTSTTSTTCCSSCHHHHTTC-SEEEESC
T ss_pred CccCccCCCccCCCCHHHcCCC-CEEEEEe
Confidence 85420 0 11123456664 5556654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.049 Score=49.84 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=48.9
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHH-cCCceE-eCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKA-FGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~-lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
+.+|||+|+ |.+|...+..+... |+ +|+++++++++...+.+ .++..+ .|..+ + .+.+.+... ++|+||.
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~-d---~~~~~~~~~-~~d~Vih 97 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVKHERMHFFEGDITI-N---KEWVEYHVK-KCDVILP 97 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGGSTTEEEEECCTTT-C---HHHHHHHHH-HCSEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhccCCCeEEEeCccCC-C---HHHHHHHhc-cCCEEEE
Confidence 478999986 99999998888777 88 99999998876554433 233322 23321 1 122332222 6999999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.+.
T Consensus 98 ~A~~ 101 (372)
T 3slg_A 98 LVAI 101 (372)
T ss_dssp CBCC
T ss_pred cCcc
Confidence 8763
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.38 Score=42.69 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=39.3
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT 233 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~ 233 (371)
.+|-++|-|.+|...+.-+...|+ .|++.++++++.+.+.+.|+.
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~~~Ga~ 48 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGAS 48 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE
T ss_pred CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHcCCE
Confidence 368899999999988777777899 999999999999999888864
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.069 Score=48.28 Aligned_cols=85 Identities=25% Similarity=0.307 Sum_probs=58.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++.++. +++. +. . .++.+.+. ..|+|+.++.
T Consensus 145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~----~----~~l~ell~-----~aDvV~~~~p 207 (331)
T 1xdw_A 145 RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVFEIKG--IEDY-CT----Q----VSLDEVLE-----KSDIITIHAP 207 (331)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCS--CTTT-CE----E----CCHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCccHH--HHhc-cc----c----CCHHHHHh-----hCCEEEEecC
Confidence 46799999999999999999999999 999998876543 1111 11 1 12333332 3789888776
Q ss_pred ChH----HH-HHHHHHhccCCceEEEec
Q 017460 266 DTG----MI-TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~----~l-~~~~~~l~~~~G~~v~~g 288 (371)
... .+ ...+..++++ ..++.++
T Consensus 208 ~t~~t~~li~~~~l~~mk~g-a~lin~s 234 (331)
T 1xdw_A 208 YIKENGAVVTRDFLKKMKDG-AILVNCA 234 (331)
T ss_dssp CCTTTCCSBCHHHHHTSCTT-EEEEECS
T ss_pred CchHHHHHhCHHHHhhCCCC-cEEEECC
Confidence 421 12 4567788886 7788776
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 371 | ||||
| d1d1ta2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 4e-45 | |
| d1p0fa2 | 174 | c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog | 7e-41 | |
| d2jhfa2 | 176 | c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse ( | 4e-40 | |
| d1e3ia2 | 174 | c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse ( | 2e-39 | |
| d1cdoa1 | 199 | b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase | 5e-39 | |
| d2fzwa2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 9e-39 | |
| d2fzwa1 | 197 | b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase | 6e-37 | |
| d1p0fa1 | 198 | b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro | 2e-36 | |
| d1e3ia1 | 202 | b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase | 4e-33 | |
| d1cdoa2 | 175 | c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga | 3e-32 | |
| d2jhfa1 | 198 | b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase | 2e-31 | |
| d1f8fa2 | 174 | c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase { | 3e-29 | |
| d1f8fa1 | 194 | b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr | 2e-26 | |
| d1uufa1 | 179 | b.35.1.2 (A:3-144,A:313-349) Hypothetical protein | 1e-19 | |
| d1jqba2 | 174 | c.2.1.1 (A:1140-1313) Bacterial secondary alcohol | 9e-18 | |
| d1vj0a1 | 184 | b.35.1.2 (A:2-155,A:338-367) Hypothetical protein | 2e-17 | |
| d1llua1 | 175 | b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase | 4e-17 | |
| d1piwa1 | 192 | b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy | 3e-15 | |
| d1kola1 | 201 | b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog | 8e-15 | |
| d1jvba1 | 177 | b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase | 5e-13 | |
| d1e3ja1 | 178 | b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor | 2e-12 | |
| d1h2ba2 | 172 | c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo | 4e-12 | |
| d1vj0a2 | 182 | c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T | 8e-12 | |
| d1rjwa1 | 171 | b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase | 2e-11 | |
| d1h2ba1 | 171 | b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas | 4e-11 | |
| d1pl8a2 | 171 | c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh | 7e-11 | |
| d1kola2 | 195 | c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps | 9e-11 | |
| d1jqba1 | 177 | b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon | 2e-10 | |
| d1pl8a1 | 185 | b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor | 4e-10 | |
| d1e3ja2 | 170 | c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh | 8e-08 | |
| d1gu7a1 | 175 | b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu | 9e-08 | |
| d1uufa2 | 168 | c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc | 2e-07 | |
| d1iz0a1 | 131 | b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase | 7e-07 | |
| d1piwa2 | 168 | c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase | 4e-06 | |
| d1tt7a1 | 162 | b.35.1.2 (A:2-127,A:295-330) Hypothetical protein | 8e-04 | |
| d1pqwa_ | 183 | c.2.1.1 (A:) Putative enoyl reductase domain of po | 0.001 | |
| d1xa0a1 | 152 | b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo | 0.001 | |
| d1hwxa1 | 293 | c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow ( | 0.002 | |
| d1yb5a1 | 150 | b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas | 0.003 | |
| d2g5ca2 | 171 | c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA { | 0.004 |
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 151 bits (381), Expect = 4e-45
Identities = 80/175 (45%), Positives = 106/175 (60%)
Query: 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218
AP EK+CL+ CG S G GAA + GST V+FGLG VGLSV G K+ GASRIIG+D
Sbjct: 2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61
Query: 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 278
N +K EKA A G TE ++P D+ +P+ +V+ +T Y+FE IG + AL SC
Sbjct: 62 LNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCH 121
Query: 279 DGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKK 333
+G +V +GVP + L +GRT KG +FGG K + D+P LV +L K
Sbjct: 122 MNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 139 bits (352), Expect = 7e-41
Identities = 83/176 (47%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218
APLE CL+ CG + G GAA N A ++ GST +FGLG VG S G KA GASRIIGV
Sbjct: 1 APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59
Query: 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 278
T+ +K KA G TE LNP D ++P+ +VI T+GG DY+ EC G + ALQS
Sbjct: 60 THKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTY 119
Query: 279 DGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKE 334
G G+ V LG+ + L L+GR+LKGS+FGG+K + ++ LV+ Y+KK+
Sbjct: 120 CGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKK 174
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 138 bits (347), Expect = 4e-40
Identities = 85/176 (48%), Positives = 120/176 (68%)
Query: 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218
+PLEK+CL+ CG S G G+A VA +++GST +FGLG VGLSV G KA GA+RIIGVD
Sbjct: 1 SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60
Query: 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 278
N +K KAK G TE +NP D +P+Q+V+ +++GG D+SFE IG + TAL C
Sbjct: 61 INKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120
Query: 279 DGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKE 334
+ +G++V +GVP ++ + L LSGRT KG++FGG+K K +P LV ++ K+
Sbjct: 121 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 136 bits (342), Expect = 2e-39
Identities = 78/176 (44%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Query: 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218
A LE++CL+ CG S+G GAA N A ++ GST +FGLG VGLS G K GASRII +D
Sbjct: 1 ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60
Query: 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 278
N EK KAKA G T+ LNP + ++PVQ VI +T GG DYS +C G + A+
Sbjct: 61 INGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120
Query: 279 DGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKE 334
GWG +G E+ + GR++ G+ FGGWK +P+LV+ Y K+
Sbjct: 121 LGWGSCTVVGAK--VDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKK 174
|
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 135 bits (341), Expect = 5e-39
Identities = 71/197 (36%), Positives = 102/197 (51%), Gaps = 10/197 (5%)
Query: 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP---- 62
+VI CKAAVAW A +PLV+EE+EV+ P EIRIK++ T +C +D+
Sbjct: 3 VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGF 62
Query: 63 ------QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGV 116
+ IVESVGPGVTEF GE V+ +FI +C CR C+S K+N C
Sbjct: 63 PVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPD 122
Query: 117 MHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLG 176
+ S ++TRF+ KG+ V + S+FS+YTVV+ K+ L++ L +
Sbjct: 123 VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVND 182
Query: 177 AAWNVADISKGSTVVIF 193
A + TV+
Sbjct: 183 AIDLMKHGKCIRTVLSL 199
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 134 bits (338), Expect = 9e-39
Identities = 89/176 (50%), Positives = 120/176 (68%)
Query: 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218
APL+K+CLL CG+S G GAA N A + GS +FGLG VGL+V G K GASRIIGVD
Sbjct: 1 APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60
Query: 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 278
N +K +AK FG TE +NP D ++P+Q+V+ +TDGG DYSFECIG+ ++ AL++C
Sbjct: 61 INKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120
Query: 279 DGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKE 334
GWG++V +GV E+A ++GRT KG+ FGGWK +P LV+ Y+ K+
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 130 bits (327), Expect = 6e-37
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR-- 66
+VI CKAAVAW AG+PL +EE+EV PP+ E+RIK++ T++C +D P+ C
Sbjct: 3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 67 --------IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMH 118
IVESVG GVT+ G+ V+ ++I +C C+ C + K+N C+ + + + +
Sbjct: 63 ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM 122
Query: 119 SDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAA 178
D +RF+ KGK + HY S+FSEYTVV K+ + +++ + A
Sbjct: 123 PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAF 182
Query: 179 WNVADISKGSTVVI 192
+ TVV
Sbjct: 183 ELMHSGKSIRTVVK 196
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 128 bits (323), Expect = 2e-36
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 19/203 (9%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR-- 66
+ ITCKAAVAW +PL +E + V PP+ E+RIK++ + +C SD + + P
Sbjct: 5 KDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVI 64
Query: 67 -------IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
+VES+G GVT G+ V+ +F+ +C +CR CKS SN CE + + + +
Sbjct: 65 LGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMA 124
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
D +RF+ +GKP+Y+ S+F+EYTVV K+ + + L
Sbjct: 125 DMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL-------- 176
Query: 180 NVADISKGSTVVIFGLGTVGLSV 202
I+K ++ G G + +
Sbjct: 177 --DQINKAFELLSSGQGVRSIMI 197
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 120 bits (301), Expect = 4e-33
Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 16/199 (8%)
Query: 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR 66
Q +VI CKAA+AW G PL +EE+EV+PP+ E+RI+V+ T +C +DI A + +
Sbjct: 3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFP 62
Query: 67 ---------IVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVL----GLER 113
IVESVGPGVT F G+ V+ F +CK C+ C S +N C L
Sbjct: 63 VVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTI 122
Query: 114 RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSA 173
+ D+ +RF+ KG+ +YH+ VSSFS+YTVV +V L+ + + +
Sbjct: 123 DQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFES 182
Query: 174 GLGAAWNVADISKGSTVVI 192
A + + +G ++
Sbjct: 183 INDA---IDLMKEGKSIRT 198
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 117 bits (293), Expect = 3e-32
Identities = 88/176 (50%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218
APL+ +CLL CG+S G GAA N A + GST +FGLG VGL+ G + GA RII VD
Sbjct: 1 APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60
Query: 219 TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 278
NP+K EKAK FG T+F+NPND++EP+ QV+ ++T+GG D+S EC+G+ G++ AL+SC
Sbjct: 61 LNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120
Query: 279 DGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKE 334
GWG++V +G +VA ++GRT KGS+FGG+K K +P +V YL K+
Sbjct: 121 KGWGVSVLVGWTD-LHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 116 bits (290), Expect = 2e-31
Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 12/195 (6%)
Query: 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------ 62
+VI CKAAV W +P +EEVEV PP+ E+RIK+V T +CRSD
Sbjct: 5 KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 63 ---QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
+ IVES+G GVT G+ V+ +F +C CR CK + N C L
Sbjct: 65 AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
D +RF+ +GKP++H+ S+FS+YTVV K+ + L+ L +
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALD---PLITHVLPFEKINE 181
Query: 180 NVADISKGSTVVIFG 194
+ G ++
Sbjct: 182 GFDLLRSGESIRTIL 196
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 109 bits (272), Expect = 3e-29
Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Query: 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT 219
P+E + L CG+ G GA N ++ S+ V +G G VGLS AK GAS II VD
Sbjct: 2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61
Query: 220 NPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 279
+ E AK G T +N + IK ITDGG +++ E G ++
Sbjct: 62 VESRLELAKQLGATHVINSKT--QDPVAAIKEITDGGVNFALESTGSPEILKQG-VDALG 118
Query: 280 GWGLAVTLGVPKLKPEVAAHYG-LFLSGRTLKGSLFGGWKPKTDLPSLVNRYLKKE 334
G +G P+L L L G+T+ G + G PK +P LV Y + +
Sbjct: 119 ILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK 174
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 102 bits (255), Expect = 2e-26
Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 37/217 (17%)
Query: 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQ---------WP 62
AAV G ++ +++ PQ +E+ +KVV T +C +D+ + +
Sbjct: 3 DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGH 62
Query: 63 QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 122
+ I+E++GP VTE G+HV+ + G C C QC + C S+
Sbjct: 63 EGSGIIEAIGPNVTELQVGDHVV-LSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGN 121
Query: 123 TRFSIKGK--PVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180
+ H+ A SSF+ Y + VKV+ P +++
Sbjct: 122 HALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQL---------------- 165
Query: 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGV 217
V + + + K II +
Sbjct: 166 ---------VKFYAFDEINQAAIDSRKGITLKPIIKI 193
|
| >d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Score = 83.5 bits (205), Expect = 1e-19
Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 25/190 (13%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----------Q 63
KA A+ A QPL ++ P P +++I++ +C SD+ ++W +
Sbjct: 2 KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61
Query: 64 CCRIVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQ 122
V +VG V ++ G+ V + + CK C +C+ N C+ +
Sbjct: 62 IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPT----- 116
Query: 123 TRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV-SSIAPLEKICLLSCGLSAGLGAAWNV 181
P + +S+ VVH +++ + + + ++ L
Sbjct: 117 --------PDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDVKY 168
Query: 182 ADISKGSTVV 191
+ T+
Sbjct: 169 RFVIDNRTLT 178
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Score = 78.0 bits (191), Expect = 9e-18
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT 219
PLE +++ ++ G A +ADI GS+VV+ G+G VGL GAK RGA RIIGV +
Sbjct: 2 PLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60
Query: 220 NPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCD 279
P E AK +G T+ LN + + QV+K G D G + ++ A++
Sbjct: 61 RPICVEAAKFYGATDILNYKNGHIE-DQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKP 119
Query: 280 GWGLAVTLGVPKLKPEV---AAHYGLFLSGRTLKGSLFGGWKPKTD 322
G G+ + + +G ++ +T+KG L G + + +
Sbjct: 120 G-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAE 164
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Score = 77.2 bits (189), Expect = 2e-17
Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 11/187 (5%)
Query: 11 ITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVES 70
+ A V QPLV +E E++ I ++++ +C SD+ + + P+ +
Sbjct: 3 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 62
Query: 71 VGPGVTEFNEGEH-VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS--DQQTRFSI 127
G E + K ++ TC + + + I
Sbjct: 63 GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGI 122
Query: 128 KGKPVYHYCAVSSFSEYTVVHSG-CAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISK 186
+ +S + V+ +KVS L A + + +
Sbjct: 123 NRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRL--PLKEAN-----KALELMESRE 175
Query: 187 GSTVVIF 193
V+++
Sbjct: 176 ALKVILY 182
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 76.1 bits (186), Expect = 4e-17
Identities = 43/195 (22%), Positives = 67/195 (34%), Gaps = 39/195 (20%)
Query: 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR----- 66
T KAAV G PL +EEV+V P P ++ +K+ + +C +D+ A E WP
Sbjct: 5 TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 64
Query: 67 ------IVESVGPGVTEFNEGEHV-LTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
V +VG GVT EG+ V + C C C + CE
Sbjct: 65 GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCES----------- 113
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
+ Y ++EY + + P + G +
Sbjct: 114 ----------QQNTGYSVNGGYAEYVLADPNYVGIL----PKNVKATIHPGKLDDINQIL 159
Query: 180 NV--ADISKGSTVVI 192
+ A +G V+
Sbjct: 160 DQMRAGQIEGRIVLE 174
|
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.4 bits (174), Expect = 3e-15
Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 5/176 (2%)
Query: 20 GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVESVGPGVT-EF 78
+ + + P +I IK+ +C SDI W + V
Sbjct: 16 EDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVV 75
Query: 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAV 138
G + + + C+ + + + Y +
Sbjct: 76 KLGPKSNSGLKVGQRVGVGAQVFSCLECDR---CKNDNEPYCTKFVTTYSQPYEDGYVSQ 132
Query: 139 SSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG 194
++ Y VH V + +E + + G+ D+ T+V +
Sbjct: 133 GGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAF-ERMEKGDVRYRFTLVGYD 187
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 70.3 bits (171), Expect = 8e-15
Identities = 37/216 (17%), Positives = 66/216 (30%), Gaps = 35/216 (16%)
Query: 14 KAAVAWGAGQPLVVEEVEV-------NPPQPEEIRIKVVCTSLCRSDITAWETQWP---- 62
+ V G+G+ + V++++ + +KVV T++C SD +
Sbjct: 3 RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 61
Query: 63 -----QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVM 117
+ V G V G+ V F C CR CK + C + R G
Sbjct: 62 LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGA 121
Query: 118 HSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS--GCAVKVSSIAPLEKICLLSCGLSAGL 175
+ G +EY +V +K+ + ++ + +
Sbjct: 122 YGYVDMGDWTGG-----------QAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQV 170
Query: 176 GAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA 211
+ + A G F G V K A
Sbjct: 171 ISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 64.6 bits (156), Expect = 5e-13
Identities = 28/183 (15%), Positives = 60/183 (32%), Gaps = 12/183 (6%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVESVGP 73
+A G+PL ++E+ V P+ ++ IKV +C SD+ + ++
Sbjct: 2 RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLR------IV 55
Query: 74 GVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY 133
+ G+ + S V +G +
Sbjct: 56 EDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSP 115
Query: 134 HYCAVS---SFSEYTVV-HSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGST 189
+ ++ +++EY +V H K+ + P+ + + + N I G
Sbjct: 116 RWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFKAI--GRQ 173
Query: 190 VVI 192
V+I
Sbjct: 174 VLI 176
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Score = 62.7 bits (151), Expect = 2e-12
Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 35/193 (18%)
Query: 15 AAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------------ 62
+AV + L +E+ + P+ +E+ +++ +C SD+ +E
Sbjct: 4 SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62
Query: 63 -QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
+ V VG V +G+ V C+ C+ CK K N C
Sbjct: 63 HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC--------------- 107
Query: 122 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNV 181
+ + Y V + K+ ++++ S L + A+
Sbjct: 108 -----PDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFEA 161
Query: 182 ADISKGSTVVIFG 194
A +T+ +
Sbjct: 162 ARKKADNTIKVMI 174
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 61.9 bits (149), Expect = 4e-12
Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 5/175 (2%)
Query: 155 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRI 214
+S +E L G++A + G+ V I G+G +G Q K + +
Sbjct: 1 ISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATV 60
Query: 215 IGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTAL 274
I +D EK + A+ G ++ +PV+QV++ G + + + +G +
Sbjct: 61 IALDVKEEKLKLAERLGADHVVDARR--DPVKQVMELTRGRGVNVAMDFVGSQATVDYTP 118
Query: 275 QSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNR 329
G + +G + S + +GSL G + +L +L +
Sbjct: 119 YLLGRM-GRLIIVGYGGELRFPTIR--VISSEVSFEGSLVGNYVELHELVTLALQ 170
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Score = 61.1 bits (147), Expect = 8e-12
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 3/172 (1%)
Query: 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220
L+ + + C + A + G TVVI G G +GL A++ GA +I + +
Sbjct: 3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62
Query: 221 PEKCEKAKAFGVTEFLNPNDNN--EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCC 278
P + + A+ G LN + + E + ++ GAD+ E GD+ + +
Sbjct: 63 PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122
Query: 279 DGWGLA-VTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNR 329
G + + VP+ + L L T KG S+ +R
Sbjct: 123 RGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSR 174
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 59.6 bits (143), Expect = 2e-11
Identities = 42/195 (21%), Positives = 66/195 (33%), Gaps = 41/195 (21%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCR------- 66
KAAV +PL ++EVE E+ +++ +C +D+ A WP +
Sbjct: 2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 67 ----IVESVGPGVTEFNEGEHVLTVFIGECK-TCRQCKSDKSNTCEVLGLERRGVMHSDQ 121
IVE VGPGVT G+ V ++ C C S + CE
Sbjct: 62 EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE-------------- 107
Query: 122 QTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICL--LSCGLSAGLGAAW 179
+ Y ++EY + VK+ +E L ++ L
Sbjct: 108 -------HQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINEVFDRMLKGQI 160
Query: 180 NVADISKGSTVVIFG 194
N G V+
Sbjct: 161 N------GRVVLTLE 169
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 58.9 bits (141), Expect = 4e-11
Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 37/193 (19%)
Query: 14 KAAVAWGAGQPLVVEEVEV-NPPQPEEIRIKVVCTSLCRSDITAWETQWP---------- 62
KAA +PL +E+V+ ++ +++ +C +D+ + W
Sbjct: 1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60
Query: 63 ---QCCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHS 119
+ +E V GV +G+ V+ TC C++ + CE
Sbjct: 61 LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCEN----------- 109
Query: 120 DQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAW 179
F+E+ +K+ +E ++ L
Sbjct: 110 ----------LEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLE 159
Query: 180 NVADISKGSTVVI 192
++ G V+I
Sbjct: 160 K-GEV-LGRAVLI 170
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (140), Expect = 7e-11
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 8/147 (5%)
Query: 167 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226
LS G+ A ++ G V++ G G +G+ AKA GA++++ D + + K
Sbjct: 12 LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66
Query: 227 AKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAV 285
AK G L + + G + + EC G I + + G +
Sbjct: 67 AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATR--SGGTL 124
Query: 286 TLGVPKLKPEVAAHYGLFLSGRTLKGS 312
L + + +KG
Sbjct: 125 VLVGLGSEMTTVPLLHAAIREVDIKGV 151
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 58.3 bits (140), Expect = 9e-11
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220
+ + LS L G A A + GSTV + G G VGL+ A A+ GA+ +I D N
Sbjct: 1 IRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59
Query: 221 PEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265
P + AKA G D P+ + I + D + + +G
Sbjct: 60 PARLAHAKAQGFEIADLSLD--TPLHEQIAALLGEPEVDCAVDAVG 103
|
| >d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Score = 57.3 bits (137), Expect = 2e-10
Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 38/201 (18%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP----------Q 63
K G + L E E + ++ + S C SDI +
Sbjct: 2 KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60
Query: 64 CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQT 123
V VG V +F G+ V+ + ++ + + D
Sbjct: 61 AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV- 119
Query: 124 RFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVAD 183
F EY V+ ++A L K LS ++ ++
Sbjct: 120 -----------------FGEYFHVNDADM----NLAILPKDVDLSKLVTHVYHGFDHI-- 156
Query: 184 ISKGSTVVIFGLGTVGLSVAQ 204
+++ L A
Sbjct: 157 ---EEALLLMKDKPKDLIKAV 174
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.5 bits (135), Expect = 4e-10
Identities = 28/201 (13%), Positives = 50/201 (24%), Gaps = 38/201 (18%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------- 63
+ V G G L +E + P P E+ +++ +C SD+ WE
Sbjct: 9 LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67
Query: 64 ---CCRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSD 120
VE VG V G+ V + CK + N
Sbjct: 68 GHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLS-------------- 113
Query: 121 QQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN 180
+ + ++ K+ L L A+
Sbjct: 114 ------PSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRF--PLEKAL-EAFE 164
Query: 181 VADISKGSTVVIFGLGTVGLS 201
G +++ +
Sbjct: 165 TFKKGLGLKIML-KCDPSDQN 184
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Score = 49.2 bits (116), Expect = 8e-08
Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 11/150 (7%)
Query: 167 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226
LS G+ A A + G+TV++ G G +GL AKA GA + + + E
Sbjct: 12 LSVGV-----HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR-RLEV 65
Query: 227 AKAFGVTEFLNPNDNNEPVQQVIKR---ITDGGADYSFECIGDTGMITTALQSCCDGWGL 283
AK G L + E +I+R + + +C G+ IT + G
Sbjct: 66 AKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT-GGT 124
Query: 284 AVTLGVPKLKPEVAAHYGLFLSGRTLKGSL 313
+ +G+ V +K
Sbjct: 125 LMLVGMGSQMVTVPLVN-ACAREIDIKSVF 153
|
| >d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Score = 49.4 bits (116), Expect = 9e-08
Identities = 21/202 (10%), Positives = 44/202 (21%), Gaps = 35/202 (17%)
Query: 10 VITCKAAVAWGAGQP---LVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWETQWPQC 64
+IT +A + G+P L + E++ E+ +K + + + SDI + +P
Sbjct: 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60
Query: 65 CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTR 124
G + + + + H+
Sbjct: 61 PAKTTGFGTTEPAAP-CGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDD 119
Query: 125 FSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADI 184
IK A + T
Sbjct: 120 DFIKLPNPAQSKANGKPNGLTDAK---------------------------SIETLYDGT 152
Query: 185 SKGSTVVIFGLGT--VGLSVAQ 204
+ G+ G +
Sbjct: 153 KPLHELYQDGVANSKDGKQLIT 174
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Score = 48.4 bits (114), Expect = 2e-07
Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 13/173 (7%)
Query: 159 APLEKICLLSCGLSAGLGA--AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIG 216
L + L C AG+ G V + G+G +G + A A G + ++
Sbjct: 4 EQLAAVAPLLC---AGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVA 59
Query: 217 VDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQS 276
T+ K E AKA G E +N + +E + D+ + +
Sbjct: 60 FTTSEAKREAAKALGADEVVNSRNADEMAAHL------KSFDFILNTVAAPHNLDDFTTL 113
Query: 277 CCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPKTDLPSLVNR 329
G +G P + + L + R + GS+ GG ++
Sbjct: 114 LKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAE 165
|
| >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Score = 45.6 bits (107), Expect = 7e-07
Identities = 14/71 (19%), Positives = 23/71 (32%)
Query: 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVESVGP 73
KA V G PL + ++ + E+ ++V L +D + G
Sbjct: 2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGM 61
Query: 74 GVTEFNEGEHV 84
V EG
Sbjct: 62 EVVGVVEGRRY 72
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (103), Expect = 4e-06
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 11/161 (6%)
Query: 160 PLEKICLLSCGLSAGLGA--AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGV 217
P L C GL G V I GLG +G +K + +
Sbjct: 2 PSHLAAPLLC---GGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVI 57
Query: 218 DTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSC 277
+ K E A G ++ + + ++ S T + +
Sbjct: 58 SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS----LTDIDFNIMPKA 113
Query: 278 CDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318
G V++ +P+ ++ L ++ S G K
Sbjct: 114 MKVGGRIVSISIPEQHEMLSLKP-YGLKAVSISYSALGSIK 153
|
| >d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Score = 37.5 bits (86), Expect = 8e-04
Identities = 17/185 (9%), Positives = 37/185 (20%), Gaps = 36/185 (19%)
Query: 20 GAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVESVGPGVTEFN 79
+ V+ + + + IKV + + D A +
Sbjct: 13 ADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREY------------ 60
Query: 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVS 139
+ G + I
Sbjct: 61 ---------------------PLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDG 99
Query: 140 SFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVG 199
SEY V V + L++ + + + + G+ I G
Sbjct: 100 GLSEYASVPGDWLVPLPQNLSLKEAMVDQL---LTIVDREVSLEETPGALKDILQNRIQG 156
Query: 200 LSVAQ 204
+ +
Sbjct: 157 RVIVK 161
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.3 bits (85), Expect = 0.001
Identities = 17/152 (11%), Positives = 32/152 (21%), Gaps = 5/152 (3%)
Query: 167 LSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEK 226
+ V +S G V+I G T ++
Sbjct: 6 FGVAYLTAWHSLCEVGRLSPGERVLIHSAT--GGVGMAAVSIAKMIGARIYTTAGSDAKR 63
Query: 227 AKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAV 285
+ + + I +TDG G D + G G +
Sbjct: 64 EMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA--GEAIQRGVQILAPGGRFI 121
Query: 286 TLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGW 317
LG + + + +
Sbjct: 122 ELGKKDVYADASLGLAALAKSASFSVVDLDLN 153
|
| >d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Score = 36.4 bits (83), Expect = 0.001
Identities = 12/94 (12%), Positives = 23/94 (24%), Gaps = 11/94 (11%)
Query: 12 TCKAAVAWGAGQPLVVEEVEVNPPQPE--EIRIKVVCTSLCRSDITAWETQWPQC----- 64
+A V ++ ++ ++V +S+ D A
Sbjct: 3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPF 62
Query: 65 ----CRIVESVGPGVTEFNEGEHVLTVFIGECKT 94
V F EG+ V+ T
Sbjct: 63 VPGIDLAGVVVSSQHPRFREGDEVIATGYEIGVT 96
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (87), Expect = 0.002
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 1/91 (1%)
Query: 173 AGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232
A + + T + G G VGL + GA + + V +
Sbjct: 22 ASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGESDGSIWNPDGIDP 80
Query: 233 TEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263
E + + + K G+ +C
Sbjct: 81 KELEDFKLQHGTILGFPKAKIYEGSILEVDC 111
|
| >d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.003
Identities = 21/194 (10%), Positives = 51/194 (26%), Gaps = 51/194 (26%)
Query: 14 KAAVAWGAGQPLV---VEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQCCRIVES 70
+A + G P V ++ V P+ ++ IKV + + + + + +
Sbjct: 4 RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 63
Query: 71 VGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGK 130
G V E +G+ + + + + G +
Sbjct: 64 PGSDVAGVIEA-------VGDNASAFKKGDRVFTSSTISGGYAEYALA------------ 104
Query: 131 PVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTV 190
+ L L +G+ + + +++
Sbjct: 105 -----------------------------ADHTVYKLPEKLKPVIGSQYPLEKVAEAHEN 135
Query: 191 VIFGLGTVGLSVAQ 204
+I G G G +
Sbjct: 136 IIHGSGATGKMILL 149
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Score = 35.7 bits (81), Expect = 0.004
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 189 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAK 228
V+I G+G +G S A+ + G +I G D NPE KA
Sbjct: 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV 43
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| d1cdoa1 | 199 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 100.0 | |
| d2fzwa1 | 197 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 100.0 | |
| d1e3ia1 | 202 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 100.0 | |
| d1f8fa1 | 194 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 100.0 | |
| d1e3ja1 | 178 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 99.97 | |
| d1llua1 | 175 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.97 | |
| d1p0fa1 | 198 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 99.97 | |
| d1h2ba1 | 171 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 99.97 | |
| d2jhfa1 | 198 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 99.97 | |
| d1pl8a1 | 185 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 99.97 | |
| d1vj0a1 | 184 | Hypothetical protein TM0436 {Thermotoga maritima [ | 99.96 | |
| d1kola1 | 201 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 99.96 | |
| d1piwa1 | 192 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 99.96 | |
| d1jvba1 | 177 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 99.96 | |
| d1rjwa1 | 171 | Alcohol dehydrogenase {Bacillus stearothermophilus | 99.96 | |
| d1jqba1 | 177 | Bacterial secondary alcohol dehydrogenase {Clostri | 99.96 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 99.95 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 99.95 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 99.95 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 99.95 | |
| d1uufa1 | 179 | Hypothetical protein YahK {Escherichia coli [TaxId | 99.95 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.94 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.94 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.94 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 99.94 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 99.94 | |
| d1yb5a1 | 150 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.94 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 99.93 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 99.93 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 99.93 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 99.93 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.92 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 99.92 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 99.92 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.92 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 99.92 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 99.92 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.92 | |
| d1qora1 | 147 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.91 | |
| d1xa0a1 | 152 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.91 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 99.91 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 99.9 | |
| d1iz0a1 | 131 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.9 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.89 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 99.88 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 99.88 | |
| d1gu7a1 | 175 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 99.87 | |
| d1tt7a1 | 162 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 99.87 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 99.87 | |
| d1o89a1 | 146 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.86 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.83 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 99.81 | |
| d1vj1a1 | 166 | Putative zinc-binding alcohol dehydrogenase {Mouse | 99.59 | |
| d1v3va1 | 147 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 99.54 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.5 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.08 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.05 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.81 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.8 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 97.7 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 97.58 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 97.55 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 97.47 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.42 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.41 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 97.39 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 97.37 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 97.35 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.31 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.31 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 97.29 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 97.25 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.21 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 97.21 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 97.19 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 97.14 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 97.13 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.11 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 97.11 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 97.11 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.11 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 97.1 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.08 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 97.04 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.02 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 97.01 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 96.98 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 96.98 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.95 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 96.95 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.94 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 96.91 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.9 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 96.89 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.88 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.87 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.87 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.85 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 96.84 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 96.83 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 96.82 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.81 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 96.8 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 96.78 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 96.76 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 96.74 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 96.72 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.71 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.71 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 96.71 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.7 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 96.65 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 96.63 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 96.62 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.61 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 96.61 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 96.6 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 96.6 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 96.59 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 96.59 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 96.57 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 96.55 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 96.51 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 96.51 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.49 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.48 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 96.47 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.47 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 96.46 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 96.44 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 96.42 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 96.41 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.4 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 96.37 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 96.36 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 96.35 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 96.33 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.33 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 96.32 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 96.27 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.24 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 96.22 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.2 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.19 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 96.01 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.9 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 95.85 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 95.84 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 95.82 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 95.82 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.77 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.66 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.64 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 95.52 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.46 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 95.41 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 95.41 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 95.34 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.31 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 95.29 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 95.29 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 95.11 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.09 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.08 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 94.93 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 94.81 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 94.81 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.78 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 94.75 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.74 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.72 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.69 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.66 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.65 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 94.62 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 94.62 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 94.58 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 94.55 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 94.52 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 94.52 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.48 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 94.43 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.39 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.39 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.38 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.32 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 94.29 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.23 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 94.22 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.09 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.08 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.04 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.04 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 94.03 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 93.99 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 93.96 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.93 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.91 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 93.9 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 93.84 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 93.8 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.77 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 93.71 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.7 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.69 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 93.57 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 93.56 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.53 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 93.52 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.5 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 93.5 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.47 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.44 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 93.43 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 93.38 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.36 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.34 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 93.31 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 93.3 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.22 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.2 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 93.17 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 93.11 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 93.08 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.99 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 92.87 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 92.87 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.82 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 92.71 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 92.7 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 92.65 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 92.64 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 92.63 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.62 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.62 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 92.56 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 92.42 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.28 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.26 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.25 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 92.24 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 92.23 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 92.1 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 92.02 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.02 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 91.89 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 91.83 | |
| d1p3ha_ | 99 | Chaperonin-10 (GroES) {Mycobacterium tuberculosis | 91.76 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 91.75 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 91.75 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.75 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 91.74 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 91.67 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 91.35 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 91.25 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 91.23 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 91.21 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 91.21 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 91.19 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 91.16 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 91.13 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.11 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 91.08 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.0 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 90.82 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.8 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 90.79 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 90.76 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 90.72 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 90.64 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 90.6 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.59 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 90.53 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.49 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 90.43 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 90.38 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 90.3 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 90.28 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.1 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 90.09 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.08 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.06 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 89.93 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 89.92 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 89.74 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 89.71 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 89.69 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 89.59 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 89.58 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 89.58 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 89.55 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 89.51 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 89.49 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.43 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 89.43 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.39 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.39 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 89.3 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 89.16 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 89.14 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 89.03 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 88.92 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 88.91 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 88.9 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 88.75 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 88.69 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 88.53 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 88.47 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 88.39 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 88.37 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 88.21 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 88.14 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 88.0 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 87.95 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 87.78 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 87.73 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 87.71 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 87.56 | |
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 87.36 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 87.29 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 87.27 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 87.14 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 87.11 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 87.08 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 87.04 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.93 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 86.91 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 86.84 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 86.68 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.61 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 86.57 | |
| d1aono_ | 97 | Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56 | 86.52 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.46 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 86.46 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 86.43 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 86.42 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 86.39 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 86.34 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 86.33 | |
| d2ax3a2 | 211 | Hypothetical protein TM0922, N-terminal domain {Th | 86.29 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 86.25 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 86.24 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 86.03 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 85.75 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 85.74 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 85.73 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 85.57 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 85.45 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 85.42 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 85.26 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 85.17 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 85.01 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 85.0 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 84.97 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 84.92 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 84.91 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 84.87 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 84.85 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 84.83 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 84.8 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 84.64 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.62 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 84.46 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 84.22 | |
| d1we3o_ | 96 | Chaperonin-10 (GroES) {Thermus thermophilus [TaxId | 84.08 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 83.9 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 83.69 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 83.65 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 83.6 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 83.31 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 83.18 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 83.05 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 82.62 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 82.58 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 82.5 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 82.47 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.03 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 81.97 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 81.85 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 81.85 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 81.65 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 81.5 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 81.49 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 81.47 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 81.29 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 81.15 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 80.54 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 80.39 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 80.36 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 80.28 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 80.25 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.16 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 80.08 |
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=100.00 E-value=6.1e-35 Score=247.20 Aligned_cols=187 Identities=38% Similarity=0.583 Sum_probs=165.9
Q ss_pred CccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCC
Q 017460 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVT 76 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~ 76 (371)
..+++++||++++++++||++++++.|+|+++||+|||.|+|||++|++.+.|.... ++|+|+++|++++
T Consensus 3 ~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v~ 82 (199)
T d1cdoa1 3 VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVT 82 (199)
T ss_dssp TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTCC
T ss_pred CCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCCc
Confidence 456899999999999999999999999999999999999999999999999886543 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
++++||||++.+..+|+.|.+|+.+++++|.+.......-....+..+...+|...++..+.|+||||+++++..++++|
T Consensus 83 ~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP 162 (199)
T d1cdoa1 83 EFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKID 162 (199)
T ss_dssp SCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECC
T ss_pred eecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECC
Confidence 99999999999999999999999999999988765542222255666666777777777777899999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF 193 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~ 193 (371)
+++++++++++.+++.|+++++......+.|++|||+
T Consensus 163 ~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~ 199 (199)
T d1cdoa1 163 PSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 199 (199)
T ss_dssp TTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 9999999999999999999999777778899999984
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=100.00 E-value=1e-33 Score=238.79 Aligned_cols=185 Identities=37% Similarity=0.656 Sum_probs=162.6
Q ss_pred ccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCC
Q 017460 8 PQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTE 77 (371)
Q Consensus 8 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~ 77 (371)
|.+++|||+++++++++|+++++|.|+|+++||||||.++|||++|+++++|.++. ++|+|+++|++|+.
T Consensus 2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~ 81 (197)
T d2fzwa1 2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK 81 (197)
T ss_dssp CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence 67899999999999999999999999999999999999999999999999986543 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+++||||++.+..+|+.|.+|+.++++.|.+..... .|.. .+...++..+|....+..+.|+||||+++++..++++|
T Consensus 82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp 160 (197)
T d2fzwa1 82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID 160 (197)
T ss_dssp CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred cCCCCEEEEccccccccccccccCccccCcccccccccccc-CCccceeccCCcceecccccccceeEEEechHHEEECC
Confidence 999999999999999999999999999998755443 3333 55555666777777777778999999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF 193 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~ 193 (371)
+++++++++.+.+++.+++.++.....-+.+++|||+
T Consensus 161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi 197 (197)
T d2fzwa1 161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 197 (197)
T ss_dssp TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence 9999999999999999999987444445678888874
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=100.00 E-value=1.6e-33 Score=239.28 Aligned_cols=185 Identities=38% Similarity=0.687 Sum_probs=160.3
Q ss_pred CCccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCC
Q 017460 6 KQPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVT 76 (371)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~ 76 (371)
++.+++||||++++++++||+++++|.|+|+++||||||.++|||++|+++++|.++. ++|+|+++|++|+
T Consensus 2 ~~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~~~P~v~GHE~~G~V~~vG~~V~ 81 (202)
T d1e3ia1 2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVT 81 (202)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred CCCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecccccccccccccceEEeeecCCce
Confidence 4668999999999999999999999999999999999999999999999999997764 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCccccccccc----ccccCCCccceeccCcccccccCccceeeEEEeeCCce
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERR----GVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCA 152 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~----g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~ 152 (371)
++++||||++.+...|+.|.+|+.+++++|.+...... +.....+...+..+|..+++..+.|+|+||+++++..+
T Consensus 82 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l 161 (202)
T d1e3ia1 82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL 161 (202)
T ss_dssp SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred eccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhE
Confidence 99999999999999999999999999999987665331 11113444556667777777778899999999999999
Q ss_pred EECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE
Q 017460 153 VKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF 193 (371)
Q Consensus 153 ~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~ 193 (371)
+++|++++++.++++.+++.+++.++ + .+++|++|.|+
T Consensus 162 ~~lP~~~~~~~~~~~~~~~~~~~~a~-~--~~k~G~~V~vi 199 (202)
T d1e3ia1 162 ARVDDEFDLDLLVTHALPFESINDAI-D--LMKEGKSIRTI 199 (202)
T ss_dssp EECCTTSCGGGGEEEEEEGGGHHHHH-H--HHHTTCCSEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH-H--hCCCCCEEEEE
Confidence 99999999999888888888888876 3 25689998775
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=100.00 E-value=1.1e-32 Score=231.60 Aligned_cols=181 Identities=26% Similarity=0.478 Sum_probs=148.1
Q ss_pred ceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCCCCC
Q 017460 10 VITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~~~~ 80 (371)
+++|+|+++.+.+++|+++++|.|+|+++|||||+.+++||++|++++.|.++. ++|+|+++|+++++|++
T Consensus 1 ~k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~~~P~i~GHE~~G~V~~vG~~v~~~~v 80 (194)
T d1f8fa1 1 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQV 80 (194)
T ss_dssp CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred CceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccccCCcccccceEEEeeecCccceeEcc
Confidence 478999999999999999999999999999999999999999999999988753 69999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCccccccc-ccccccCCCccceecc--CcccccccCccceeeEEEeeCCceEECCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLE-RRGVMHSDQQTRFSIK--GKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~-~~g~~~~~g~~~~~~~--~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
||||+. ++.+|++|.+|+++++++|.+.... ..|.. .+|...+... +....+..+.|+|+||+++++..++++|+
T Consensus 81 GDrVv~-~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~ 158 (194)
T d1f8fa1 81 GDHVVL-SYGYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK 158 (194)
T ss_dssp TCEEEE-CCCCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred Cceeee-ecccccCChhhhCCCcccccccccceecccc-ccceeeeecCCceeeccccccccccceeEEEehHHEEECCC
Confidence 999955 5568999999999999999975332 23433 4454433322 22344455668999999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEE
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGV 217 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~ 217 (371)
+++++++ ++|.|+|++|++|+|+++.+|+++|+++
T Consensus 159 ~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV 193 (194)
T d1f8fa1 159 DFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI 193 (194)
T ss_dssp TCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred CCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 8875443 3456889999999999999999566654
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=99.97 E-value=1.4e-32 Score=228.92 Aligned_cols=160 Identities=20% Similarity=0.313 Sum_probs=140.1
Q ss_pred eEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-------------eEEEEEeeCCCCCCCCC
Q 017460 14 KAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-------------CCRIVESVGPGVTEFNE 80 (371)
Q Consensus 14 ~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-------------~~G~V~~~G~~v~~~~~ 80 (371)
.|++++++++ |+++++|.|+|+++|||||+.+++||++|++++++.... ++|+|+++|+++++|++
T Consensus 3 maAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~ 81 (178)
T d1e3ja1 3 LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK 81 (178)
T ss_dssp EEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCT
T ss_pred eEEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCC
Confidence 3444567766 999999999999999999999999999999888753211 69999999999999999
Q ss_pred CCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 81 GEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 81 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
||||++.+...|+.|+.|+.+++++|.+..+.. .... .|+|+||++++++.++++|++++
T Consensus 82 GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~--~~~~------------------~G~~aey~~v~~~~~~~iP~~~~ 141 (178)
T d1e3ja1 82 GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCA--TPPD------------------DGNLARYYVHAADFCHKLPDNCN 141 (178)
T ss_dssp TCEEEECCEECCSSSHHHHTTCGGGCTTCEETT--BTTB------------------CCSCBSEEEEEGGGEEECCTTCC
T ss_pred CCEEEECcccccCCccccccCCcccccccccee--cccc------------------ccccceeeeecccceeeCCCCCC
Confidence 999999999999999999999999998776532 1101 25899999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL 195 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga 195 (371)
+++++++++++.|+|+++ +.+++++|++|||+|+
T Consensus 142 ~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~ 175 (178)
T d1e3ja1 142 VKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS 175 (178)
T ss_dssp CGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred HHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence 999999999999999997 7889999999999974
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.3e-31 Score=222.47 Aligned_cols=162 Identities=25% Similarity=0.397 Sum_probs=143.2
Q ss_pred cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCC
Q 017460 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTE 77 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~ 77 (371)
.|.||||+++++++++|+++++|.|.|+++||+|||.+++||++|++.++|.++. ++|+|+++|+++++
T Consensus 2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~ 81 (175)
T d1llua1 2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR 81 (175)
T ss_dssp CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence 5789999999999999999999999999999999999999999999999987643 69999999999999
Q ss_pred CCCCCEEEeee-cCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 78 FNEGEHVLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 78 ~~~Gd~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+++||||+..+ ...|+.|.+|+.+++++|.+... .|+. .+ |+|+||++++++.++++|
T Consensus 82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~--~G~~-~~------------------gg~aey~~v~~~~~~~iP 140 (175)
T d1llua1 82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN--TGYS-VN------------------GGYAEYVLADPNYVGILP 140 (175)
T ss_dssp CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE--BTTT-BC------------------CSSBSEEEECTTTSEECC
T ss_pred cccCCEEEeccccccCCccccccCCcccccccccc--cccc-cc------------------cccceEEEechHHEEECC
Confidence 99999998865 46799999999999999988775 3333 33 489999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF 193 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~ 193 (371)
++++++.++++.+++.++++.+ +. ...+|++|||+
T Consensus 141 d~l~~~~a~~~~~~~~t~~~~~-~~-g~~~G~~VLVl 175 (175)
T d1llua1 141 KNVKATIHPGKLDDINQILDQM-RA-GQIEGRIVLEM 175 (175)
T ss_dssp TTCCCCEEEECGGGHHHHHHHH-HT-TCCSSEEEEEC
T ss_pred CCCChhHHHHHHhHHHHHHHHH-Hh-CCCCCCEEEeC
Confidence 9999998888888999999876 43 44579999984
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=99.97 E-value=6.3e-32 Score=227.90 Aligned_cols=184 Identities=34% Similarity=0.642 Sum_probs=154.0
Q ss_pred CccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCC
Q 017460 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTE 77 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~ 77 (371)
+.+..||||+++++++++|+++++|.|+|+++||||||.|+|||++|+++++|.++. ++|+|+++|++++.
T Consensus 3 ~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~~~P~i~GHE~~G~Vv~~G~~v~~ 82 (198)
T d1p0fa1 3 AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILGHEAVGVVESIGAGVTC 82 (198)
T ss_dssp TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSBCCCCCEEEEEEEECTTCCS
T ss_pred CCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeeccccccccccceeeeeeeeecCccccc
Confidence 456789999999999999999999999999999999999999999999999987754 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
+++||||++.+..+|+.|.+|+++++++|........+.....+..++...+.......+.|+|+||+.+++..++++|+
T Consensus 83 ~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~ 162 (198)
T d1p0fa1 83 VKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDP 162 (198)
T ss_dssp CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECT
T ss_pred CcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCC
Confidence 99999999999999999999999999999987765533222555556666776676666778999999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHH
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGL 200 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~ 200 (371)
+++...++...+.+.+ +.++++|||.|+|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~----------v~~~~~vlv~G~G~iGl 195 (198)
T d1p0fa1 163 KINVNFLVSTKLTLDQ----------INKAFELLSSGQGVRSI 195 (198)
T ss_dssp TSCGGGGEEEEECGGG----------HHHHHHHTTTSSCSEEE
T ss_pred CCCHHHHHHhhcchhh----------cCCCCEEEEECCCcceE
Confidence 9987766554433322 33445678888888775
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.97 E-value=1e-31 Score=221.64 Aligned_cols=156 Identities=21% Similarity=0.345 Sum_probs=140.9
Q ss_pred eEEEEecCCCCeEEEEeecCCC-CCCcEEEEEeeecCCcchhhhhcCCCCC-------------eEEEEEeeCCCCCCCC
Q 017460 14 KAAVAWGAGQPLVVEEVEVNPP-QPEEIRIKVVCTSLCRSDITAWETQWPQ-------------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 14 ~a~~~~~~~~~l~~~~~~~p~~-~~~evlV~v~~~~i~~~D~~~~~g~~~~-------------~~G~V~~~G~~v~~~~ 79 (371)
||++++++++||++++++.|++ .++||||||.|++||++|++.++|.++. ++|+|+++|+++++++
T Consensus 1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~ 80 (171)
T d1h2ba1 1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE 80 (171)
T ss_dssp CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence 7999999999999999999987 6899999999999999999998886431 6999999999999999
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||||++.+...|+.|..|+.+++++|.+.... |+. .+ |+||||+.++++.++++|+++
T Consensus 81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~--g~~-~~------------------G~~aey~~v~~~~~~~iP~~~ 139 (171)
T d1h2ba1 81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEFP--GLN-ID------------------GGFAEFMRTSHRSVIKLPKDV 139 (171)
T ss_dssp TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCB--TTT-BC------------------CSSBSEEEECGGGEEECCTTC
T ss_pred CCCEEEEcCccCCCCcccccccccccccccccc--eee-cc------------------cccceeeeehhhcceecCCCC
Confidence 999999999999999999999999999887753 333 33 489999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEE
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVI 192 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI 192 (371)
+++.++++.++++|+++++ +.+++ .|++|||
T Consensus 140 ~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI 170 (171)
T d1h2ba1 140 RVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI 170 (171)
T ss_dssp CCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred CHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence 9988888888999999998 66778 8999998
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=99.97 E-value=9.9e-31 Score=221.16 Aligned_cols=183 Identities=36% Similarity=0.620 Sum_probs=153.6
Q ss_pred CccceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCCC
Q 017460 7 QPQVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVTE 77 (371)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~~ 77 (371)
..+.++|||+++++++++|++++++.|+|+++||||||.++|||++|+++++|.++. ++|+|+++|+++++
T Consensus 3 ~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~~~P~i~GHE~~G~Vv~vG~~v~~ 82 (198)
T d2jhfa1 3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTT 82 (198)
T ss_dssp TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCSSBCCCCSEEEEEEEECTTCCS
T ss_pred CCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCcccccceecccceeEEEEecCccccC
Confidence 456899999999999999999999999999999999999999999999999997754 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
+++||||++.+..+|+.|.+|+.+++++|....... .|.. ..+...+..+|...++..+.|+|+||+++++..++++|
T Consensus 83 ~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p 161 (198)
T d2jhfa1 83 VRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID 161 (198)
T ss_dssp CCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred cCCCCEEEEeeeecccccccccCCccceeccccccccCccc-cCccccccccCceeccCCCCCcccCeEEeCHHHeEECC
Confidence 999999999999999999999999999999887644 3333 44444555667777777778999999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF 193 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~ 193 (371)
+.++++.++....++.....+ ...+++|++|+|+
T Consensus 162 ~~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi 195 (198)
T d2jhfa1 162 AAFALDPLITHVLPFEKINEG---FDLLRSGESIRTI 195 (198)
T ss_dssp TTSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEE
T ss_pred CCCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEE
Confidence 999887766555454433322 2346789998876
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-30 Score=218.28 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=138.1
Q ss_pred eeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC-------C------eEEEEEeeCCCCCCC
Q 017460 12 TCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP-------Q------CCRIVESVGPGVTEF 78 (371)
Q Consensus 12 ~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~-------~------~~G~V~~~G~~v~~~ 78 (371)
.+.|++++++++ |+++++|.|+|+++||+|||.+++||++|++++++... + ++|+|+++|+++++|
T Consensus 7 ~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~ 85 (185)
T d1pl8a1 7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL 85 (185)
T ss_dssp CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred CCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence 567999999987 99999999999999999999999999999999874321 1 699999999999999
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
++||||++.+..+|+.|++|+.+++++|.+..+.. .... .|+|+||++++++.++++|++
T Consensus 86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g--~~~~------------------~G~~aey~~~~~~~~~~lP~~ 145 (185)
T d1pl8a1 86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCA--TPPD------------------DGNLCRFYKHNAAFCYKLPDN 145 (185)
T ss_dssp CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETT--BTTB------------------CCSCBSEEEEEGGGEEECCTT
T ss_pred cccccceecceeccccchhhccchhchhccceeee--cccc------------------cccceEEEEEchHHEEECCCC
Confidence 99999999999999999999999999998877532 1101 248999999999999999999
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccCh
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGT 197 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~ 197 (371)
++++++++. ++.+|++++ +..+++.|++||| |+|+
T Consensus 146 ~~~~~aa~~--pl~~a~~a~-~~~~~~~G~~VlI-g~GP 180 (185)
T d1pl8a1 146 VKPLVTHRF--PLEKALEAF-ETFKKGLGLKIML-KCDP 180 (185)
T ss_dssp CGGGEEEEE--EGGGHHHHH-HHHHTTCCSEEEE-ECCT
T ss_pred CCHHHHHHH--HHHHHHHHH-HHhCCCCCCEEEE-EeCC
Confidence 999998765 456788875 6778999999998 5543
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=4.8e-30 Score=212.89 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=136.3
Q ss_pred cceeeeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCC--
Q 017460 9 QVITCKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVT-- 76 (371)
Q Consensus 9 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~-- 76 (371)
|.++|||+++++++++|++++++.|+++++||||||.++|||++|+++++|.++. ++|+|+++|++|+
T Consensus 1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~ 80 (184)
T d1vj0a1 1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDL 80 (184)
T ss_dssp CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCT
T ss_pred CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccccc
Confidence 4688999999999999999999999999999999999999999999999997753 6999999999986
Q ss_pred ---CCCCCCEEEeeecCCCCCCccccCCCCC-CcccccccccccccCCCccceeccCcccccccCccceeeEEEee-CCc
Q 017460 77 ---EFNEGEHVLTVFIGECKTCRQCKSDKSN-TCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVH-SGC 151 (371)
Q Consensus 77 ---~~~~Gd~V~~~~~~~~~~~~~c~~~~~~-~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~-~~~ 151 (371)
.+++||+|++.+..+|+.|.+|+.+++. .|.+... .|+. . +...+ ..-.|+|+||++++ +..
T Consensus 81 ~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~--~G~~-~-~~~~~---------~~~~Gg~ae~~~v~~~~~ 147 (184)
T d1vj0a1 81 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV--YGIN-R-GCSEY---------PHLRGCYSSHIVLDPETD 147 (184)
T ss_dssp TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE--TTTT-C-CSSST---------TCCCSSSBSEEEECTTCC
T ss_pred ccccccceeeeEeccccccccChhHhCccccccCCCcee--eccC-C-CCCCC---------CCcceeCcCcEEechhHc
Confidence 4689999999999999999999999865 5877654 3322 0 00000 00135899999996 579
Q ss_pred eEECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE
Q 017460 152 AVKVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF 193 (371)
Q Consensus 152 ~~~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~ 193 (371)
++++|+++++++ ++++|++++ +.+++++|++|||+
T Consensus 148 v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~ 182 (184)
T d1vj0a1 148 VLKVSEKITHRL------PLKEANKAL-ELMESREALKVILY 182 (184)
T ss_dssp EEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred EEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence 999999998653 456788876 78899999999997
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.96 E-value=4.4e-32 Score=228.91 Aligned_cols=182 Identities=20% Similarity=0.219 Sum_probs=147.4
Q ss_pred eeEEEEecCCCCeEEEEeecCCCC-------CCcEEEEEeeecCCcchhhhhcCCCCC---------eEEEEEeeCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQ-------PEEIRIKVVCTSLCRSDITAWETQWPQ---------CCRIVESVGPGVT 76 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~-------~~evlV~v~~~~i~~~D~~~~~g~~~~---------~~G~V~~~G~~v~ 76 (371)
+||++++++++ ++++++|.|+++ ++||+|||.+++||++|+++++|.++. ++|+|+++|++|+
T Consensus 2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~~~P~v~GHE~~G~Vv~vG~~V~ 80 (201)
T d1kola1 2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGRDVE 80 (201)
T ss_dssp EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCCCTTCBCCCCEEEEEEEECTTCC
T ss_pred cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcccccceeccceeeeeeeccccccc
Confidence 59999999997 999999999763 599999999999999999999987764 6999999999999
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeC--CceEE
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS--GCAVK 154 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~--~~~~~ 154 (371)
+|++||||++.+..+|+.|.+|++++++.|........+.. .|.... ....|+|+||++++. ..+++
T Consensus 81 ~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~--~g~~~~---------~~~~Gg~aeyv~vp~~~~~l~~ 149 (201)
T d1kola1 81 NLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGA--YGYVDM---------GDWTGGQAEYVLVPYADFNLLK 149 (201)
T ss_dssp SCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEE--BTCTTS---------CCBCCCSBSEEEESSHHHHCEE
T ss_pred cccccceeEEeeeeeccCChhhhCCCccccccccccccccc--ccccCC---------CccccccccEEEeehHHCeEEE
Confidence 99999999999999999999999999999987765432211 000000 001268999999985 37999
Q ss_pred CCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCC
Q 017460 155 VSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA 211 (371)
Q Consensus 155 ~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~ 211 (371)
||++.+..+++++..++.++++++ ...+.+.++ +|+|++|++++|+||++|+
T Consensus 150 iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~G~vG~~~i~~ak~~GA 201 (201)
T d1kola1 150 LPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDAGVPKKFVIDPHKTFSA 201 (201)
T ss_dssp CSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence 999877777777777888888886 444444342 5899999999999999885
|
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.1e-29 Score=210.74 Aligned_cols=171 Identities=18% Similarity=0.264 Sum_probs=142.4
Q ss_pred ccceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCC
Q 017460 8 PQVITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGV 75 (371)
Q Consensus 8 ~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v 75 (371)
+.|.+|||+.++++++. +++.+.+.++++++||+|||.|+|||++|++.++|.++. ++|+|+++|+++
T Consensus 2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v 81 (192)
T d1piwa1 2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS 81 (192)
T ss_dssp CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence 34679999999887754 677777777789999999999999999999999987653 699999999988
Q ss_pred -CCCCCCCEEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceE
Q 017460 76 -TEFNEGEHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV 153 (371)
Q Consensus 76 -~~~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~ 153 (371)
+.+++||||...+. ..|+.|.+|+.+++++|.+......+.. ..| ....|+||||++++++.++
T Consensus 82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~-~~G-------------~~~~Ggfaey~~v~~~~~~ 147 (192)
T d1piwa1 82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPY-EDG-------------YVSQGGYANYVRVHEHFVV 147 (192)
T ss_dssp CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBC-TTS-------------CBCCCSSBSEEEEEGGGEE
T ss_pred ccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccccccc-ccc-------------cccccceeeEEEeehHHeE
Confidence 56999999987764 5799999999999999998876442222 112 1113699999999999999
Q ss_pred ECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE
Q 017460 154 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF 193 (371)
Q Consensus 154 ~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~ 193 (371)
++|+++++++|+.+.+.+.+|++++ +.++++++++|||.
T Consensus 148 ~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~ 186 (192)
T d1piwa1 148 PIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY 186 (192)
T ss_dssp ECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence 9999999998877765678999987 78999999999985
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.96 E-value=2.2e-29 Score=209.28 Aligned_cols=157 Identities=20% Similarity=0.349 Sum_probs=134.2
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCC------------C------eEEEEEeeCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWP------------Q------CCRIVESVGPG 74 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~------------~------~~G~V~~~G~~ 74 (371)
|||++++++|++|++++++.|+|++|||+||+.++|||++|+++++|.++ + ++|+|+++|++
T Consensus 1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~ 80 (177)
T d1jvba1 1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE 80 (177)
T ss_dssp CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence 89999999999999999999999999999999999999999999998532 1 69999999999
Q ss_pred CCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCC-ceE
Q 017460 75 VTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSG-CAV 153 (371)
Q Consensus 75 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~-~~~ 153 (371)
+++|++||||++.+...|+.|.+|+.++++.|.+.... |+. .+ |+||||+++++. .++
T Consensus 81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~--g~~-~~------------------G~~aey~~vp~~~~~~ 139 (177)
T d1jvba1 81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL--GIN-FD------------------GAYAEYVIVPHYKYMY 139 (177)
T ss_dssp CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEB--TTT-BC------------------CSSBSEEEESCGGGEE
T ss_pred ccccccCceEeeeeccccccccccccccccccCCccee--eec-cc------------------cccccEEEEEhHHeEE
Confidence 99999999999999999999999999999999987753 333 33 489999999754 566
Q ss_pred ECCCCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEE
Q 017460 154 KVSSIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVI 192 (371)
Q Consensus 154 ~~P~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI 192 (371)
++|+..+.+.|+....++.++++++ +.+++ .|++|||
T Consensus 140 ~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI 176 (177)
T d1jvba1 140 KLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI 176 (177)
T ss_dssp ECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred ECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence 7777666555555556888999987 56666 5899987
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.96 E-value=2.5e-29 Score=207.82 Aligned_cols=157 Identities=27% Similarity=0.454 Sum_probs=133.5
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~~G 81 (371)
|||+++++++++|+++++|.|+|++|||||||++++||++|++++++.... ++|+|+++|++++.+++|
T Consensus 1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG 80 (171)
T d1rjwa1 1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG 80 (171)
T ss_dssp CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence 899999999999999999999999999999999999999999988764322 699999999999999999
Q ss_pred CEEEeeec-CCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCC
Q 017460 82 EHVLTVFI-GECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAP 160 (371)
Q Consensus 82 d~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~ 160 (371)
|||++.+. ..|+.|..|+.+.+++|.+.... |.. .+ |+||||+++++++++++|++++
T Consensus 81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~-~~------------------G~~aey~~v~~~~~~~iP~~~~ 139 (171)
T d1rjwa1 81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKNA--GYS-VD------------------GGYAEYCRAAADYVVKIPDNTI 139 (171)
T ss_dssp CEEEECSEEECCSCSHHHHTTCGGGCTTCEEB--TTT-BC------------------CSSBSEEEEEGGGCEECCTTCC
T ss_pred eEEeeccccccccccccccCCCcccccccccc--cee-cc------------------CccccceEecHHHEEECCCCCC
Confidence 99987664 56999999999999999987753 332 23 4899999999999999999999
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG 194 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G 194 (371)
++.|++ . .+.++++.+ ..+.+ +|++|||+|
T Consensus 140 ~e~A~l-~-~~~~~~~~~-~~~~~-~G~tVlViG 169 (171)
T d1rjwa1 140 IEVQPL-E-KINEVFDRM-LKGQI-NGRVVLTLE 169 (171)
T ss_dssp EEEEEG-G-GHHHHHHHH-HTTCC-SSEEEEECC
T ss_pred HHHHHH-H-HHHHHHHHH-HhcCC-CCCEEEEeC
Confidence 876654 3 456777766 34555 599999987
|
| >d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.96 E-value=3.9e-31 Score=218.53 Aligned_cols=160 Identities=17% Similarity=0.134 Sum_probs=129.7
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcC-CCCC---------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWET-QWPQ---------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g-~~~~---------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||++++++++ ++++++|.|+++++||+||++++|||++|++.+++ ..+. ++|+|+++|+++++|++||
T Consensus 1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd 79 (177)
T d1jqba1 1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD 79 (177)
T ss_dssp CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence 89999999987 99999999999999999999999999999987754 3322 6999999999999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCcccccccc-cccccCCCccceeccCcccccccCccceeeEEEeeC--CceEECCCCC
Q 017460 83 HVLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHS--GCAVKVSSIA 159 (371)
Q Consensus 83 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~--~~~~~~P~~~ 159 (371)
||++.+..+|++|++|+++++++|.+..... +|.. .+ |+|+||++++. ..++++|+++
T Consensus 80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~-~~------------------G~~aEy~~vp~a~~~l~~iP~~~ 140 (177)
T d1jqba1 80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNF-KD------------------GVFGEYFHVNDADMNLAILPKDV 140 (177)
T ss_dssp EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTT-BC------------------CSSBSSEEESSHHHHCEECCTTS
T ss_pred cEEEeeeeccccccchhhhhhcccccccccccccCC-CC------------------hhcCeeEEEEhhhCeEEECCCCc
Confidence 9999999999999999999999998765421 2222 22 48999999986 3689999999
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHH
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVA 203 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai 203 (371)
++++++.... +++..+ ++.+||+|+|++|+.++
T Consensus 141 ~~~~~~~~~~---~~~~~~--------~~~vlv~g~gp~gl~aa 173 (177)
T d1jqba1 141 DLSKLVTHVY---HGFDHI--------EEALLLMKDKPKDLIKA 173 (177)
T ss_dssp CGGGGEEEEE---ESGGGH--------HHHHHHHHHCCTTCSEE
T ss_pred chHHHHHHHH---HHHHHh--------cCceEEECCCHHHhhee
Confidence 9887764432 233322 23477788888876543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=99.95 E-value=1.4e-27 Score=197.39 Aligned_cols=173 Identities=46% Similarity=0.768 Sum_probs=147.8
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
+.+||++.|++.|+|+++++.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|+++++|+++
T Consensus 2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~ 81 (174)
T d1p0fa2 2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD 81 (174)
T ss_dssp CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence 45699999999999999988999999999999999999999999999999989999999999999999999999999864
Q ss_pred CCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCcC
Q 017460 241 NNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKPK 320 (371)
Q Consensus 241 ~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~ 320 (371)
.+....+..+..+++|+|++||++|....++.++..+.++.|+++.+|.......+++++..+++++++.|+.++++. .
T Consensus 82 ~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~-~ 160 (174)
T d1p0fa2 82 YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFK-G 160 (174)
T ss_dssp CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGGCC-G
T ss_pred chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCCCC-H
Confidence 333345555555555999999999998888889988876338999999876667777776665678999999887764 3
Q ss_pred CCHHHHHHHHHcCC
Q 017460 321 TDLPSLVNRYLKKE 334 (371)
Q Consensus 321 ~~~~~~~~~~~~~~ 334 (371)
++++++++++.+||
T Consensus 161 ~d~~~lidl~~~gK 174 (174)
T d1p0fa2 161 EEVSRLVDDYMKKK 174 (174)
T ss_dssp GGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 48999999998875
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.95 E-value=4.3e-28 Score=200.79 Aligned_cols=173 Identities=32% Similarity=0.519 Sum_probs=152.5
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++++.|+.++|++.|||+++++.+++++|++|||+|+|++|++++|+|+.+|+++|++++.+++|++.++++|+++++|+
T Consensus 1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~ 80 (174)
T d1f8fa2 1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS 80 (174)
T ss_dssp SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence 35778999999999999999899999999999999999999999999999999888889999999999999999999998
Q ss_pred CCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhee-eeccEEEecccCCC
Q 017460 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLF-LSGRTLKGSLFGGW 317 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~ 317 (371)
+ ++++.+.+++++++++|+||||+|+...++.++++++++ |+++.+|........+++...+ .+++++.|+..+.+
T Consensus 81 ~--~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~ 157 (174)
T d1f8fa2 81 K--TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSG 157 (174)
T ss_dssp T--TSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGS
T ss_pred C--CcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCC
Confidence 7 678999999999889999999999988899999999997 9999999765444445554333 56999999988776
Q ss_pred CcCCCHHHHHHHHHcCC
Q 017460 318 KPKTDLPSLVNRYLKKE 334 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~ 334 (371)
..+++++++++++++|+
T Consensus 158 ~~~~~~~~~~~l~~~Gk 174 (174)
T d1f8fa2 158 SPKKFIPELVRLYQQGK 174 (174)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 65567889999999885
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=99.95 E-value=2.4e-27 Score=195.53 Aligned_cols=173 Identities=45% Similarity=0.812 Sum_probs=145.9
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++||++.|++.|+|+++.+.+++++|++|||+|+|++|++++|+++++|+++|++++.+++|++.++++|++++++++
T Consensus 2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~ 81 (174)
T d1e3ia2 2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR 81 (174)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence 46789999999999999988899999999999999999999999999999998999999999999999999999999876
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCc
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 319 (371)
..+.......+...++|+|+||||+|.+..++.++++++++.|+++.+|.... ...++...++.++++.|+..+++..
T Consensus 82 ~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~--~~~i~~~~~~~~k~i~Gs~~Gs~~~ 159 (174)
T d1e3ia2 82 ELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVD--EMTIPTVDVILGRSINGTFFGGWKS 159 (174)
T ss_dssp GCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSS--EEEEEHHHHHTTCEEEECSGGGCCH
T ss_pred cchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCC--ccccchHHHhccCEEEEEEeeCCCh
Confidence 42333444444444449999999999998999999999983399999998654 4455555545688999998888776
Q ss_pred CCCHHHHHHHHHcCC
Q 017460 320 KTDLPSLVNRYLKKE 334 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~ 334 (371)
+++++++++++.+||
T Consensus 160 ~~d~p~li~l~~~GK 174 (174)
T d1e3ia2 160 VDSVPNLVSDYKNKK 174 (174)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCcC
Confidence 678888999888875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.95 E-value=2.6e-27 Score=195.59 Aligned_cols=170 Identities=30% Similarity=0.458 Sum_probs=146.5
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+|+++|++++++++|+|+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|++.++++|+++++++
T Consensus 1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~ 79 (174)
T d1jqba2 1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY 79 (174)
T ss_dssp SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence 57899999999999999997 78999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe---eeeccEEEeccc
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL---FLSGRTLKGSLF 314 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~~~~~~i~g~~~ 314 (371)
+ ++++.+.+++++++ |+|+||||+|+...++.++++++++ |+++.+|.......++++... +++++++.++..
T Consensus 80 ~--~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 156 (174)
T d1jqba2 80 K--NGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLC 156 (174)
T ss_dssp G--GSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCC
T ss_pred c--chhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecC
Confidence 7 67889999999998 9999999999888899999999997 999999987665566554432 245788888766
Q ss_pred CCCCcCCCHHHHHHHHHcCC
Q 017460 315 GGWKPKTDLPSLVNRYLKKE 334 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~ 334 (371)
+.. +...+.+++++..|+
T Consensus 157 ~~~--r~~~e~l~~li~~gk 174 (174)
T d1jqba2 157 PGG--RLRAERLRDMVVYNR 174 (174)
T ss_dssp CCH--HHHHHHHHHHHHTTS
T ss_pred CCC--cccHHHHHHHHHcCC
Confidence 542 234566777777664
|
| >d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.1e-27 Score=198.24 Aligned_cols=156 Identities=21% Similarity=0.376 Sum_probs=124.5
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEGE 82 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~Gd 82 (371)
|||++..++++||++++++.|+|+++||||||.++|||++|++.+.|.++. ++|+|+++|++|+++++||
T Consensus 1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd 80 (179)
T d1uufa1 1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD 80 (179)
T ss_dssp CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence 899999999999999999999999999999999999999999999886543 6999999999999999999
Q ss_pred EEEeee-cCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 83 HVLTVF-IGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 83 ~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
||.+.+ ..+|+.|++|+.+++++|.+......+.. ... .....|+|+||+++++++++++|+....
T Consensus 81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~-~~~------------~~~~~GgfaEy~~v~~~~~~~ip~~~~~ 147 (179)
T d1uufa1 81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPT-PDE------------PGHTLGGYSQQIVVHERYVLRIRVADIE 147 (179)
T ss_dssp EEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBC-SST------------TSBCCCSSBSEEEEEGGGCEECCCCCEE
T ss_pred EEEEcccccccCccccccCcccccCCCccccccccC-CCC------------CcccccccceEEEechHHEEECCCCCcC
Confidence 998766 46899999999999999998664332222 111 0112368999999999999999966432
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADIS 185 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~ 185 (371)
. +.. .++.++++++ .++.++
T Consensus 148 ~--~~a-~~l~~a~~a~-~~a~v~ 167 (179)
T d1uufa1 148 M--IRA-DQINEAYERM-LRGDVK 167 (179)
T ss_dssp E--ECG-GGHHHHHHHH-HTTCSS
T ss_pred h--hHh-chhHHHHHHH-HHhCcc
Confidence 2 222 2566788776 334443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.94 E-value=1.6e-26 Score=191.93 Aligned_cols=174 Identities=48% Similarity=0.851 Sum_probs=145.7
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
|+++||+++|++.|+|+++.+.+++++|++|||+|+|++|++++|+++++|+++|++++++++|++.++++|+++++++.
T Consensus 2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~ 81 (176)
T d2fzwa2 2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ 81 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence 57889999999999999998889999999999999999999999999999988999999999999999999999999886
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCC-CCeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKL-KPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+..++..+.+++.+++|+|+|||++|....++.++.+++++ |+++.++.... ..........+.+++++.|+.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 160 (176)
T d2fzwa2 82 DFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK 160 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred chhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCc
Confidence 54455666666666669999999999988888999999986 88877654433 23333334444678999999888776
Q ss_pred cCCCHHHHHHHHHcCC
Q 017460 319 PKTDLPSLVNRYLKKE 334 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~ 334 (371)
.++++.++++++.+||
T Consensus 161 ~~~d~~~li~l~~~GK 176 (176)
T d2fzwa2 161 SVESVPKLVSEYMSKK 176 (176)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6678888999998876
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.94 E-value=1e-26 Score=192.35 Aligned_cols=172 Identities=44% Similarity=0.754 Sum_probs=148.3
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
++++||.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++++|+.+|++++.+++|++.++++|+++++|++
T Consensus 3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~ 82 (176)
T d1d1ta2 3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK 82 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence 58899999999999999988889999999999999999999999999999987999999999999999999999999987
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+ .+...+.+.+.+++ |+|++||++|....+..++..+.++.|+++.+|.......+.+++..+++++++.|+.+++..
T Consensus 83 ~-~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 161 (176)
T d1d1ta2 83 D-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLK 161 (176)
T ss_dssp G-CSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred c-cchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHhCCCEEEEEEEeCCC
Confidence 3 33445667777776 999999999998888888887766449999999887766677776666678999999988877
Q ss_pred cCCCHHHHHHHHHc
Q 017460 319 PKTDLPSLVNRYLK 332 (371)
Q Consensus 319 ~~~~~~~~~~~~~~ 332 (371)
.++++.++++++.+
T Consensus 162 ~~~dip~li~~~~~ 175 (176)
T d1d1ta2 162 SRDDVPKLVTEFLA 175 (176)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhC
Confidence 67788888877543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-26 Score=192.25 Aligned_cols=166 Identities=18% Similarity=0.223 Sum_probs=141.8
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
+|+++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|++++++++|++.++++|+++++|
T Consensus 1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~ 79 (174)
T d1yb5a2 1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN 79 (174)
T ss_dssp SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence 5889999999999999999988899999999999986 9999999999999999 9999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccC
Q 017460 238 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFG 315 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 315 (371)
++ +.++.+.+++.+++ ++|+|||++|+ ..++.++++++++ |+++.+|.... .++++.. +.+++++.|+.+.
T Consensus 80 ~~--~~~~~~~i~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~---~~~~~~~~~~k~~~i~g~~~~ 152 (174)
T d1yb5a2 80 HR--EVNYIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHG-GRVIVVGSRGT---IEINPRDTMAKESSIIGVTLF 152 (174)
T ss_dssp TT--STTHHHHHHHHHCTTCEEEEEESCHH-HHHHHHHHHEEEE-EEEEECCCCSC---EEECTHHHHTTTCEEEECCGG
T ss_pred cc--cccHHHHhhhhhccCCceEEeecccH-HHHHHHHhccCCC-CEEEEEecCCC---CCCCHHHHHHCCCEEEEEEec
Confidence 98 77899999999998 99999999996 5899999999997 99999986532 3333332 3569999998765
Q ss_pred CCCcCCCHHHHHHHHHcC
Q 017460 316 GWKPKTDLPSLVNRYLKK 333 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~ 333 (371)
... .+++++++++++++
T Consensus 153 ~~~-~~~~~~~~~~l~~g 169 (174)
T d1yb5a2 153 SST-KEEFQQYAAALQAG 169 (174)
T ss_dssp GCC-HHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHH
Confidence 432 34567777766554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=99.94 E-value=8.9e-26 Score=187.24 Aligned_cols=174 Identities=48% Similarity=0.846 Sum_probs=143.1
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
|+++||+++|++.|+|+++.+.+++++|++|||+|+|++|++++++++..|+.+|++++++++|++.++++|+++++++.
T Consensus 2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~ 81 (176)
T d2jhfa2 2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 81 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence 57899999999999999998999999999999999999999999999999988999999999999999999999999875
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEe-cCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTL-GVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~-g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+.++.....++...++|+|++||++|....++.++..++++ |..+.+ +..............+++++++.|+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 160 (176)
T d2jhfa2 82 DYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEA-YGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFK 160 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred CchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcC-CcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCC
Confidence 42333444444444449999999999988889999999986 555444 4444434444444555689999999988776
Q ss_pred cCCCHHHHHHHHHcCC
Q 017460 319 PKTDLPSLVNRYLKKE 334 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~ 334 (371)
++++++++++++.+||
T Consensus 161 ~~~~~~~li~~~~~GK 176 (176)
T d2jhfa2 161 SKDSVPKLVADFMAKK 176 (176)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCcC
Confidence 6778899999988875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=9.9e-27 Score=194.41 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=146.0
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
+|||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|++.|+ +|+++++++++++.++++|++++++++
T Consensus 1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~- 78 (183)
T d1pqwa_ 1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSR- 78 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETT-
T ss_pred CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCC-
Confidence 4799999999999999989999999999999985 9999999999999999 999999999999999999999999987
Q ss_pred CCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCCc
Q 017460 241 NNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWKP 319 (371)
Q Consensus 241 ~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 319 (371)
++++.+.+++.+++ |+|+|||++|+ ..++.++++++++ |+++.+|..............+.++.++.++.+.....
T Consensus 79 -~~~~~~~v~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
T d1pqwa_ 79 -SVDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPG-GRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLK 155 (183)
T ss_dssp -CSTHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHH
T ss_pred -ccCHHHHHHHHhCCCCEEEEEecccc-hHHHHHHHHhcCC-CEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceec
Confidence 77899999999998 99999999998 5899999999997 99999986654333333334445688887765432110
Q ss_pred ------CCCHHHHHHHHHcCCCCCCcc
Q 017460 320 ------KTDLPSLVNRYLKKEFMVDEF 340 (371)
Q Consensus 320 ------~~~~~~~~~~~~~~~~~~~~~ 340 (371)
++.++++++++.+|++++.|+
T Consensus 156 ~~~~~~~~~~~~v~~~i~~G~i~p~Pi 182 (183)
T d1pqwa_ 156 LQPARYRQLLQHILQHVADGKLEVLPV 182 (183)
T ss_dssp HCHHHHHHHHHHHHHHHHTTSSCCCCC
T ss_pred cCHHHHHHHHHHHHHHHHCCCCceeCC
Confidence 245777888999999887654
|
| >d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.5e-26 Score=183.90 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=120.9
Q ss_pred eeeEEEEecCCCC--eEEE-EeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCC
Q 017460 12 TCKAAVAWGAGQP--LVVE-EVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTE 77 (371)
Q Consensus 12 ~~~a~~~~~~~~~--l~~~-~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~ 77 (371)
-|||++++++|.+ +++. ++|.|+|++|||+|||.+++||++|++.+.|.++. ++|+|+++|+++++
T Consensus 2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~ 81 (150)
T d1yb5a1 2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA 81 (150)
T ss_dssp EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence 5899999998876 7775 68999999999999999999999999999886543 69999999999999
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
|++||||++.+. . +|+|+||+.++++.++++|+
T Consensus 82 ~~vGdrV~~~~~-----------------------------~------------------~G~~ae~~~v~~~~~~~iP~ 114 (150)
T d1yb5a1 82 FKKGDRVFTSST-----------------------------I------------------SGGYAEYALAADHTVYKLPE 114 (150)
T ss_dssp CCTTCEEEESCC-----------------------------S------------------SCSSBSEEEEEGGGEEECCT
T ss_pred cccCcccccccc-----------------------------c------------------cccccccccccccccccccC
Confidence 999999987621 1 24899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF 193 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~ 193 (371)
++++++||++++...|+++++...++...|+++||+
T Consensus 115 ~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL 150 (150)
T d1yb5a1 115 KLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL 150 (150)
T ss_dssp TCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred CCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence 999999999999999999998888889999999984
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.3e-25 Score=183.80 Aligned_cols=168 Identities=23% Similarity=0.336 Sum_probs=140.5
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+|+++||++. ++++||+++ +++++++|++|+|+|+|++|++++|+|+++|+++|++++++++|+++++++|+++++++
T Consensus 1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~ 78 (171)
T d1pl8a2 1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 78 (171)
T ss_dssp SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence 4788999885 899999997 78899999999999999999999999999999889999999999999999999999887
Q ss_pred CCCCchHHHHHHH--HhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccC
Q 017460 239 NDNNEPVQQVIKR--ITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFG 315 (371)
Q Consensus 239 ~~~~~~~~~~v~~--~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 315 (371)
. ..+..+..+. .+.+ ++|+||||+|++..++.++++++++ |+++.+|......++++... +++++++.|++..
T Consensus 79 ~--~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~~~~~~~~~~~-~~k~l~i~Gs~~~ 154 (171)
T d1pl8a2 79 S--KESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSEMTTVPLLHA-AIREVDIKGVFRY 154 (171)
T ss_dssp S--SCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCSCCCCCHHHH-HHTTCEEEECCSC
T ss_pred c--ccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCCCCCccCHHHH-HHCCcEEEEEeCC
Confidence 6 3344333333 3344 9999999999988899999999997 99999998766445554433 3579999998632
Q ss_pred CCCcCCCHHHHHHHHHcCCCC
Q 017460 316 GWKPKTDLPSLVNRYLKKEFM 336 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ 336 (371)
.++++++++++.+|+++
T Consensus 155 ----~~~~~~al~li~~gkid 171 (171)
T d1pl8a2 155 ----CNTWPVAISMLASKSVN 171 (171)
T ss_dssp ----SSCHHHHHHHHHTTSCC
T ss_pred ----HhHHHHHHHHHHcCCCC
Confidence 35899999999999864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.93 E-value=5.3e-26 Score=187.54 Aligned_cols=168 Identities=24% Similarity=0.270 Sum_probs=148.6
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
+++.+||+++|++.|||+++ +..+++++++|||+|+ |++|++++|++++.|+.+|++++++++|++.++++|++++++
T Consensus 1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~ 79 (170)
T d1jvba2 1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN 79 (170)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence 57899999999999999998 7789999999999995 999999999999999779999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCC
Q 017460 238 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGG 316 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 316 (371)
++ +.++.+.+++.+.+ ++|++|||+|+...++.++++++++ |+++.+|......+++.... +++++++.|++.+.
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~-~~k~i~i~Gs~~~~ 155 (170)
T d1jvba2 80 AS--MQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADLHYHAPLI-TLSEIQFVGSLVGN 155 (170)
T ss_dssp TT--TSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCCCCCCHHHH-HHHTCEEEECCSCC
T ss_pred cC--CcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEeccccCccccCHHHH-HhCCcEEEEEecCC
Confidence 87 67888999999888 8999999999988899999999997 99999998766555554433 36799999998764
Q ss_pred CCcCCCHHHHHHHHHcCC
Q 017460 317 WKPKTDLPSLVNRYLKKE 334 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~ 334 (371)
+++++++++++++||
T Consensus 156 ---~~d~~~~l~lv~~GK 170 (170)
T d1jvba2 156 ---QSDFLGIMRLAEAGK 170 (170)
T ss_dssp ---HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHHHcCC
Confidence 457999999999886
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.6e-25 Score=186.76 Aligned_cols=169 Identities=25% Similarity=0.340 Sum_probs=142.3
Q ss_pred hhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND 240 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~ 240 (371)
+..+|.+.|+.+|||+++.+.+++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|+++++|+++
T Consensus 3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~ 82 (182)
T d1vj0a2 3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE 82 (182)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence 45678888999999999988889999999999999999999999999999978999999999999999999999998873
Q ss_pred CC-chHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh--eeeeccEEEecccCC
Q 017460 241 NN-EPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG--LFLSGRTLKGSLFGG 316 (371)
Q Consensus 241 ~~-~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~--~~~~~~~i~g~~~~~ 316 (371)
.+ .+..+.+.+++++ |+|+||||+|++..++.++++++++ |+++.+|......++++... .+.+++++.|++.++
T Consensus 83 ~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~ 161 (182)
T d1vj0a2 83 TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD 161 (182)
T ss_dssp SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence 22 2345667888888 9999999999887899999999997 99999997665555665543 345799999987654
Q ss_pred CCcCCCHHHHHHHHHcC
Q 017460 317 WKPKTDLPSLVNRYLKK 333 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~ 333 (371)
..+++++++++.++
T Consensus 162 ---~~~~~~~~~~i~~~ 175 (182)
T d1vj0a2 162 ---TSHFVKTVSITSRN 175 (182)
T ss_dssp ---HHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHC
Confidence 34688888887765
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=99.93 E-value=2.4e-25 Score=184.50 Aligned_cols=172 Identities=45% Similarity=0.814 Sum_probs=142.3
Q ss_pred ChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 160 PLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
|+++||+++|++.|+|+++.+.+++++|++|+|+|+|++|++++++++..|+.+|++++++++|++.++++|+++++|++
T Consensus 2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~ 81 (175)
T d1cdoa2 2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN 81 (175)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence 57899999999999999998889999999999999999999999999999988999999999999999999999999986
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEE-EecCCCCCCeeecchheeeeccEEEecccCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAV-TLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGW 317 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v-~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 317 (371)
+ ..+..+++.+.+.+ |+|++||++|....+..++.+++++ |.++ ..+........ .....+.+++++.|+..+++
T Consensus 82 ~-~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g-~~~~~~~g~~~~~~~~-~~~~~~~~~~~i~Gs~~G~~ 158 (175)
T d1cdoa2 82 D-HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKG-WGVSVLVGWTDLHDVA-TRPIQLIAGRTWKGSMFGGF 158 (175)
T ss_dssp G-CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCSSSCEE-ECHHHHHTTCEEEECSGGGC
T ss_pred C-cchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCC-CcceeEEEecCCcccC-ccHHHHHCCcEEEEEEEeCC
Confidence 4 33445666666655 9999999999988888889988886 5554 45544432333 33333457899999988877
Q ss_pred CcCCCHHHHHHHHHcCC
Q 017460 318 KPKTDLPSLVNRYLKKE 334 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~ 334 (371)
..+++++++++++.+||
T Consensus 159 ~~~~d~~~~i~l~~~gK 175 (175)
T d1cdoa2 159 KGKDGVPKMVKAYLDKK 175 (175)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 66678999999998875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=4.2e-25 Score=181.37 Aligned_cols=165 Identities=21% Similarity=0.270 Sum_probs=140.0
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+++++||.++|+++|||+++ +++++++|++|+|+|+|++|++++|+|+++|+ +|++++++++|++.++++|+++++|+
T Consensus 1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~ 78 (166)
T d1llua2 1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA 78 (166)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence 57899999999999999998 67899999999999999999999999999998 99999999999999999999999998
Q ss_pred CCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+ ++++.+.+.+.+. +.+.+++++++...++.++++++++ |+++.+|.......++.... +++++++.|++.+.
T Consensus 79 ~--~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~-~~k~~~i~Gs~~~~-- 151 (166)
T d1llua2 79 R--QEDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPPGDFPTPIFDV-VLKGLHIAGSIVGT-- 151 (166)
T ss_dssp T--TSCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCSSEEEEEHHHH-HHTTCEEEECCSCC--
T ss_pred c--chhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCC-cEEEEEEecCCCccCCHHHH-HhCCcEEEEEeecC--
Confidence 7 6678888877665 5666677777778899999999997 99999997655333333222 35799999987665
Q ss_pred cCCCHHHHHHHHHcC
Q 017460 319 PKTDLPSLVNRYLKK 333 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~ 333 (371)
+++++++++++.+|
T Consensus 152 -~~d~~e~l~l~~~G 165 (166)
T d1llua2 152 -RADLQEALDFAGEG 165 (166)
T ss_dssp -HHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHCc
Confidence 45789999998876
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=99.92 E-value=1.7e-24 Score=178.42 Aligned_cols=167 Identities=24% Similarity=0.305 Sum_probs=135.9
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+|+++||++. ++++||+++ +++++++|++|||+|+|++|++++|+|+++|+ +|++++++++|++.++++|++.++..
T Consensus 1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~ 77 (170)
T d1e3ja2 1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV 77 (170)
T ss_dssp SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence 4788999885 889999997 78899999999999999999999999999999 99999999999999999999876644
Q ss_pred CCCCchH---HHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccC
Q 017460 239 NDNNEPV---QQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFG 315 (371)
Q Consensus 239 ~~~~~~~---~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 315 (371)
+....+. .+.+++..++++|+||||+|++..++.++++++++ |+++.+|.......+++... +.+++++.|++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~-~~k~i~i~gs~~~ 155 (170)
T d1e3ja2 78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQMVTVPLVNA-CAREIDIKSVFRY 155 (170)
T ss_dssp CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSSCCCCCHHHH-HTTTCEEEECCSC
T ss_pred cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCCCCCCcCHHHH-HHCCCEEEEEECC
Confidence 3223333 34444444459999999999988899999999997 99999998765434443322 3569999988532
Q ss_pred CCCcCCCHHHHHHHHHcCC
Q 017460 316 GWKPKTDLPSLVNRYLKKE 334 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~ 334 (371)
..+++++++++.+|+
T Consensus 156 ----~~~~~~ai~li~~Gk 170 (170)
T d1e3ja2 156 ----CNDYPIALEMVASGR 170 (170)
T ss_dssp ----SSCHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHHHcCC
Confidence 358999999999885
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.92 E-value=7e-25 Score=181.01 Aligned_cols=165 Identities=20% Similarity=0.255 Sum_probs=139.7
Q ss_pred hhhhhhcchhhhhHHhHhhhhc-CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCC
Q 017460 161 LEKICLLSCGLSAGLGAAWNVA-DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPN 239 (371)
Q Consensus 161 ~~~aa~~~~~~~~a~~~l~~~~-~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~ 239 (371)
+.++|+++++++|||+++.+.. .+++|++|||+|+|++|++++|+++++|+.+|++++++++|++.++++|+++++++.
T Consensus 6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~ 85 (172)
T d1h2ba2 6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR 85 (172)
T ss_dssp HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence 5688999999999999996544 479999999999999999999999999988999999999999999999999999985
Q ss_pred CCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 240 DNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
++..+.+.+.+++ ++|+|||++|+...++.++++++++ |+++.+|.... .+++.... +++++++.|++.+.
T Consensus 86 ---~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~~-~~~~~~~l-~~k~~~i~Gs~~~~-- 157 (172)
T d1h2ba2 86 ---RDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGGE-LRFPTIRV-ISSEVSFEGSLVGN-- 157 (172)
T ss_dssp ---SCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCSSC-CCCCHHHH-HHTTCEEEECCSCC--
T ss_pred ---ccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCccc-ccCCHHHH-HhCCcEEEEEEecC--
Confidence 3455666778877 9999999999987899999999997 99999996432 33333222 35699999998765
Q ss_pred cCCCHHHHHHHHHcCC
Q 017460 319 PKTDLPSLVNRYLKKE 334 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~ 334 (371)
+.+++++++++.+||
T Consensus 158 -~~d~~~~l~l~~~GK 172 (172)
T d1h2ba2 158 -YVELHELVTLALQGK 172 (172)
T ss_dssp -HHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHHHcCC
Confidence 357899999999885
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.92 E-value=2.2e-25 Score=183.25 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=128.2
Q ss_pred CChhhhhhcchhhhhHHhHh---hhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 159 APLEKICLLSCGLSAGLGAA---WNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l---~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
+|++|||++++++.|||+++ .+..+.++|++|||+|+ |++|.+++|+|+.+|+ +|++++++++|.+.++++|+++
T Consensus 1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~ 79 (176)
T d1xa0a2 1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE 79 (176)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence 58899999999999999765 34677889999999985 9999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-CeeecchheeeeccEEEec
Q 017460 235 FLNPNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAHYGLFLSGRTLKGS 312 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~i~g~ 312 (371)
++|++ ..+.+.+ +.+++ ++|+|||++|+. .+..++++|+++ |+++.+|...+. .++++... +++++++.|.
T Consensus 80 vi~~~---~~~~~~~-~~~~~~gvD~vid~vgg~-~~~~~l~~l~~~-Griv~~G~~~g~~~~~~~~~~-~~k~~~i~Gv 152 (176)
T d1xa0a2 80 VLARE---DVMAERI-RPLDKQRWAAAVDPVGGR-TLATVLSRMRYG-GAVAVSGLTGGAEVPTTVHPF-ILRGVSLLGI 152 (176)
T ss_dssp EEECC-------------CCSCCEEEEEECSTTT-THHHHHHTEEEE-EEEEECSCCSSSCCCCCSHHH-HHTTCEEEEC
T ss_pred eeecc---hhHHHHH-HHhhccCcCEEEEcCCch-hHHHHHHHhCCC-ceEEEeecccCcccCCCHHHH-HHCCcEEEEE
Confidence 99985 3344444 44555 999999999985 799999999997 999999987553 23333332 3679999997
Q ss_pred ccCCCCcCCCHHHHHHHHHcCCCCC
Q 017460 313 LFGGWKPKTDLPSLVNRYLKKEFMV 337 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (371)
.....+ .+...++++.+ .++++|
T Consensus 153 ~~~~~~-~~~~~~~~~~l-ag~lkP 175 (176)
T d1xa0a2 153 DSVYCP-MDLRLRIWERL-AGDLKP 175 (176)
T ss_dssp CSSSCC-HHHHHHHHHHH-HTTTCC
T ss_pred eCCcCC-HHHHHHHHHHH-hcccCC
Confidence 543322 23344455444 355554
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.92 E-value=2.3e-24 Score=177.36 Aligned_cols=168 Identities=25% Similarity=0.334 Sum_probs=143.2
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+|+++||++++++.|||+++ +..++++|++|||+|+|++|+++++++++.|+ +|++++++++|++.++++|++.++++
T Consensus 1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~ 78 (168)
T d1rjwa2 1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP 78 (168)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence 58899999999999999998 67899999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCCCC
Q 017460 239 NDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGGWK 318 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 318 (371)
+ +.++...+++.+.+..|+ +++.++...++.++++++++ |+++.+|.......++.... +++++++.|+..+.
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~~~~~~~~~~~~-~~~~~~i~gs~~~~-- 151 (168)
T d1rjwa2 79 L--KEDAAKFMKEKVGGVHAA-VVTAVSKPAFQSAYNSIRRG-GACVLVGLPPEEMPIPIFDT-VLNGIKIIGSIVGT-- 151 (168)
T ss_dssp T--TSCHHHHHHHHHSSEEEE-EESSCCHHHHHHHHHHEEEE-EEEEECCCCSSEEEEEHHHH-HHTTCEEEECCSCC--
T ss_pred c--cchhhhhcccccCCCceE-EeecCCHHHHHHHHHHhccC-CceEecccccCCCCCCHHHH-HHCCcEEEEEeeCC--
Confidence 8 678888899888754444 45666677899999999997 99999998765444443322 35699999987654
Q ss_pred cCCCHHHHHHHHHcCCCC
Q 017460 319 PKTDLPSLVNRYLKKEFM 336 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~ 336 (371)
+++++++++++.+|+++
T Consensus 152 -~~~~~~~l~l~~~Gkik 168 (168)
T d1rjwa2 152 -RKDLQEALQFAAEGKVK 168 (168)
T ss_dssp -HHHHHHHHHHHHTTSCC
T ss_pred -HHHHHHHHHHHHhCCCC
Confidence 45799999999999864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4.2e-25 Score=181.57 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=138.2
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
+|++.||.+.|+..|+|+++ +.+++++|++|||+|+|++|++++|+|+++|+ +|++++++++|++.++++|+++++++
T Consensus 1 lp~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~ 78 (168)
T d1piwa2 1 IPSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIAT 78 (168)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEG
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeec
Confidence 35678999999999999998 67899999999999999999999999999999 99999999999999999999999987
Q ss_pred CCCCchHHHHHHHHhCCCccEEEEcCCChH--HHHHHHHHhccCCceEEEecCCCCCCeeecchheeeeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDGGADYSFECIGDTG--MITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGLFLSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~gg~dvVid~~g~~~--~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 316 (371)
.+ +.++.+ ...+++|+++|++++.. .+..++++++++ |+++.+|.......+++.... ++++++.|+..++
T Consensus 79 ~~-~~~~~~----~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~-~k~~~i~Gs~~g~ 151 (168)
T d1piwa2 79 LE-EGDWGE----KYFDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQHEMLSLKPYG-LKAVSISYSALGS 151 (168)
T ss_dssp GG-TSCHHH----HSCSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCSSCCEEECGGG-CBSCEEEECCCCC
T ss_pred cc-hHHHHH----hhhcccceEEEEecCCccchHHHHHHHhhcc-ceEEEeccccccccccHHHHH-hCCcEEEEEeeCC
Confidence 53 223322 22348999999988643 367889999997 999999987665566655543 6799999988765
Q ss_pred CCcCCCHHHHHHHHHcCCCC
Q 017460 317 WKPKTDLPSLVNRYLKKEFM 336 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~ 336 (371)
+++++++++++.+|+++
T Consensus 152 ---~~~~~e~l~li~~gkIk 168 (168)
T d1piwa2 152 ---IKELNQLLKLVSEKDIK 168 (168)
T ss_dssp ---HHHHHHHHHHHHHTTCC
T ss_pred ---HHHHHHHHHHHHhCCCC
Confidence 45799999999999864
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=6.4e-25 Score=182.58 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=120.4
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
+|+++||+++++++|||++|.+.+++++|++|||+|+ |++|++++|+|+..|+ +|++++++++|++.++++|+++++|
T Consensus 1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~ 79 (179)
T d1qora2 1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN 79 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence 5889999999999999999988889999999999975 7899999999999999 9999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCC
Q 017460 238 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
++ ++++.++++++|++ ++|+|+|+++++ .+..++.+++++ |+++.++....
T Consensus 80 ~~--~~d~~~~v~~~t~g~g~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~ 131 (179)
T d1qora2 80 YR--EEDLVERLKEITGGKKVRVVYDSVGRD-TWERSLDCLQRR-GLMVSFGNSSG 131 (179)
T ss_dssp TT--TSCHHHHHHHHTTTCCEEEEEECSCGG-GHHHHHHTEEEE-EEEEECCCTTC
T ss_pred CC--CCCHHHHHHHHhCCCCeEEEEeCccHH-HHHHHHHHHhcC-CeeeecccccC
Confidence 98 67899999999998 999999999874 799999999997 99999987655
|
| >d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3e-24 Score=172.12 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=112.1
Q ss_pred eEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC----------eEEEEEeeCCCCCCCCCC
Q 017460 14 KAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ----------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 14 ~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~----------~~G~V~~~G~~v~~~~~G 81 (371)
+++.++++|.| |++++.+.|+|++|||+|||.|++||++|+++++|.++. ++|+|+++|+++++|++|
T Consensus 2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG 81 (147)
T d1qora1 2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG 81 (147)
T ss_dssp EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence 56788999987 999999999999999999999999999999999987643 699999999999999999
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
|||+... .+ .|+|+||++++++.++++|+++++
T Consensus 82 drV~~~~-------------------------------~~----------------~G~~ae~~~v~~~~~~~~P~~~~~ 114 (147)
T d1qora1 82 DRVVYAQ-------------------------------SA----------------LGAYSSVHNIIADKAAILPAAIKV 114 (147)
T ss_dssp CEEEESC-------------------------------CS----------------SCCSBSEEEEEGGGEEECCTTSCC
T ss_pred ceeeeec-------------------------------cc----------------cccceeEEEEehHHeEEcCcccch
Confidence 9997541 11 258999999999999999999887
Q ss_pred hhh--hhcchhhhhHHhHhhhhcCCCCCCEEEE
Q 017460 162 EKI--CLLSCGLSAGLGAAWNVADISKGSTVVI 192 (371)
Q Consensus 162 ~~a--a~~~~~~~~a~~~l~~~~~~~~~~~VlI 192 (371)
+++ +++++...++++++.+ .++++|++|||
T Consensus 115 ~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI 146 (147)
T d1qora1 115 DVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI 146 (147)
T ss_dssp CCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence 644 4556666777787744 67999999998
|
| >d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.91 E-value=1.7e-24 Score=174.56 Aligned_cols=139 Identities=18% Similarity=0.135 Sum_probs=115.8
Q ss_pred ceeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCC
Q 017460 10 VITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVT 76 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~ 76 (371)
|.+|||+++++++++ +++++++.|+|++|||||||.|+|||++|++.+.|.++. ++|+|++ ..++
T Consensus 1 m~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~ 78 (152)
T d1xa0a1 1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHP 78 (152)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSS
T ss_pred CCceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCC
Confidence 568999999999886 557899999999999999999999999999998886542 6999998 5567
Q ss_pred CCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECC
Q 017460 77 EFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVS 156 (371)
Q Consensus 77 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P 156 (371)
.|++||+|+...+.. +.. . .|+||||+.++++.++++|
T Consensus 79 ~~~~g~~v~~~~~~~-----------------------~~~-~------------------~G~~aEy~~v~~~~~~~iP 116 (152)
T d1xa0a1 79 RFREGDEVIATGYEI-----------------------GVT-H------------------FGGYSEYARLHGEWLVPLP 116 (152)
T ss_dssp SCCTTCEEEEESTTB-----------------------TTT-B------------------CCSSBSEEEECGGGCEECC
T ss_pred ccccCCEEEEecCcc-----------------------ccc-c------------------CCCcceeeeehhhccccCC
Confidence 899999998762110 000 1 2589999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEc
Q 017460 157 SIAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFG 194 (371)
Q Consensus 157 ~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~G 194 (371)
++++ .+||+++++..|++.++....+++ |++|||+|
T Consensus 117 ~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~ 152 (152)
T d1xa0a1 117 KGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA 152 (152)
T ss_dssp TTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence 9997 578888889889988887777876 99999975
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2e-24 Score=177.47 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=132.3
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
.+++.+|.+.|+..|+|+++ +.+++++|++|||+|+|++|++++|+|+++|+ ++++++++++|++.++++|+++++++
T Consensus 4 ~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~ 81 (168)
T d1uufa2 4 EQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNS 81 (168)
T ss_dssp GGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred ccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEEC
Confidence 45678888899999999998 78999999999999999999999999999999 88889999999999999999999998
Q ss_pred CCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchh-eeeeccEEEecccCC
Q 017460 239 NDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYG-LFLSGRTLKGSLFGG 316 (371)
Q Consensus 239 ~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~ 316 (371)
. +.+. ..... ++|++||++|.+..++.++++++++ |+++.+|...... ..+... .+.+++++.|+..++
T Consensus 82 ~--~~~~-----~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~-~~~~~~~l~~k~~~i~Gs~~~~ 152 (168)
T d1uufa2 82 R--NADE-----MAAHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPH-KSPEVFNLIMKRRAIAGSMIGG 152 (168)
T ss_dssp T--CHHH-----HHTTTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCSCC
T ss_pred c--hhhH-----HHHhcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccCCCCc-ccccHHHHHHCCcEEEEEeecC
Confidence 6 3322 12233 8999999999877899999999997 9999999765422 222322 235799999998765
Q ss_pred CCcCCCHHHHHHHHHcCCC
Q 017460 317 WKPKTDLPSLVNRYLKKEF 335 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~ 335 (371)
..+++++++++.+++|
T Consensus 153 ---~~d~~e~l~l~a~~~I 168 (168)
T d1uufa2 153 ---IPETQEMLDFCAEHGI 168 (168)
T ss_dssp ---HHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHcCC
Confidence 4578899999888764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=99.90 E-value=5.7e-24 Score=177.14 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=132.2
Q ss_pred hhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 165 CLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 165 a~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
+++.++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +||++++++++.+.++++|++++++++ ++
T Consensus 8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~--~~ 84 (182)
T d1v3va2 8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYK--TV 84 (182)
T ss_dssp TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETT--SC
T ss_pred HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhcccc--cc
Confidence 4667889999999989999999999999986 8999999999999999 999999999999999999999999987 66
Q ss_pred hHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-----Ceeecchh-eeeeccEEEecccCC
Q 017460 244 PVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-----PEVAAHYG-LFLSGRTLKGSLFGG 316 (371)
Q Consensus 244 ~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~-~~~~~~~i~g~~~~~ 316 (371)
++.+.+.+.+++ |+|+|||++|+ +.++.++++++++ |+++.+|..... .+..+... .+.+++++.|+++..
T Consensus 85 ~~~~~~~~~~~~~Gvd~v~D~vG~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~ 162 (182)
T d1v3va2 85 NSLEEALKKASPDGYDCYFDNVGG-EFLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYR 162 (182)
T ss_dssp SCHHHHHHHHCTTCEEEEEESSCH-HHHHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGG
T ss_pred cHHHHHHHHhhcCCCceeEEecCc-hhhhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEec
Confidence 777788877777 99999999996 5899999999997 999999864321 11122222 235689999987766
Q ss_pred CCcC---CCHHHHHHHHHcC
Q 017460 317 WKPK---TDLPSLVNRYLKK 333 (371)
Q Consensus 317 ~~~~---~~~~~~~~~~~~~ 333 (371)
+... +.++++++++.+|
T Consensus 163 ~~~~~~~~~~~~l~~~i~~G 182 (182)
T d1v3va2 163 WQGDVREKALRDLMKWVLEG 182 (182)
T ss_dssp CCHHHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHHHHHhCc
Confidence 5421 2345555665543
|
| >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=6.5e-24 Score=165.83 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=107.4
Q ss_pred eeEEEEecCCCCeEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCCCC
Q 017460 13 CKAAVAWGAGQPLVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFNEG 81 (371)
Q Consensus 13 ~~a~~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~~G 81 (371)
|||++++++|+++++++++.|+|+++||+||+.|++||++|++++.|.++. ++|+| +|
T Consensus 1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG 69 (131)
T d1iz0a1 1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG 69 (131)
T ss_dssp CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence 899999999999999999999999999999999999999999999887543 58988 39
Q ss_pred CEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCCCh
Q 017460 82 EHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPL 161 (371)
Q Consensus 82 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~~~ 161 (371)
|+|+... .+ |+|+||+.++++.++++|+++++
T Consensus 70 d~V~~~~------------------------------~~------------------G~~aey~~v~~~~~~~~P~~~~~ 101 (131)
T d1iz0a1 70 RRYAALV------------------------------PQ------------------GGLAERVAVPKGALLPLPEGRPV 101 (131)
T ss_dssp EEEEEEC------------------------------SS------------------CCSBSEEEEEGGGCEECCTTCCC
T ss_pred ceEEEEe------------------------------cc------------------CccceeeeeCHHHeEEccCCCCH
Confidence 9998773 22 48999999999999999999999
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIF 193 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~ 193 (371)
++||++++.+.|||+++.+.+ ..|++||++
T Consensus 102 ~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l 131 (131)
T d1iz0a1 102 VGPVFPFAEAEAAFRALLDRG--HTGKVVVRL 131 (131)
T ss_dssp EEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence 999999999999999997665 458999873
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=6.2e-24 Score=174.84 Aligned_cols=146 Identities=21% Similarity=0.225 Sum_probs=118.4
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLN 237 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~ 237 (371)
+++++||++++++.|||+++ +.+++++|++|||+|+ |++|++++|+|++.|+ +|++++++++|++.++++|+++++|
T Consensus 1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~ 78 (171)
T d1iz0a2 1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT 78 (171)
T ss_dssp CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence 57899999999999999998 5689999999999985 9999999999999999 9999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccC
Q 017460 238 PNDNNEPVQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFG 315 (371)
Q Consensus 238 ~~~~~~~~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 315 (371)
+. + ...+.+++ |+|+|||++|. .++.++++++++ |+++.+|...+. ..+++... +.+++++.|+++.
T Consensus 79 ~~----~---~~~~~~~~~g~D~v~d~~G~--~~~~~~~~l~~~-G~~v~~G~~~g~-~~~~~~~~~~~k~~~i~g~~~~ 147 (171)
T d1iz0a2 79 YA----E---VPERAKAWGGLDLVLEVRGK--EVEESLGLLAHG-GRLVYIGAAEGE-VAPIPPLRLMRRNLAVLGFWLT 147 (171)
T ss_dssp GG----G---HHHHHHHTTSEEEEEECSCT--THHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCHH
T ss_pred hh----h---hhhhhhccccccccccccch--hHHHHHHHHhcC-CcEEEEeCCCCC-CCCccHHHHHHCCcEEEEEeCc
Confidence 74 2 23445556 99999999884 589999999997 999999976542 22333322 3579999998765
Q ss_pred CC
Q 017460 316 GW 317 (371)
Q Consensus 316 ~~ 317 (371)
.+
T Consensus 148 ~~ 149 (171)
T d1iz0a2 148 PL 149 (171)
T ss_dssp HH
T ss_pred Ch
Confidence 54
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.88 E-value=5.4e-23 Score=172.08 Aligned_cols=172 Identities=18% Similarity=0.213 Sum_probs=130.9
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEE-c-cChHHHHHHHHHHHcCCCEEEEEcCChh----hHHHHHHcCC
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKGSTVVIF-G-LGTVGLSVAQGAKARGASRIIGVDTNPE----KCEKAKAFGV 232 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~-G-ag~~G~~ai~la~~~G~~~vi~~~~~~~----~~~~~~~lg~ 232 (371)
+|+++||+++++++|||+++.+.+++++|++|+|+ | +|++|++++|+||++|+ +||+++++++ +.+.++++|+
T Consensus 1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa 79 (189)
T d1gu7a2 1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA 79 (189)
T ss_dssp CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence 58899999999999999999888999999999997 5 48999999999999999 8888876543 4556789999
Q ss_pred ceEeCCCC-CCchHHHHHHHHh---CCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeecc
Q 017460 233 TEFLNPND-NNEPVQQVIKRIT---DGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGR 307 (371)
Q Consensus 233 ~~vi~~~~-~~~~~~~~v~~~~---~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~ 307 (371)
++++++++ +...+.+.+++.+ ++++|+|||++|++ .+..++++|+++ |+++.+|.... .+..++... +.+++
T Consensus 80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~-~~~~~~~~l~~~-G~~v~~G~~~~-~~~~~~~~~l~~k~~ 156 (189)
T d1gu7a2 80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGK-SSTGIARKLNNN-GLMLTYGGMSF-QPVTIPTSLYIFKNF 156 (189)
T ss_dssp SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHH-HHHHHHHTSCTT-CEEEECCCCSS-CCEEECHHHHHHSCC
T ss_pred cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcc-hhhhhhhhhcCC-cEEEEECCccC-CCccCcHHHHHHCCc
Confidence 99997742 1234555566554 33899999999974 789999999997 99999997654 334444333 25689
Q ss_pred EEEecccCCCCcC------CCHHHHHHHHHcCC
Q 017460 308 TLKGSLFGGWKPK------TDLPSLVNRYLKKE 334 (371)
Q Consensus 308 ~i~g~~~~~~~~~------~~~~~~~~~~~~~~ 334 (371)
++.|++++.+... +.+.++++++++|+
T Consensus 157 ~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 189 (189)
T d1gu7a2 157 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK 189 (189)
T ss_dssp EEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence 9999876543211 23555666666654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=5.1e-22 Score=166.40 Aligned_cols=127 Identities=27% Similarity=0.313 Sum_probs=116.7
Q ss_pred hhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCC
Q 017460 162 EKICLLSCGLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDN 241 (371)
Q Consensus 162 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~ 241 (371)
++.+++...++|||+++ +.+++++|++|||+|+|++|++++++|+++|+.+|++++.+++|++.++++|+++++++.
T Consensus 2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~-- 78 (195)
T d1kola2 2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSL-- 78 (195)
T ss_dssp HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTS--
T ss_pred chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCC--
Confidence 46778888999999997 789999999999999999999999999999998999999999999999999999999987
Q ss_pred CchHHHHHHHHhCC-CccEEEEcCCC---------------hHHHHHHHHHhccCCceEEEecCCCC
Q 017460 242 NEPVQQVIKRITDG-GADYSFECIGD---------------TGMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 242 ~~~~~~~v~~~~~g-g~dvVid~~g~---------------~~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
..++.+.+.++|++ ++|++||++|. ...++.++++++++ |+++.+|....
T Consensus 79 ~~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~ 144 (195)
T d1kola2 79 DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVT 144 (195)
T ss_dssp SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCS
T ss_pred CcCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCC
Confidence 67899999999998 99999999983 35799999999997 99999997654
|
| >d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.87 E-value=9.8e-25 Score=180.78 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=121.0
Q ss_pred ceeeeEEEEecCCCC-----eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC--------------------e
Q 017460 10 VITCKAAVAWGAGQP-----LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ--------------------C 64 (371)
Q Consensus 10 ~~~~~a~~~~~~~~~-----l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~--------------------~ 64 (371)
|.||||++++++|+| ++..++|.|+|+++||||||++++||++|++.++|.++. +
T Consensus 1 m~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~ 80 (175)
T d1gu7a1 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG 80 (175)
T ss_dssp CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred CceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence 579999999999986 444577788899999999999999999999999886532 4
Q ss_pred EEEEEeeCCCCCCCCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeE
Q 017460 65 CRIVESVGPGVTEFNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEY 144 (371)
Q Consensus 65 ~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~ 144 (371)
+|+|+++|.++..++.||+|...+. . .|+|+||
T Consensus 81 ~g~V~~~~~~~~~~~~g~~v~~~~~-----------------------------~------------------~g~~aey 113 (175)
T d1gu7a1 81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------N------------------FGTWRTH 113 (175)
T ss_dssp EEEEEEECTTCCSCCTTCEEEESSS-----------------------------C------------------CCCSBSE
T ss_pred ccccccccccccccccccceecccc-----------------------------c------------------cccccce
Confidence 9999999999999999999986521 1 2489999
Q ss_pred EEeeCCceEECCCCCChhhhhhcchhhhhHHhHhhh-hcCCCCCCEEEEEc-c-ChHHHHHHH
Q 017460 145 TVVHSGCAVKVSSIAPLEKICLLSCGLSAGLGAAWN-VADISKGSTVVIFG-L-GTVGLSVAQ 204 (371)
Q Consensus 145 ~~~~~~~~~~~P~~~~~~~aa~~~~~~~~a~~~l~~-~~~~~~~~~VlI~G-a-g~~G~~ai~ 204 (371)
+.++++.++++|++++.+.++ .+...||++++.. ..++++|++|||+| + |++|++++|
T Consensus 114 ~~v~~~~~~~iP~~~~~~~a~--~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ 174 (175)
T d1gu7a1 114 ALGNDDDFIKLPNPAQSKANG--KPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174 (175)
T ss_dssp EEEEGGGEEEECCHHHHHHTT--CSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred eeehhhhccCCCccchhhhhc--cchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence 999999999999987644444 3467788888753 46799999999997 4 679998876
|
| >d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=5.6e-24 Score=173.35 Aligned_cols=140 Identities=16% Similarity=0.088 Sum_probs=116.7
Q ss_pred eeeeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCC
Q 017460 11 ITCKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTE 77 (371)
Q Consensus 11 ~~~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~ 77 (371)
.+|||+++++++.+ |++++++.|++++|||||||+|+|||++|++.++|.++. ++|+|++ +.+.+
T Consensus 2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~ 79 (162)
T d1tt7a1 2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR 79 (162)
T ss_dssp CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence 58999999987765 999999999999999999999999999999999987652 6999998 56678
Q ss_pred CCCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCC
Q 017460 78 FNEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSS 157 (371)
Q Consensus 78 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~ 157 (371)
+++||+|+..... .|.. . .|+||||+.++++.++++|+
T Consensus 80 ~~~g~~v~~~~~~-----------------------~g~~-~------------------~G~~aey~~v~~~~l~~iP~ 117 (162)
T d1tt7a1 80 FAEGDEVIATSYE-----------------------LGVS-R------------------DGGLSEYASVPGDWLVPLPQ 117 (162)
T ss_dssp CCTTCEEEEESTT-----------------------BTTT-B------------------CCSSBSSEEECGGGEEECCT
T ss_pred cccceeeEeeecc-----------------------ceec-c------------------ccccceEEEecHHHEEECCC
Confidence 9999999876321 0111 1 25899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHhHhhhhcCCCCCCEEEEEcc
Q 017460 158 IAPLEKICLLSCGLSAGLGAAWNVADISKGSTVVIFGL 195 (371)
Q Consensus 158 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~VlI~Ga 195 (371)
++++++||++++..+|||+++. ..+...+++|||+|+
T Consensus 118 ~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga 154 (162)
T d1tt7a1 118 NLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRI 154 (162)
T ss_dssp TCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECC
Confidence 9999999999999999998763 334555677888875
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=2.4e-22 Score=167.72 Aligned_cols=171 Identities=19% Similarity=0.200 Sum_probs=124.6
Q ss_pred CChhhhhhcchhhhhHHhHhhhhcCCCCC--CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHH-HHHHcCCce
Q 017460 159 APLEKICLLSCGLSAGLGAAWNVADISKG--STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVTE 234 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~--~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~ 234 (371)
+|+.+.| ++++..|||+++.+.+++++| ++|||+|+ |++|++++|+||.+|+++|+++++++++.. .++++|+++
T Consensus 2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~ 80 (187)
T d1vj1a2 2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA 80 (187)
T ss_dssp GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence 4555544 566899999999888999987 88999985 999999999999999977777777766655 457899999
Q ss_pred EeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCC-Ceeecc--------hheeee
Q 017460 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLK-PEVAAH--------YGLFLS 305 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~--------~~~~~~ 305 (371)
++|++ .+++.+.+++.++.|+|+|||++|+ ..++.++++++++ |+++.+|..... ...+.+ .....+
T Consensus 81 vi~~~--~~~~~~~~~~~~~~GvDvv~D~vGg-~~~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k 156 (187)
T d1vj1a2 81 AVNYK--TGNVAEQLREACPGGVDVYFDNVGG-DISNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRKER 156 (187)
T ss_dssp EEETT--SSCHHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHHHT
T ss_pred Eeecc--chhHHHHHHHHhccCceEEEecCCc-hhHHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHHhc
Confidence 99998 7789999999987799999999997 4799999999997 999999864331 111111 011134
Q ss_pred ccEEEecccCCCCcC--CCHHHHHHHHHcCC
Q 017460 306 GRTLKGSLFGGWKPK--TDLPSLVNRYLKKE 334 (371)
Q Consensus 306 ~~~i~g~~~~~~~~~--~~~~~~~~~~~~~~ 334 (371)
++++.++.+..+.++ +.++++.+++.+|+
T Consensus 157 ~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk 187 (187)
T d1vj1a2 157 NITRERFTVLNYKDKFEPGILQLSQWFKEGK 187 (187)
T ss_dssp TCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred ceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence 777777765544321 23455556666654
|
| >d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.2e-21 Score=156.01 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=101.2
Q ss_pred eeEEEEecCCCC--eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC-----------eEEEEEeeCCCCCCCC
Q 017460 13 CKAAVAWGAGQP--LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ-----------CCRIVESVGPGVTEFN 79 (371)
Q Consensus 13 ~~a~~~~~~~~~--l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~-----------~~G~V~~~G~~v~~~~ 79 (371)
|||+++++++++ +++++++.|++++|||+|||.|+|||++|++...|.++. ++|+|+++|. ..++
T Consensus 1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~ 78 (146)
T d1o89a1 1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH 78 (146)
T ss_dssp CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence 899999998877 778899999999999999999999999999999887643 6999999776 4799
Q ss_pred CCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCCC
Q 017460 80 EGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIA 159 (371)
Q Consensus 80 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~~ 159 (371)
+||+|+..... .|.. . .|+||||++++++.++++|+++
T Consensus 79 ~g~~v~~~~~~-----------------------~g~~-~------------------~G~~Aey~~v~~~~vv~lP~~l 116 (146)
T d1o89a1 79 AGQEVLLTGWG-----------------------VGEN-H------------------WGGLAEQARVKGDWLVAMPQGQ 116 (146)
T ss_dssp TTCEEEEECTT-----------------------BTTT-B------------------CCSSBSEEEECGGGCEECCTTS
T ss_pred ceeeEEeeccc-----------------------ceec-C------------------CCcceeeeeeeeeeEEECCCCC
Confidence 99999876311 1111 1 2589999999999999999999
Q ss_pred ChhhhhhcchhhhhHHhHh
Q 017460 160 PLEKICLLSCGLSAGLGAA 178 (371)
Q Consensus 160 ~~~~aa~~~~~~~~a~~~l 178 (371)
|+++||+++++..||+.++
T Consensus 117 s~~eAA~l~~a~~tA~~~~ 135 (146)
T d1o89a1 117 AAKEISLSEAPNFAEAIIN 135 (146)
T ss_dssp CCEEECGGGHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999998888886654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=3.4e-21 Score=158.38 Aligned_cols=149 Identities=14% Similarity=0.155 Sum_probs=117.8
Q ss_pred CChhhhhhcchhhhhHHhHhh---hhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce
Q 017460 159 APLEKICLLSCGLSAGLGAAW---NVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE 234 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~---~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 234 (371)
+|+.+||.++++..|||+++. +....+++++|||+|+ |++|++++|+||.+|+ +|++++++++|.+.++++|+++
T Consensus 1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~ 79 (177)
T d1o89a2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR 79 (177)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence 578999999999999998763 2333445679999975 9999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecc
Q 017460 235 FLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSL 313 (371)
Q Consensus 235 vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~ 313 (371)
++|++ +.++. +.+.+..+|.++|+++++ .+...+++++++ |+++.+|...+. ..+++... +++++++.|++
T Consensus 80 vi~~~--~~~~~---~~l~~~~~~~vvD~Vgg~-~~~~~l~~l~~~-Griv~~G~~~~~-~~~~~~~~~~~k~~~i~G~~ 151 (177)
T d1o89a2 80 VLPRD--EFAES---RPLEKQVWAGAIDTVGDK-VLAKVLAQMNYG-GCVAACGLAGGF-TLPTTVMPFILRNVRLQGVD 151 (177)
T ss_dssp EEEGG--GSSSC---CSSCCCCEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTTCS-CCCCCSHHHHHHCCEEEECC
T ss_pred ccccc--cHHHH---HHHHhhcCCeeEEEcchH-HHHHHHHHhccc-cceEeecccCCc-cccccHHHHHHCCCeEEEEe
Confidence 99886 33332 222333789999999975 799999999997 999999977552 23333222 35799999986
Q ss_pred cCC
Q 017460 314 FGG 316 (371)
Q Consensus 314 ~~~ 316 (371)
...
T Consensus 152 ~~~ 154 (177)
T d1o89a2 152 SVM 154 (177)
T ss_dssp SSS
T ss_pred ccc
Confidence 543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=5.2e-21 Score=155.73 Aligned_cols=138 Identities=18% Similarity=0.139 Sum_probs=108.3
Q ss_pred hhhhHHhH---hhhhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchH
Q 017460 170 GLSAGLGA---AWNVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPV 245 (371)
Q Consensus 170 ~~~~a~~~---l~~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~ 245 (371)
+..|||.+ |.+....+++++|||+|+ |++|++++|+||++|+ +|++++++++|.+.++++|++++++++ ++
T Consensus 4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~----~~ 78 (167)
T d1tt7a2 4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRE----DV 78 (167)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHH----HH
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEecc----ch
Confidence 44566644 445556777889999985 9999999999999999 999999999999999999999998764 22
Q ss_pred HHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCCCCeeecchhe-eeeccEEEecccC
Q 017460 246 QQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKLKPEVAAHYGL-FLSGRTLKGSLFG 315 (371)
Q Consensus 246 ~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 315 (371)
..+..+.+.+ ++|+|||++|+. .+..++++++++ |+++.+|...+ ...+++... +++++++.|+...
T Consensus 79 ~~~~~~~~~~~gvd~vid~vgg~-~~~~~~~~l~~~-G~iv~~G~~~g-~~~~~~~~~l~~k~~~i~G~~~~ 147 (167)
T d1tt7a2 79 YDGTLKALSKQQWQGAVDPVGGK-QLASLLSKIQYG-GSVAVSGLTGG-GEVPATVYPFILRGVSLLGIDSV 147 (167)
T ss_dssp CSSCCCSSCCCCEEEEEESCCTH-HHHHHHTTEEEE-EEEEECCCSSC-SCEEECSHHHHTSCCEEEECCSS
T ss_pred hchhhhcccCCCceEEEecCcHH-HHHHHHHHhccC-ceEEEeeccCC-CcccCCHHHHHHCCcEEEEEecC
Confidence 2223333444 999999999984 799999999997 99999998866 334444333 3679999997543
|
| >d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=99.54 E-value=7.5e-14 Score=109.87 Aligned_cols=127 Identities=17% Similarity=0.100 Sum_probs=92.1
Q ss_pred eeeeEEEEecC--CCC----eEEEEeecCCCCCCcEEEEEeeecCCcchhhhhcCCCCC------eEEEEEeeCCCCCCC
Q 017460 11 ITCKAAVAWGA--GQP----LVVEEVEVNPPQPEEIRIKVVCTSLCRSDITAWETQWPQ------CCRIVESVGPGVTEF 78 (371)
Q Consensus 11 ~~~~a~~~~~~--~~~----l~~~~~~~p~~~~~evlV~v~~~~i~~~D~~~~~g~~~~------~~G~V~~~G~~v~~~ 78 (371)
.+-|++++.+. |.| |++++.+.|+|++||||||++|.++++............ .+|+|++ ++.+.|
T Consensus 2 ~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~~~~g~~~~g~~vg~Vv~--S~~~~f 79 (147)
T d1v3va1 2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRLKEGAVMMGQQVARVVE--SKNSAF 79 (147)
T ss_dssp CEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGGSCTTSBCCCCEEEEEEE--ESCTTS
T ss_pred cccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEcccccccccccccCCccccceEEEEEE--eCCCcc
Confidence 45688888665 333 999999999999999999999999986532211111111 4888887 677899
Q ss_pred CCCCEEEeeecCCCCCCccccCCCCCCcccccccccccccCCCccceeccCcccccccCccceeeEEEeeCCceEECCCC
Q 017460 79 NEGEHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSI 158 (371)
Q Consensus 79 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~P~~ 158 (371)
++||+|++. ++|+||.+++++.+.++|+.
T Consensus 80 ~~GD~V~g~---------------------------------------------------~gw~ey~v~~~~~l~kv~~~ 108 (147)
T d1v3va1 80 PAGSIVLAQ---------------------------------------------------SGWTTHFISDGKGLEKLLTE 108 (147)
T ss_dssp CTTCEEEEC---------------------------------------------------CCSBSEEEECSSSCEECCTT
T ss_pred cCCCEEEEc---------------------------------------------------cCCEeEEEeccceeeEcccc
Confidence 999999865 36999999999999999876
Q ss_pred CChh-----hhhhcchhhhh-HHhHhhhhcCCCCCCEEEE
Q 017460 159 APLE-----KICLLSCGLSA-GLGAAWNVADISKGSTVVI 192 (371)
Q Consensus 159 ~~~~-----~aa~~~~~~~~-a~~~l~~~~~~~~~~~VlI 192 (371)
++.. ..+++.....| ||..+... .+.|++||+
T Consensus 109 ~~~~~~~~~~~~~lG~~Gmtaay~gl~~~--~k~Getvv~ 146 (147)
T d1v3va1 109 WPDKKIQYHEHVTKGFENMPAAFIEMLNG--ANLGKAVVT 146 (147)
T ss_dssp CCTTSSCCCEEEEECGGGHHHHHHHHHTT--CCSSEEEEE
T ss_pred ccccccchhhhHhccccchHHHHHHhhCC--CCCCCEEEe
Confidence 5432 34445445555 55566444 466999986
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.5e-14 Score=99.92 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=66.0
Q ss_pred CChhhhhhcchhhhhHHhHhh---hhcCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC
Q 017460 159 APLEKICLLSCGLSAGLGAAW---NVADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232 (371)
Q Consensus 159 ~~~~~aa~~~~~~~~a~~~l~---~~~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~ 232 (371)
+|+++|+.++++..|||.+++ +....+++++|||+|+ |++|.+++|+++.+|+ +|++++++++|.++++++|+
T Consensus 1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA 77 (77)
T d1o8ca2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA 77 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence 578999999999999988764 4456789999999975 9999999999999999 99999999999999999985
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.08 E-value=4.5e-06 Score=65.22 Aligned_cols=98 Identities=24% Similarity=0.293 Sum_probs=73.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+..+|+|+|+|.+|+.|+..|+.+|+ .|.+++.+.++++.++..... .....+ ...+.+.++ .+|+||.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~--~~~l~~~~~-----~aDivI~a 102 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSN--SAEIETAVA-----EADLLIGA 102 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECC--HHHHHHHHH-----TCSEEEEC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhh--hhhHHHhhc-----cCcEEEEe
Confidence 45789999999999999999999999 999999999999988775432 222221 334444443 58999998
Q ss_pred CCChH------HHHHHHHHhccCCceEEEecCCCC
Q 017460 264 IGDTG------MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 264 ~g~~~------~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+--+. .-++.++.++++ ..+|.+....+
T Consensus 103 alipG~~aP~lIt~~mv~~Mk~G-SVIVDvaidqG 136 (168)
T d1pjca1 103 VLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQG 136 (168)
T ss_dssp CCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred eecCCcccCeeecHHHHhhcCCC-cEEEEeecCCC
Confidence 74221 246788999997 99999976554
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.05 E-value=1.6e-05 Score=62.87 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=74.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCC-----C------------CchHHH
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPND-----N------------NEPVQQ 247 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~-----~------------~~~~~~ 247 (371)
+..+|||+|+|.+|+.|+..|+.+|+ .|.+++.+.++++.+++++...+. +... . .....+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 35689999999999999999999999 999999999999999999875431 0000 0 011122
Q ss_pred HHHHHhCCCccEEEEcCCChH------HHHHHHHHhccCCceEEEecCCCC
Q 017460 248 VIKRITDGGADYSFECIGDTG------MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 248 ~v~~~~~gg~dvVid~~g~~~------~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
.+.+... ..|+||-++--+. .-++.++.+++| +.+|.++...+
T Consensus 107 ~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidqG 155 (183)
T d1l7da1 107 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAG 155 (183)
T ss_dssp HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGT
T ss_pred HHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecCC
Confidence 3333222 6899998763221 246788999997 99999976544
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.81 E-value=0.00031 Score=54.72 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=59.2
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHH-HHHHcCCceEeCCCCCCchHHHHHHHHhCCCcc
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAFGVTEFLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
+...--.+.+|||+|+|.+|.+.+..+...|+++++++.|+.+|.+ +++++|.. ++++ .++.+.+. .+|
T Consensus 17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~----~~~~~~l~-----~~D 86 (159)
T d1gpja2 17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF----DELVDHLA-----RSD 86 (159)
T ss_dssp HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG----GGHHHHHH-----TCS
T ss_pred HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccc----hhHHHHhc-----cCC
Confidence 3333456889999999999999999999999988999999988765 45778854 4433 23444333 599
Q ss_pred EEEEcCCCh
Q 017460 259 YSFECIGDT 267 (371)
Q Consensus 259 vVid~~g~~ 267 (371)
+||.|++++
T Consensus 87 ivi~atss~ 95 (159)
T d1gpja2 87 VVVSATAAP 95 (159)
T ss_dssp EEEECCSSS
T ss_pred EEEEecCCC
Confidence 999999875
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.80 E-value=5.8e-05 Score=59.59 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=57.0
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCc
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
.+..++.++.+|||+|+|+.+.+++..++..|++++.++.|+.+|.+.+ +.++... ++.. . ...+
T Consensus 9 l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~--~-----------~~~~ 74 (167)
T d1npya1 9 IEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY-INSL--E-----------NQQA 74 (167)
T ss_dssp HHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE-ESCC--T-----------TCCC
T ss_pred HHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh-hhcc--c-----------ccch
Confidence 3666777889999999999999999999999998999999999987776 4455543 2221 0 1268
Q ss_pred cEEEEcCC
Q 017460 258 DYSFECIG 265 (371)
Q Consensus 258 dvVid~~g 265 (371)
|+||+|++
T Consensus 75 DliINaTp 82 (167)
T d1npya1 75 DILVNVTS 82 (167)
T ss_dssp SEEEECSS
T ss_pred hhheeccc
Confidence 99999986
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=97.70 E-value=0.0002 Score=60.28 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=74.5
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
-+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+++.+...+ .|..+ .++..+.+.+... |++|++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~iDiL 80 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED-ERERVRFVEEAAYALGRVDVL 80 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHHHHhcCCCCeE
Confidence 36899999985 8999999999999999 99999999999888888887543 35542 2333333443332 379999
Q ss_pred EEcCCCh-------------------------HHHHHHHHHhcc-CCceEEEecCCCC
Q 017460 261 FECIGDT-------------------------GMITTALQSCCD-GWGLAVTLGVPKL 292 (371)
Q Consensus 261 id~~g~~-------------------------~~l~~~~~~l~~-~~G~~v~~g~~~~ 292 (371)
+++.|.. ...+.++..+.+ ++|++|.+++...
T Consensus 81 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~ 138 (248)
T d2d1ya1 81 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQG 138 (248)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred EEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccc
Confidence 9988742 123444455533 2389999886544
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=97.58 E-value=0.00032 Score=59.19 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=71.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceE---eCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF---LNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v---i~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+ ++++.... .|..+ ..+..+.+..... +++|
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~iD 82 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS-EADWTLVMAAVQRRLGTLN 82 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTC-HHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCC-HHHHHHHHHHHHHHhCCCC
Confidence 5789999985 8999999999999999 999999999887765 56765432 24431 2333333333322 4799
Q ss_pred EEEEcCCCh-------------------------HHHHHHHHHhccCCceEEEecCCCC
Q 017460 259 YSFECIGDT-------------------------GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 259 vVid~~g~~-------------------------~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+++++.|.. ...+.++..++..+|++|.+++...
T Consensus 83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~ 141 (253)
T d1hxha_ 83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS 141 (253)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhh
Confidence 999998852 1234555556543499999987543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00032 Score=59.03 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCce--EeCCCCCCchHHHHHHHHhC--CCccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTE--FLNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~--vi~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ ++-.. ..|..+ .++..+.+.+... +++|+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~iDi 82 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRLDC 82 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC-HHHHHHHHHHHHHhcCCCCE
Confidence 5899999986 8999999999999999 99999999998887754 44322 235542 2333333333332 37999
Q ss_pred EEEcCCCh--------------------------HHHHHHHHHhccCCceEEEecCC
Q 017460 260 SFECIGDT--------------------------GMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 260 Vid~~g~~--------------------------~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
++++.|.. ...+.++..++.+.|+++.+++.
T Consensus 83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~ 139 (250)
T d1ydea1 83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL 139 (250)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence 99988731 12344444554434899998764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00039 Score=58.23 Aligned_cols=102 Identities=24% Similarity=0.413 Sum_probs=70.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc---eEeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT---EFLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~---~vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++.. ...|..+ .+...+.+.+... |++|
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 80 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD-PASIESVLEKIRAEFGEVD 80 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHTCSCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC-HHHhhhhhhhhhcccCCcc
Confidence 4789999986 8999999999999999 999999999887766 455543 2345542 3334444444332 3799
Q ss_pred EEEEcCCCh-------------------------HHHHHHHHHh--ccCCceEEEecCC
Q 017460 259 YSFECIGDT-------------------------GMITTALQSC--CDGWGLAVTLGVP 290 (371)
Q Consensus 259 vVid~~g~~-------------------------~~l~~~~~~l--~~~~G~~v~~g~~ 290 (371)
+++++.|.. ...+.++..+ +.+ |++|.+++.
T Consensus 81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~II~isS~ 138 (243)
T d1q7ba_ 81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRH-GRIITIGSV 138 (243)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCH
T ss_pred eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCC-CEeeeecch
Confidence 999988752 1234444554 334 999999864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=1.9e-05 Score=65.13 Aligned_cols=100 Identities=21% Similarity=0.294 Sum_probs=69.8
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~ 253 (371)
.+..++++|++||-+|+|+ |..++.+++..|. .+|++++.+++..+.+++ .+...+.-... + . ...+.
T Consensus 68 l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~-d--~---~~~~~ 140 (213)
T d1dl5a1 68 MEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG-D--G---YYGVP 140 (213)
T ss_dssp HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-C--G---GGCCG
T ss_pred HHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC-c--h---HHccc
Confidence 4778899999999999876 8888889988763 389999999987777643 44432221110 0 0 01111
Q ss_pred -CCCccEEEEcCCChHHHHHHHHHhccCCceEEE
Q 017460 254 -DGGADYSFECIGDTGMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 254 -~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~ 286 (371)
.+.||+|+...+-....+..++.|+++ |+++.
T Consensus 141 ~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~ 173 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIV 173 (213)
T ss_dssp GGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEE
T ss_pred cccchhhhhhhccHHHhHHHHHHhcCCC-cEEEE
Confidence 237999998776555556788999998 99876
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.41 E-value=7.2e-05 Score=61.47 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=72.3
Q ss_pred hhhhHHhHhhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceEeCCCCCCchH
Q 017460 170 GLSAGLGAAWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPV 245 (371)
Q Consensus 170 ~~~~a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vi~~~~~~~~~ 245 (371)
+...|. +.+..++++|++||.+|+|+ |..++.+++..|. +|++++.+++-.+.+ +++|.+.+.-... + .
T Consensus 64 P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g-d-~- 136 (215)
T d1jg1a_ 64 PHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG-D-G- 136 (215)
T ss_dssp HHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-C-G-
T ss_pred hhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEEC-c-c-
Confidence 444443 23778899999999999875 7777788888786 899999998755544 5577654332210 1 0
Q ss_pred HHHHHHHhC-CCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 246 QQVIKRITD-GGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 246 ~~~v~~~~~-gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
...+.. +.||.|+-..+.+..-...++.|+++ |+++..
T Consensus 137 ---~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p 175 (215)
T d1jg1a_ 137 ---SKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP 175 (215)
T ss_dssp ---GGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred ---ccCCcccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence 011122 37999988766554456778899998 998863
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.39 E-value=0.001 Score=55.77 Aligned_cols=103 Identities=18% Similarity=0.323 Sum_probs=69.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-----HHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-----KAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+ ++.|... ..|..+ .++..+.+.+...
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 4789999986 8999999999999999 999999998876543 4456542 235542 2333333433322
Q ss_pred CCccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCceEEEecCC
Q 017460 255 GGADYSFECIGDT-------------------------GMITTALQSCCD-GWGLAVTLGVP 290 (371)
Q Consensus 255 gg~dvVid~~g~~-------------------------~~l~~~~~~l~~-~~G~~v~~g~~ 290 (371)
|++|+++++.|.. ...+.++..+.. ++|+++.+++.
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~ 143 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL 143 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence 3799999998752 123445555633 23899988763
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.0013 Score=54.81 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=70.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
.|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ ++.|... ..|..+ .+.....++.... |
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcC
Confidence 4899999986 8999998888888999 999999999887654 4455432 335552 2333344443322 3
Q ss_pred CccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCceEEEecCCCCC
Q 017460 256 GADYSFECIGDT-------------------------GMITTALQSCCD-GWGLAVTLGVPKLK 293 (371)
Q Consensus 256 g~dvVid~~g~~-------------------------~~l~~~~~~l~~-~~G~~v~~g~~~~~ 293 (371)
.+|+++++.|.. ...+.++..+.. ++|+++.+++....
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~ 147 (244)
T d1yb1a_ 84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH 147 (244)
T ss_dssp CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C
T ss_pred CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhc
Confidence 799999998862 122334444433 23889999876653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=97.35 E-value=0.0011 Score=56.00 Aligned_cols=79 Identities=28% Similarity=0.438 Sum_probs=56.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+|+++||+|+ +++|++.+..+...|+ +|+.+++++++.+.+ ++.|... ..|..+ .++..+.+..... |
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 5899999986 8999999999999999 999999999887654 4455432 235542 2333444433322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++++.|.
T Consensus 82 ~iDilVnnaG~ 92 (260)
T d1zema1 82 KIDFLFNNAGY 92 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCeehhhhcc
Confidence 79999998874
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.31 E-value=4.5e-05 Score=64.26 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=68.2
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH----cC-CceEeCCCCCCchHHHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FG-VTEFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg-~~~vi~~~~~~~~~~~~v~~~ 252 (371)
....++++|++||-.|+|+ |.+++.+|++.|. .+|++++.+++..+.+++ ++ ...+--.. .++ .+.
T Consensus 78 i~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~---~Di----~~~ 149 (250)
T d1yb2a1 78 IMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR---SDI----ADF 149 (250)
T ss_dssp ---CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC---SCT----TTC
T ss_pred HHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE---eee----ecc
Confidence 3578899999999999875 6777788887653 389999999998888754 33 22221111 111 111
Q ss_pred h-CCCccEEE-EcCCChHHHHHHHHHhccCCceEEEecC
Q 017460 253 T-DGGADYSF-ECIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 253 ~-~gg~dvVi-d~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
. .+.||.|+ |.......++.+.+.|++| |+++.+..
T Consensus 150 ~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~P 187 (250)
T d1yb2a1 150 ISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP 187 (250)
T ss_dssp CCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred cccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEeC
Confidence 2 23799886 4444445689999999998 99987643
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00082 Score=52.83 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=52.2
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cC---CceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FG---VTEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg---~~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
..+|++|||+|+|+.+.+++..+..+|+ +++.+.|+.+|.+.+.+ +. ....+... + .....+|+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~----~-------~~~~~~dl 82 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMD----E-------LEGHEFDL 82 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSG----G-------GTTCCCSE
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhcccccccccc----c-------ccccccce
Confidence 4578999999999999999999999999 89999999998776633 32 22222221 1 11127899
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
||+|+..
T Consensus 83 iIN~Tp~ 89 (170)
T d1nyta1 83 IINATSS 89 (170)
T ss_dssp EEECCSC
T ss_pred eeccccc
Confidence 9999865
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.29 E-value=0.00054 Score=57.28 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=58.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceE-eCCCCCCchHHHHHHHHhC--CCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEF-LNPNDNNEPVQQVIKRITD--GGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~v-i~~~~~~~~~~~~v~~~~~--gg~dvV 260 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ +++++..+ .|..+ .++..+.+.+... +++|++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iDil 81 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD-PASVERGFAEALAHLGRLDGV 81 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC-HHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC-HHHHHHHHHHHHHhcCCceEE
Confidence 4789999986 8999999999999999 999999999888776 55666443 35542 3333333333322 379999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
|++.|.
T Consensus 82 VnnAG~ 87 (242)
T d1ulsa_ 82 VHYAGI 87 (242)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 998875
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.00086 Score=56.07 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=55.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce--EeCCCCCCchHHHHHHHHhCC--CccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE--FLNPNDNNEPVQQVIKRITDG--GADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~--vi~~~~~~~~~~~~v~~~~~g--g~dv 259 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++++... .+|.. +.+ .+++.... ++|+
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~--d~~---~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLG--DWE---ATERALGSVGPVDL 79 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTT--CHH---HHHHHHTTCCCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCC--CHH---HHHHHHHHhCCceE
Confidence 6899999985 8999999999999999 999999999987766 4454322 33554 333 33333333 7999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
++++.|.
T Consensus 80 lVnnAg~ 86 (244)
T d1pr9a_ 80 LVNNAAV 86 (244)
T ss_dssp EEECCCC
T ss_pred EEecccc
Confidence 9998875
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.21 E-value=0.0015 Score=51.34 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=62.9
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+++|||+|+|.+|...++.+...|. +|++++++.++.+.+.+ ++...+.... ........... ...|.++.+..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~---~~~~~~~~~~i-~~~~~~i~~~~ 76 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLD---VNDDAALDAEV-AKHDLVISLIP 76 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECC---TTCHHHHHHHH-TTSSEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhccccccccccc---ccchhhhHhhh-hccceeEeecc
Confidence 6789999999999999999988899 99999999999888755 4433222111 11111112211 25788888887
Q ss_pred ChHHHHHHHHHhccCCceEEEec
Q 017460 266 DTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
..........++..+ -.++.+.
T Consensus 77 ~~~~~~~~~~~~~~~-~~~~~~~ 98 (182)
T d1e5qa1 77 YTFHATVIKSAIRQK-KHVVTTS 98 (182)
T ss_dssp GGGHHHHHHHHHHHT-CEEECSS
T ss_pred chhhhHHHHHHHhhc-cceeecc
Confidence 655444444555554 5555554
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.21 E-value=0.0014 Score=54.95 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=55.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+++.+||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+ ++.|... ..|..+ .++..+.+.+... |
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence 4778899986 8999999998888999 999999998877654 4455432 235542 3334444443322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++.+.|.
T Consensus 87 ~iDilvnnag~ 97 (251)
T d2c07a1 87 NVDILVNNAGI 97 (251)
T ss_dssp CCCEEEECCCC
T ss_pred Cceeeeecccc
Confidence 89999998875
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.19 E-value=0.0011 Score=55.33 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce--EeCCCCCCchHHHHHHHHhC--CCccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE--FLNPNDNNEPVQQVIKRITD--GGADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~--vi~~~~~~~~~~~~v~~~~~--gg~dv 259 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ ++++... .+|.. +.+ .+++... |++|+
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~--~~~---~v~~~~~~~g~iDi 77 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLG--DWD---ATEKALGGIGPVDL 77 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTT--CHH---HHHHHHTTCCCCSE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCC--CHH---HHHHHHHHcCCCeE
Confidence 5899999986 8999999999999999 999999999887666 4454322 23554 332 3444443 37999
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
++++.|.
T Consensus 78 lVnnAg~ 84 (242)
T d1cyda_ 78 LVNNAAL 84 (242)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9998874
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.14 E-value=0.00083 Score=56.17 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=57.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++-.. ..|..+ .++..+.+.+... +++|
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 82 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGLH 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC-HHHHHHHHHHHHHHhCCCe
Confidence 5889999986 8999999999999999 999999999988766 4555322 235542 3334444444333 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++++.|.
T Consensus 83 ilinnAG~ 90 (244)
T d1nffa_ 83 VLVNNAGI 90 (244)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999885
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.13 E-value=0.0018 Score=54.54 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=55.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc---eEeCCCCCCchHHHHH---HHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT---EFLNPNDNNEPVQQVI---KRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~---~vi~~~~~~~~~~~~v---~~~~~ 254 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ ++.+.. ...|..+ .++....+ .+..+
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSMFG 84 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC-HHHHHHHHHHHHHHhC
Confidence 4899999986 8999999999999999 999999999887655 233332 1235541 22333333 33334
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
|.+|+++++.|.
T Consensus 85 g~idilvnnAG~ 96 (259)
T d1xq1a_ 85 GKLDILINNLGA 96 (259)
T ss_dssp TCCSEEEEECCC
T ss_pred CCcccccccccc
Confidence 579999999885
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.11 E-value=0.0011 Score=53.06 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=54.7
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-----cCC-ceEeCCCCCCchHHHHHHHHhCCC
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGV-TEFLNPNDNNEPVQQVIKRITDGG 256 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg~-~~vi~~~~~~~~~~~~v~~~~~gg 256 (371)
--+|++|||+|+ |++|...+..+...|+ +|+.++++.++.+.+.+ ... ....|.. + .+.+.+.. ++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~--~---~~~~~~~~-~~ 92 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETA--D---DASRAEAV-KG 92 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECC--S---HHHHHHHT-TT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhcc--c---HHHHHHHh-cC
Confidence 346899999986 9999999999999999 99999999988766532 222 2234443 2 22334433 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|++|++.|.
T Consensus 93 iDilin~Ag~ 102 (191)
T d1luaa1 93 AHFVFTAGAI 102 (191)
T ss_dssp CSEEEECCCT
T ss_pred cCeeeecCcc
Confidence 9999999874
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=97.11 E-value=0.0031 Score=52.44 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=58.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+++||+|+ +++|.+.++-+...|+ +|+.+.++.++.+.+ ++++... ..|.++ .++..+.+..... +++|
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~-~~~i~~~~~~i~~~~g~iD 81 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH 81 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCC-HHHHHHHHHHHHHHhCCcc
Confidence 5899999986 8999999999999999 999999999887665 6677543 235542 3344444444433 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++.+.+.
T Consensus 82 iLinnAg~ 89 (241)
T d2a4ka1 82 GVAHFAGV 89 (241)
T ss_dssp EEEEGGGG
T ss_pred Eecccccc
Confidence 99998764
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0029 Score=53.12 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=56.1
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e----EeCCCCCCchHHHHHHHHhC
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT-E----FLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~----vi~~~~~~~~~~~~v~~~~~ 254 (371)
-+|+++||+|+ +++|.+.+..+...|+ +|+.+.+++++.+.+ ++.+.. . ..|..+ .++..+.+.....
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRS 85 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC-HHHHHHHHHHHHH
Confidence 35889999986 8999999999989999 999999999887664 333321 1 235542 3334344433332
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
|++|++|.+.|.
T Consensus 86 ~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 86 QHSGVDICINNAGL 99 (257)
T ss_dssp HHCCCSEEEECCCC
T ss_pred hcCCCCEEEecccc
Confidence 379999998875
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0016 Score=51.71 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=51.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcC----C-ceEeCCCCCCchHHHHHHHHhCC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFG----V-TEFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg----~-~~vi~~~~~~~~~~~~v~~~~~g 255 (371)
-++.+|||+|+|+.+.+++..+...|+++++.+.|++++.+.+. +++ . ..+.+..+ ...+.+.+ .
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~ 89 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-QQAFAEAL-----A 89 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHH-----H
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc-ccchhhhh-----c
Confidence 36789999999999999999888899989999999887665432 222 2 12333321 12222222 1
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|+||+|++-
T Consensus 90 ~~diiIN~Tp~ 100 (182)
T d1vi2a1 90 SADILTNGTKV 100 (182)
T ss_dssp TCSEEEECSST
T ss_pred ccceeccccCC
Confidence 68999999863
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.10 E-value=0.00072 Score=56.99 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=58.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+++||+|+ +++|++.+..+...|+ +|+.+++++++.+.+ +++|... ..|..+ .++..+.+.+... |++|
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~~g~iD 81 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD-QASIDRCVAELLDRWGSID 81 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC-HHHHHHHHHHHHHHhCCcc
Confidence 4788999986 8999999999999999 999999999887665 6677543 335542 3333444443332 4899
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++++.|.
T Consensus 82 ilVnnAg~ 89 (256)
T d1k2wa_ 82 ILVNNAAL 89 (256)
T ss_dssp EEEECCCC
T ss_pred EEEeeccc
Confidence 99998885
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=97.08 E-value=0.0011 Score=55.80 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=56.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchH---HHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPV---QQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~---~~~v~~~~~ 254 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.+... ..|..+ .++. .+.+.+..+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~-~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHVFD 82 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC-HHHHHHHHHHHHHHhC
Confidence 5899999985 8999999999999999 999999999876654 4455533 235542 2222 233334444
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+..|+++.+.|.
T Consensus 83 g~idilinnag~ 94 (258)
T d1ae1a_ 83 GKLNILVNNAGV 94 (258)
T ss_dssp SCCCEEEECCCC
T ss_pred CCcEEEeccccc
Confidence 579999998875
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=97.04 E-value=0.001 Score=55.87 Aligned_cols=79 Identities=28% Similarity=0.333 Sum_probs=56.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++... ..|..+ .++..+.+.+... |++|
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 81 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGSVD 81 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC-HHHHHHHHHHHHHHcCCcc
Confidence 5889999986 8999999999988999 999999999887665 5666432 235542 2333333333322 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++++.|.
T Consensus 82 ilVnnAg~ 89 (254)
T d1hdca_ 82 GLVNNAGI 89 (254)
T ss_dssp EEEECCCC
T ss_pred EEEecCcc
Confidence 99998875
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.0021 Score=49.51 Aligned_cols=93 Identities=19% Similarity=0.299 Sum_probs=68.5
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+-.|++|+|+|-|-+|.-.++.++.+|+ +|++++.++.+.-.+.--|.. +. .+.+.+ ...|+++-+
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~-v~-------~~~~a~-----~~adivvta 86 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYE-VT-------TMDEAC-----QEGNIFVTT 86 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC-------CHHHHT-----TTCSEEEEC
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceE-ee-------ehhhhh-----hhccEEEec
Confidence 4579999999999999999999999999 999999999776555444442 22 122221 157999999
Q ss_pred CCChHH-HHHHHHHhccCCceEEEecCCC
Q 017460 264 IGDTGM-ITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~~-l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+|.... -.+.++.|+++ ..+...|...
T Consensus 87 TGn~~vI~~eh~~~MKdg-aIL~N~Ghfd 114 (163)
T d1li4a1 87 TGCIDIILGRHFEQMKDD-AIVCNIGHFD 114 (163)
T ss_dssp SSCSCSBCHHHHTTCCTT-EEEEECSSST
T ss_pred CCCccchhHHHHHhccCC-eEEEEecccc
Confidence 997543 35778889985 5666666543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.01 E-value=0.003 Score=53.54 Aligned_cols=102 Identities=21% Similarity=0.229 Sum_probs=68.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh-hhHH----HHHHcCCceE---eCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCE----KAKAFGVTEF---LNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~-~~~~----~~~~lg~~~v---i~~~~~~~~~~~~v~~~~~-- 254 (371)
+|+++||.|+ +++|.+.++.+...|+ +|+.++++. ++.+ .+++.|.+.. .|..+ .+++.+.+.+...
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEAVKIF 94 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCC-HHHHHHHHHHHHHHh
Confidence 4889999986 8999999999999999 898887664 4333 3355665432 24441 3444555444433
Q ss_pred CCccEEEEcCCCh-------------------------HHHHHHHHHhccCCceEEEecCC
Q 017460 255 GGADYSFECIGDT-------------------------GMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 255 gg~dvVid~~g~~-------------------------~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+++|+++.+.+.. ...+.++..|... |+++.+++.
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~ 154 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI 154 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-ccccccccc
Confidence 3799999988752 1245666677876 888888654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=96.98 E-value=0.001 Score=56.66 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=56.4
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ +++|... ..|..+ .++..+.+.+... +.+|
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id 81 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS-LEDQKQAASRCVARFGKID 81 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc-HHHHHHHHHHHHHHhCCcc
Confidence 5899999985 8999999999999999 999999999987665 5566432 235442 2333344433332 3799
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
+++++.|
T Consensus 82 ilvnnAG 88 (276)
T d1bdba_ 82 TLIPNAG 88 (276)
T ss_dssp EEECCCC
T ss_pred ccccccc
Confidence 9999887
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0012 Score=55.16 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=57.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCce-EeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~-vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+.+ .+... +.|.. .....+.+.+.. +++|++++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~-~~id~lVn 80 (245)
T d2ag5a1 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVT--KKKQIDQFANEV-ERLDVLFN 80 (245)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTT--CHHHHHHHHHHC-SCCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeecc--cccccccccccc-ccceeEEe
Confidence 5889999985 8999999999999999 99999999988877755 34332 33443 444444444433 37999999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.|.
T Consensus 81 ~ag~ 84 (245)
T d2ag5a1 81 VAGF 84 (245)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8875
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.95 E-value=0.0035 Score=48.65 Aligned_cols=87 Identities=22% Similarity=0.325 Sum_probs=60.5
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC-ceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
+|.|+|+|.+|...+..++..|. +|++.++++++++.++++|. +...+.. + .+ ...|+||-++...
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~----~---~~-----~~~DiIilavp~~ 68 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDL----S---LL-----QTAKIIFLCTPIQ 68 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCG----G---GG-----TTCSEEEECSCHH
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeec----c---cc-----cccccccccCcHh
Confidence 58899999999988888888999 99999999999999999885 3333221 1 11 2689999998753
Q ss_pred H---HHHHHHHHhccCCceEEEecC
Q 017460 268 G---MITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 268 ~---~l~~~~~~l~~~~G~~v~~g~ 289 (371)
. .++.....+.++ -.++.++.
T Consensus 69 ~~~~vl~~l~~~l~~~-~iv~~~~s 92 (165)
T d2f1ka2 69 LILPTLEKLIPHLSPT-AIVTDVAS 92 (165)
T ss_dssp HHHHHHHHHGGGSCTT-CEEEECCS
T ss_pred hhhhhhhhhhhhcccc-cceeeccc
Confidence 2 233333344443 44555543
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.95 E-value=0.00025 Score=59.21 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=63.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC----chHHHHHHHHhCC-CccE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN----EPVQQVIKRITDG-GADY 259 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~----~~~~~~v~~~~~g-g~dv 259 (371)
+|++|||+|+ +++|.+.++.+...|+ +|+.+++++.+.. .....+...... +.....+.+..+. ++|+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~ 74 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA 74 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc-----cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence 4789999986 8999999999999999 9999877654321 111122111001 1123333344444 7999
Q ss_pred EEEcCCCh--------------------------HHHHHHHHHhccCCceEEEecCCCC
Q 017460 260 SFECIGDT--------------------------GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 260 Vid~~g~~--------------------------~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+|++.|.. ...+.++..++++ |+++.+++...
T Consensus 75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~~~ 132 (236)
T d1dhra_ 75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAKAA 132 (236)
T ss_dssp EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccHHH
Confidence 99988741 1234455567886 99999976543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.94 E-value=0.0077 Score=43.41 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=62.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhh--HHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+|.+|||+|+|.+|..-++.+...|+ +|++++..... ...+++-+. ......-...++ .++++|+-+
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i-~~~~~~~~~~dl---------~~~~lv~~a 79 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGML-TLVEGPFDETLL---------DSCWLAIAA 79 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSC-EEEESSCCGGGG---------TTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCc-eeeccCCCHHHh---------CCCcEEeec
Confidence 37899999999999999999999999 88887554432 223333222 233211001111 268999999
Q ss_pred CCChHHHHHHHHHhccCCceEEEecCC
Q 017460 264 IGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 264 ~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+++...-+...+..++. |..|.+.+.
T Consensus 80 t~d~~~n~~i~~~a~~~-~ilVNv~D~ 105 (113)
T d1pjqa1 80 TDDDTVNQRVSDAAESR-RIFCNVVDA 105 (113)
T ss_dssp CSCHHHHHHHHHHHHHT-TCEEEETTC
T ss_pred CCCHHHHHHHHHHHHHc-CCEEEeCCC
Confidence 98875555666777775 888887654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=96.91 E-value=0.0018 Score=54.90 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=56.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC---ce--EeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV---TE--FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~---~~--vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++. .. ..|..+ .++....+.+... |.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence 5889999986 8999999999999999 999999999887765 34432 22 235542 3344444443332 38
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|+++++.|.
T Consensus 83 iD~lVnnAG~ 92 (268)
T d2bgka1 83 LDIMFGNVGV 92 (268)
T ss_dssp CCEEEECCCC
T ss_pred cceecccccc
Confidence 9999998873
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.0014 Score=55.14 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=55.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--G 255 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--g 255 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.|... ..|..+ .++..+.+..... |
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~-~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 5899999986 8999999999999999 999999998876654 4556432 235441 2333333333322 3
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
++|+++++.|.
T Consensus 88 ~iDilvnnAG~ 98 (255)
T d1fmca_ 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEeeeCCcC
Confidence 79999998875
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=96.89 E-value=0.00095 Score=54.88 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=66.5
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC--c--eEeCCCCCCchHHHHHHHHhC
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV--T--EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~--~--~vi~~~~~~~~~~~~v~~~~~ 254 (371)
.+..++++|++||-+|+|. |..++.+++. +. +|++++.+++-.+.+++.-. . .++... ....+ ...
T Consensus 63 l~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d-~~~g~------~~~ 132 (224)
T d1vbfa_ 63 LDELDLHKGQKVLEIGTGI-GYYTALIAEI-VD-KVVSVEINEKMYNYASKLLSYYNNIKLILGD-GTLGY------EEE 132 (224)
T ss_dssp HHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESC-GGGCC------GGG
T ss_pred HHHhhhcccceEEEecCCC-CHHHHHHHHH-hc-ccccccccHHHHHHHHHHHhcccccccccCc-hhhcc------hhh
Confidence 3677899999999999874 6677777775 44 89999999998887765321 1 122111 00011 112
Q ss_pred CCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 255 GGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 255 gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
+.||.|+-+.+.+...+..++.|+++ |++|..
T Consensus 133 ~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p 164 (224)
T d1vbfa_ 133 KPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP 164 (224)
T ss_dssp CCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred hhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence 37999887665555556778999998 998874
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=96.88 E-value=0.0022 Score=54.03 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=55.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHH---hC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRI---TD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~---~~ 254 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.|... ..|..+ .++..+.+.+. .+
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC-HHHHHHHHHHHHHHhC
Confidence 5899999986 8999999999999999 999999999887654 3445432 235541 23333333333 23
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+.+|+++++.|.
T Consensus 85 ~~idilvnnAG~ 96 (259)
T d2ae2a_ 85 GKLNILVNNAGI 96 (259)
T ss_dssp TCCCEEEECCCC
T ss_pred CCceEEEECCce
Confidence 369999999884
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.87 E-value=0.0062 Score=45.27 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=55.8
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-cCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-FGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|+|.|.|.+|...++.+...|. .|++++.++++.+.+++ ++...+. |.. + .+.+++..-..+|.++-++++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~vi~Gd~~--~---~~~l~~~~i~~a~~vv~~t~~ 75 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCT--K---IKTLEDAGIEDADMYIAVTGK 75 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTT--S---HHHHHHTTTTTCSEEEECCSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhhhccCccc--c---hhhhhhcChhhhhhhcccCCc
Confidence 68999999999999999999999 99999999999988854 6765444 222 2 223333322378999998887
Q ss_pred hH
Q 017460 267 TG 268 (371)
Q Consensus 267 ~~ 268 (371)
.+
T Consensus 76 d~ 77 (132)
T d1lssa_ 76 EE 77 (132)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.87 E-value=0.0025 Score=47.59 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=55.4
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
+++|+|.|.+|...++.+...|. .|++++.++++.+.+++.|...++ |.. +.+. +.+..-..+|.++-++++.
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~gd~~--~~~~---l~~a~i~~a~~vi~~~~~~ 75 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANAT--EENE---LLSLGIRNFEYVIVAIGAN 75 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEECCTT--CTTH---HHHHTGGGCSEEEECCCSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceeeecc--cchh---hhccCCccccEEEEEcCch
Confidence 47888999999999999999999 999999999999999888876555 332 2333 2222112688888888764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.85 E-value=0.0027 Score=50.07 Aligned_cols=85 Identities=14% Similarity=0.191 Sum_probs=58.1
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCC--------CCchHHHHHHHHhCCCcc
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPND--------NNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~--------~~~~~~~~v~~~~~gg~d 258 (371)
+.++.|+|+|.+|++.+..+...|+ .|.++++++++.+.+++.+......... ...+..+.+ ..+|
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~aD 74 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----KDAD 74 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----TTCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-----cCCC
Confidence 3689999999999999999999999 9999999999999887766432111000 001222222 2689
Q ss_pred EEEEcCCChHHHHHHHHHhc
Q 017460 259 YSFECIGDTGMITTALQSCC 278 (371)
Q Consensus 259 vVid~~g~~~~l~~~~~~l~ 278 (371)
+||-++.... .+..++.++
T Consensus 75 ~iii~v~~~~-~~~~~~~i~ 93 (184)
T d1bg6a2 75 VILIVVPAIH-HASIAANIA 93 (184)
T ss_dssp EEEECSCGGG-HHHHHHHHG
T ss_pred EEEEEEchhH-HHHHHHHhh
Confidence 9999998753 444444433
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.84 E-value=0.0061 Score=52.36 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=52.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh---------hhHHH----HHHcCCceEeCCCCCCchHHHHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP---------EKCEK----AKAFGVTEFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~---------~~~~~----~~~lg~~~vi~~~~~~~~~~~~v~~ 251 (371)
+|+++||+|+ +++|.+.+..+...|+ +|++.+++. ++.+. ++..+.....+..+ ..+..+.+..
T Consensus 6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v~~ 83 (302)
T d1gz6a_ 6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLVKT 83 (302)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccch-HHHHHHHHHH
Confidence 4889999986 8999999999999999 999886543 22322 23344444555542 3344444444
Q ss_pred HhC--CCccEEEEcCCC
Q 017460 252 ITD--GGADYSFECIGD 266 (371)
Q Consensus 252 ~~~--gg~dvVid~~g~ 266 (371)
... |++|++|++.|.
T Consensus 84 ~~~~~G~iDiLVnNAGi 100 (302)
T d1gz6a_ 84 ALDTFGRIDVVVNNAGI 100 (302)
T ss_dssp HHHHTSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCcc
Confidence 332 379999999885
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.83 E-value=0.0028 Score=53.27 Aligned_cols=102 Identities=19% Similarity=0.316 Sum_probs=67.4
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHH----HHHcCCceE---eCCCCCCchHHHHHHHHhC-
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEK----AKAFGVTEF---LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~----~~~lg~~~v---i~~~~~~~~~~~~v~~~~~- 254 (371)
-.|+++||+|+ +++|.+.++.+...|+ +|+.+ .++++..+. +++.|.+.. .|..+ .++..+.+.....
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVSH 81 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCC-HHHHHHHHHHHHHH
Confidence 35899999986 8999999999999999 78775 455554433 456676432 24431 2333344443332
Q ss_pred -CCccEEEEcCCCh-------------------------HHHHHHHHHhccCCceEEEecC
Q 017460 255 -GGADYSFECIGDT-------------------------GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 255 -gg~dvVid~~g~~-------------------------~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
+++|+++.+.|.. ...+.++..++.. |.++.+.+
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s 141 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSS 141 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Cccccccc
Confidence 3799999988852 1345666777776 88777754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.0026 Score=53.85 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=52.9
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-----cCCce-Ee--CCCCCCchHHHHHH-HHh-
Q 017460 185 SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----FGVTE-FL--NPNDNNEPVQQVIK-RIT- 253 (371)
Q Consensus 185 ~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----lg~~~-vi--~~~~~~~~~~~~v~-~~~- 253 (371)
-+|+++||+|+ +++|++.+..+...|+ +|+.+.+++++++.+.+ .+... .+ +.. +......+. ...
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~ 88 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTME--DMTFAEQFVAQAGK 88 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTT--CHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhh--hHHHHHHHHHHHHH
Confidence 46899999986 8999999999988999 99999999998876522 33322 22 222 223222222 221
Q ss_pred -CCCccEEEEcCCC
Q 017460 254 -DGGADYSFECIGD 266 (371)
Q Consensus 254 -~gg~dvVid~~g~ 266 (371)
.+..|+++.+.|.
T Consensus 89 ~~g~~~~li~nag~ 102 (269)
T d1xu9a_ 89 LMGGLDMLILNHIT 102 (269)
T ss_dssp HHTSCSEEEECCCC
T ss_pred HhCCcccccccccc
Confidence 2378998887664
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.81 E-value=0.003 Score=54.02 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=68.9
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHHh
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vi~~~~~~~~~~~~v~~~~ 253 (371)
+.+++++++|++||=+|+|- |-.++.+|+..|+ +|+.++.+++..+.+ ++.|....+... ..++ ...
T Consensus 53 ~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~--~~d~-----~~~ 123 (291)
T d1kpia_ 53 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVR--IQGW-----EEF 123 (291)
T ss_dssp HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEE--ECCG-----GGC
T ss_pred HHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhh--hhcc-----ccc
Confidence 45888999999999999874 4457788888999 999999999886655 445653222111 0111 122
Q ss_pred CCCccEEEE-----cCCC----------hHHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADYSFE-----CIGD----------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dvVid-----~~g~----------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.||.|+. .++. ...++.+.+.|+|+ |+++.-.
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~ 172 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHT 172 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEE
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEE
Confidence 348998865 2332 23577888999998 9988643
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=96.80 E-value=0.0027 Score=53.53 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=71.4
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHH----HcCCc-eE-eCCCCCCchHHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAK----AFGVT-EF-LNPNDNNEPVQQVIK 250 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~-~v-i~~~~~~~~~~~~v~ 250 (371)
+...+++++|++||=.|+|+ |.+++.+|+..|. .+|++++.+++..+.++ .+|.. .+ +... +. .
T Consensus 95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~----d~----~ 165 (266)
T d1o54a_ 95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR----DI----S 165 (266)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC----CG----G
T ss_pred HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec----cc----c
Confidence 34778999999999999876 7777888888753 39999999999887774 45642 22 2211 11 1
Q ss_pred HHhCC-CccEEEEcCCC-hHHHHHHHHHhccCCceEEEec
Q 017460 251 RITDG-GADYSFECIGD-TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 251 ~~~~g-g~dvVid~~g~-~~~l~~~~~~l~~~~G~~v~~g 288 (371)
..... .+|.|+--... ...++.+.++|+++ |+++.+.
T Consensus 166 ~~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~ 204 (266)
T d1o54a_ 166 EGFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVC 204 (266)
T ss_dssp GCCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEe
Confidence 12223 68877665554 34689999999998 9998764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=96.78 E-value=0.0051 Score=51.65 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=53.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh-hhHHHH-----HHcCCceE---eCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP-EKCEKA-----KAFGVTEF---LNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~-~~~~~~-----~~lg~~~v---i~~~~~~~~~~~~v~~~~~- 254 (371)
+|+++||+|+ +++|++.+..+...|+ +|+.+.+++ ++.+.+ .+.|.... .|..+ .++..+.+.+...
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 5889999986 8999999999999999 999999874 444332 23454322 25542 2333343433332
Q ss_pred -CCccEEEEcCCC
Q 017460 255 -GGADYSFECIGD 266 (371)
Q Consensus 255 -gg~dvVid~~g~ 266 (371)
|++|++|++.|.
T Consensus 81 ~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 81 MGRIDILVNNAGI 93 (260)
T ss_dssp HSCCSEEEECCCC
T ss_pred hCCCcEEEeeccc
Confidence 479999999875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.0017 Score=53.44 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=65.2
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHH----HcCCc-------eEeCCCCCCchHHHHH
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAK----AFGVT-------EFLNPNDNNEPVQQVI 249 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~-------~vi~~~~~~~~~~~~v 249 (371)
..+++|++||-+|+|+ |..++.+|+..|. .+|+.++.+++-.+.++ +.+.. .+... + ..
T Consensus 72 ~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g---D-----~~ 142 (224)
T d1i1na_ 72 DQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG---D-----GR 142 (224)
T ss_dssp TTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES---C-----GG
T ss_pred hccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe---e-----cc
Confidence 3789999999999874 7778888887763 38999999998766653 22321 11111 0 00
Q ss_pred HHHhC-CCccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 250 KRITD-GGADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 250 ~~~~~-gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
..... +.||.|+-+.......+..++.|+++ |+++..
T Consensus 143 ~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p 180 (224)
T d1i1na_ 143 MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP 180 (224)
T ss_dssp GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred cccchhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence 11112 37999988776655567788999998 999873
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.0028 Score=53.09 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=68.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc----C-Cce---EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF----G-VTE---FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l----g-~~~---vi~~~~~~~~~~~~v~~~~~- 254 (371)
.|+++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+ .++ + ... ..|..+ .+++.+.+.....
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC-HHHHHHHHHHHHHH
Confidence 4789999986 8999999999999999 999999999887655 222 1 111 235542 3334444444333
Q ss_pred -CCccEEEEcCCCh-----------------HHHHHHHHHhcc-----CCceEEEecCCCC
Q 017460 255 -GGADYSFECIGDT-----------------GMITTALQSCCD-----GWGLAVTLGVPKL 292 (371)
Q Consensus 255 -gg~dvVid~~g~~-----------------~~l~~~~~~l~~-----~~G~~v~~g~~~~ 292 (371)
|++|+++++.|.. .....++..+.+ + |+++.+++...
T Consensus 80 ~G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~-g~Iv~isS~~~ 139 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEG-GIIINMSSLAG 139 (254)
T ss_dssp HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCGGG
T ss_pred cCCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCC-cEEEeeccHhh
Confidence 3799999998852 112344444432 3 78999876543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.00032 Score=58.80 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=67.9
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~ 250 (371)
+....++++|++||=+|+|. |..+..+++..|+ +|+.++.++...+.+++ .|.. .++... ..+
T Consensus 25 l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d--~~~------ 94 (245)
T d1nkva_ 25 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND--AAG------ 94 (245)
T ss_dssp HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC--CTT------
T ss_pred HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhH--Hhh------
Confidence 45778999999999999764 4556778888898 99999999988776644 4542 122111 111
Q ss_pred HHhCCCccEEEEcCC------ChHHHHHHHHHhccCCceEEEe
Q 017460 251 RITDGGADYSFECIG------DTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 251 ~~~~gg~dvVid~~g------~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
....+.||+|+-.-. -...+++..+.|+++ |+++..
T Consensus 95 ~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~ 136 (245)
T d1nkva_ 95 YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIG 136 (245)
T ss_dssp CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEE
T ss_pred ccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEE
Confidence 012238999875321 234678888899998 998775
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00094 Score=54.09 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=62.9
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.++|+|+|+ |.+|...+..+...|. +|.++.|++++.......+++.+. |.. + .+.+.+... ++|+||.++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~~~gD~~--d---~~~l~~al~-~~d~vi~~~ 75 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVL--Q---AADVDKTVA-GQDAVIVLL 75 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTT--S---HHHHHHHHT-TCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccccccccccccccccc--c---hhhHHHHhc-CCCEEEEEe
Confidence 468999996 9999999998888998 999999999886554445554333 443 2 223333333 689999998
Q ss_pred CChH----------HHHHHHHHhccC-CceEEEecC
Q 017460 265 GDTG----------MITTALQSCCDG-WGLAVTLGV 289 (371)
Q Consensus 265 g~~~----------~l~~~~~~l~~~-~G~~v~~g~ 289 (371)
|... .....++.++.. -.+++.+++
T Consensus 76 g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss 111 (205)
T d1hdoa_ 76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (205)
T ss_dssp CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence 7531 122344444442 146777754
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.71 E-value=0.0011 Score=56.58 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=68.1
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~ 250 (371)
+.++.++++|++||-+|+|- |..++.+|+..|+ +|++++.++++.+.+++ .|.. .+... ++ +
T Consensus 54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~-----d~----~ 122 (285)
T d1kpga_ 54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-----GW----E 122 (285)
T ss_dssp HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-----CG----G
T ss_pred HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHh-----hh----h
Confidence 45788999999999999874 6778889999999 99999999998887744 3321 12211 11 1
Q ss_pred HHhCCCccEEEE-----cCCCh---HHHHHHHHHhccCCceEEEe
Q 017460 251 RITDGGADYSFE-----CIGDT---GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 251 ~~~~gg~dvVid-----~~g~~---~~l~~~~~~l~~~~G~~v~~ 287 (371)
...+.+|.|+. .++.. ..++.+.+.|+++ |+++.-
T Consensus 123 -~~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~ 165 (285)
T d1kpga_ 123 -QFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLH 165 (285)
T ss_dssp -GCCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEE
T ss_pred -cccccccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEE
Confidence 11247888765 33322 3477888899998 998764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.0027 Score=53.85 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=63.9
Q ss_pred CCEE-EEEcc-ChHHHHHHH-HHHHcCCCEEEEEcCChhhHHHH----HHcCCc-e--EeCCCCCCchHHHHHHHHhC--
Q 017460 187 GSTV-VIFGL-GTVGLSVAQ-GAKARGASRIIGVDTNPEKCEKA----KAFGVT-E--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 187 ~~~V-lI~Ga-g~~G~~ai~-la~~~G~~~vi~~~~~~~~~~~~----~~lg~~-~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
|.+| ||+|+ +++|++.+. |++.-|+ +|+.+++++++.+.+ ++.|.. . ..|..+ .+...+.+.+...
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~-~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCC-HHHHHHHHHHHHHhc
Confidence 6677 56686 899998765 5566688 999999999987654 333432 2 235542 2233322233222
Q ss_pred CCccEEEEcCCCh-------------------------HHHHHHHHHhccCCceEEEecCC
Q 017460 255 GGADYSFECIGDT-------------------------GMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 255 gg~dvVid~~g~~-------------------------~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+++|++|++.|-. ...+.++..|++. |+++.+++.
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS~ 139 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSSI 139 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCH
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccccc
Confidence 3799999988741 1234445566776 999988753
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.70 E-value=0.0037 Score=52.45 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=54.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--CC
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
|+.+||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ ++.|... ..|..+ .++..+.+.+... |+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence 566789986 8999999999999999 999999998876654 4556532 235542 3334444444332 37
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|+++++.|.
T Consensus 80 iDilVnnAG~ 89 (257)
T d2rhca1 80 VDVLVNNAGR 89 (257)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEecccc
Confidence 9999999875
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.65 E-value=0.0059 Score=51.20 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=69.7
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH----cC---CceE-eCCCCCCchHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FG---VTEF-LNPNDNNEPVQQV 248 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg---~~~v-i~~~~~~~~~~~~ 248 (371)
+...++++||++||=.|+|+ |.+++.+|+..|. .+|+.++.+++..+.+++ ++ .+.+ +... +..+
T Consensus 88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~----d~~~- 161 (264)
T d1i9ga_ 88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS----DLAD- 161 (264)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS----CGGG-
T ss_pred HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec----cccc-
Confidence 34678999999999998874 7778888888864 399999999998888754 21 1211 1111 1100
Q ss_pred HHHHhCCCccEEE-EcCCChHHHHHHHHHhccCCceEEEec
Q 017460 249 IKRITDGGADYSF-ECIGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 249 v~~~~~gg~dvVi-d~~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
..+.++.||.|| |...-...++.+.+.|+++ |+++.+-
T Consensus 162 -~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~ 200 (264)
T d1i9ga_ 162 -SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYV 200 (264)
T ss_dssp -CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred -ccccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEe
Confidence 011123789765 4444445788999999998 9998774
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=96.63 E-value=0.0021 Score=54.13 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=55.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-----HHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-----KAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-----~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+ ++.|... ..|..+ .++..+.+.+...
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDADL 85 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 4789999986 8999999999999999 999999988765433 4456532 235542 3334444443332
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
|++|+++++.|.
T Consensus 86 g~iDilVnnAg~ 97 (260)
T d1h5qa_ 86 GPISGLIANAGV 97 (260)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCcEecccccc
Confidence 379999998874
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=96.62 E-value=0.0042 Score=51.80 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=55.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh--HHHHHHcCCce---EeCCCCCCchHHHHHHHHhC--CCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFGVTE---FLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++ .+.++++|... ..|..+ .++....+.+... |++
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~G~i 81 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGRC 81 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcCCC
Confidence 4789999986 8999999999999999 99999887643 33456777542 235542 3333344333332 379
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+++++.|.
T Consensus 82 DilVnnAG~ 90 (247)
T d2ew8a1 82 DILVNNAGI 90 (247)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999998875
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.61 E-value=0.0023 Score=53.52 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=55.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC--c-e--EeCCCCCCchHHHHHHHHhC--CC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV--T-E--FLNPNDNNEPVQQVIKRITD--GG 256 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~--~-~--vi~~~~~~~~~~~~v~~~~~--gg 256 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+ ++++. . . ..|..+ .+...+.+.+... |+
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC-HHHHHHHHHHHHHHhCC
Confidence 5889999985 8999999999999999 999999999887766 33432 1 2 235541 2233333333322 48
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|+++++.|.
T Consensus 83 iDiLVnnAg~ 92 (251)
T d1zk4a1 83 VSTLVNNAGI 92 (251)
T ss_dssp CCEEEECCCC
T ss_pred ceEEEecccc
Confidence 9999998875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.61 E-value=0.0029 Score=53.65 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc------eEeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT------EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~------~vi~~~~~~~~~~~~v~~~~~ 254 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ ++.+.. ...|..+ .++....+.....
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK 81 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC-HHHHHHHHHHHHH
Confidence 4788999986 8999999999999999 999999999887665 333321 1235542 2333333433332
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
|++|+++++.|.
T Consensus 82 ~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGA 95 (272)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCceEEEeCCcc
Confidence 379999998764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=96.60 E-value=0.004 Score=53.31 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=54.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-----HHcCCce-E--eCCCCCCchHHHHHHHHh--C
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-----KAFGVTE-F--LNPNDNNEPVQQVIKRIT--D 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-----~~lg~~~-v--i~~~~~~~~~~~~v~~~~--~ 254 (371)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+ .+.|... . .|..+ .+.....+.... .
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIKVA 101 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC-hHHHHHHhhhhhhhc
Confidence 4799999985 9999999999999999 999999998876543 3344432 2 24441 223333333332 2
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|+++++.|.
T Consensus 102 g~iDilvnnAg~ 113 (294)
T d1w6ua_ 102 GHPNIVINNAAG 113 (294)
T ss_dssp CSCSEEEECCCC
T ss_pred cccchhhhhhhh
Confidence 389999999875
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=96.60 E-value=0.0032 Score=53.03 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh-hHH----HHHHcCCce---EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-KCE----KAKAFGVTE---FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~-~~~----~~~~lg~~~---vi~~~~~~~~~~~~v~~~~~-- 254 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+.++.+ +.+ .+++.|... ..|..+ .++..+.+.+...
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 4789999985 8999999998889999 9999988754 333 345666543 235542 2333333333322
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
|++|+++++.|.
T Consensus 84 G~iDiLVnnAG~ 95 (261)
T d1geea_ 84 GKLDVMINNAGL 95 (261)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEeecccee
Confidence 379999998875
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=96.59 E-value=0.0012 Score=55.42 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=51.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCce----EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE----FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~----vi~~~~~~~~~~~~v~~~~~-- 254 (371)
+|++|||+|+ +++|.+.+..+...|+ +|+++.++.++.+.+.+ .+-.. ..|...+...+.+.+.+...
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 82 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence 4899999985 8999999998889999 77777676665544432 22211 22432112234343443332
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|+++.+.|.
T Consensus 83 g~iDilvnnAG~ 94 (254)
T d1sbya1 83 KTVDILINGAGI 94 (254)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEeCCCC
Confidence 379999999985
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.59 E-value=0.0032 Score=53.39 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=55.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc------eEeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT------EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~------~vi~~~~~~~~~~~~v~~~~~ 254 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++.|.. ...|..+ ..+..+.+.+...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA 80 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC-HHHHHHHHHHHHH
Confidence 4889999986 8999999999999999 999999999887654 344431 1235542 2333333443332
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
|++|+++++.|.
T Consensus 81 ~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 81 KFGKIDILVNNAGA 94 (274)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCceEEEeeccc
Confidence 379999998773
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=96.57 E-value=0.0015 Score=54.76 Aligned_cols=95 Identities=24% Similarity=0.396 Sum_probs=63.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHhCCCc
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
..++|++||=+|+|. |.+++.+++ +|+ +|++++.+++-.+.+++ .|.. .++.. +..+ ....+.|
T Consensus 117 ~~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~-----d~~~---~~~~~~f 185 (254)
T d2nxca1 117 HLRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEG-----SLEA---ALPFGPF 185 (254)
T ss_dssp HCCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEES-----CHHH---HGGGCCE
T ss_pred hcCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEEec-----cccc---ccccccc
Confidence 367899999999874 666665554 688 89999999998777753 4543 22322 2222 1233489
Q ss_pred cEEEEcCCCh---HHHHHHHHHhccCCceEEEecC
Q 017460 258 DYSFECIGDT---GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 258 dvVid~~g~~---~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
|+|+...... ..++...+.|+++ |+++..|.
T Consensus 186 D~V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgi 219 (254)
T d2nxca1 186 DLLVANLYAELHAALAPRYREALVPG-GRALLTGI 219 (254)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred chhhhccccccHHHHHHHHHHhcCCC-cEEEEEec
Confidence 9998765432 2356677889997 99987543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.55 E-value=0.0016 Score=55.51 Aligned_cols=100 Identities=11% Similarity=0.134 Sum_probs=67.1
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHh
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~ 253 (371)
+.+..++++|++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++ .|....+... ..++ + ..
T Consensus 44 ~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~--~~d~----~-~~ 114 (280)
T d2fk8a1 44 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVL--LQGW----E-DF 114 (280)
T ss_dssp HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEE--ESCG----G-GC
T ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhh--hhhh----h-hh
Confidence 45788999999999999874 3456778888899 99999999998877644 4432111000 0011 1 12
Q ss_pred CCCccEEEE-----cCCCh---HHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSFE-----CIGDT---GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVid-----~~g~~---~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.||.|+. .++.. ..++...+.|+|+ |+++.-
T Consensus 115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~ 155 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQ 155 (280)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEE
T ss_pred ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEE
Confidence 347888854 33322 3477888999998 998764
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0011 Score=57.67 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=66.7
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH----cC-----------CceE--eCCCC
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FG-----------VTEF--LNPND 240 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg-----------~~~v--i~~~~ 240 (371)
....++++|++||=.|+|+ |.+++.+|+..|. .+|+.++.+++..+.+++ ++ .+.+ ...+
T Consensus 91 l~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d- 168 (324)
T d2b25a1 91 LSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD- 168 (324)
T ss_dssp HHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC-
T ss_pred HHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc-
Confidence 4678999999999999875 8888899998874 389999999998877743 11 1111 1110
Q ss_pred CCchHHHHHHHHhCCCccEEE-EcCCChHHHHHHHHHhccCCceEEEec
Q 017460 241 NNEPVQQVIKRITDGGADYSF-ECIGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 241 ~~~~~~~~v~~~~~gg~dvVi-d~~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
-.++ ...+..+.+|.|| |...-...++.+.+.|++| |+++.+-
T Consensus 169 -i~~~---~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~ 212 (324)
T d2b25a1 169 -ISGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYV 212 (324)
T ss_dssp -TTCC---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEE
T ss_pred -hhhc---ccccCCCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEe
Confidence 0111 0111122678765 4433334789999999998 9998774
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.51 E-value=0.009 Score=49.19 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++. ++.+...+ .|.+ ... +.+.+.. +.+|+++++
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l---~~~~~~~~~~Dv~---~~~-~~~~~~~-g~iD~lVnn 73 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRYVVCDLR---KDL-DLLFEKV-KEVDILVLN 73 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEEEECCTT---TCH-HHHHHHS-CCCSEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH---HhcCCcEEEcchH---HHH-HHHHHHh-CCCcEEEec
Confidence 4789999985 8999999999999999 999999987654 45555433 3443 223 3333322 479999998
Q ss_pred CCC
Q 017460 264 IGD 266 (371)
Q Consensus 264 ~g~ 266 (371)
.|.
T Consensus 74 AG~ 76 (234)
T d1o5ia_ 74 AGG 76 (234)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.49 E-value=0.0057 Score=51.26 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=54.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHc--CCce---EeCCCCCCchHHHHHHHHhC-
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAF--GVTE---FLNPNDNNEPVQQVIKRITD- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~l--g~~~---vi~~~~~~~~~~~~v~~~~~- 254 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ .+. +... ..|..+ .++..+.+.+...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC-HHHHHHHHHHHHHH
Confidence 4789999986 8999999999999999 999999999887654 222 2221 235542 3334443433332
Q ss_pred -CCccEEEEcCC
Q 017460 255 -GGADYSFECIG 265 (371)
Q Consensus 255 -gg~dvVid~~g 265 (371)
|++|+++++.|
T Consensus 81 ~G~iDiLVnnAG 92 (258)
T d1iy8a_ 81 FGRIDGFFNNAG 92 (258)
T ss_dssp HSCCSEEEECCC
T ss_pred hCCCCEEEECCc
Confidence 37999999887
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.0021 Score=44.83 Aligned_cols=36 Identities=42% Similarity=0.487 Sum_probs=32.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
+|++|+|+|.|..|+++++++...|+ +|++.+.++.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcC
Confidence 47889999999999999999999999 9999987553
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.0064 Score=52.11 Aligned_cols=81 Identities=16% Similarity=0.278 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHc--------CCce---EeCCCCCCchHHHHHH
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAF--------GVTE---FLNPNDNNEPVQQVIK 250 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~l--------g~~~---vi~~~~~~~~~~~~v~ 250 (371)
.-+|+++||+|+ +++|.+.++.+...|+ +|++++++.++.+.+ +++ +... ..|..+ .++..+.+.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~ 86 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVK 86 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC-HHHHHHHHH
Confidence 446899999986 8999999999999999 999999998876554 222 2221 235442 333444444
Q ss_pred HHhC--CCccEEEEcCCC
Q 017460 251 RITD--GGADYSFECIGD 266 (371)
Q Consensus 251 ~~~~--gg~dvVid~~g~ 266 (371)
+... |++|+++++.|.
T Consensus 87 ~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 87 STLDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHhCCeEEEEeeccc
Confidence 4332 379999998875
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.47 E-value=0.0051 Score=47.07 Aligned_cols=93 Identities=23% Similarity=0.380 Sum_probs=69.1
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+-.|++++|.|-|-+|.-.++-++.+|+ +|++++.+|-+.-.+.--|.. +.. ..+.+ ...|+++-+
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf~-v~~-------~~~a~-----~~aDi~vTa 85 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-VVT-------LDEIV-----DKGDFFITC 85 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-ECC-------HHHHT-----TTCSEEEEC
T ss_pred eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCCc-cCc-------hhHcc-----ccCcEEEEc
Confidence 4679999999999999999999999999 999999999765444333332 321 22221 257999999
Q ss_pred CCChHH-HHHHHHHhccCCceEEEecCCC
Q 017460 264 IGDTGM-ITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 264 ~g~~~~-l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+|..+. -.+.++.++.+ ..+...|...
T Consensus 86 TGn~~vI~~~h~~~MKdg-aIl~N~GHfd 113 (163)
T d1v8ba1 86 TGNVDVIKLEHLLKMKNN-AVVGNIGHFD 113 (163)
T ss_dssp CSSSSSBCHHHHTTCCTT-CEEEECSSTT
T ss_pred CCCCccccHHHHHHhhCC-eEEEeccccc
Confidence 998654 45778899986 6776776553
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.46 E-value=0.0031 Score=52.68 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=54.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCC-EEEEEcCChhhHHHHHHcCCc--e--EeCCCCCCch---HHHHHHHHhCC-C
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGVT--E--FLNPNDNNEP---VQQVIKRITDG-G 256 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~--~--vi~~~~~~~~---~~~~v~~~~~g-g 256 (371)
.++|||+|+ +++|++.++.+...|+. +|+.+.++.++.+.+++.... . .+|..+ .+. +.+.+.+..+. +
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~~~~ 81 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGSDG 81 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGGGC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCC-HHHHHHHHHHHHHHhCCCC
Confidence 478999986 89999988887778863 788889999998888764322 2 235542 222 33344444444 7
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|+++.+.|.
T Consensus 82 idilinnAG~ 91 (250)
T d1yo6a1 82 LSLLINNAGV 91 (250)
T ss_dssp CCEEEECCCC
T ss_pred eEEEEEcCcc
Confidence 9999999884
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.44 E-value=0.0022 Score=53.67 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=50.1
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC----CceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG----VTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg----~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
++||+|+ +++|++.+..+...|+ +|+..+++.++.+.+++++ ...+.+..+ ...+.+++.+.. |++|+++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~-~~~~~~~~~~~~-G~iDiLVnN 78 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE-PAELIEAVTSAY-GQVDVLVSN 78 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS-HHHHHHHHHHHH-SCCCEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH-HHHHHHHHHHHc-CCCCEEEEC
Confidence 6889986 8999999998888999 9999999888877765433 222333321 122333333333 379999987
Q ss_pred CC
Q 017460 264 IG 265 (371)
Q Consensus 264 ~g 265 (371)
.|
T Consensus 79 Ag 80 (252)
T d1zmta1 79 DI 80 (252)
T ss_dssp CC
T ss_pred Cc
Confidence 65
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=96.42 E-value=0.0033 Score=51.91 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+.++.+||=+|+| .|..+..+++ .|+ +|++++.++...+.+++.+....+... ..++ .+.++.+|+|+..
T Consensus 40 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~--~~~l-----~~~~~~fD~ii~~ 109 (246)
T d2avna1 40 LKNPCRVLDLGGG-TGKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAK--AEDL-----PFPSGAFEAVLAL 109 (246)
T ss_dssp CCSCCEEEEETCT-TCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECC--TTSC-----CSCTTCEEEEEEC
T ss_pred cCCCCEEEEECCC-Cchhcccccc-cce-EEEEeeccccccccccccccccccccc--cccc-----ccccccccceeee
Confidence 5678899999988 5888888876 588 999999999999999887766555332 1111 1223489998864
Q ss_pred CC------C-hHHHHHHHHHhccCCceEEEe
Q 017460 264 IG------D-TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 264 ~g------~-~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.. + ...++...+.|++| |.++..
T Consensus 110 ~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~ 139 (246)
T d2avna1 110 GDVLSYVENKDKAFSEIRRVLVPD-GLLIAT 139 (246)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence 33 1 23477888899997 987653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=96.41 E-value=0.006 Score=48.33 Aligned_cols=96 Identities=8% Similarity=0.052 Sum_probs=64.0
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC-c-----------------eEe--CCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-T-----------------EFL--NPN 239 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~-----------------~vi--~~~ 239 (371)
....+.+|.+||..|+|. |..++.+|+ .|+ +|++++.+++..+.+++..- . ..+ +..
T Consensus 14 ~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 90 (201)
T d1pjza_ 14 SSLNVVPGARVLVPLCGK-SQDMSWLSG-QGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 90 (201)
T ss_dssp HHHCCCTTCEEEETTTCC-SHHHHHHHH-HCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred HHcCCCCCCEEEEecCcC-CHHHHHHHH-cCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence 445788999999999874 677888886 499 99999999999998866321 0 011 111
Q ss_pred CCCchHHHHHHHHhCCCccEEEEcCCC--------hHHHHHHHHHhccCCceEEEe
Q 017460 240 DNNEPVQQVIKRITDGGADYSFECIGD--------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 240 ~~~~~~~~~v~~~~~gg~dvVid~~g~--------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+... ....+|+|++...- ...++...+.|+++ |+++..
T Consensus 91 ----~l~~~----~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~ 137 (201)
T d1pjza_ 91 ----ALTAR----DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLI 137 (201)
T ss_dssp ----SSTHH----HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEE
T ss_pred ----ccccc----cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEE
Confidence 10000 11268999885432 13467788889997 987654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.40 E-value=0.0071 Score=50.57 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=52.7
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--CCcc
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGAD 258 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~d 258 (371)
.+||+|+ +++|++.+..+...|+ +|+.+++++++.+.+ ++.|... ..|..+ .++..+.+.+... |++|
T Consensus 3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTCCC
T ss_pred EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHhCCcc
Confidence 4588886 8999999888888999 999999999887654 4455432 235542 3333334444332 3799
Q ss_pred EEEEcCCC
Q 017460 259 YSFECIGD 266 (371)
Q Consensus 259 vVid~~g~ 266 (371)
+++++.|.
T Consensus 81 ilVnnAG~ 88 (255)
T d1gega_ 81 VIVNNAGV 88 (255)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 99998874
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.37 E-value=0.005 Score=51.83 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=54.5
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc----e--EeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT----E--FLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~----~--vi~~~~~~~~~~~~v~~~~~ 254 (371)
+|+.+||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ ++.|.. . ..|..+ ..+..+.+.+...
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG 81 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC-HHHHHHHHHHHHH
Confidence 5788999986 8999999999999999 999999999887654 334321 1 235542 2333333433332
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
|++|+++++.|.
T Consensus 82 ~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 82 KFGKLDILVNNAGA 95 (264)
T ss_dssp HHSCCCEEEECCC-
T ss_pred HhCCCCEeeccccc
Confidence 479999998873
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.36 E-value=0.00079 Score=55.93 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=61.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC----chHHHHHHHHhCC-CccEE
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN----EPVQQVIKRITDG-GADYS 260 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~----~~~~~~v~~~~~g-g~dvV 260 (371)
+.+|||+|+ +++|.+.++.+...|+ +|+.+++++++.. .....+...... ....+.+...... .+|++
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l 75 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV 75 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhcc-----cccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence 457899986 8999999999999999 9999988765421 111112111001 1112222333333 79999
Q ss_pred EEcCCCh--------------------------HHHHHHHHHhccCCceEEEecCCC
Q 017460 261 FECIGDT--------------------------GMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 261 id~~g~~--------------------------~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
|++.|.. ...+..+..++++ |+++.+++..
T Consensus 76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~~ 131 (235)
T d1ooea_ 76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAAA 131 (235)
T ss_dssp EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccHH
Confidence 9988741 1234455567786 9999987643
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=96.35 E-value=0.016 Score=47.88 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=62.8
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC--CCc
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD--GGA 257 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~--gg~ 257 (371)
.|||+|+ +++|++.++.+...|+ +|+.. .+++++.+.+ ++.|... ..|..+ .++..+.+.+... |++
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSSCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4677785 8999999999999999 88776 4566555443 4456532 235542 2333333333322 489
Q ss_pred cEEEEcCCCh-------------------------HHHHHHHHHh--ccCCceEEEecCCC
Q 017460 258 DYSFECIGDT-------------------------GMITTALQSC--CDGWGLAVTLGVPK 291 (371)
Q Consensus 258 dvVid~~g~~-------------------------~~l~~~~~~l--~~~~G~~v~~g~~~ 291 (371)
|+++++.|.. ...+.++..+ +.+ |++|.+++..
T Consensus 81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~ 140 (244)
T d1edoa_ 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVV 140 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTH
T ss_pred CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcChh
Confidence 9999988752 1234445544 344 9999998643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00084 Score=55.53 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=64.6
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc---eEeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT---EFLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~---~vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
..+|.+||-+|+|. |..+..+++..+. +|++++.++...+.+++.... .+... ..+.......+.++.||.|
T Consensus 51 ~~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~fD~i 125 (229)
T d1zx0a1 51 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPL---KGLWEDVAPTLPDGHFDGI 125 (229)
T ss_dssp TTTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEE---ESCHHHHGGGSCTTCEEEE
T ss_pred ccCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhcccccccc---cccccccccccccccccce
Confidence 36789999999864 6777888887666 899999999999888764321 11111 1123333333444589887
Q ss_pred -EEcCCCh----------HHHHHHHHHhccCCceEEEe
Q 017460 261 -FECIGDT----------GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 261 -id~~g~~----------~~l~~~~~~l~~~~G~~v~~ 287 (371)
+|.+... ..++.+.+.|++| |+++..
T Consensus 126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~ 162 (229)
T d1zx0a1 126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC 162 (229)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred eecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence 4655331 2456678899998 998764
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.33 E-value=0.041 Score=42.07 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=63.0
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
+|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+++.++.. .+ +..+.++ ..|+||-|+.++.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~-~~------~~~e~~~-----~~d~ii~~v~~~~ 68 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET-AS------TAKAIAE-----QCDVIITMLPNSP 68 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-CS------SHHHHHH-----HCSEEEECCSSHH
T ss_pred EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhh-cc------cHHHHHh-----CCCeEEEEcCCHH
Confidence 57899999999998888878899 9999999999999999888742 22 1222222 4799999998766
Q ss_pred HHHHHH-------HHhccCCceEEEecCC
Q 017460 269 MITTAL-------QSCCDGWGLAVTLGVP 290 (371)
Q Consensus 269 ~l~~~~-------~~l~~~~G~~v~~g~~ 290 (371)
.++..+ ..++++ -.++.++..
T Consensus 69 ~v~~v~~~~~~~~~~~~~g-~iiid~sT~ 96 (161)
T d1vpda2 69 HVKEVALGENGIIEGAKPG-TVLIDMSSI 96 (161)
T ss_dssp HHHHHHHSTTCHHHHCCTT-CEEEECSCC
T ss_pred HHHHHHhCCcchhhccCCC-CEEEECCCC
Confidence 555433 344554 555666543
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.32 E-value=0.0031 Score=51.70 Aligned_cols=98 Identities=17% Similarity=0.300 Sum_probs=60.0
Q ss_pred cCCCCCCEEEEEccCh--HHHHHHHHHHHcCC---CEEEEEcCChhhHHHHHH---------cCCce--EeCCCCCCchH
Q 017460 182 ADISKGSTVVIFGLGT--VGLSVAQGAKARGA---SRIIGVDTNPEKCEKAKA---------FGVTE--FLNPNDNNEPV 245 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~--~G~~ai~la~~~G~---~~vi~~~~~~~~~~~~~~---------lg~~~--vi~~~~~~~~~ 245 (371)
..+++|++||.+|+|+ ....+.+++...|+ .+|+.++.+++-.+.+++ ++... ++..+ .
T Consensus 76 ~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d-----~ 150 (223)
T d1r18a_ 76 DHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD-----G 150 (223)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC-----G
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecc-----c
Confidence 3789999999998753 33334444455453 279999999876655532 12211 22111 0
Q ss_pred HHHHHHHh-CCCccEEEEcCCChHHHHHHHHHhccCCceEEE-ec
Q 017460 246 QQVIKRIT-DGGADYSFECIGDTGMITTALQSCCDGWGLAVT-LG 288 (371)
Q Consensus 246 ~~~v~~~~-~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~-~g 288 (371)
..... .+.||.|+-+.+-+..-+..++.|+++ |+++. ++
T Consensus 151 ---~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~pvg 191 (223)
T d1r18a_ 151 ---RKGYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPVG 191 (223)
T ss_dssp ---GGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred ---ccccccccceeeEEEEeechhchHHHHHhcCCC-cEEEEEEe
Confidence 01111 237999887766554556778899998 99976 54
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.27 E-value=0.019 Score=45.30 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=63.7
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc-e--EeCCCCCCchHHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT-E--FLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~--vi~~~~~~~~~~~~v~~~ 252 (371)
...++++|++||=+|+|. |..++.+|+. +. +|++++.+++..+.++ ++|.. . ++.. +..+. .
T Consensus 27 ~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g-----da~~~---~ 95 (186)
T d1l3ia_ 27 CLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-----DAPEA---L 95 (186)
T ss_dssp HHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-----CHHHH---H
T ss_pred HhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC-----chhhc---c
Confidence 456889999999998753 4445556654 45 9999999999877774 45642 2 2322 22222 2
Q ss_pred hCC-CccEEEEcCCC---hHHHHHHHHHhccCCceEEEec
Q 017460 253 TDG-GADYSFECIGD---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 253 ~~g-g~dvVid~~g~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
... .+|.|+-.... ...++.+.+.|+++ |+++...
T Consensus 96 ~~~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~ 134 (186)
T d1l3ia_ 96 CKIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA 134 (186)
T ss_dssp TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred cccCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEe
Confidence 333 89998865443 23577788889997 9987653
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.24 E-value=0.027 Score=43.48 Aligned_cols=92 Identities=24% Similarity=0.301 Sum_probs=64.5
Q ss_pred EEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcCC-ceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGV-TEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~-~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|+|+|.|.+|...+..++..|. .+|++++++++.++.+++++. +...... .. ......|+|+-|+..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~---~~-------~~~~~~dlIila~p~ 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI---AK-------VEDFSPDFVMLSSPV 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCG---GG-------GGGTCCSEEEECSCH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhh---hh-------hhccccccccccCCc
Confidence 69999999999998888888874 389999999999999999886 3333221 00 111267999998875
Q ss_pred hH---HHHHHHHHhccCCceEEEecCCC
Q 017460 267 TG---MITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 267 ~~---~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
.. .++.....+.++ -.++.+++..
T Consensus 73 ~~~~~vl~~l~~~~~~~-~ii~d~~s~k 99 (171)
T d2g5ca2 73 RTFREIAKKLSYILSED-ATVTDQGSVK 99 (171)
T ss_dssp HHHHHHHHHHHHHSCTT-CEEEECCSCC
T ss_pred hhhhhhhhhhhcccccc-cccccccccc
Confidence 43 244445556664 6666676543
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=96.22 E-value=0.017 Score=48.15 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=53.8
Q ss_pred CCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh-------HHHHHHcCCce---EeCCCCCCchHHHHH-H
Q 017460 183 DISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK-------CEKAKAFGVTE---FLNPNDNNEPVQQVI-K 250 (371)
Q Consensus 183 ~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~-------~~~~~~lg~~~---vi~~~~~~~~~~~~v-~ 250 (371)
.++|+.++||+|+ +++|++.+..+...|+++|+.+.|+..+ .+.+++.|... ..|.. +.+-.+.+ .
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~--d~~~~~~~~~ 82 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVT--DRESVRELLG 82 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTT--CHHHHHHHHH
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccc--hHHHHHHhhc
Confidence 4788999999985 9999999988888898667777665322 22345567642 23554 33333333 3
Q ss_pred HHhCC-CccEEEEcCCC
Q 017460 251 RITDG-GADYSFECIGD 266 (371)
Q Consensus 251 ~~~~g-g~dvVid~~g~ 266 (371)
..... ++|.++.+.|.
T Consensus 83 ~i~~~~~i~~vv~~ag~ 99 (259)
T d2fr1a1 83 GIGDDVPLSAVFHAAAT 99 (259)
T ss_dssp TSCTTSCEEEEEECCCC
T ss_pred ccccccccccccccccc
Confidence 33333 78999998874
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.20 E-value=0.027 Score=42.68 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=56.4
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
+|.++|+|.+|.+.+.-+...|..++++.++++++++.+. ++|+...-+.. . + ...|+||=++. +
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~----~----v-----~~~Div~lavk-P 67 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLP----E----L-----HSDDVLILAVK-P 67 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCC----C----C-----CTTSEEEECSC-H
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccc----c----c-----cccceEEEecC-H
Confidence 5889999999998777443345339999999999988875 46764332221 1 0 14799998886 4
Q ss_pred HHHHHHHHHhccCCceEE
Q 017460 268 GMITTALQSCCDGWGLAV 285 (371)
Q Consensus 268 ~~l~~~~~~l~~~~G~~v 285 (371)
..+...++-+++. +.++
T Consensus 68 ~~~~~v~~~l~~~-~~~v 84 (152)
T d1yqga2 68 QDMEAACKNIRTN-GALV 84 (152)
T ss_dssp HHHHHHHTTCCCT-TCEE
T ss_pred HHHHHhHHHHhhc-ccEE
Confidence 5677777777764 5544
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.19 E-value=0.01 Score=47.47 Aligned_cols=81 Identities=28% Similarity=0.338 Sum_probs=61.2
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
-.|.+|+|.|.|.+|..+++++...|+ +|++.+.+.++......+|... ++.. ++..-.+|+.+=|.
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~-~~~~-----------~~~~~~~DI~iPcA 91 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA-VALE-----------DVLSTPCDVFAPCA 91 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-CCGG-----------GGGGCCCSEEEECS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhcccc-cCcc-----------ccccccceeeeccc
Confidence 368999999999999999999999999 9999999999999998888753 3221 12223789998777
Q ss_pred CChHHHHHHHHHhc
Q 017460 265 GDTGMITTALQSCC 278 (371)
Q Consensus 265 g~~~~l~~~~~~l~ 278 (371)
.....-....+.++
T Consensus 92 ~~~~I~~~~a~~i~ 105 (201)
T d1c1da1 92 MGGVITTEVARTLD 105 (201)
T ss_dssp CSCCBCHHHHHHCC
T ss_pred ccccccHHHHhhhh
Confidence 65433344555554
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=96.01 E-value=0.0055 Score=50.39 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=67.0
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCce--Ee--CCCCCCchHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FL--NPNDNNEPVQQVI 249 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vi--~~~~~~~~~~~~v 249 (371)
+.+.+.+++|++||=+|+|. |..+..+++. +. +|++++.++..++.+++ .+... ++ |.. +..
T Consensus 8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~--~~~----- 77 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE--SLP----- 77 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT--BCC-----
T ss_pred HHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhcccccccccccccccc--ccc-----
Confidence 45788999999999999874 6777777764 66 99999999987776643 44321 22 221 111
Q ss_pred HHHhCCCccEEEEcCCC------hHHHHHHHHHhccCCceEEEec
Q 017460 250 KRITDGGADYSFECIGD------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 250 ~~~~~gg~dvVid~~g~------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.++.||+|+..-.- ...++.+.+.|+++ |+++...
T Consensus 78 --~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~~ 119 (234)
T d1xxla_ 78 --FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLVD 119 (234)
T ss_dssp --SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred --ccccccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEEE
Confidence 123479999864332 23588899999997 9987753
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.90 E-value=0.025 Score=46.57 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=50.9
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCC------EEEEEcCChhhHHHH----HHcCCce---EeCCCCCCchHHHHHHHHhC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGAS------RIIGVDTNPEKCEKA----KAFGVTE---FLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~------~vi~~~~~~~~~~~~----~~lg~~~---vi~~~~~~~~~~~~v~~~~~ 254 (371)
.|||+|+ +++|++.+..+...|++ .|+...++.++++.+ ++.|... ..|..+ .++..+.+.+...
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHIVE 81 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHH
Confidence 3678886 89999988888888883 288888998887655 3345432 235542 2333333333322
Q ss_pred --CCccEEEEcCCC
Q 017460 255 --GGADYSFECIGD 266 (371)
Q Consensus 255 --gg~dvVid~~g~ 266 (371)
|.+|+++++.|.
T Consensus 82 ~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 82 RYGHIDCLVNNAGV 95 (240)
T ss_dssp HTSCCSEEEECCCC
T ss_pred HcCCcceeeccccc
Confidence 379999998875
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=95.85 E-value=0.011 Score=48.22 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=66.9
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCce--EeCCCCCCchHHHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTE--FLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~--vi~~~~~~~~~~~~v~~ 251 (371)
+.+.++++++++||-+|+| .|..+..+++. |+ +|++++.+++..+.+++ .+... ++..+ ..++ .
T Consensus 7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d--~~~l-----~ 76 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGD--AEQM-----P 76 (231)
T ss_dssp HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC--C-CC-----C
T ss_pred HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhhcccccccccccccccc--cccc-----c
Confidence 3477899999999999987 46666666654 67 99999999987776643 44432 22111 1111 1
Q ss_pred HhCCCccEEEEcCC-----Ch-HHHHHHHHHhccCCceEEEec
Q 017460 252 ITDGGADYSFECIG-----DT-GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 252 ~~~gg~dvVid~~g-----~~-~~l~~~~~~l~~~~G~~v~~g 288 (371)
+..+.||+|+-.-. +. ..+.++.+.|+++ |+++...
T Consensus 77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~ 118 (231)
T d1vl5a_ 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD 118 (231)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEe
Confidence 12347999986432 22 3588999999998 9988753
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=95.84 E-value=0.005 Score=52.29 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=67.7
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~ 251 (371)
.....++++.+||=+|+|. |..+..+++..|+ +|++++.++...+.+++ .|.. .++..+ ..++ .
T Consensus 60 ~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d--~~~l-----~ 130 (282)
T d2o57a1 60 AMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS--FLEI-----P 130 (282)
T ss_dssp HHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC--TTSC-----S
T ss_pred HHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccc--cccc-----c
Confidence 3567799999999999874 6677788888898 99999999988777644 3432 122111 1110 1
Q ss_pred HhCCCccEEEEcCC-----C-hHHHHHHHHHhccCCceEEEec
Q 017460 252 ITDGGADYSFECIG-----D-TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 252 ~~~gg~dvVid~~g-----~-~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+..+.||+|+-.-. + ...+..+.++|+++ |+++...
T Consensus 131 ~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~ 172 (282)
T d2o57a1 131 CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITD 172 (282)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEE
Confidence 12237999976322 1 23578899999998 9988754
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.82 E-value=0.022 Score=47.32 Aligned_cols=79 Identities=20% Similarity=0.397 Sum_probs=51.8
Q ss_pred CCCEEEEEcc-C--hHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceEe--CCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFL--NPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g--~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vi--~~~~~~~~~~~~v~~~~~-- 254 (371)
+|+++||+|+ | ++|.+.++.+...|+ +|+.+.++++..+.+ ...+....+ |..+ .++..+.+.....
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 84 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ-DEELDALFAGVKEAF 84 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCC-HHHHHHHHHHHHHhc
Confidence 5889999996 5 699999988888999 898888887655444 333433333 4431 2233333333222
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|+++++.+.
T Consensus 85 g~iDilVnnag~ 96 (256)
T d1ulua_ 85 GGLDYLVHAIAF 96 (256)
T ss_dssp SSEEEEEECCCC
T ss_pred CCceEEEecccc
Confidence 379999998864
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.82 E-value=0.0021 Score=53.31 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhC--CCccEEEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD--GGADYSFE 262 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~--gg~dvVid 262 (371)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. ....|..+ .++..+.+.+... +++|++++
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~----~~~~Dv~~-~~~v~~~~~~~~~~~g~iDiLVn 79 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF----GVEVDVTD-SDAVDRAFTAVEEHQGPVEVLVS 79 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE----EEECCTTC-HHHHHHHHHHHHHHHSSCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCce----EEEEecCC-HHHHHHHHHHHHHhcCCceEEEe
Confidence 5889999986 8999999999999999 9999999876543221 12334442 2333333333332 37999999
Q ss_pred cCCC
Q 017460 263 CIGD 266 (371)
Q Consensus 263 ~~g~ 266 (371)
+.|.
T Consensus 80 nAG~ 83 (237)
T d1uzma1 80 NAGL 83 (237)
T ss_dssp ECSC
T ss_pred eecc
Confidence 8875
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.77 E-value=0.052 Score=41.35 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=56.9
Q ss_pred CEEEEEccChHHH-HHHHHHHHcCCCEEEEE-cCChh--hHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEE
Q 017460 188 STVVIFGLGTVGL-SVAQGAKARGASRIIGV-DTNPE--KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 262 (371)
Q Consensus 188 ~~VlI~Gag~~G~-~ai~la~~~G~~~vi~~-~~~~~--~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid 262 (371)
-+|.|+|+|.+|. ..+++++.....+++++ +++.+ +.++++++|..... ...+.+.+...- ++|+||+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~-------~~~d~l~~~~~~~~iDiVf~ 77 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------AGVEGLIKLPEFADIDFVFD 77 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------SHHHHHHHSGGGGGEEEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc-------cceeeeeecccccccCEEEE
Confidence 4789999999986 56778776643266665 44443 45677888875322 122333333333 7999999
Q ss_pred cCCChHHHH--HHHHHhccCCceEEEecC
Q 017460 263 CIGDTGMIT--TALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 263 ~~g~~~~l~--~~~~~l~~~~G~~v~~g~ 289 (371)
++....+.. .+.+.+..| -.++....
T Consensus 78 ATpag~h~~~~~~~~aa~~G-~~VID~s~ 105 (157)
T d1nvmb1 78 ATSASAHVQNEALLRQAKPG-IRLIDLTP 105 (157)
T ss_dssp CSCHHHHHHHHHHHHHHCTT-CEEEECST
T ss_pred cCCchhHHHhHHHHHHHHcC-CEEEEccc
Confidence 987544444 334456653 44555543
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.66 E-value=0.1 Score=39.71 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=60.2
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
+|.++|.|.+|...+.-+...|+ .|.+.++++++.+.+.+.+....- +..+.+ ...|+++-|+....
T Consensus 3 kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~-------~~~e~~-----~~~diii~~v~~~~ 69 (162)
T d3cuma2 3 QIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASAAR-------SARDAV-----QGADVVISMLPASQ 69 (162)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEECS-------SHHHHH-----TSCSEEEECCSCHH
T ss_pred EEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhccccc-------hhhhhc-----cccCeeeecccchh
Confidence 68899999999988777777899 999999999999999888864221 122222 14788888887665
Q ss_pred HHHHHH-------HHhccCCceEEEecCC
Q 017460 269 MITTAL-------QSCCDGWGLAVTLGVP 290 (371)
Q Consensus 269 ~l~~~~-------~~l~~~~G~~v~~g~~ 290 (371)
..+..+ ..+.++ -.++.++..
T Consensus 70 ~~~~v~~~~~~~~~~l~~g-~iiid~st~ 97 (162)
T d3cuma2 70 HVEGLYLDDDGLLAHIAPG-TLVLECSTI 97 (162)
T ss_dssp HHHHHHHSTTCHHHHSCTT-CEEEECSCC
T ss_pred hHHHHHhccccccccCCCC-CEEEECCCC
Confidence 544432 235554 455555443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.64 E-value=0.033 Score=44.31 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=58.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...+++++.+|+ +|++.++........ .+.. ..++.+.++ ..|+|+-+..
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~~--~~~~--------~~~l~~~l~-----~sDii~~~~p 105 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELEK--KGYY--------VDSLDDLYK-----QADVISLHVP 105 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHH--TTCB--------CSCHHHHHH-----HCSEEEECSC
T ss_pred cCCeEEEecccccchhHHHhHhhhcc-cccccCccccccccc--ceee--------ecccccccc-----ccccccccCC
Confidence 47899999999999999999999999 999998765433222 1211 123444433 2688887765
Q ss_pred ChH----H-HHHHHHHhccCCceEEEec
Q 017460 266 DTG----M-ITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~----~-l~~~~~~l~~~~G~~v~~g 288 (371)
.+. . -...++.++++ ..+|..+
T Consensus 106 lt~~T~~li~~~~l~~mk~~-a~lIN~s 132 (197)
T d1j4aa1 106 DVPANVHMINDESIAKMKQD-VVIVNVS 132 (197)
T ss_dssp CCGGGTTCBSHHHHHHSCTT-EEEEECS
T ss_pred ccccccccccHHHHhhhCCc-cEEEecC
Confidence 322 1 25667888886 7777664
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.11 Score=44.76 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=68.0
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH-----------cCC----ceEeCCCCCC
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA-----------FGV----TEFLNPNDNN 242 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-----------lg~----~~vi~~~~~~ 242 (371)
+.+..+++++++||-+|+|. |..++++|+..|+.++++++.+++..+.+++ +|. -.++...-.+
T Consensus 143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~ 221 (328)
T d1nw3a_ 143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 221 (328)
T ss_dssp HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence 34778899999999999874 7788899999998789999999977665532 222 1233221113
Q ss_pred chHHHHHHHHhCCCccEEEEc-CC-Ch---HHHHHHHHHhccCCceEEEec
Q 017460 243 EPVQQVIKRITDGGADYSFEC-IG-DT---GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~-~g-~~---~~l~~~~~~l~~~~G~~v~~g 288 (371)
.++.+.+. .+|+|+-. .- .+ ..+.+.++.|++| |++|..-
T Consensus 222 ~~~~~~~~-----~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~ 266 (328)
T d1nw3a_ 222 EEWRERIA-----NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK 266 (328)
T ss_dssp HHHHHHHH-----HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred cccccccC-----cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence 33433332 25787742 11 11 2466777889998 9998764
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.46 E-value=0.052 Score=42.02 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=62.1
Q ss_pred EEEEEccChHHHHHHHHHHHcC-CCEEEEEc-C-ChhhHHHHHHcCCceEeCCCCCCchHHH-------HHHHHhCCCcc
Q 017460 189 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVD-T-NPEKCEKAKAFGVTEFLNPNDNNEPVQQ-------VIKRITDGGAD 258 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~-~-~~~~~~~~~~lg~~~vi~~~~~~~~~~~-------~v~~~~~gg~d 258 (371)
+|.|+|.|-+|...+..+.... . .++++. . .......+.+.+.+...........+.+ .+.++. .++|
T Consensus 4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vD 81 (172)
T d2czca2 4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL-EKVD 81 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH-TTCS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh-ccCC
Confidence 6889999999999888776553 5 566553 2 2344555666665433321100001100 011111 2799
Q ss_pred EEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 259 YSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 259 vVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+|+||+|.-...+.+-..+..| -+.|..+...
T Consensus 82 vViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~~ 113 (172)
T d2czca2 82 IIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEK 113 (172)
T ss_dssp EEEECCSTTHHHHHHHHHHHHT-CEEEECTTSC
T ss_pred EEEECCCCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence 9999999877777787888887 7888887653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.039 Score=48.96 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=67.4
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc-----------C----CceE-eCCCCCC
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-----------G----VTEF-LNPNDNN 242 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-----------g----~~~v-i~~~~~~ 242 (371)
.+..++++|+++|=+|+| +|..+.++|+..|+++|++++.++...+.+++. | .... +......
T Consensus 209 l~~l~Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~ 287 (406)
T d1u2za_ 209 YQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD 287 (406)
T ss_dssp HHHTTCCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred HHHhCCCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence 477899999999999987 488899999999987999999999877666431 1 1111 1110001
Q ss_pred chHHHHHHHHhCCCccEEEEc-CC-C---hHHHHHHHHHhccCCceEEEec
Q 017460 243 EPVQQVIKRITDGGADYSFEC-IG-D---TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~-~g-~---~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+..+. .. ..+|+|+-. .- . ...+.+.++.|++| |++|..-
T Consensus 288 ~~~~d~---~~-~~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~ 333 (406)
T d1u2za_ 288 NNRVAE---LI-PQCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK 333 (406)
T ss_dssp CHHHHH---HG-GGCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred cccccc---cc-ccceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence 122111 11 147787642 11 1 23467788889998 9998864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.41 E-value=0.024 Score=46.23 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=66.1
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHc----CCceEeCCCCCCchHHHHHHHHhC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAF----GVTEFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~l----g~~~vi~~~~~~~~~~~~v~~~~~ 254 (371)
+...+++|++||=+|+|+ |..+..+++..|. .+|++++.+++..+.+++. +....+..+ . ...+... ...
T Consensus 67 ~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d--~-~~~~~~~-~~~ 141 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD--A-TKPEEYR-ALV 141 (227)
T ss_dssp CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECC--T-TCGGGGT-TTC
T ss_pred cccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEE--C-CCccccc-ccc
Confidence 556799999999999875 7788888888864 4899999999988877542 222222111 0 0001111 111
Q ss_pred CCccEEEEcCCCh----HHHHHHHHHhccCCceEEEe
Q 017460 255 GGADYSFECIGDT----GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 255 gg~dvVid~~g~~----~~l~~~~~~l~~~~G~~v~~ 287 (371)
..+|+|+..+.-. ..+..+.+.|+++ |+++..
T Consensus 142 ~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~ 177 (227)
T d1g8aa_ 142 PKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA 177 (227)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence 2678887654322 2477788899997 988764
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=95.34 E-value=0.028 Score=47.14 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-C--hHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH---H-cCCce--EeCCCCCCchHHHHHHHHhC--
Q 017460 186 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKAK---A-FGVTE--FLNPNDNNEPVQQVIKRITD-- 254 (371)
Q Consensus 186 ~~~~VlI~Ga-g--~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~---~-lg~~~--vi~~~~~~~~~~~~v~~~~~-- 254 (371)
+|+++||+|+ | ++|.+.+..+...|+ +|+.+.++++..+.++ + .+... ..+..+ +....+.+.+...
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~ 81 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK-EEHFKSLYNSVKKDL 81 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccc-hhhHHHHHHHHHHHc
Confidence 5899999985 5 699999999999999 9999998875433332 2 22222 223331 3333333433332
Q ss_pred CCccEEEEcCCC
Q 017460 255 GGADYSFECIGD 266 (371)
Q Consensus 255 gg~dvVid~~g~ 266 (371)
+++|+++.+.+.
T Consensus 82 g~id~lV~nag~ 93 (274)
T d2pd4a1 82 GSLDFIVHSVAF 93 (274)
T ss_dssp SCEEEEEECCCC
T ss_pred CCCCeEEeeccc
Confidence 379999988874
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.31 E-value=0.019 Score=44.59 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=49.9
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCC---ceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGV---TEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~---~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
..++.+|+|+|+|+.+.+++..+...+ ++++++.|+.++.+.+ +.++. ...+... ......+|+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~-----------~~~~~~~di 82 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAVSMD-----------SIPLQTYDL 82 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG-----------GCCCSCCSE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhccccchhhhc-----------cccccccce
Confidence 457889999999999999888877655 4999999999887766 33431 1122111 011127899
Q ss_pred EEEcCCC
Q 017460 260 SFECIGD 266 (371)
Q Consensus 260 Vid~~g~ 266 (371)
+|+|++.
T Consensus 83 iIN~tp~ 89 (171)
T d1p77a1 83 VINATSA 89 (171)
T ss_dssp EEECCCC
T ss_pred eeecccc
Confidence 9999875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.29 E-value=0.04 Score=41.75 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=62.8
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDT 267 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~ 267 (371)
+|.++|+|.+|.+.+.-+...|. ++++.++++++.+.+ +++|+...- +..+.+. ..|+||-|+..
T Consensus 2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~~-------~~~~~~~-----~~dvIilavkp- 67 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYAM-------SHQDLID-----QVDLVILGIKP- 67 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBCS-------SHHHHHH-----TCSEEEECSCG-
T ss_pred EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeeec-------hhhhhhh-----ccceeeeecch-
Confidence 57889999999988776666687 999999999988776 567764221 2222222 58999999964
Q ss_pred HHHHHHHHHhccCCceEEEecC
Q 017460 268 GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 268 ~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
..++..++.+.++ ..++.+..
T Consensus 68 ~~~~~vl~~l~~~-~~iis~~a 88 (152)
T d2ahra2 68 QLFETVLKPLHFK-QPIISMAA 88 (152)
T ss_dssp GGHHHHHTTSCCC-SCEEECCT
T ss_pred HhHHHHhhhcccc-eeEecccc
Confidence 5678888888885 77776644
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.29 E-value=0.043 Score=44.07 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=63.9
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCceEeCCCCCCchHHHHHHHHhCCC
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEFLNPNDNNEPVQQVIKRITDGG 256 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~vi~~~~~~~~~~~~v~~~~~gg 256 (371)
...++||++||=+|+|+ |..+..+++..+-.+|++++.+++..+.+++ .+-...+-.+-..... .......
T Consensus 51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~----~~~~~~~ 125 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWK----YSGIVEK 125 (209)
T ss_dssp CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGG----TTTTCCC
T ss_pred cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccc----cccccce
Confidence 46799999999999865 5677778887775599999999988776633 3322222111001111 0001115
Q ss_pred ccEEEEcCCCh----HHHHHHHHHhccCCceEEEe
Q 017460 257 ADYSFECIGDT----GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 257 ~dvVid~~g~~----~~l~~~~~~l~~~~G~~v~~ 287 (371)
+|+++..+.-. ..+..+.+.|+++ |+++..
T Consensus 126 vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 159 (209)
T d1nt2a_ 126 VDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM 159 (209)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEEEEecccChhhHHHHHHHHHHHhccC-CeEEEE
Confidence 77776654322 2467778899997 998765
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.11 E-value=0.011 Score=49.11 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=49.7
Q ss_pred CEEEEEcc-ChHHHHHHHHHH---HcCCCEEEEEcCChhhHHHHHH---cCCc-e--EeCCCCCCchHHHHHH---HHhC
Q 017460 188 STVVIFGL-GTVGLSVAQGAK---ARGASRIIGVDTNPEKCEKAKA---FGVT-E--FLNPNDNNEPVQQVIK---RITD 254 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~---~~G~~~vi~~~~~~~~~~~~~~---lg~~-~--vi~~~~~~~~~~~~v~---~~~~ 254 (371)
++|||+|+ +++|++.++.+. ..|+ +|+++.+++++.+.+++ .+.. . .+|..+ .+...+.+. ....
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEGVTK 80 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHHHHG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc-HHHHHHHHhhhHHHhh
Confidence 47999986 899999776553 3588 99999999987765543 2222 2 235542 233333333 3333
Q ss_pred C-CccEEEEcCCC
Q 017460 255 G-GADYSFECIGD 266 (371)
Q Consensus 255 g-g~dvVid~~g~ 266 (371)
. ++|+++++.|.
T Consensus 81 ~~~iDiLvnNAg~ 93 (248)
T d1snya_ 81 DQGLNVLFNNAGI 93 (248)
T ss_dssp GGCCSEEEECCCC
T ss_pred cCCcceEEeeccc
Confidence 3 89999998764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.09 E-value=0.011 Score=43.13 Aligned_cols=38 Identities=32% Similarity=0.552 Sum_probs=33.7
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
++++++++|+|+|.+|.=.+..++.+|. +|..+.+.+.
T Consensus 27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~ 64 (121)
T d1d7ya2 27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR 64 (121)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence 5678999999999999999999999999 9999987763
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.08 E-value=0.022 Score=41.15 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=45.5
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEE
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSF 261 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVi 261 (371)
.++..++|+|+|+|.+|.=.+..+..+|. +|..+.+.+. ++..- ++...+.+++.... |+++..
T Consensus 18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~------------il~~~--d~~~~~~~~~~l~~~gV~i~~ 82 (117)
T d1onfa2 18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNR------------ILRKF--DESVINVLENDMKKNNINIVT 82 (117)
T ss_dssp TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSS------------SCTTS--CHHHHHHHHHHHHHTTCEEEC
T ss_pred ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhcc------------ccccc--cHHHHHHHHHHHHhCCCEEEE
Confidence 34556899999999999999999999999 9999987642 11111 34555555554433 666665
Q ss_pred E
Q 017460 262 E 262 (371)
Q Consensus 262 d 262 (371)
+
T Consensus 83 ~ 83 (117)
T d1onfa2 83 F 83 (117)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.93 E-value=0.0095 Score=49.30 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=64.5
Q ss_pred hhhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc----CCc-eEeCCCCCCchHHHHHHHH
Q 017460 178 AWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT-EFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 178 l~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~-~vi~~~~~~~~~~~~v~~~ 252 (371)
++......++.+||-+|+|. |..+..+++ .|+ +|++++.+++-.+.+++. +.. .++..+ +..+
T Consensus 33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d---------~~~l 100 (251)
T d1wzna1 33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGD---------VLEI 100 (251)
T ss_dssp HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESC---------GGGC
T ss_pred HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehh---------hhhc
Confidence 34555677788999999876 777777776 588 999999999888877543 322 122211 1112
Q ss_pred h-CCCccEEEEcCCC------h---HHHHHHHHHhccCCceEEE
Q 017460 253 T-DGGADYSFECIGD------T---GMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 253 ~-~gg~dvVid~~g~------~---~~l~~~~~~l~~~~G~~v~ 286 (371)
. .+.||+|+-..+. + ..++.+.+.|+++ |.++.
T Consensus 101 ~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii 143 (251)
T d1wzna1 101 AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT 143 (251)
T ss_dssp CCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred ccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence 2 2379998875432 1 2477888899997 98865
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.81 E-value=0.035 Score=47.88 Aligned_cols=101 Identities=24% Similarity=0.228 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHh-CC-C
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRIT-DG-G 256 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~~~~~~~v~~~~-~g-g 256 (371)
.+++|++||=.++|+ |..++.+|+ .|+++|+.++.+++..+.++ ..|...-+... ..+..+.+..+. .+ .
T Consensus 142 ~~~~g~~VLDl~~g~-G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~--~~d~~~~~~~~~~~~~~ 217 (324)
T d2as0a2 142 WVQPGDRVLDVFTYT-GGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI--VGSAFEEMEKLQKKGEK 217 (324)
T ss_dssp GCCTTCEEEETTCTT-THHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE--ESCHHHHHHHHHHTTCC
T ss_pred hcCCCCeeecccCcc-cchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceee--echhhhhhHHHHhccCC
Confidence 367899999886532 223333443 47779999999999887764 35653111111 123334444432 34 8
Q ss_pred ccEEEEcCCC---------------hHHHHHHHHHhccCCceEEEec
Q 017460 257 ADYSFECIGD---------------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 257 ~dvVid~~g~---------------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
||+|+--.+. ...+..++++|++| |.++.+.
T Consensus 218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s 263 (324)
T d2as0a2 218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCS 263 (324)
T ss_dssp EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEe
Confidence 9998752221 12467778899997 9988774
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=94.81 E-value=0.21 Score=37.42 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=62.8
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHc--CCCEEEEEcCChh--hH-HHHHHcCCceEeCCCCCCchH---------------
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPE--KC-EKAKAFGVTEFLNPNDNNEPV--------------- 245 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~--G~~~vi~~~~~~~--~~-~~~~~lg~~~vi~~~~~~~~~--------------- 245 (371)
..+|.|+|+ |++|.-++++.+.. .+ +|+++..... ++ +.+++|.+..++-.+ ....
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d--~~~~~~l~~~~~~~~~~v~ 78 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIAD--PSLYNDLKEALAGSSVEAA 78 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESC--GGGHHHHHHHTTTCSSEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceecc--HHHHHHHHHHhhhcccccc
Confidence 368999997 99999999999875 46 7777755443 32 334778887654332 1111
Q ss_pred --HHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecC
Q 017460 246 --QQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 246 --~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+.+.+.....+|+|+.++.+-..+...+.+++. |.-+.++.
T Consensus 79 ~g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~--gk~iaLAN 122 (150)
T d1r0ka2 79 AGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRK--GKTVALAN 122 (150)
T ss_dssp ESHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHT--TSEEEECC
T ss_pred cCccchheecccccceeeeecCchhHHHHHHHHHhc--CCEEEEec
Confidence 1222222222678888887666678888888887 45555543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.78 E-value=0.11 Score=40.08 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=38.0
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~ 232 (371)
.+|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 46 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA 46 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence 468899999999998888878899 99999999999998876654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.75 E-value=0.051 Score=44.29 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=63.3
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC----CceEeCCCCCCchHHHHHHHHhCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG----VTEFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg----~~~vi~~~~~~~~~~~~v~~~~~g 255 (371)
+...+++|++||=+|+|. |..+..+++...-.+|++++.+++..+.++++- ....+........ .....
T Consensus 68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~------~~~~~ 140 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ------EYANI 140 (230)
T ss_dssp CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG------GGTTT
T ss_pred HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc------ccccc
Confidence 566799999999999864 777778887654449999999999888776532 1122211100111 11111
Q ss_pred --CccEEEEcCCCh----HHHHHHHHHhccCCceEEEe
Q 017460 256 --GADYSFECIGDT----GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 256 --g~dvVid~~g~~----~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+|+++...... ..+..+...|+++ |.++..
T Consensus 141 ~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~ 177 (230)
T d1g8sa_ 141 VEKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEE
Confidence 455666655322 2367777889997 987765
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.74 E-value=0.012 Score=46.47 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=31.6
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
+++|+|+|+|+.|+.++..+..+|++.|.++++++.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 678999999999999999999999855888887663
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.019 Score=44.92 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=33.3
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
...+++|+|+|+|+.|+.|+..+...|. +|++++..+
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~ 76 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS 76 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence 4456899999999999999999999999 999998865
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.69 E-value=0.051 Score=43.81 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=47.0
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCC-EEEEEcCChhhHHHHHHcCCceE-eCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGAS-RIIGVDTNPEKCEKAKAFGVTEF-LNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~lg~~~v-i~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
.+|||+|+ |.+|...+..+...|.. .|+.+.+++++...+.. +...+ .|.. + .+.+.+... ++|.|+.+.
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~--~---~~~~~~~~~-~~d~vi~~a 76 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDIT--D---ADSINPAFQ-GIDALVILT 76 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTT--S---HHHHHHHHT-TCSEEEECC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeec--c---ccccccccc-cceeeEEEE
Confidence 58999986 99999999999888852 57777788877655432 33322 2332 1 122333333 689999887
Q ss_pred CC
Q 017460 265 GD 266 (371)
Q Consensus 265 g~ 266 (371)
+.
T Consensus 77 ~~ 78 (252)
T d2q46a1 77 SA 78 (252)
T ss_dssp CC
T ss_pred ee
Confidence 53
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.66 E-value=0.02 Score=47.39 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
..++|+|+|+|+.|++++..+...|. +|+++++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 45789999999999999999988999 999999754
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.026 Score=46.64 Aligned_cols=47 Identities=30% Similarity=0.357 Sum_probs=39.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH-HHcCCc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA-KAFGVT 233 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~lg~~ 233 (371)
+|+.+||+|+ +++|.+.++-+...|+ +|+.+++++++.+.+ ++++..
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~ 52 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNN 52 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC
Confidence 5899999986 8999999999999999 999999998877655 566653
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=94.62 E-value=0.11 Score=40.94 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.++.|+|.|.+|...+++++..|. +|+..++...........+... ..++.+.++ ..|+|.-+..
T Consensus 46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~-------~~~l~~ll~-----~sD~v~l~~p 112 (191)
T d1gdha1 46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQATF-------HDSLDSLLS-----VSQFFSLNAP 112 (191)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCEE-------CSSHHHHHH-----HCSEEEECCC
T ss_pred cccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhcccccc-------cCCHHHHHh-----hCCeEEecCC
Confidence 37899999999999999999999999 9999987655443333332211 123333333 2578776554
Q ss_pred ChH-----HHHHHHHHhccCCceEEEec
Q 017460 266 DTG-----MITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~-----~l~~~~~~l~~~~G~~v~~g 288 (371)
.+. .-...++.++++ ..+|.++
T Consensus 113 lt~~T~~li~~~~l~~mk~~-a~lIN~s 139 (191)
T d1gdha1 113 STPETRYFFNKATIKSLPQG-AIVVNTA 139 (191)
T ss_dssp CCTTTTTCBSHHHHTTSCTT-EEEEECS
T ss_pred CCchHhheecHHHhhCcCCc-cEEEecC
Confidence 321 123667777776 6666664
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.031 Score=45.54 Aligned_cols=105 Identities=12% Similarity=-0.007 Sum_probs=64.8
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-------------EeCCCCCCch-H
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-------------FLNPNDNNEP-V 245 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-------------vi~~~~~~~~-~ 245 (371)
+.....++.+||..|+|. |..+..+|+ .|+ +|++++.+++-.+.+++..... .........+ +
T Consensus 39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 115 (229)
T d2bzga1 39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY 115 (229)
T ss_dssp HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence 344678899999999875 777777776 699 9999999999888775532110 0000000000 0
Q ss_pred HHHHHHH---hCCCccEEEEcCCC--------hHHHHHHHHHhccCCceEEEec
Q 017460 246 QQVIKRI---TDGGADYSFECIGD--------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 246 ~~~v~~~---~~gg~dvVid~~g~--------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
...+..+ ..+.+|+|+++..- ...+....++|+++ |+++...
T Consensus 116 ~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~ 168 (229)
T d2bzga1 116 CCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCV 168 (229)
T ss_dssp ESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred EcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEE
Confidence 0001111 12378999986532 12467888899997 9876654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=94.58 E-value=0.086 Score=41.60 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=56.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...+++++.+|+ +|+..++...+. .....+... ..++.+.++ ..|+|.-+..
T Consensus 48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-~~~~~~~~~-------~~~l~~ll~-----~sD~i~~~~p 113 (193)
T d1mx3a1 48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQR-------VSTLQDLLF-----HSDCVTLHCG 113 (193)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEE-------CSSHHHHHH-----HCSEEEECCC
T ss_pred eCceEEEeccccccccceeeeecccc-ceeeccCccccc-chhhhcccc-------ccchhhccc-----cCCEEEEeec
Confidence 57899999999999999999999999 999998754432 223334321 112333333 2577766554
Q ss_pred ChH-H----HHHHHHHhccCCceEEEec
Q 017460 266 DTG-M----ITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~-~----l~~~~~~l~~~~G~~v~~g 288 (371)
.+. + -...++.++++ ..+|..+
T Consensus 114 lt~~T~~li~~~~l~~mk~~-a~lIN~s 140 (193)
T d1mx3a1 114 LNEHNHHLINDFTVKQMRQG-AFLVNTA 140 (193)
T ss_dssp CCTTCTTSBSHHHHTTSCTT-EEEEECS
T ss_pred ccccchhhhhHHHHhccCCC-CeEEecC
Confidence 321 1 23556777775 6666664
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=94.55 E-value=0.046 Score=46.81 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=45.6
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC--Chhh---HHHHHHcCCceEe--CCCCCCchHHHHHHHHhCC-CccE
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDT--NPEK---CEKAKAFGVTEFL--NPNDNNEPVQQVIKRITDG-GADY 259 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~--~~~~---~~~~~~lg~~~vi--~~~~~~~~~~~~v~~~~~g-g~dv 259 (371)
+|||+|+ |.+|...+..+...|+ +|+++++ ...+ .+.+...+--.++ |.. + .+.+.+...+ ++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~--~---~~~l~~~~~~~~~d~ 75 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR--N---KNDVTRLITKYMPDS 75 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTT--C---HHHHHHHHHHHCCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccC--C---HHHHHHHHHhcCCce
Confidence 6999986 9999999998888899 9999863 2222 2333333322233 332 2 2234444445 7899
Q ss_pred EEEcCC
Q 017460 260 SFECIG 265 (371)
Q Consensus 260 Vid~~g 265 (371)
||.+..
T Consensus 76 Vih~aa 81 (338)
T d1orra_ 76 CFHLAG 81 (338)
T ss_dssp EEECCC
T ss_pred EEeecc
Confidence 999875
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=94.52 E-value=0.16 Score=34.94 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=51.2
Q ss_pred CCCCCCEEEEEccChHHHHH-HHHHHHcCCCEEEEEcCCh-hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 183 DISKGSTVVIFGLGTVGLSV-AQGAKARGASRIIGVDTNP-EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~a-i~la~~~G~~~vi~~~~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
.+...+++.++|-|++|..+ +++++..|+ .|...+... ...+.+++.|+....... .... .+.|+|
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~--~~~i---------~~~d~v 71 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHA--EEHI---------EGASVV 71 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCC--GGGG---------TTCSEE
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCc--cccC---------CCCCEE
Confidence 45667899999988888776 899999999 999998763 455667788986544443 1111 257888
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
+-+.+-
T Consensus 72 V~S~AI 77 (96)
T d1p3da1 72 VVSSAI 77 (96)
T ss_dssp EECTTS
T ss_pred EECCCc
Confidence 776654
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.24 Score=37.06 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=63.1
Q ss_pred EEEEEcc-ChHHHHHHHHHHHc--CCCEEEEEcCChh--hH-HHHHHcCCceEeCCCCCCchH-----------------
Q 017460 189 TVVIFGL-GTVGLSVAQGAKAR--GASRIIGVDTNPE--KC-EKAKAFGVTEFLNPNDNNEPV----------------- 245 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~--G~~~vi~~~~~~~--~~-~~~~~lg~~~vi~~~~~~~~~----------------- 245 (371)
+|.|+|+ |++|.-++.+.+.. .+ +|+++..... .+ +.+++|.+..++-.+ +..+
T Consensus 3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d--~~~~~~l~~~l~~~~~~~~~~ 79 (151)
T d1q0qa2 3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDD--EASAKLLKTMLQQQGSRTEVL 79 (151)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESS--HHHHHHHHHHHHHTTCCCEEE
T ss_pred eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhccccccc--HHHHHHHHHHhhhhccccccc
Confidence 6889997 99999999999876 35 7777655433 32 234778887655332 1111
Q ss_pred --HHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecC
Q 017460 246 --QQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 246 --~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+.+.++... .+|+|+.++.+-..+...+.+++. |+-+.+..
T Consensus 80 ~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~--gk~iaLAN 124 (151)
T d1q0qa2 80 SGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRA--GKTILLAN 124 (151)
T ss_dssp ESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHT--TCEEEECC
T ss_pred cChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhc--CCeEEEEc
Confidence 1223333333 789999988777778888888887 55566644
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.48 E-value=0.13 Score=39.63 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=59.9
Q ss_pred EEEEEccChHHHHHHHHHHHcC-CCEEEEEcC-C-hhhHHHHHHcCCceEeCCCCCCchHHH-------HHHHHhCCCcc
Q 017460 189 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDT-N-PEKCEKAKAFGVTEFLNPNDNNEPVQQ-------VIKRITDGGAD 258 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~-~-~~~~~~~~~lg~~~vi~~~~~~~~~~~-------~v~~~~~gg~d 258 (371)
+|.|+|-|-+|+..++++...+ . .++++.. + ......+..++.+......+....+.+ ...++. .++|
T Consensus 3 ~VgINGfGRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-~~vD 80 (171)
T d1cf2o1 3 AVAINGYGTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEAD 80 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTCS
T ss_pred EEEEEcCcHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhh-cCCC
Confidence 6889999999999999887665 4 6666543 2 234455556665433322100000100 011111 2699
Q ss_pred EEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 259 YSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 259 vVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+|+||+|.-...+.+-..+..+ -+++..+..
T Consensus 81 vViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~ 111 (171)
T d1cf2o1 81 IVIDCTPEGIGAKNLKMYKEKG-IKAIFQGGE 111 (171)
T ss_dssp EEEECCSTTHHHHHHHHHHHTT-CEEEECTTS
T ss_pred EEEEccCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence 9999999876667777778876 777776544
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0097 Score=51.27 Aligned_cols=43 Identities=30% Similarity=0.412 Sum_probs=32.1
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC 224 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~ 224 (371)
+.....+|++||-+|+| .|.+++.+|+ .|+++|++++.++.-.
T Consensus 29 ~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~ 71 (311)
T d2fyta1 29 QNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILY 71 (311)
T ss_dssp HCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHH
T ss_pred hccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHH
Confidence 34456789999999987 4666666665 4777999999888643
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.39 E-value=0.035 Score=48.15 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=38.7
Q ss_pred cCCCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH
Q 017460 182 ADISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK 228 (371)
Q Consensus 182 ~~~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~ 228 (371)
.-+++|++|||+|+ |-+|...+..+...|+ +|+++.++..+.+.++
T Consensus 6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~ 52 (342)
T d1y1pa1 6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ 52 (342)
T ss_dssp CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred CCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence 44678999999986 8999999888888899 9999999887766554
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=94.39 E-value=0.35 Score=36.00 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=61.2
Q ss_pred CEEEEEc-cChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC--CccEEEEcC
Q 017460 188 STVVIFG-LGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG--GADYSFECI 264 (371)
Q Consensus 188 ~~VlI~G-ag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g--g~dvVid~~ 264 (371)
.+|.|+| .|.+|...+..++..|+ .|.+.++++.........+++.++.... .....+.+.+.... .=.+++|+.
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~v~~~~~~~~~~~~iiiD~~ 87 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP-INLTLETIERLKPYLTENMLLADLT 87 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC-GGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc-hhhheeeeecccccccCCceEEEec
Confidence 5899999 79999999999999999 9999999887766665566666554431 33444444444332 224788887
Q ss_pred CChHHHHHHHHHhccCCceEEE
Q 017460 265 GDTGMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~ 286 (371)
+.....-..+....+ .+++.
T Consensus 88 Svk~~~~~~~~~~~~--~~~v~ 107 (152)
T d2pv7a2 88 SVKREPLAKMLEVHT--GAVLG 107 (152)
T ss_dssp SCCHHHHHHHHHHCS--SEEEE
T ss_pred ccCHHHHHHHHHHcc--CCEEE
Confidence 654333333333333 45543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.38 E-value=0.019 Score=48.34 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=30.8
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+++|+|+|+|..|++++..+...|. +|.+++.++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence 5789999999999999999999999 999998754
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.011 Score=45.58 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=54.2
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce-----EeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE-----FLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~-----vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+|+|+|+|.+|.+.+..+...|. .|..+++++++.+..+..+.+. .+.. +..+.+ +.+|+||-+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~D~iii~ 70 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTA-----NDPDFL-----ATSDLLLVT 70 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEE-----SCHHHH-----HTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCcccccccccc-----chhhhh-----cccceEEEe
Confidence 68999999999998888888898 9999999887554433333211 1111 111111 268999999
Q ss_pred CCChHHHHHHHHH----hccCCceEEEe
Q 017460 264 IGDTGMITTALQS----CCDGWGLAVTL 287 (371)
Q Consensus 264 ~g~~~~l~~~~~~----l~~~~G~~v~~ 287 (371)
+... .++.+++. +.++ ..++.+
T Consensus 71 vka~-~~~~~~~~l~~~~~~~-~~Iv~~ 96 (167)
T d1ks9a2 71 LKAW-QVSDAVKSLASTLPVT-TPILLI 96 (167)
T ss_dssp SCGG-GHHHHHHHHHTTSCTT-SCEEEE
T ss_pred eccc-chHHHHHhhccccCcc-cEEeec
Confidence 9864 34444443 4443 556555
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.097 Score=43.13 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=51.6
Q ss_pred CCCCEEEEEcc-C--hHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceEe--CCCCCCchHHHHHHHHhCC
Q 017460 185 SKGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFL--NPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 185 ~~~~~VlI~Ga-g--~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vi--~~~~~~~~~~~~v~~~~~g 255 (371)
-+|+++||+|+ + ++|.+.+..+...|+ +|+.+.++++..+.+ ...+....+ +.. +..+..+........
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVA-EDASIDTMFAELGKV 80 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTT-CHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccc-hHHHHHHHHHHhhhc
Confidence 36899999985 5 688888888889999 899998887755544 334433332 222 123333334443332
Q ss_pred --CccEEEEcCCC
Q 017460 256 --GADYSFECIGD 266 (371)
Q Consensus 256 --g~dvVid~~g~ 266 (371)
..|+.+++.+.
T Consensus 81 ~~~~d~~v~~a~~ 93 (258)
T d1qsga_ 81 WPKFDGFVHSIGF 93 (258)
T ss_dssp CSSEEEEEECCCC
T ss_pred ccccceEEEeecc
Confidence 78999987654
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.23 E-value=0.05 Score=42.32 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=33.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~ 227 (371)
-+|.+|||+|+|+++.+++..+... +++.++.|+.+|.+.+
T Consensus 16 ~~~k~vlIlGaGG~arai~~aL~~~--~~i~I~nR~~~ka~~l 56 (177)
T d1nvta1 16 VKDKNIVIYGAGGAARAVAFELAKD--NNIIIANRTVEKAEAL 56 (177)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSS--SEEEEECSSHHHHHHH
T ss_pred cCCCEEEEECCcHHHHHHHHHHccc--cceeeehhhhhHHHHH
Confidence 4689999999999999887666443 4899999999887765
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.22 E-value=0.11 Score=42.16 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=67.8
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHh--
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRIT-- 253 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~~~~~~~v~~~~-- 253 (371)
..+..+..+||-+|.+ +|..++.+|+++.- .+++.++.+++..+.++ +.|...-+... ..+..+.+.++.
T Consensus 54 L~~~~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~--~g~a~~~L~~l~~~ 130 (227)
T d1susa1 54 LLKLINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFR--EGPALPVLDEMIKD 130 (227)
T ss_dssp HHHHHTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEE--ESCHHHHHHHHHHC
T ss_pred HHHhcCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeee--ehHHHHHHHHHHhc
Confidence 3445567899999864 47788888887742 39999999998887764 45654322221 223445555542
Q ss_pred ---CCCccEEE-EcCCCh--HHHHHHHHHhccCCceEEEec
Q 017460 254 ---DGGADYSF-ECIGDT--GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ---~gg~dvVi-d~~g~~--~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.||.|| |+--.. ..++.++..++++ |.++.=.
T Consensus 131 ~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~DN 170 (227)
T d1susa1 131 EKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN 170 (227)
T ss_dssp GGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEET
T ss_pred cccCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEcc
Confidence 33799986 433222 3578899999997 8876643
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.09 E-value=0.066 Score=38.58 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=35.7
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.....++.+|+|.|+|.+|+=.+..+..+|. +|..+.+.+
T Consensus 15 ~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~ 55 (121)
T d1mo9a2 15 EELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE 55 (121)
T ss_dssp HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred HHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence 44566788999999999999999999999998 999998765
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.054 Score=42.82 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=34.7
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~ 227 (371)
++|.|+|+|.+|...++++...|+ .|+..+++++.++.+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a 43 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS 43 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHH
Confidence 579999999999998899989999 999999999876654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.045 Score=39.34 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=31.3
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
.++|+|+|+|.+|+=+++.++.+|. +|.++.+.+.
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDA 55 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecch
Confidence 4789999999999999999999999 9999988653
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.041 Score=39.25 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=45.3
Q ss_pred CCCC-CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhCC-CccEE
Q 017460 184 ISKG-STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITDG-GADYS 260 (371)
Q Consensus 184 ~~~~-~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~g-g~dvV 260 (371)
+.++ .+|.|+|+|.+|++.++-|+.+|+ ++++.+.+++.- +.++....++ +++ + .+.+.++... ++|+|
T Consensus 7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~~P--A~~va~~~i~~~~~--d---~~~l~~~~~~~~~Dvi 78 (111)
T d1kjqa2 7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYADAP--AMHVAHRSHVINML--D---GDALRRVVELEKPHYI 78 (111)
T ss_dssp TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTTCG--GGGGSSEEEECCTT--C---HHHHHHHHHHHCCSEE
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCCCc--hhhcCCeEEECCCC--C---HHHHHHHHHhhCCceE
Confidence 3444 469999999999999999999999 999998776531 2223333332 443 2 2344444433 67887
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=94.03 E-value=0.057 Score=44.87 Aligned_cols=80 Identities=13% Similarity=0.275 Sum_probs=53.4
Q ss_pred CCCCCEEEEEcc-C--hHHHHHHHHHHHcCCCEEEEEcCChhhH-HHH-HHcCCce---EeCCCCCC---chHHHHHHHH
Q 017460 184 ISKGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEKC-EKA-KAFGVTE---FLNPNDNN---EPVQQVIKRI 252 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g--~~G~~ai~la~~~G~~~vi~~~~~~~~~-~~~-~~lg~~~---vi~~~~~~---~~~~~~v~~~ 252 (371)
+-+|+++||.|+ | ++|.+.++-+...|+ +|+.+.++.++. +.+ ++++... ..|..+ . ....+.+.+.
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~-~~~~~~~~~~v~~~ 80 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN-EEHLASLAGRVTEA 80 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeeccc-ccccccccchhhhc
Confidence 346899999984 4 599999988899999 999998887765 333 4455422 234431 1 2334444444
Q ss_pred hCC--CccEEEEcCC
Q 017460 253 TDG--GADYSFECIG 265 (371)
Q Consensus 253 ~~g--g~dvVid~~g 265 (371)
... ..|+++.+.+
T Consensus 81 ~~~~~~ld~~i~~ag 95 (268)
T d2h7ma1 81 IGAGNKLDGVVHSIG 95 (268)
T ss_dssp HCTTCCEEEEEECCC
T ss_pred cccCCCcceeeeccc
Confidence 433 6899999887
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.99 E-value=0.14 Score=39.95 Aligned_cols=87 Identities=25% Similarity=0.332 Sum_probs=58.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+.++.|+|.|.+|...+++++..|+ +|++.++...+... ...+.. . .++.+.++ ..|+|+-+..
T Consensus 43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~-~-------~~l~ell~-----~sDiv~~~~P 107 (184)
T d1ygya1 43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIE-L-------LSLDDLLA-----RADFISVHLP 107 (184)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCE-E-------CCHHHHHH-----HCSEEEECCC
T ss_pred cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCce-e-------ccHHHHHh-----hCCEEEEcCC
Confidence 57899999999999999999999999 99999876554333 333432 1 12333333 3688877665
Q ss_pred ChH----H-HHHHHHHhccCCceEEEec
Q 017460 266 DTG----M-ITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~----~-l~~~~~~l~~~~G~~v~~g 288 (371)
.+. . -...++.++++ ..+|.++
T Consensus 108 lt~~T~~lin~~~l~~mk~~-a~lIN~s 134 (184)
T d1ygya1 108 KTPETAGLIDKEALAKTKPG-VIIVNAA 134 (184)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-EEEEECS
T ss_pred CCchhhhhhhHHHHhhhCCC-ceEEEec
Confidence 321 1 24667778876 6666664
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=93.96 E-value=0.18 Score=38.48 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=59.8
Q ss_pred EEEEEccChHHHH-HHHHHHHc-CCCEEEEEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 189 TVVIFGLGTVGLS-VAQGAKAR-GASRIIGVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 189 ~VlI~Gag~~G~~-ai~la~~~-G~~~vi~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+|.|+|+|..|.- .+..++.. ++ .+++++.++++.+.+ ++++...+++. +.+ +....+|+|+-++.
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~----ll~~~iD~V~I~tp 71 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTD------YRD----VLQYGVDAVMIHAA 71 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSS------TTG----GGGGCCSEEEECSC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhccccccccc------HHH----hcccccceeccccc
Confidence 5789999999854 45555544 55 777888888877666 55776544322 111 12126899999998
Q ss_pred ChHHHHHHHHHhccCCceEEEecC
Q 017460 266 DTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 266 ~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.....+.+.+++.. |.-+.+.-
T Consensus 72 ~~~H~~~~~~al~~--gk~V~~EK 93 (167)
T d1xeaa1 72 TDVHSTLAAFFLHL--GIPTFVDK 93 (167)
T ss_dssp GGGHHHHHHHHHHT--TCCEEEES
T ss_pred cccccccccccccc--ccccccCC
Confidence 87788888888887 45455543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.41 Score=35.70 Aligned_cols=94 Identities=10% Similarity=0.105 Sum_probs=58.5
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHH-HH---HHcCCceEe-CCCCCCchHHHHHHHHhCCCccEEE
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE-KA---KAFGVTEFL-NPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~-~~---~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
-++++|.|.|.+|...++.+...|. .|++++.++++.. .+ +..|...+. |.. + .+.+++.--..+|.++
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~--d---~~~L~~a~i~~a~~vi 76 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIPGDSN--D---SSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEESCTT--S---HHHHHHHTTTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcEEEEccCc--c---hHHHHHhccccCCEEE
Confidence 3579999999999999999999998 8888888876432 22 334555444 222 2 2333333223789999
Q ss_pred EcCCChHH---HHHHHHHhccCCceEEEe
Q 017460 262 ECIGDTGM---ITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 262 d~~g~~~~---l~~~~~~l~~~~G~~v~~ 287 (371)
-++++... +-...+.+.+. -+++.-
T Consensus 77 ~~~~~d~~n~~~~~~~r~~~~~-~~iia~ 104 (153)
T d1id1a_ 77 ALSDNDADNAFVVLSAKDMSSD-VKTVLA 104 (153)
T ss_dssp ECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred EccccHHHHHHHHHHHHHhCCC-CceEEE
Confidence 88886532 22233344453 455544
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.91 E-value=0.049 Score=39.52 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=31.0
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.++++|+|+|.+|.=.++.+..+|+ +|..+.+.+
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP 56 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence 4799999999999999999999999 999998765
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.90 E-value=0.013 Score=47.44 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=61.2
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHhCCCc
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
.++++.+||-+|+|. |..+..+++ .|+ +|++++.+++..+.+++ .+.. ..+... ..++ .+.++.+
T Consensus 34 ~l~~~~~ILDiGcG~-G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d--~~~l-----~~~~~~f 103 (226)
T d1ve3a1 34 YMKKRGKVLDLACGV-GGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGD--ARKL-----SFEDKTF 103 (226)
T ss_dssp SCCSCCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECC--TTSC-----CSCTTCE
T ss_pred hcCCCCEEEEECCCc-chhhhhHhh-hhc-ccccccccccchhhhhhhhccccccccccccc--cccc-----cccCcCc
Confidence 357889999999875 777778876 487 99999999998877754 3321 122111 1110 0112379
Q ss_pred cEEEEcCCC-----h---HHHHHHHHHhccCCceEEEe
Q 017460 258 DYSFECIGD-----T---GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 258 dvVid~~g~-----~---~~l~~~~~~l~~~~G~~v~~ 287 (371)
|+|+-...- . ..++...+.|+++ |+++..
T Consensus 104 D~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~ 140 (226)
T d1ve3a1 104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY 140 (226)
T ss_dssp EEEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred eEEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence 998764331 1 2477888899997 998654
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.43 Score=41.21 Aligned_cols=108 Identities=26% Similarity=0.379 Sum_probs=69.8
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc---CChhhHHHHHHcCCceEeCC-CC---------------
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD---TNPEKCEKAKAFGVTEFLNP-ND--------------- 240 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~lg~~~vi~~-~~--------------- 240 (371)
+...++++..|+...+|..|++.+..|+.+|. +++++. .+++|.+.++.+|++.+.-. ..
T Consensus 90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi-~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~ 168 (355)
T d1jbqa_ 90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGY-RCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRL 168 (355)
T ss_dssp HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHH
T ss_pred HcCCcccCceEEEecccchhhHHHHHHHhccC-CeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHH
Confidence 44556667776666789999999999999999 555543 35578888999999744311 00
Q ss_pred --------------CC-------chHHHHHHHHhCCCccEEEEcCCChHHH---HHHHHHhccCCceEEEecC
Q 017460 241 --------------NN-------EPVQQVIKRITDGGADYSFECIGDTGMI---TTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 241 --------------~~-------~~~~~~v~~~~~gg~dvVid~~g~~~~l---~~~~~~l~~~~G~~v~~g~ 289 (371)
+. .....++.+..++.+|.|+-++|+...+ -..++...+. -+++.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~-~kii~vep 240 (355)
T d1jbqa_ 169 KNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPG-CRIIGVDP 240 (355)
T ss_dssp HHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred HHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCc-ceEEeecc
Confidence 00 1122344444455789999999876543 3445555665 67766543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.027 Score=37.25 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=30.3
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
++|.|+|+|-+|++.++-++.+|+ ++++++.+++
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence 478999999999999999999999 9999987654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.77 E-value=0.028 Score=40.89 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=42.8
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEc
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFEC 263 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~ 263 (371)
.++++|+|+|.+|+=.++.++.+|+ +|..+.+++ .++.+ ++...+.+.+.... |+++..++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~----~l~~~-----------D~~~~~~l~~~l~~~Gv~i~~~~ 81 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI----LLRGF-----------DQDMANKIGEHMEEHGIKFIRQF 81 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS----SSTTS-----------CHHHHHHHHHHHHHTTEEEEESC
T ss_pred CCeEEEECCCccHHHHHHHHhhcCC-eEEEEEech----hhccC-----------CHHHHHHHHHHHHHCCCEEEECC
Confidence 4689999999999999999999999 888886541 22211 44555566555444 66666553
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.71 E-value=0.018 Score=48.91 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=61.5
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc----CCc------eEeCCCCCCchHHHHHHH
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF----GVT------EFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l----g~~------~vi~~~~~~~~~~~~v~~ 251 (371)
.+.+++.+||-+|+|. |..++.+++. |+ +|++++.+++-++.+++. +.. .+.+. ++...-..
T Consensus 52 l~~~~~~~vLD~GcG~-G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 123 (292)
T d1xvaa_ 52 LRQHGCHRVLDVACGT-GVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA-----NWLTLDKD 123 (292)
T ss_dssp HHHTTCCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC-----CGGGHHHH
T ss_pred hhhcCCCEEEEecCCC-cHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeec-----cccccccc
Confidence 3445678999998874 6777788765 88 999999999988777542 211 01111 11111122
Q ss_pred HhCC-CccEEEEcCCC--------------hHHHHHHHHHhccCCceEEE
Q 017460 252 ITDG-GADYSFECIGD--------------TGMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 252 ~~~g-g~dvVid~~g~--------------~~~l~~~~~~l~~~~G~~v~ 286 (371)
.... ++|.|+..... ...++.+.+.|+++ |.++.
T Consensus 124 ~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~ 172 (292)
T d1xvaa_ 124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI 172 (292)
T ss_dssp SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence 3333 89999864321 12578889999998 99876
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.70 E-value=0.064 Score=38.66 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
..++++|+|+|.+|.=.++.+..+|. +|..+.+.+
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~ 55 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD 55 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence 35889999999999999999999999 999997764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.69 E-value=0.29 Score=32.98 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=47.0
Q ss_pred CEEEEEccChHHHHH-HHHHHHcCCCEEEEEcCCh-hhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 188 STVVIFGLGTVGLSV-AQGAKARGASRIIGVDTNP-EKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 188 ~~VlI~Gag~~G~~a-i~la~~~G~~~vi~~~~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+|-++|-|++|..+ +++++..|+ .|...+..+ +..+.++++|+....... ..++ .++|+|+-+..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~--~~~i---------~~~d~vV~SsA 69 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHS--ADNW---------YDPDLVIKTPA 69 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCC--TTSC---------CCCSEEEECTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeec--cccc---------CCCCEEEEecC
Confidence 357778988888754 688899999 999999876 456678999986444332 2221 25788887665
Q ss_pred C
Q 017460 266 D 266 (371)
Q Consensus 266 ~ 266 (371)
-
T Consensus 70 I 70 (89)
T d1j6ua1 70 V 70 (89)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=93.57 E-value=0.66 Score=38.65 Aligned_cols=107 Identities=22% Similarity=0.268 Sum_probs=65.9
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc---CChhhHHHHHHcCCceEe-CCCC---------------
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD---TNPEKCEKAKAFGVTEFL-NPND--------------- 240 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~lg~~~vi-~~~~--------------- 240 (371)
+...+.++.+|+...+|..|++++..++.+|. +++++. .++.|.+.++.+|++.++ ....
T Consensus 53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~ 131 (292)
T d2bhsa1 53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGY-RMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANR 131 (292)
T ss_dssp HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH
T ss_pred HhCCcCCCceeeeecccchhHHHHHHHHhcCc-ceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhcccc
Confidence 44555666666666789999999999999998 544443 366788888999986433 2211
Q ss_pred ---------CCch--------HHHHHHHHhCCCccEEEEcCCChHHHH---HHHHHhccCCceEEEec
Q 017460 241 ---------NNEP--------VQQVIKRITDGGADYSFECIGDTGMIT---TALQSCCDGWGLAVTLG 288 (371)
Q Consensus 241 ---------~~~~--------~~~~v~~~~~gg~dvVid~~g~~~~l~---~~~~~l~~~~G~~v~~g 288 (371)
++.. ...++.+..++.+|.++-++|+...+. ..++...+. .+++.+-
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~-~~i~~Ve 198 (292)
T d2bhsa1 132 GEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKP-VTIVGLQ 198 (292)
T ss_dssp TSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSC-CEEEEEE
T ss_pred ccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCc-ceEEEec
Confidence 0110 122333334446899998888755443 444445554 6665553
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.56 E-value=0.085 Score=44.52 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=64.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC----------ceEeCCCCCCchHHHHHHHHhC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV----------TEFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~----------~~vi~~~~~~~~~~~~v~~~~~ 254 (371)
.+.++|||+|.|. |.++-.++++.+..+|.+++.+++=.+.++++-. ..++. .+-.+.+++...
T Consensus 79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~-----~Da~~~l~~~~~ 152 (290)
T d1xj5a_ 79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI-----GDGVAFLKNAAE 152 (290)
T ss_dssp SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE-----SCHHHHHHTSCT
T ss_pred CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE-----ccHHHHHhhccc
Confidence 4567999998654 4455577787777699999999998888877431 01221 233444544444
Q ss_pred CCccEEE-EcCCC---------hHHHHHHHHHhccCCceEEEec
Q 017460 255 GGADYSF-ECIGD---------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 255 gg~dvVi-d~~g~---------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.+|+|| |+... .+-++.+.++|+++ |.++.-.
T Consensus 153 ~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~ 195 (290)
T d1xj5a_ 153 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQA 195 (290)
T ss_dssp TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred cCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEec
Confidence 4899865 44431 23577888899997 9988754
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.53 E-value=0.64 Score=33.92 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=20.9
Q ss_pred EEEEEcc-ChHHHHHHHHHHH-cCCCEEEEE
Q 017460 189 TVVIFGL-GTVGLSVAQGAKA-RGASRIIGV 217 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~-~G~~~vi~~ 217 (371)
+|.|.|+ |-+|...++.... -++ ++.+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~ 30 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAE 30 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTS-EEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-EEEEE
Confidence 5889996 9999998887755 466 55543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.52 E-value=0.021 Score=45.26 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred hhhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc----eEeCCCCCCchHHHHHH
Q 017460 179 WNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT----EFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~----~vi~~~~~~~~~~~~v~ 250 (371)
.+.....++++||-+|+|. |..++.+++ .+. +|++++.++...+.+++ .+.. .++..+ + ..
T Consensus 45 i~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d-----~---~~ 113 (194)
T d1dusa_ 45 VENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD-----L---YE 113 (194)
T ss_dssp HHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECS-----T---TT
T ss_pred HHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcc-----h---hh
Confidence 4566788899999998764 455566665 455 99999999987777743 3332 222221 1 01
Q ss_pred HHhCCCccEEEEcCC---Ch----HHHHHHHHHhccCCceEEEe
Q 017460 251 RITDGGADYSFECIG---DT----GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 251 ~~~~gg~dvVid~~g---~~----~~l~~~~~~l~~~~G~~v~~ 287 (371)
...++.||+|+-... .. ..++.+.+.|+++ |+++..
T Consensus 114 ~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 156 (194)
T d1dusa_ 114 NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV 156 (194)
T ss_dssp TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence 122337999986322 21 2467788889997 987653
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.50 E-value=0.15 Score=39.93 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=58.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+.+|.|+|.|.+|...++.++.+|. +|+..++........+..+.... .++.+.++ ..|+|.-+..
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~-------~~l~~~l~-----~sD~v~~~~p 109 (188)
T d2naca1 43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH-------ATREDMYP-----VCDVVTLNCP 109 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC-------SSHHHHGG-----GCSEEEECSC
T ss_pred cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccccccc-------CCHHHHHH-----hccchhhccc
Confidence 47899999999999999999999999 99999887655555555554211 11222221 3677766554
Q ss_pred ChH-----HHHHHHHHhccCCceEEEec
Q 017460 266 DTG-----MITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~-----~l~~~~~~l~~~~G~~v~~g 288 (371)
.+. .-...++.++++ ..+|.++
T Consensus 110 lt~~T~~li~~~~l~~mk~g-a~lIN~a 136 (188)
T d2naca1 110 LHPETEHMINDETLKLFKRG-AYIVNTA 136 (188)
T ss_dssp CCTTTTTCBSHHHHTTSCTT-EEEEECS
T ss_pred ccccchhhhHHHHHHhCCCC-CEEEecC
Confidence 321 124566777775 5555553
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.50 E-value=0.011 Score=51.03 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=54.1
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhH---HHHHHcCCc---eEeCCCCCCchHHHHHHHHhCC
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC---EKAKAFGVT---EFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~---~~~~~lg~~---~vi~~~~~~~~~~~~v~~~~~g 255 (371)
..+.+|++||-+|+|. |.+++.+|+ .|+++|++++.++.-. +.++..+.. .++... ..++ .....
T Consensus 29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~--~~~~-----~~~~~ 99 (316)
T d1oria_ 29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGK--VEEV-----ELPVE 99 (316)
T ss_dssp HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESC--TTTC-----CCSSS
T ss_pred cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEecc--HHHc-----ccccc
Confidence 3456899999999875 677766666 5877999999876422 222334432 222221 1111 01123
Q ss_pred CccEEEEcCCC---------hHHHHHHHHHhccCCceEE
Q 017460 256 GADYSFECIGD---------TGMITTALQSCCDGWGLAV 285 (371)
Q Consensus 256 g~dvVid~~g~---------~~~l~~~~~~l~~~~G~~v 285 (371)
.+|+|+..... ...+...-+.|+++ |+++
T Consensus 100 ~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii 137 (316)
T d1oria_ 100 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF 137 (316)
T ss_dssp CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence 78998753221 12344555789997 8875
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.47 E-value=0.59 Score=35.97 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=56.2
Q ss_pred EEEEEccChHHHHHHHHHHHc-CCCEEEEEcC-Chh-hHHHHHHcCCceEeCCCC----------CCchHHHHHHHHhCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKAR-GASRIIGVDT-NPE-KCEKAKAFGVTEFLNPND----------NNEPVQQVIKRITDG 255 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~-~~~-~~~~~~~lg~~~vi~~~~----------~~~~~~~~v~~~~~g 255 (371)
+|.|+|.|-+|+..++.+... .. .++++.. .+. ....+...+......... ....+.+.. .
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-----~ 76 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-----K 76 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-----H
T ss_pred EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh-----h
Confidence 588999999999999999876 45 6777643 322 333333334322111100 001111111 1
Q ss_pred CccEEEEcCCChHHHHHHHHHhccCCceEEEecC
Q 017460 256 GADYSFECIGDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 256 g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
++|+|+||+|.....+.+-..+..+ -+++..+.
T Consensus 77 ~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~ 109 (178)
T d1b7go1 77 TSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGG 109 (178)
T ss_dssp HCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTT
T ss_pred cCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECC
Confidence 5899999999866667777777765 57776654
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.44 E-value=0.14 Score=41.44 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=57.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH-HcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK-AFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
-.|.+|+|.|.|.+|..+++++...|+ ++++++.+..+.+.+. ..|.. .++.. ++..-.+|+.+=|
T Consensus 37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~-~~~~~-----------~~~~~~cDIl~Pc 103 (230)
T d1leha1 37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD-AVAPN-----------AIYGVTCDIFAPC 103 (230)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE-ECCGG-----------GTTTCCCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc-ccCCc-----------ccccccccEeccc
Confidence 468999999999999999999999999 9999999988877664 45654 22221 1122278888877
Q ss_pred CCChHHHHHHHHHhc
Q 017460 264 IGDTGMITTALQSCC 278 (371)
Q Consensus 264 ~g~~~~l~~~~~~l~ 278 (371)
.-....-+.....++
T Consensus 104 A~~~~I~~~~~~~l~ 118 (230)
T d1leha1 104 ALGAVLNDFTIPQLK 118 (230)
T ss_dssp SCSCCBSTTHHHHCC
T ss_pred ccccccChHHhhccC
Confidence 765432233444454
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.2 Score=41.94 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=44.8
Q ss_pred EEEEcc-ChHHHHHHHHHHHcCCC--EEEEEcCChhhHHH----HHHcC---Cc-e--EeCCCCCCchHHHHHHHHhCCC
Q 017460 190 VVIFGL-GTVGLSVAQGAKARGAS--RIIGVDTNPEKCEK----AKAFG---VT-E--FLNPNDNNEPVQQVIKRITDGG 256 (371)
Q Consensus 190 VlI~Ga-g~~G~~ai~la~~~G~~--~vi~~~~~~~~~~~----~~~lg---~~-~--vi~~~~~~~~~~~~v~~~~~gg 256 (371)
|||+|+ +++|.+.+..+...|++ .|..+.++.++.+. ++++. .. . .+|..+ .++....+.+...+.
T Consensus 5 vlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~g~ 83 (285)
T d1jtva_ 5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERVTEGR 83 (285)
T ss_dssp EEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTCTTSC
T ss_pred EEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc-hHhhhhhhhhccccc
Confidence 466785 89999999888888883 23344455443332 23332 22 1 235542 334444444444458
Q ss_pred ccEEEEcCCC
Q 017460 257 ADYSFECIGD 266 (371)
Q Consensus 257 ~dvVid~~g~ 266 (371)
+|+++++.|.
T Consensus 84 idilvnnag~ 93 (285)
T d1jtva_ 84 VDVLVCNAGL 93 (285)
T ss_dssp CSEEEECCCC
T ss_pred hhhhhhcccc
Confidence 9999998875
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.38 E-value=0.052 Score=42.80 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=54.9
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce------EeCCCC-CCchHHHHHHHHhCCCccEEE
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE------FLNPND-NNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~------vi~~~~-~~~~~~~~v~~~~~gg~dvVi 261 (371)
+|.|+|+|..|.+.+.++..-|. +|....++++..+.+.+-+... .+..+- -..++.+.+ .+.|+||
T Consensus 9 KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~-----~~ad~ii 82 (189)
T d1n1ea2 9 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY-----NGAEIIL 82 (189)
T ss_dssp EEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH-----TTCSCEE
T ss_pred eEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhcc-----CCCCEEE
Confidence 69999999999999888887787 9999999999888875433211 110000 001223322 2579999
Q ss_pred EcCCChHHHHHHHHHhc
Q 017460 262 ECIGDTGMITTALQSCC 278 (371)
Q Consensus 262 d~~g~~~~l~~~~~~l~ 278 (371)
-++++. .++..++.+.
T Consensus 83 iavPs~-~~~~~~~~~~ 98 (189)
T d1n1ea2 83 FVIPTQ-FLRGFFEKSG 98 (189)
T ss_dssp ECSCHH-HHHHHHHHHC
T ss_pred EcCcHH-HHHHHHHHHH
Confidence 999874 5666665543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.36 E-value=0.042 Score=46.84 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=32.3
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.....+|+|+|+|..|+.++..+...|. +|.+++.++
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~ 63 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE 63 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 4456799999999999999999988899 999998764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.34 E-value=0.31 Score=36.43 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=48.3
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
+|-|+|.|.+|.+.+.-+...|. .|++..+++.+...++..+... .+. .. +.++ ..|+||-|+....
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~-~~~---~~---e~~~-----~~diIi~~v~~~~ 68 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERARTVGV-TET---SE---EDVY-----SCPVVISAVTPGV 68 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHHHHHTC-EEC---CH---HHHH-----TSSEEEECSCGGG
T ss_pred EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHhhhcccc-ccc---HH---HHHh-----hcCeEEEEecCch
Confidence 57889999999999888888898 8888887776665554333321 121 11 1111 4778888887654
Q ss_pred HHHHHHHH
Q 017460 269 MITTALQS 276 (371)
Q Consensus 269 ~l~~~~~~ 276 (371)
..+.+...
T Consensus 69 ~~~~~~~~ 76 (152)
T d1i36a2 69 ALGAARRA 76 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 44444333
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=93.31 E-value=0.026 Score=49.00 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=50.1
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHH-HHHHc----CCceEe-CCCCCCchHHHHHHHHhCC-Cc
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE-KAKAF----GVTEFL-NPNDNNEPVQQVIKRITDG-GA 257 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~l----g~~~vi-~~~~~~~~~~~~v~~~~~g-g~ 257 (371)
+|++|||+|+ |.+|...++.+...|+ .|++++++..+.. .++.. +...+. |.+ +. +.+.+.... .+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~--d~---~~l~~~~~~~~~ 80 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIR--DQ---NKLLESIREFQP 80 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTT--CH---HHHHHHHHHHCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeecc--Ch---Hhhhhhhhhchh
Confidence 5799999986 9999999999999999 9999988765432 22221 222222 333 22 233334434 78
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+|+.+++.
T Consensus 81 ~~v~~~aa~ 89 (356)
T d1rkxa_ 81 EIVFHMAAQ 89 (356)
T ss_dssp SEEEECCSC
T ss_pred hhhhhhhcc
Confidence 999998864
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.30 E-value=0.17 Score=41.65 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=29.6
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhH
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKC 224 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~ 224 (371)
..||+|+ +++|.+.+..+...|+ +|+.++++.++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHH
Confidence 4577886 8999999999999999 999999886653
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.22 E-value=0.056 Score=43.99 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=33.4
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
...+++|+|+|+|+.|+.++..++..|+ .|.+++.+++
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~ 83 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK 83 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence 3567899999999999999999999999 9999987653
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.20 E-value=0.091 Score=38.06 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=46.5
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccE
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADY 259 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dv 259 (371)
...-.++.+|+|+|+|.+|+-+++.+..+|. +|.++.+.+.= ++. .+ ++...+.+++.... |+++
T Consensus 24 ~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~~~------l~~--~~-----d~~~~~~~~~~l~~~gv~~ 89 (123)
T d1nhpa2 24 KTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDRP------LGV--YL-----DKEFTDVLTEEMEANNITI 89 (123)
T ss_dssp HHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST------TTT--TC-----CHHHHHHHHHHHHTTTEEE
T ss_pred HhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecCcc------ccc--cc-----chhhHHHHHHHhhcCCeEE
Confidence 3344567899999999999999999999999 99999776421 110 01 34455555554444 6666
Q ss_pred EEEc
Q 017460 260 SFEC 263 (371)
Q Consensus 260 Vid~ 263 (371)
.+++
T Consensus 90 ~~~~ 93 (123)
T d1nhpa2 90 ATGE 93 (123)
T ss_dssp EESC
T ss_pred EeCc
Confidence 6643
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=93.17 E-value=0.018 Score=45.81 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=58.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCce--E--eCCCCCCchHHHHHHHHhCCCc
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE--F--LNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~--v--i~~~~~~~~~~~~v~~~~~gg~ 257 (371)
++.+||-+|+| .|..+..+++ .|+ +|++++.+++.++.++ +.+.+. + .|.. ... ..+.|
T Consensus 30 ~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~--~~~--------~~~~f 96 (198)
T d2i6ga1 30 APGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLN--TLT--------FDGEY 96 (198)
T ss_dssp CSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTT--TCC--------CCCCE
T ss_pred CCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecc--ccc--------ccccc
Confidence 34489999987 6777777775 588 9999999998877664 344432 1 1221 101 12379
Q ss_pred cEEEEcCC-----Ch---HHHHHHHHHhccCCceEEEec
Q 017460 258 DYSFECIG-----DT---GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 258 dvVid~~g-----~~---~~l~~~~~~l~~~~G~~v~~g 288 (371)
|+|+...- .. ..++.+.++|+++ |.++...
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~ 134 (198)
T d2i6ga1 97 DFILSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVA 134 (198)
T ss_dssp EEEEEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred cEEEEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 99986331 11 2567788889997 9887754
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.11 E-value=0.56 Score=36.08 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=60.9
Q ss_pred EEEEEccChHHHHHHHHHHHc-CCCEEEEE-cCChhhHHHH-HHcCCc---eEeCCCCCCchHHHHHHHHhCCCccEEEE
Q 017460 189 TVVIFGLGTVGLSVAQGAKAR-GASRIIGV-DTNPEKCEKA-KAFGVT---EFLNPNDNNEPVQQVIKRITDGGADYSFE 262 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~-G~~~vi~~-~~~~~~~~~~-~~lg~~---~vi~~~~~~~~~~~~v~~~~~gg~dvVid 262 (371)
++.|+|+|.+|...+..++.. ++ +++++ ++++++.+.+ ++++.. .+++ ++.+.+. +..+|+|+-
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~ll~---~~~iD~v~I 72 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIHG------SYESLLE---DPEIDALYV 72 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEES------SHHHHHH---CTTCCEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeecC------cHHHhhh---ccccceeee
Confidence 578999999998888777776 66 66654 6677765554 566642 2221 2333222 227999999
Q ss_pred cCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 263 CIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 263 ~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
++......+.+..++.. |.=+.+.-+
T Consensus 73 ~tp~~~h~~~~~~~l~~--g~~v~~EKP 98 (184)
T d1ydwa1 73 PLPTSLHVEWAIKAAEK--GKHILLEKP 98 (184)
T ss_dssp CCCGGGHHHHHHHHHTT--TCEEEECSS
T ss_pred cccchhhcchhhhhhhc--cceeecccc
Confidence 99887788888888886 565666443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.08 E-value=0.013 Score=49.03 Aligned_cols=93 Identities=19% Similarity=0.129 Sum_probs=58.8
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHhCC
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~~g 255 (371)
.+++|++||-.|+|. |..++.+|+.-++ +|++++.+++..+.+++ .|.. .++..+ . .++...
T Consensus 104 ~~~~g~~VlD~~aG~-G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D--~-------~~~~~~ 172 (260)
T d2frna1 104 VAKPDELVVDMFAGI-GHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD--N-------RDFPGE 172 (260)
T ss_dssp HCCTTCEEEETTCTT-TTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC--T-------TTCCCC
T ss_pred hcCCccEEEECcceE-cHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcc--h-------HHhccC
Confidence 368899999987642 4445556665334 99999999998777643 4542 234331 1 122233
Q ss_pred -CccEEE-EcC-CChHHHHHHHHHhccCCceEEEe
Q 017460 256 -GADYSF-ECI-GDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 256 -g~dvVi-d~~-g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+|.|+ +.. .+...+..++..++++ |.+...
T Consensus 173 ~~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~ 206 (260)
T d2frna1 173 NIADRILMGYVVRTHEFIPKALSIAKDG-AIIHYH 206 (260)
T ss_dssp SCEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEE
Confidence 688665 333 3345688899999997 876543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.99 E-value=0.075 Score=38.06 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=31.0
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.++++|+|+|.+|.=+++.+..+|. +|..+.+.+
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~ 55 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAG 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CCeEEEECCCccceeeeeeeccccc-EEEEEEecc
Confidence 4789999999999999999999999 999997765
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.87 E-value=0.069 Score=47.05 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=27.5
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~ 218 (371)
|.+|||+|+ |-+|...+..+...|+ .|++++
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD 32 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD 32 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence 678999986 9999999999999998 999986
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.87 E-value=0.24 Score=38.12 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=37.6
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV 232 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~ 232 (371)
+|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.+.
T Consensus 3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~ 45 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA 45 (178)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence 47889999999998888888899 99999999999998866554
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.29 Score=37.19 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=62.1
Q ss_pred hcchhhhhHHhHhhhhcC-CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCc
Q 017460 166 LLSCGLSAGLGAAWNVAD-ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNE 243 (371)
Q Consensus 166 ~~~~~~~~a~~~l~~~~~-~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~ 243 (371)
.+||.....+..+ +.-+ --.|++|+|+|. ..+|.-.+.++...|+ .|+.+.+...
T Consensus 16 ~~PcTp~aI~~lL-~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t~--------------------- 72 (166)
T d1b0aa1 16 LRPCTPRGIVTLL-ERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTK--------------------- 72 (166)
T ss_dssp SCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCS---------------------
T ss_pred CCCchHHHHHHHH-HHcCcccccceEEEEeccccccHHHHHHHHHhhc-cccccccccc---------------------
Confidence 4454444444444 3333 346999999995 6799999999999999 8887754332
Q ss_pred hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 244 PVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 244 ~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
+..+.++ .+|+|+-++|.+..+. -..++++ ..++.+|..
T Consensus 73 ~l~~~~~-----~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~ 111 (166)
T d1b0aa1 73 NLRHHVE-----NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN 111 (166)
T ss_dssp CHHHHHH-----HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred hhHHHHh-----hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence 2222222 3799999999875443 2356775 777777753
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.71 E-value=0.088 Score=40.96 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=33.8
Q ss_pred EEEEE-ccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH
Q 017460 189 TVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227 (371)
Q Consensus 189 ~VlI~-Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~ 227 (371)
+|.|+ |+|.+|.+.++.+...|+ +|++..|++++.+.+
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l 40 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAK 40 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 57888 679999999999999999 999999999987665
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.16 Score=44.05 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=43.7
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh-----hHHHHHHc----CCc-eEeCCCCCCchHHHHHHHHhCC-
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-----KCEKAKAF----GVT-EFLNPNDNNEPVQQVIKRITDG- 255 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~-----~~~~~~~l----g~~-~vi~~~~~~~~~~~~v~~~~~g- 255 (371)
+.|||+|+ |-+|...+..+...|. .|+++++... +.+.+... ... ..+.. +-.-.+.+.+...+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Dl~d~~~~~~~~~~~ 77 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG---DLSDTSNLTRILREV 77 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC---------------------CCEEECCC---CSSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEe---ecCCHHHHHHHHhcc
Confidence 57889986 9999999999988998 9999998543 22222111 111 12211 11123345555555
Q ss_pred CccEEEEcCCC
Q 017460 256 GADYSFECIGD 266 (371)
Q Consensus 256 g~dvVid~~g~ 266 (371)
.+|+|+.+.+-
T Consensus 78 ~~d~v~h~aa~ 88 (357)
T d1db3a_ 78 QPDEVYNLGAM 88 (357)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEEeecc
Confidence 88999998753
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=92.65 E-value=0.039 Score=44.70 Aligned_cols=93 Identities=16% Similarity=0.252 Sum_probs=60.7
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHH---cCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKA---RGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~---~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~ 253 (371)
++++.+||-+|+|. |..+..+++. .++ +|++++.+++-++.+++ .+.. ...+.. . ....
T Consensus 37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d--~-------~~~~ 105 (225)
T d1im8a_ 37 VTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND--I-------RHVE 105 (225)
T ss_dssp CCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC--T-------TTCC
T ss_pred cCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccch--h-------hccc
Confidence 67899999999764 5566666664 477 99999999998888865 2322 122211 1 1111
Q ss_pred CCCccEEEEcCCC--------hHHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADYSFECIGD--------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dvVid~~g~--------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
...+|+++-...- ...++...+.|+++ |.++...
T Consensus 106 ~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~ 147 (225)
T d1im8a_ 106 IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSE 147 (225)
T ss_dssp CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred cccceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeeccc
Confidence 1256776553321 13588999999998 9998764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.64 E-value=0.16 Score=40.83 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=65.9
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHH----HcCCceEeCCCCCCchHHHHHHHHh-
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAK----AFGVTEFLNPNDNNEPVQQVIKRIT- 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~lg~~~vi~~~~~~~~~~~~v~~~~- 253 (371)
...+..+.++||-+|.+ .|..++.+|+++.. .++++++.+++..+.++ +.|....+... ..+..+.+.++.
T Consensus 53 ~L~~~~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~--~Gda~e~l~~~~~ 129 (219)
T d2avda1 53 NLARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLR--LKPALETLDELLA 129 (219)
T ss_dssp HHHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEE--ESCHHHHHHHHHH
T ss_pred HHHHccCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEE--Eeehhhcchhhhh
Confidence 34556678899999864 37777888877631 39999999999877664 34553322221 223334443332
Q ss_pred ---CCCccEEEEcCCCh---HHHHHHHHHhccCCceEEEe
Q 017460 254 ---DGGADYSFECIGDT---GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ---~gg~dvVid~~g~~---~~l~~~~~~l~~~~G~~v~~ 287 (371)
.+.||+||--.... ..++.+++.|++| |.++.=
T Consensus 130 ~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~D 168 (219)
T d2avda1 130 AGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVL 168 (219)
T ss_dssp TTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred hcccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEe
Confidence 23799986544332 2477899999996 777654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.63 E-value=0.045 Score=44.78 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=28.9
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.|+|+|+|..|+.++..+...|.++|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 489999999999999999889975699998764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.62 E-value=0.075 Score=43.37 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=30.9
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
+.-.+|+|+|+|..|++++..+...|. +|.++++.
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD 38 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence 445689999999999999999999999 99999864
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.62 E-value=0.033 Score=40.56 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=44.4
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEc
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFEC 263 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~ 263 (371)
..++++|+|+|.+|+=.++.+..+|. +|.++.+++.-+ ..- +++..+.+.+.... |+++..++
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~~l------------~~~--d~~~~~~l~~~l~~~GI~i~~~~ 87 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASEIV------------PTM--DAEIRKQFQRSLEKQGMKFKLKT 87 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSSSS------------TTS--CHHHHHHHHHHHHHSSCCEECSE
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccccC------------chh--hhcchhhhhhhhhcccceEEcCC
Confidence 35799999999999999999999999 999998875321 111 34455555554444 66666543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.56 E-value=0.06 Score=44.57 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=29.2
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.|+|+|+|+.|++++.+++..|...|.++++++
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 689999999999999999999976888888765
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.42 E-value=0.6 Score=34.67 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=32.2
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhH
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKC 224 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~ 224 (371)
..+.+|.|+|+|.+|...+..+...|. .+++.++.++++.
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~ 44 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKA 44 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccc
Confidence 346789999999999988888877663 5899999988763
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=0.16 Score=41.57 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=31.0
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.+|+|+|+|++|-.++..+...|.+++..++.+.
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 57899999999999999999999999999987543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.26 E-value=0.08 Score=41.52 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=33.9
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA 227 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~ 227 (371)
.+|.|+|+|.+|...+.++...|+ +|+..+.+++.++.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~ 43 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG 43 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence 569999999999988888888899 999999999876654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.25 E-value=0.12 Score=37.49 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+..++++|+|+|.+|+=.++..+.+|. +|..+.+.+
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~ 59 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD 59 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence 335899999999999999999999999 999997754
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.077 Score=45.18 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=31.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
++..+|+|+|+|..|+.|+..+...|. +|.+++.++
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD 38 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence 445679999999999999999999999 999998764
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.23 E-value=0.054 Score=45.43 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=29.9
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
.|+|+|+|++|++++..++..|. +|.++++.++
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence 58999999999999999999999 9999988753
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.10 E-value=0.14 Score=43.83 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=28.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
+++||+|+ |-+|...+..+...|+ +|+++++.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~ 34 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR 34 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence 47899986 9999999999998999 99999874
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=92.02 E-value=0.16 Score=41.53 Aligned_cols=34 Identities=38% Similarity=0.514 Sum_probs=30.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT 219 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~ 219 (371)
-.|.+|+|.|.|.+|..+++++...|+ +|+++..
T Consensus 29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD 62 (242)
T d1v9la1 29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD 62 (242)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence 468999999999999999999999999 8888764
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.39 Score=36.65 Aligned_cols=95 Identities=15% Similarity=0.263 Sum_probs=63.5
Q ss_pred hhcchhhhhHHhHhhhhcCC-CCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCC
Q 017460 165 CLLSCGLSAGLGAAWNVADI-SKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNN 242 (371)
Q Consensus 165 a~~~~~~~~a~~~l~~~~~~-~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~ 242 (371)
+.+||.....+..+ +..++ -.|.+|+|+|. ..+|.-.+.++...|+ .|+.+.......
T Consensus 17 ~~~PcTp~aii~lL-~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~~l------------------ 76 (170)
T d1a4ia1 17 CFIPCTPKGCLELI-KETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHL------------------ 76 (170)
T ss_dssp CCCCHHHHHHHHHH-HTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH------------------
T ss_pred CCCCChHHHHHHHH-HHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEecccccH------------------
Confidence 45555555555544 44443 47899999995 6799999999999999 888886543222
Q ss_pred chHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 243 EPVQQVIKRITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 243 ~~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
.+.++ ..|+++-++|.+..+. -..++++ -.++.+|..
T Consensus 77 ---~~~~~-----~aDivi~a~G~~~~i~--~~~vk~g-~iviDvgi~ 113 (170)
T d1a4ia1 77 ---DEEVN-----KGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN 113 (170)
T ss_dssp ---HHHHT-----TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred ---HHHHh-----hccchhhccccccccc--cccccCC-CeEeccCcc
Confidence 11111 4789999998865443 2467775 777777754
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.89 E-value=0.084 Score=45.14 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
..+|+|+|||..|+.++..+...|. +|.+++.++
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence 5789999999999999999988898 999998765
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=91.83 E-value=0.86 Score=34.91 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=59.5
Q ss_pred EEEEEccChHHHH-HHHHHHHcCCC-EEE-EEcCChhhHHHH-HHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 189 TVVIFGLGTVGLS-VAQGAKARGAS-RII-GVDTNPEKCEKA-KAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 189 ~VlI~Gag~~G~~-ai~la~~~G~~-~vi-~~~~~~~~~~~~-~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+|.|+|+|..|.- .+...+..+-. +++ +.++++++.+.+ ++++...+++ ++.+.+. ...+|+|+-++
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~------~~~ell~---~~~id~v~I~t 75 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD------SYEELLE---SGLVDAVDLTL 75 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES------CHHHHHH---SSCCSEEEECC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee------eeecccc---ccccceeeccc
Confidence 6889999999864 46666655421 555 456777776654 5677655542 2333322 23799999999
Q ss_pred CChHHHHHHHHHhccCCceEEEecCC
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
....+.+.+..++.. |.-|.+.-+
T Consensus 76 p~~~h~~~~~~al~~--gk~V~~EKP 99 (181)
T d1zh8a1 76 PVELNLPFIEKALRK--GVHVICEKP 99 (181)
T ss_dssp CGGGHHHHHHHHHHT--TCEEEEESS
T ss_pred ccccccccccccccc--chhhhcCCC
Confidence 877777888888876 566666443
|
| >d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: GroES domain: Chaperonin-10 (GroES) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.76 E-value=0.18 Score=34.85 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.1
Q ss_pred eEEEEEeeCCCCC----------CCCCCCEEEee
Q 017460 64 CCRIVESVGPGVT----------EFNEGEHVLTV 87 (371)
Q Consensus 64 ~~G~V~~~G~~v~----------~~~~Gd~V~~~ 87 (371)
..|+|+++|++.. .+++||+|+..
T Consensus 38 ~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~ 71 (99)
T d1p3ha_ 38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYS 71 (99)
T ss_dssp EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEE
T ss_pred eEEEEEEECCceEcCCCCEecCCeeecCCEEEEc
Confidence 6899999999742 37899999986
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=91.75 E-value=0.46 Score=34.40 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=45.2
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEE-cCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGV-DTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~-~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|.|+|+ |-+|++..++++..|. .++.. +.+.. ..+ .++|+|||.+..
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~~-----------~~~------------------~~~DVvIDFS~p 51 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNGV-----------EEL------------------DSPDVVIDFSSP 51 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTEE-----------EEC------------------SCCSEEEECSCG
T ss_pred EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCcH-----------HHh------------------ccCCEEEEecCH
Confidence 5889996 9999999999999998 55543 22210 000 146888887765
Q ss_pred hHHHHHHHHHhccCCceEEEecCCC
Q 017460 267 TGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 267 ~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
. .+...++..... +.=+.+|.++
T Consensus 52 ~-~~~~~l~~~~~~-~~p~ViGTTG 74 (128)
T d1vm6a3 52 E-ALPKTVDLCKKY-RAGLVLGTTA 74 (128)
T ss_dssp G-GHHHHHHHHHHH-TCEEEECCCS
T ss_pred H-HHHHHHHHHHhc-CCCEEEEcCC
Confidence 3 444445544443 6666676664
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.75 E-value=0.11 Score=43.10 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=28.4
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+|||+|+ |.+|...+..++..|+ .|+++++++
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~ 35 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQD 35 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechh
Confidence 6899986 9999999999999999 999998753
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.75 E-value=0.15 Score=37.34 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.++++.+|+|+|+|.+|+=++..+..+|. +|..+++.+
T Consensus 31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~ 68 (133)
T d1q1ra2 31 QLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA 68 (133)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred hhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence 35668999999999999999999999999 999998765
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.042 Score=44.77 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=46.0
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcCCce-EeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVTE-FLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~~~-vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+.+|||+|+ |.+|...++.+...|. ++|++++|++.+...-..-.... +.|.. + .+.+.... .++|+++.+
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~----~-~~~~~~~~-~~~d~vi~~ 87 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFE----K-LDDYASAF-QGHDVGFCC 87 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGG----G-GGGGGGGG-SSCSEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccc----c-cccccccc-ccccccccc
Confidence 478999997 9999999998877774 58999988765432211111221 22332 1 11222222 279999999
Q ss_pred CCC
Q 017460 264 IGD 266 (371)
Q Consensus 264 ~g~ 266 (371)
.|.
T Consensus 88 ~~~ 90 (232)
T d2bkaa1 88 LGT 90 (232)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=91.67 E-value=0.19 Score=42.96 Aligned_cols=96 Identities=18% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCce--EeCCCCCCchHHHHHHHHh-CC-C
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVTE--FLNPNDNNEPVQQVIKRIT-DG-G 256 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~~--vi~~~~~~~~~~~~v~~~~-~g-g 256 (371)
.+|++||=.++|+ |..++.+|+ |+.+|++++.++...+.++ ..|.+. ++.. +..+.++.+. .+ .
T Consensus 144 ~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~-----d~~~~~~~~~~~~~~ 215 (318)
T d1wxxa2 144 FRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEA-----NAFDLLRRLEKEGER 215 (318)
T ss_dssp CCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEES-----CHHHHHHHHHHTTCC
T ss_pred hCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeec-----cHHHHhhhhHhhhcC
Confidence 4689999887644 333445553 3349999999999888774 356532 2322 2333333332 23 8
Q ss_pred ccEEEEcCC-----C----------hHHHHHHHHHhccCCceEEEecC
Q 017460 257 ADYSFECIG-----D----------TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 257 ~dvVid~~g-----~----------~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
||+|+--.+ . ...+..++++|++| |.++.+.-
T Consensus 216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~sc 262 (318)
T d1wxxa2 216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASC 262 (318)
T ss_dssp EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 999874211 1 12456778889997 99887643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.35 E-value=0.57 Score=39.52 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=62.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeCCCC---CCchHHHHHHHHhCCCccE
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNPND---NNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~~~~---~~~~~~~~v~~~~~gg~dv 259 (371)
...++|||+|.|. |..+-.++++....+|.+++.+++=.+.++++-.. ..++... ...+..+.+++ +...+|+
T Consensus 105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDv 182 (312)
T d2b2ca1 105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDV 182 (312)
T ss_dssp SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEE
T ss_pred CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCCE
Confidence 4567999998765 44455777777766999999999998888775321 1111100 01233444543 3348999
Q ss_pred EEE-cCC---C------hHHHHHHHHHhccCCceEEEec
Q 017460 260 SFE-CIG---D------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 260 Vid-~~g---~------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
||- ... . .+-++.+.++|+++ |.++.-+
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~ 220 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG 220 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEec
Confidence 873 221 1 12356777889997 9988764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=91.25 E-value=1.5 Score=33.14 Aligned_cols=96 Identities=19% Similarity=0.177 Sum_probs=54.6
Q ss_pred cCCCCCCEEEEEcc--ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHH----HcCCc-eEeCCCCCCchHHHHHHHHhC
Q 017460 182 ADISKGSTVVIFGL--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAK----AFGVT-EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 182 ~~~~~~~~VlI~Ga--g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~lg~~-~vi~~~~~~~~~~~~v~~~~~ 254 (371)
..+.+|.+||=.++ |.+|+ . |...|+ +++.++.+++..+.++ .+|.. .+.... ...+... ....+
T Consensus 37 ~~~~~g~~vLDl~~G~G~~~i---~-a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~--~d~~~~~-~~~~~ 108 (171)
T d1ws6a1 37 LRYPRRGRFLDPFAGSGAVGL---E-AASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALP--VEVFLPE-AKAQG 108 (171)
T ss_dssp HHCTTCCEEEEETCSSCHHHH---H-HHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSC--HHHHHHH-HHHTT
T ss_pred ccccCCCeEEEeccccchhhh---h-hhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeee--hhccccc-ccccC
Confidence 35678899998854 55554 3 334688 8999999999877663 45653 344332 2222221 12222
Q ss_pred CCccEEEE-c---CCChHHHHHHHH--HhccCCceEEE
Q 017460 255 GGADYSFE-C---IGDTGMITTALQ--SCCDGWGLAVT 286 (371)
Q Consensus 255 gg~dvVid-~---~g~~~~l~~~~~--~l~~~~G~~v~ 286 (371)
..||+||- . .+....+...+. .++++ |.++.
T Consensus 109 ~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi 145 (171)
T d1ws6a1 109 ERFTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL 145 (171)
T ss_dssp CCEEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred CccceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence 38999974 2 222234444433 47775 76654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.23 E-value=0.67 Score=35.61 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=50.1
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhh--HHHHHHcCCce---------EeCCCCCCchHHHHHHHHhCCCc
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEK--CEKAKAFGVTE---------FLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~--~~~~~~lg~~~---------vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
+|.|+|+|..|.+.+..+..-|. +|....+..++ .+.+.+..-.. .+.. ..+..+.+ ...
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~---~~~~~~~~-----~~a 72 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFW---PEQLEKCL-----ENA 72 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEEC---GGGHHHHH-----TTC
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccc---cccHHHHH-----hcc
Confidence 68899999999998888877787 99998774333 33333221110 0101 12222222 268
Q ss_pred cEEEEcCCChHHHHHHHHHhcc
Q 017460 258 DYSFECIGDTGMITTALQSCCD 279 (371)
Q Consensus 258 dvVid~~g~~~~l~~~~~~l~~ 279 (371)
|+|+-++... .++..++.+.+
T Consensus 73 d~Ii~avps~-~~~~~~~~l~~ 93 (180)
T d1txga2 73 EVVLLGVSTD-GVLPVMSRILP 93 (180)
T ss_dssp SEEEECSCGG-GHHHHHHHHTT
T ss_pred chhhcccchh-hhHHHHHhhcc
Confidence 9999999874 56666665544
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=91.21 E-value=0.1 Score=39.19 Aligned_cols=84 Identities=13% Similarity=-0.014 Sum_probs=52.0
Q ss_pred EEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChHHH
Q 017460 191 VIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTGMI 270 (371)
Q Consensus 191 lI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~~l 270 (371)
-++|+|.+|.+.+..++..+. .+.+..|+.++.+.+.+.+.....+.. +. -...|+||-|+... .+
T Consensus 3 gfIG~G~mg~~l~~~L~~~~~-~~~v~~R~~~~~~~l~~~~~~~~~~~~---~~---------~~~~DiVil~v~d~-~i 68 (153)
T d2i76a2 3 NFVGTGTLTRFFLECLKDRYE-IGYILSRSIDRARNLAEVYGGKAATLE---KH---------PELNGVVFVIVPDR-YI 68 (153)
T ss_dssp EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSC---CC---------CC---CEEECSCTT-TH
T ss_pred EEEeCcHHHHHHHHHHHhCCC-EEEEEeCChhhhcchhhcccccccchh---hh---------hccCcEEEEeccch-hh
Confidence 467999999998876654333 445788999999888776553333221 10 01579999999874 67
Q ss_pred HHHHHHhccCCce-EEEecC
Q 017460 271 TTALQSCCDGWGL-AVTLGV 289 (371)
Q Consensus 271 ~~~~~~l~~~~G~-~v~~g~ 289 (371)
...+..++.. +. ++.+..
T Consensus 69 ~~v~~~l~~~-~~ivi~~s~ 87 (153)
T d2i76a2 69 KTVANHLNLG-DAVLVHCSG 87 (153)
T ss_dssp HHHHTTTCCS-SCCEEECCS
T ss_pred hHHHhhhccc-ceeeeeccc
Confidence 8888888754 44 455543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.094 Score=42.24 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=28.8
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
-|+|+|+|..|+.++..+...|. +|.++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGK-KVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence 38899999999999999988998 999999875
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=91.19 E-value=0.23 Score=41.16 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHHcCCc-eE-e-CCCCCCchHHHHHHHHhCCCccE
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKAFGVT-EF-L-NPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~lg~~-~v-i-~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
..++.+||-+|+|. |..+..+++.. +. +++.++.++...+.+++.... .. . |.. +.+ +.++.+|+
T Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~~--~l~-------~~~~sfD~ 150 (268)
T d1p91a_ 82 DDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASSH--RLP-------FSDTSMDA 150 (268)
T ss_dssp CTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCTT--SCS-------BCTTCEEE
T ss_pred CCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeehh--hcc-------CCCCCEEE
Confidence 46678999998764 66666777765 56 999999999998888764432 12 2 222 111 12237999
Q ss_pred EEEcCCChHHHHHHHHHhccCCceEEEec
Q 017460 260 SFECIGDTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 260 Vid~~g~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
|+....- ..+++..+.|+++ |.++...
T Consensus 151 v~~~~~~-~~~~e~~rvLkpg-G~l~~~~ 177 (268)
T d1p91a_ 151 IIRIYAP-CKAEELARVVKPG-GWVITAT 177 (268)
T ss_dssp EEEESCC-CCHHHHHHHEEEE-EEEEEEE
T ss_pred EeecCCH-HHHHHHHHHhCCC-cEEEEEe
Confidence 9976543 4688999999998 9988764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.16 E-value=0.16 Score=36.17 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=30.6
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+++++|+|+|.+|.=+++.+..+|+ +|..+.+.+
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE 54 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence 4789999999999999999999999 999997764
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=91.13 E-value=0.094 Score=43.08 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=29.5
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
.|+|+|+|+.|++++..+...|. +|.++++++.
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~ 38 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK 38 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 48899999999999998888998 9999998764
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.11 E-value=0.76 Score=33.00 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=59.8
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCChH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGDTG 268 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~~~ 268 (371)
.++|.|.|.+|+..+..++ |. .+++++.++++.+.++..|...+.-. ..-.+.+++..=..++.++-++.+..
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~Gd----~~~~~~L~~a~i~~A~~vi~~~~~d~ 74 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVHGD----PTRVSDLEKANVRGARAVIVNLESDS 74 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEESC----TTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCccccccc----cCCHHHHHHhhhhcCcEEEEeccchh
Confidence 5889999999998877764 44 67788899999999988888655421 12233444432237889988887643
Q ss_pred H---HHHHHHHhccCCceEEEe
Q 017460 269 M---ITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 269 ~---l~~~~~~l~~~~G~~v~~ 287 (371)
. +-...+.+.+. .+++..
T Consensus 75 ~n~~~~~~~r~~~~~-~~iia~ 95 (129)
T d2fy8a1 75 ETIHCILGIRKIDES-VRIIAE 95 (129)
T ss_dssp HHHHHHHHHHHHCSS-SCEEEE
T ss_pred hhHHHHHHHHHHCCC-ceEEEE
Confidence 2 23444556664 555554
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=91.08 E-value=0.11 Score=41.08 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=55.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...+++++.+|+ +|++.++...+. ....+.. .++.+.+. ..|+|.-++.
T Consensus 44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-------~~~~~~~----~~l~~l~~-----~~D~v~~~~p 106 (199)
T d1dxya1 44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKG-------DHPDFDY----VSLEDLFK-----QSDVIDLHVP 106 (199)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSS-------CCTTCEE----CCHHHHHH-----HCSEEEECCC
T ss_pred cceeeeeeecccccccccccccccce-eeeccCCccchh-------hhcchhH----HHHHHHHH-----hcccceeeec
Confidence 36899999999999999999999999 999998764331 0000111 12333332 2577776654
Q ss_pred ChH-H----HHHHHHHhccCCceEEEec
Q 017460 266 DTG-M----ITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~-~----l~~~~~~l~~~~G~~v~~g 288 (371)
.+. + -...++.++++ ..+|..+
T Consensus 107 lt~~T~~li~~~~l~~mk~~-a~lIN~a 133 (199)
T d1dxya1 107 GIEQNTHIINEAAFNLMKPG-AIVINTA 133 (199)
T ss_dssp CCGGGTTSBCHHHHHHSCTT-EEEEECS
T ss_pred ccccccccccHHHhhccCCc-eEEEecc
Confidence 322 1 24667788886 6666664
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.24 Score=35.77 Aligned_cols=87 Identities=20% Similarity=0.376 Sum_probs=54.3
Q ss_pred CCCEEEEEccCh--HH---------HHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHh
Q 017460 186 KGSTVVIFGLGT--VG---------LSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 186 ~~~~VlI~Gag~--~G---------~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~ 253 (371)
.-++|||+|+|+ +| .-|+..++..|+ +++.+..+++....-.++ +++++ ..- ..+.+.+..
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfePl-----t~e~v~~Ii 78 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEPI-----HWEVVRKII 78 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSCC-----CHHHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeecC-----CHHHHHHHH
Confidence 347899999875 33 334555566799 999999999875443332 23333 221 122333333
Q ss_pred CC-CccEEEEcCCChHHHHHHHHHhcc
Q 017460 254 DG-GADYSFECIGDTGMITTALQSCCD 279 (371)
Q Consensus 254 ~g-g~dvVid~~g~~~~l~~~~~~l~~ 279 (371)
.. +.|.|+-..|+-..++.++++...
T Consensus 79 ~~E~pd~il~~~GGQtalnla~~L~~~ 105 (127)
T d1a9xa3 79 EKERPDAVLPTMGGQTALNCALELERQ 105 (127)
T ss_dssp HHHCCSEEECSSSHHHHHHHHHHHHHT
T ss_pred HHhCcCCeEEEeeeehHhHHHHHHHHc
Confidence 33 789999889886667777776554
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=90.82 E-value=0.078 Score=44.18 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=29.0
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+|+|+|+|..|+.++..+...|. +|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 58999999999999999999999 999998754
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=90.80 E-value=0.58 Score=35.61 Aligned_cols=98 Identities=22% Similarity=0.289 Sum_probs=59.9
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcC---ChhhHHHHHHcCC-------ce-------EeCCCC----CCchHHH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDT---NPEKCEKAKAFGV-------TE-------FLNPND----NNEPVQQ 247 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~lg~-------~~-------vi~~~~----~~~~~~~ 247 (371)
+|.|+|-|-+|+++...+...+. .++++.. +.+....+-++-- +. .++.+. ...+ .+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~-p~ 79 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMK-PE 79 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSS-GG
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCC-hH
Confidence 57899999999999999988888 6776643 3345555533211 10 111100 0000 11
Q ss_pred HHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 248 VIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 248 ~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
++.+ .. ++|+||||+|.-...+.+...+..+ -+-|.+..+.
T Consensus 80 ~i~W--~~~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP~ 121 (169)
T d1dssg1 80 NIPW--SKAGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAPS 121 (169)
T ss_dssp GCCH--HHHTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSCC
T ss_pred HCCc--cccCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCCc
Confidence 1111 13 8999999999866677888888876 6666665543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=90.79 E-value=0.11 Score=42.42 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=28.2
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
|+|+|+|+.|++++..+...|. +|+++++++.
T Consensus 5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK 36 (251)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence 7899999999998888888899 9999987653
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=90.76 E-value=0.33 Score=40.32 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=63.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC-----C-----ceEeCCCCCCchHHHHHHHHhC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG-----V-----TEFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg-----~-----~~vi~~~~~~~~~~~~v~~~~~ 254 (371)
.+.++|||+|.|. |.++..++++.+..+|.+++.+++=.+.++++- + ..++.. +....+++ +.
T Consensus 74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~-----D~~~~l~~-~~ 146 (274)
T d1iy9a_ 74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD-----DGFMHIAK-SE 146 (274)
T ss_dssp SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES-----CSHHHHHT-CC
T ss_pred CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec-----hHHHHHhh-cC
Confidence 4568999998764 555667777777779999999999888887642 2 012211 22233333 23
Q ss_pred CCccEEE-EcCC---------ChHHHHHHHHHhccCCceEEEec
Q 017460 255 GGADYSF-ECIG---------DTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 255 gg~dvVi-d~~g---------~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
..+|+|| |... +.+-++.+.++|+++ |.++.-.
T Consensus 147 ~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~ 189 (274)
T d1iy9a_ 147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT 189 (274)
T ss_dssp SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEec
Confidence 3899985 4322 223577888899997 9988754
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.72 E-value=0.18 Score=43.66 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=46.1
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCce--EeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 184 ISKGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTE--FLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 184 ~~~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~--vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
+.++.+|||+|+ |.+|...+..+...|. .|+++++...... ........ ..|.. +.. .+.+.. .++|.|
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~-~~~~~~~~~~~~D~~----~~~-~~~~~~-~~~d~V 83 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHM-TEDMFCDEFHLVDLR----VME-NCLKVT-EGVDHV 83 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSS-CGGGTCSEEEECCTT----SHH-HHHHHH-TTCSEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccch-hhhcccCcEEEeech----hHH-HHHHHh-hcCCeE
Confidence 346889999985 9999999999999998 9999875433211 11111112 22332 222 223222 279999
Q ss_pred EEcCC
Q 017460 261 FECIG 265 (371)
Q Consensus 261 id~~g 265 (371)
+.+.+
T Consensus 84 ih~a~ 88 (363)
T d2c5aa1 84 FNLAA 88 (363)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98774
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.21 Score=36.08 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=31.0
Q ss_pred CCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.++++|+|+|.+|+=.+..++.+|. +|..+.+++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD 55 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence 3789999999999999999999999 999998865
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.60 E-value=0.18 Score=39.24 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=56.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.|.+|.|+|.|.+|...+++++.+|+ +|++.++++.. +..... .++.+.+ . ..|+|+-+..
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~-------~~~~~~------~~l~ell----~-~sDiv~~~~p 101 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKE-------GPWRFT------NSLEEAL----R-EARAAVCALP 101 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCC-------SSSCCB------SCSHHHH----T-TCSEEEECCC
T ss_pred cCceEEEeccccccccceeeeecccc-ccccccccccc-------cceeee------echhhhh----h-ccchhhcccc
Confidence 47899999999999999999999999 99999876532 111111 1122222 1 4788877665
Q ss_pred ChH-H----HHHHHHHhccCCceEEEec
Q 017460 266 DTG-M----ITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~-~----l~~~~~~l~~~~G~~v~~g 288 (371)
.+. + -...++.++++ ..+|.++
T Consensus 102 l~~~t~~li~~~~l~~mk~~-ailIN~~ 128 (181)
T d1qp8a1 102 LNKHTRGLVKYQHLALMAED-AVFVNVG 128 (181)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred cccccccccccceeeecccc-ceEEecc
Confidence 321 1 24667778886 7777765
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.59 E-value=0.56 Score=40.03 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=45.0
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh----hhHHHH---HHcCCceE-eCCCCCCchHHHHHHHHhCC-Cc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP----EKCEKA---KAFGVTEF-LNPNDNNEPVQQVIKRITDG-GA 257 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~----~~~~~~---~~lg~~~v-i~~~~~~~~~~~~v~~~~~g-g~ 257 (371)
+.|||+|+ |-+|...+..+...|. +|+++++.. +..... ..-+...+ .|.. + .+.+...... ++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d---~~~l~~~~~~~~~ 75 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLC--D---RKGLEKVFKEYKI 75 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTT--C---HHHHHHHHHHSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEECCCCcchhHHHhHHhhcccCCeEEEeecC--C---HHHHHHHHhccCC
Confidence 46899986 9999999998888998 999986421 122222 22233322 2333 2 2233333334 89
Q ss_pred cEEEEcCCC
Q 017460 258 DYSFECIGD 266 (371)
Q Consensus 258 dvVid~~g~ 266 (371)
|+||.+.+.
T Consensus 76 d~VihlAa~ 84 (347)
T d1z45a2 76 DSVIHFAGL 84 (347)
T ss_dssp CEEEECCSC
T ss_pred CEEEEcccc
Confidence 999998763
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.53 E-value=0.21 Score=40.67 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc-eEeCCCCCCchHHHHHHHHh-CCCcc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT-EFLNPNDNNEPVQQVIKRIT-DGGAD 258 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~-~vi~~~~~~~~~~~~v~~~~-~gg~d 258 (371)
.++.+||=+|+|. |..+..+++ .|. +|++++.+++.++.+++ .|.. .++..+ +..+. .+.||
T Consensus 36 ~~~~~vLDiGCG~-G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d---------~~~~~~~~~fD 103 (246)
T d1y8ca_ 36 LVFDDYLDLACGT-GNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD---------ISNLNINRKFD 103 (246)
T ss_dssp CCTTEEEEETCTT-STTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCC---------GGGCCCSCCEE
T ss_pred CCCCeEEEEeCcC-CHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeeccc---------hhhhccccccc
Confidence 4467899999873 666666665 477 99999999998777744 3432 233221 11222 33899
Q ss_pred EEEEcCCC------h----HHHHHHHHHhccCCceEEE
Q 017460 259 YSFECIGD------T----GMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 259 vVid~~g~------~----~~l~~~~~~l~~~~G~~v~ 286 (371)
+|+-..+. . ..++.+.+.|+++ |.++.
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~ 140 (246)
T d1y8ca_ 104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF 140 (246)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred ccceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence 99854321 1 1467778889997 98874
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.36 Score=41.16 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=45.1
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcC----ChhhHHHHHH---cCCceE-eCCCCCCchHHHHHHHHhCC-Ccc
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDT----NPEKCEKAKA---FGVTEF-LNPNDNNEPVQQVIKRITDG-GAD 258 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~----~~~~~~~~~~---lg~~~v-i~~~~~~~~~~~~v~~~~~g-g~d 258 (371)
+|||+|+ |.+|...+..+...|. .|+++++ ........+. -++..+ .|.. +. +.+.+.... ++|
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~---~~l~~~~~~~~~d 75 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR--NE---ALMTEILHDHAID 75 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTT--CH---HHHHHHHHHTTCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecC--CH---HHHHHHHhccCCC
Confidence 6999986 9999999999999998 8999864 2222222222 233322 2433 22 234444333 899
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
+||.+.+
T Consensus 76 ~ViHlAa 82 (338)
T d1udca_ 76 TVIHFAG 82 (338)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.38 E-value=0.043 Score=47.39 Aligned_cols=93 Identities=27% Similarity=0.299 Sum_probs=52.2
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc---eEeCCCCCCchHHHHHHHHhC
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT---EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~---~vi~~~~~~~~~~~~v~~~~~ 254 (371)
....+|++||-+|+|. |.+++.+|+ .|+++|++++.++ ..+.+ ++.+.. .++..+ ..++ .+..
T Consensus 34 ~~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~--~~~l-----~~~~ 103 (328)
T d1g6q1_ 34 KDLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGK--LEDV-----HLPF 103 (328)
T ss_dssp HHHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESC--TTTS-----CCSS
T ss_pred cccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEee--hhhc-----cCcc
Confidence 3456799999999874 565654444 6777999999876 23333 444432 223221 1111 1122
Q ss_pred CCccEEEEcCC-----Ch----HHHHHHHHHhccCCceEE
Q 017460 255 GGADYSFECIG-----DT----GMITTALQSCCDGWGLAV 285 (371)
Q Consensus 255 gg~dvVid~~g-----~~----~~l~~~~~~l~~~~G~~v 285 (371)
..+|+|+...- .. ..+...-+.|+++ |.++
T Consensus 104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii 142 (328)
T d1g6q1_ 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF 142 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred cceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence 37999876321 11 1233344678997 8764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=90.30 E-value=1.2 Score=34.96 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=60.5
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceE--eCCCCCCchHHHHHHHHhCCCccEEE
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEF--LNPNDNNEPVQQVIKRITDGGADYSF 261 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~v--i~~~~~~~~~~~~v~~~~~gg~dvVi 261 (371)
..||=+|+|. |..++.+|+..--..+++++.++.....+ ++.|.+.+ +... ...+ ...+..+.+|.|+
T Consensus 31 PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~D--a~~l---~~~~~~~~~d~v~ 104 (204)
T d2fcaa1 31 PIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID--ADTL---TDVFEPGEVKRVY 104 (204)
T ss_dssp CEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCC--GGGH---HHHCCTTSCCEEE
T ss_pred ceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccc--hhhh---hcccCchhhhccc
Confidence 3456678875 78888888876333999999999877665 45676533 3221 2222 2223334788877
Q ss_pred EcCCCh--------------HHHHHHHHHhccCCceEEEe
Q 017460 262 ECIGDT--------------GMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 262 d~~g~~--------------~~l~~~~~~l~~~~G~~v~~ 287 (371)
-....+ ..++...+.|+++ |.+...
T Consensus 105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~ 143 (204)
T d2fcaa1 105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFK 143 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEE
T ss_pred cccccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEE
Confidence 554432 4678888999998 998775
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.28 E-value=0.13 Score=41.71 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=30.9
Q ss_pred CCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhh
Q 017460 187 GSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEK 223 (371)
Q Consensus 187 ~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~ 223 (371)
++++||+|+ +++|.+.++.+...|+ +|+.+++++++
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~ 37 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREG 37 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence 357889986 8999999999999999 99999988764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.10 E-value=0.48 Score=34.30 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=48.3
Q ss_pred hhhcCCCCCCEEEEE-ccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 179 WNVADISKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~-Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++.+++..-+.+++. ..-..-+++.++++.+|..++++...+++..+.++++|++.++++
T Consensus 58 l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p 118 (132)
T d1lssa_ 58 LEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSP 118 (132)
T ss_dssp HHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECH
T ss_pred hhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECH
Confidence 366777777766664 344566788899999999889999999999999999999999865
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.08 E-value=0.54 Score=38.99 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=45.0
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh-----hHHH---HHHcCCceEe-CCCCCCchHHHHHHHHhCCCc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE-----KCEK---AKAFGVTEFL-NPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~-----~~~~---~~~lg~~~vi-~~~~~~~~~~~~v~~~~~gg~ 257 (371)
.+|||+|+ |.+|...+..+...|. .|++++|++. +.+. +...+++.+. |.. + .+.+..... +.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~----d-~~~~~~~~~-~~ 76 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD----D-HQRLVDALK-QV 76 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSS----C-HHHHHHHHT-TC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCcccchhHHHHHhhhccCCcEEEEeecc----c-chhhhhhcc-Cc
Confidence 46999986 9999999998888998 8999988643 2222 3444554332 332 1 222333333 56
Q ss_pred cEEEEcCC
Q 017460 258 DYSFECIG 265 (371)
Q Consensus 258 dvVid~~g 265 (371)
+.++.+.+
T Consensus 77 ~~~~~~~~ 84 (312)
T d1qyda_ 77 DVVISALA 84 (312)
T ss_dssp SEEEECCC
T ss_pred chhhhhhh
Confidence 77777664
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=90.06 E-value=0.78 Score=34.85 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=56.2
Q ss_pred EEEEEccChHHHHHHHHHHHc---CCCEEEEEcC--ChhhHHHHHHcCC-------ce-------EeCCCC---CCchHH
Q 017460 189 TVVIFGLGTVGLSVAQGAKAR---GASRIIGVDT--NPEKCEKAKAFGV-------TE-------FLNPND---NNEPVQ 246 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~---G~~~vi~~~~--~~~~~~~~~~lg~-------~~-------vi~~~~---~~~~~~ 246 (371)
+|.|+|-|-+|+++...+... .. +|+++.. +.+....+-++-- .. +++.+. ....-.
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p 80 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred EEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence 688999999999999887643 35 7777633 3344444433211 10 111100 000001
Q ss_pred HHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 247 QVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 247 ~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+++.+ +. ++|+||||+|.-...+.+...+..+ -+-|.+..+.
T Consensus 81 ~~i~W--~~~gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSAP~ 123 (169)
T d1hdgo1 81 SKLPW--KDLGVDFVIESTGVFRNREKAELHLQAG-AKKVIITAPA 123 (169)
T ss_dssp GGSCH--HHHTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred hhCCc--cccCCCEEEEecceeccccchhhhccCC-CceEEEeccc
Confidence 11111 12 8999999999766667777788776 5555555443
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=89.93 E-value=1.3 Score=37.08 Aligned_cols=98 Identities=24% Similarity=0.278 Sum_probs=62.2
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc--CChhhHHHHHHcCCceEe-CCCC----------------
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD--TNPEKCEKAKAFGVTEFL-NPND---------------- 240 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~lg~~~vi-~~~~---------------- 240 (371)
+...+.++++|+...+|.-|++++..++.+|.+-++++. .+..|.+.++.+|+..+. +...
T Consensus 54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~ 133 (310)
T d1y7la1 54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD 133 (310)
T ss_dssp HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence 445567777766667899999999999999995444443 344677778889986543 1110
Q ss_pred ----------CCc--------hHHHHHHHHhCCCccEEEEcCCChHHHHHHHHHh
Q 017460 241 ----------NNE--------PVQQVIKRITDGGADYSFECIGDTGMITTALQSC 277 (371)
Q Consensus 241 ----------~~~--------~~~~~v~~~~~gg~dvVid~~g~~~~l~~~~~~l 277 (371)
++. ....++.+..++.+|.|+-++|+...+.-....+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~l 188 (310)
T d1y7la1 134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAI 188 (310)
T ss_dssp TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHH
T ss_pred cCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHH
Confidence 010 1223444445557899999998765555444444
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=89.92 E-value=0.29 Score=36.80 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=34.1
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHH
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~ 225 (371)
+++..+|.|+|+|.+|...+.++...+..+++.++.++++.+
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~ 45 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE 45 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence 355678999999999988888877778768999988876643
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.74 E-value=0.16 Score=37.97 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=29.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDT 219 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~ 219 (371)
+|.+|||+|+|.+|.--+..+...|+ +|+++..
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 58999999999999999999999999 8888843
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.71 E-value=0.2 Score=42.32 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=34.3
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh--hHHHHHHcCC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE--KCEKAKAFGV 232 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~lg~ 232 (371)
++|||+|+ |.+|...+..+...|+ +|+++++... +.+.++.++.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~ 47 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGI 47 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcc
Confidence 47999986 9999999998888899 9999987543 3455555554
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=89.69 E-value=0.6 Score=37.27 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=59.6
Q ss_pred EEEEEccChHHH-HHHHHHHHc-CCCEEE-EEcCChhhHHHH-HHcCCc--eEeCCCCCCchHHHHHHHHhCC-CccEEE
Q 017460 189 TVVIFGLGTVGL-SVAQGAKAR-GASRII-GVDTNPEKCEKA-KAFGVT--EFLNPNDNNEPVQQVIKRITDG-GADYSF 261 (371)
Q Consensus 189 ~VlI~Gag~~G~-~ai~la~~~-G~~~vi-~~~~~~~~~~~~-~~lg~~--~vi~~~~~~~~~~~~v~~~~~g-g~dvVi 261 (371)
+|.|+|+|..|. ..+...+.. +. +++ ++++++++.+.+ +++|.. .+..++ + +.++.+. .+|+|+
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~----d----~~ell~~~~iD~V~ 105 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYS----N----FDKIAKDPKIDAVY 105 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSS----S----GGGGGGCTTCCEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccC----c----hhhhcccccceeee
Confidence 678999999886 344444444 67 666 556777776554 667763 232232 1 2333444 899999
Q ss_pred EcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 262 ECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 262 d~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
-++....+.+.+.+++.. |.-+.+.-+
T Consensus 106 I~tp~~~H~~~~~~al~~--gk~v~~EKP 132 (221)
T d1h6da1 106 IILPNSLHAEFAIRAFKA--GKHVMCEKP 132 (221)
T ss_dssp ECSCGGGHHHHHHHHHHT--TCEEEECSS
T ss_pred eccchhhhhhHHHHhhhc--chhhhcCCC
Confidence 999887778888888886 666666543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=89.59 E-value=0.26 Score=40.47 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=30.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~ 218 (371)
-+|.+|+|.|.|.+|..+++++...|+ +|+++.
T Consensus 34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs 66 (255)
T d1bgva1 34 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS 66 (255)
T ss_dssp STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence 468899999999999999999999999 888874
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.58 E-value=0.63 Score=39.58 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=29.7
Q ss_pred CCEEEEEccC---hHHHHHHHHHHHcCCCEEEEEcCChhhHH
Q 017460 187 GSTVVIFGLG---TVGLSVAQGAKARGASRIIGVDTNPEKCE 225 (371)
Q Consensus 187 ~~~VlI~Gag---~~G~~ai~la~~~G~~~vi~~~~~~~~~~ 225 (371)
++..||+|+| ++|.+.++.+...|+ +|+.+.+++....
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~~ 42 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNI 42 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHHH
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhhh
Confidence 4667888843 899999999999999 8888877665433
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=89.58 E-value=0.3 Score=34.80 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=49.0
Q ss_pred CCEEEEEccChH--H---------HHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEe-CCCCCCchHHHHHHHHhC
Q 017460 187 GSTVVIFGLGTV--G---------LSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFL-NPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 187 ~~~VlI~Gag~~--G---------~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi-~~~~~~~~~~~~v~~~~~ 254 (371)
.++|||+|+|+. | .-++.-++..|+ +++.+..+++....-.++ +++++ ..- ..+.+.+...
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVstd~d~-aD~lYfepl-----t~e~v~~Ii~ 76 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVSTDYDT-SDRLYFEPV-----TLEDVLEIVR 76 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTTSTTS-SSEEECCCC-----SHHHHHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhcChhh-cCceEEccC-----CHHHHHHHHH
Confidence 468999998753 3 344555567799 999999998765332222 23332 221 1222333332
Q ss_pred C-CccEEEEcCCChHHHHHHHHHhc
Q 017460 255 G-GADYSFECIGDTGMITTALQSCC 278 (371)
Q Consensus 255 g-g~dvVid~~g~~~~l~~~~~~l~ 278 (371)
. +.|.|+-..|+-..++.+.++-+
T Consensus 77 ~E~p~~ii~~~GGQtalnla~~L~~ 101 (121)
T d1a9xa4 77 IEKPKGVIVQYGGQTPLKLARALEA 101 (121)
T ss_dssp HHCCSEEECSSSTHHHHTTHHHHHH
T ss_pred HhCCCEEEeehhhhhHHHHHHHHHH
Confidence 3 67788877877555555554433
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.55 E-value=1.4 Score=32.37 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=45.2
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcCCc-----e-EeCCCCCCchHHHHHHHHhCCCccEE
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVT-----E-FLNPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~~-----~-vi~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
+|.|+|| |.+|...+.++...|. ++++.++.++.+.+.+.-..+. . .+. ..++.+.+ .+.|+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~----~~~~~~~~-----~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLG----PEQLPDCL-----KGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEES----GGGHHHHH-----TTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEc----CCChHHHh-----CCCCEE
Confidence 6889996 9999999998888875 6888898877654443222221 1 121 12333333 268999
Q ss_pred EEcCCC
Q 017460 261 FECIGD 266 (371)
Q Consensus 261 id~~g~ 266 (371)
+-+.|.
T Consensus 73 Vitag~ 78 (144)
T d1mlda1 73 VIPAGV 78 (144)
T ss_dssp EECCSC
T ss_pred EECCCc
Confidence 988874
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.16 Score=39.10 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=27.5
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
.|+|+|+|+.|+.|+..+...|. +|.++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~-~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGI-RTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCC-eEEEEEEe
Confidence 47899999999999999999999 88888753
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=89.49 E-value=0.17 Score=42.84 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=29.9
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
-.|+|+|||..|++++..++..|. .|.+++..++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGR-SVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCC
Confidence 358999999999999999999999 8999987653
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=89.43 E-value=0.34 Score=36.96 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=57.4
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh--hhHHHHHHcCCc-------e-------EeCCCC---CCchHHHHH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP--EKCEKAKAFGVT-------E-------FLNPND---NNEPVQQVI 249 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~lg~~-------~-------vi~~~~---~~~~~~~~v 249 (371)
+|.|+|-|-+|+++.+.+...+. .++++.... +....+-++... . .++.+. ....-..++
T Consensus 2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i 80 (168)
T d2g82a1 2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI 80 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGC
T ss_pred EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHHC
Confidence 58899999999999998888888 777764322 333333332110 0 111000 000001111
Q ss_pred HHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 250 KRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 250 ~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
.+ .. ++|+|+||+|.-...+.+...+..+ -+-|.+..+.
T Consensus 81 ~W--~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~ 120 (168)
T d2g82a1 81 PW--AEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAPA 120 (168)
T ss_dssp CT--GGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred cc--cccCCceeEeccccccchHHhhhhhccc-cceeeecccc
Confidence 11 23 8999999999766667777888876 5555555443
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=89.43 E-value=0.56 Score=38.59 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=29.7
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
.+|||+|+ |.+|...+..+...|. +|+++++++.
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~ 38 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVREST 38 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCc
Confidence 57999996 9999999999988998 9999988654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.39 E-value=0.23 Score=37.70 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=29.8
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCC-EEEEEcCCh
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGAS-RIIGVDTNP 221 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~-~vi~~~~~~ 221 (371)
.|++|+|+|+|..|+.++..++.++.+ +|+++++++
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 478999999999999998888877742 788887665
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.76 Score=34.77 Aligned_cols=100 Identities=24% Similarity=0.242 Sum_probs=56.8
Q ss_pred EEEEEccChHHHHHHHHHHHcC-CCEEEEEcCCh--hhHHHHHHc----C---Cce-------EeCCCC---CCchHHHH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNP--EKCEKAKAF----G---VTE-------FLNPND---NNEPVQQV 248 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~--~~~~~~~~l----g---~~~-------vi~~~~---~~~~~~~~ 248 (371)
+|.|+|-|-+|+++...+.... . +++++.... +....+-++ | ... +++.+. ....-.++
T Consensus 3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~ 81 (166)
T d1gado1 3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN 81 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence 5789999999999999887663 5 667765433 233333221 1 110 111100 00000111
Q ss_pred HHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCCC
Q 017460 249 IKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 249 v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
+.+ +. ++|+||||+|.-...+.+...+..+ -+-|.+..+..
T Consensus 82 i~W--~~~gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP~~ 123 (166)
T d1gado1 82 LKW--DEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPSK 123 (166)
T ss_dssp GCH--HHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCCS
T ss_pred CCc--cccCCCEEEEccccccCHHHHHHHhcCC-CceEEeecccc
Confidence 111 12 8999999999766667777888876 55566655433
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=89.30 E-value=0.44 Score=40.57 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=45.6
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc-CCceEe-CCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF-GVTEFL-NPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l-g~~~vi-~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
+|||+|+ |.+|...++.+...|..+|++++....+...+.+. .+..+. |.+. ...+.+.+.. ++|+||.+.+
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~-~~~~~~~~~~----~~d~Vih~a~ 76 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI-HSEWIEYHVK----KCDVVLPLVA 76 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTT-CSHHHHHHHH----HCSEEEECBC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCC-hHHHHHHHHh----CCCccccccc
Confidence 6999986 99999999888788843899997766554443322 222221 3321 2233332222 6899999876
Q ss_pred C
Q 017460 266 D 266 (371)
Q Consensus 266 ~ 266 (371)
.
T Consensus 77 ~ 77 (342)
T d2blla1 77 I 77 (342)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=89.16 E-value=0.32 Score=40.30 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=26.7
Q ss_pred EEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCC-hhhHHH
Q 017460 190 VVIFGL-GTVGLSVAQGAKARGASRIIGVDTN-PEKCEK 226 (371)
Q Consensus 190 VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~-~~~~~~ 226 (371)
+||+|+ +++|.+.++.+...|+ +|+.+.++ +++.+.
T Consensus 5 AlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~ 42 (284)
T d1e7wa_ 5 ALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA 42 (284)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHH
Confidence 466685 8999999999999999 88776554 444433
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.14 E-value=0.28 Score=35.17 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=31.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
+.+.+++|+|+|.+|+=++..+..+|. +|..+.+.+
T Consensus 30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~ 65 (122)
T d1xhca2 30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA 65 (122)
T ss_dssp HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence 345789999999999999999999999 999998764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.03 E-value=0.33 Score=38.27 Aligned_cols=41 Identities=39% Similarity=0.553 Sum_probs=35.9
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHc
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAF 230 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~l 230 (371)
+|.|+|.|-+|+..+..+...|. +|++++.++++.+.+.+-
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g 42 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQG 42 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT
T ss_pred EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhccc
Confidence 58899999999998888888898 999999999998888653
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=88.92 E-value=0.16 Score=40.32 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=28.1
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
-|+|+|+|+.|+.++..+..+|. +|++++..+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence 37899999999999999999999 899997653
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=88.91 E-value=0.81 Score=38.61 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=61.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcC------C-----ceEeCCCCCCchHHHHHHHHh
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFG------V-----TEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg------~-----~~vi~~~~~~~~~~~~v~~~~ 253 (371)
...++|||+|.|. |..+-.++++....+|.+++.+++=.+.++++- + ..++ ..+..+.+++ +
T Consensus 76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~-----~~Da~~~l~~-~ 148 (312)
T d1uira_ 76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLV-----IDDARAYLER-T 148 (312)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE-----ESCHHHHHHH-C
T ss_pred CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEE-----EchHHHHhhh-c
Confidence 4568999998764 555666777766559999999999888876532 1 0122 1234444443 3
Q ss_pred CCCccEEE-EcC---CC---------hHHHHHHHHHhccCCceEEEe
Q 017460 254 DGGADYSF-ECI---GD---------TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 254 ~gg~dvVi-d~~---g~---------~~~l~~~~~~l~~~~G~~v~~ 287 (371)
++.+|+|| |.. +. .+.++.+.++|+++ |.++.-
T Consensus 149 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~ 194 (312)
T d1uira_ 149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQ 194 (312)
T ss_dssp CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEE
T ss_pred CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEe
Confidence 34899986 442 21 13467788999997 988763
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.90 E-value=0.16 Score=42.87 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=28.7
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.|+|+|||..|+.++..+...|. +|.+++.++
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence 47899999999999999988898 999998765
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=88.75 E-value=0.099 Score=40.81 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
++..|+|+|+|+.|+.|+..+..+|. +|+++++.+
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~ 38 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGME 38 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeec
Confidence 45679999999999999999999999 888887654
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.69 E-value=0.35 Score=36.27 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=30.9
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
-+++|+|+|+|.+|.=++..+..+|++.|+++.+.+
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 367899999999999999999999997888887654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=88.53 E-value=1.1 Score=37.90 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=60.8
Q ss_pred cCCCCCCEEEEEcc--ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc----eEeCCCCCCchHHHHHHH
Q 017460 182 ADISKGSTVVIFGL--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT----EFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 182 ~~~~~~~~VlI~Ga--g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~----~vi~~~~~~~~~~~~v~~ 251 (371)
..+.+|++||-..+ |+.++.| ...|+..|+.++.++...+.+++ .|.+ .++.. +.-+.++.
T Consensus 140 ~~~~~g~~VLdlf~~~G~~sl~a----a~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~-----d~~~~l~~ 210 (317)
T d2b78a2 140 NGSAAGKTVLNLFSYTAAFSVAA----AMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM-----DVFDYFKY 210 (317)
T ss_dssp HTTTBTCEEEEETCTTTHHHHHH----HHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES-----CHHHHHHH
T ss_pred HHhhCCCceeecCCCCcHHHHHH----HhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEc-----cHHHHHHH
Confidence 45678999998844 5555432 23688789999999988877743 3331 23322 34444444
Q ss_pred Hh-CC-CccEEEEcCCC---------------hHHHHHHHHHhccCCceEEEec
Q 017460 252 IT-DG-GADYSFECIGD---------------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 252 ~~-~g-g~dvVid~~g~---------------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+. .+ .||+||-=.+. ...+..++++++++ |.++.+.
T Consensus 211 ~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~s 263 (317)
T d2b78a2 211 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIAST 263 (317)
T ss_dssp HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEe
Confidence 32 34 79998642110 12567788899997 9888764
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.47 E-value=0.23 Score=40.81 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=31.7
Q ss_pred CCCEEEEEcc-ChHHHHHHH-HHHH--cCCCEEEEEcCChhhHHHH
Q 017460 186 KGSTVVIFGL-GTVGLSVAQ-GAKA--RGASRIIGVDTNPEKCEKA 227 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~-la~~--~G~~~vi~~~~~~~~~~~~ 227 (371)
.|+.+||+|+ +++|.+.++ ||+. .|+ +|+.+.+++++++.+
T Consensus 5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~ 49 (259)
T d1oaaa_ 5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL 49 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHH
Confidence 3567788886 899998655 5553 588 999999999987765
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.39 E-value=1 Score=37.46 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=61.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC----------ceEeCCCCCCchHHHHHHHHh
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV----------TEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~----------~~vi~~~~~~~~~~~~v~~~~ 253 (371)
....++|||+|.|. |.++-.++++.+..+|.+++-+++=.+.++++-. ..++. .+....++. +
T Consensus 76 ~~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~-----~Da~~~l~~-~ 148 (285)
T d2o07a1 76 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV-----GDGFEFMKQ-N 148 (285)
T ss_dssp SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHHHT-C
T ss_pred CcCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE-----ccHHHHHhc-C
Confidence 44568999998654 4556667777777799999999998888876431 11221 122333332 3
Q ss_pred CCCccEEE-EcCCC---------hHHHHHHHHHhccCCceEEEec
Q 017460 254 DGGADYSF-ECIGD---------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 254 ~gg~dvVi-d~~g~---------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+.+|+|| |.... .+-++.+-+.|+++ |.++.-.
T Consensus 149 ~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~ 192 (285)
T d2o07a1 149 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG 192 (285)
T ss_dssp SSCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEec
Confidence 34899975 43321 12367777899997 9988653
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.37 E-value=0.26 Score=41.16 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=29.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~ 218 (371)
.|.+|+|.|.|.+|..+++++...|+ +|+++.
T Consensus 35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs 66 (293)
T d1hwxa1 35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG 66 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 57899999999999999999999999 888875
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.21 E-value=0.18 Score=43.00 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=27.9
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
|+|+|+|..|+.++..++..|. +|++++.++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 7899999999999999999999 999998654
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=88.14 E-value=0.2 Score=39.81 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=27.5
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
|+|+|+|+.|+.|+..|..+|. +|.++++.
T Consensus 5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~ 34 (217)
T d1gesa1 5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK 34 (217)
T ss_dssp EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence 7889999999999999999999 89999875
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=88.00 E-value=2.6 Score=34.84 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=39.3
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc--CChhhHHHHHHcCCce
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD--TNPEKCEKAKAFGVTE 234 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~lg~~~ 234 (371)
+...++++.+|+..++|.-|.+++..++.+|.+-++++. .++.+...++.+|++.
T Consensus 54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v 110 (302)
T d1fcja_ 54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANL 110 (302)
T ss_dssp HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred HcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccce
Confidence 445567777766667899999999999999984333332 3456777778888754
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=87.95 E-value=1 Score=38.32 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=46.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHH--HHHHc-CCceEe-CCCCCCchHHHHHHHHhCCCccEE
Q 017460 186 KGSTVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCE--KAKAF-GVTEFL-NPNDNNEPVQQVIKRITDGGADYS 260 (371)
Q Consensus 186 ~~~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~--~~~~l-g~~~vi-~~~~~~~~~~~~v~~~~~gg~dvV 260 (371)
+-++|||+|+ |.+|...+..+...|+ +|+++.|+..+.. .+..+ |++.+. |..+ .. +.+..... +.|.+
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d-~~---~~~~~a~~-~~~~~ 75 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLN-NV---PLMDTLFE-GAHLA 75 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTEEEEESCCTT-CH---HHHHHHHT-TCSEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchhhhhhhcccCCCEEEEeeCCC-cH---HHHHHHhc-CCceE
Confidence 4578999986 9999999999999999 8999988766432 33333 444332 3321 12 22333333 56776
Q ss_pred EEcCC
Q 017460 261 FECIG 265 (371)
Q Consensus 261 id~~g 265 (371)
+....
T Consensus 76 ~~~~~ 80 (350)
T d1xgka_ 76 FINTT 80 (350)
T ss_dssp EECCC
T ss_pred Eeecc
Confidence 66443
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=87.78 E-value=0.24 Score=40.71 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=28.1
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
.|+|+|+|.+|++++..+...|. +|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 48999999999998888888898 999998754
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=87.73 E-value=0.57 Score=39.26 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=61.2
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc----------eEeCCCCCCchHHHHHHHHhC
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT----------EFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~----------~vi~~~~~~~~~~~~v~~~~~ 254 (371)
...++|||+|.|. |..+-.++++.+..+|.+++.+++-.+.++++-.. .++. .+..+.+++ +.
T Consensus 88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~-----~Da~~~l~~-~~ 160 (295)
T d1inla_ 88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-----ANGAEYVRK-FK 160 (295)
T ss_dssp SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHGGG-CS
T ss_pred CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh-----hhHHHHHhc-CC
Confidence 4468999998754 34466777777766999999999988888764310 1221 123333332 23
Q ss_pred CCccEEE-EcCC----------ChHHHHHHHHHhccCCceEEEec
Q 017460 255 GGADYSF-ECIG----------DTGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 255 gg~dvVi-d~~g----------~~~~l~~~~~~l~~~~G~~v~~g 288 (371)
+.+|+|| |+.. +.+.++.+.+.|+++ |.++.-.
T Consensus 161 ~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~ 204 (295)
T d1inla_ 161 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAET 204 (295)
T ss_dssp SCEEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEec
Confidence 3899976 4322 123467888899997 9988754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.71 E-value=0.11 Score=41.82 Aligned_cols=97 Identities=13% Similarity=0.035 Sum_probs=61.6
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC----c--eEeCCCCCCchHHHHHHHHhCC
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV----T--EFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~----~--~vi~~~~~~~~~~~~v~~~~~g 255 (371)
....++.+||-+|+|. |..+..+++..+. +|++++.+++-++.+++... . ..+... ..++ ....+
T Consensus 56 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d--~~~~-----~~~~~ 126 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG--LQDF-----TPEPD 126 (222)
T ss_dssp --CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECC--GGGC-----CCCSS
T ss_pred cCCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccccccccc--cccc-----ccccc
Confidence 3456778999999874 6667777666665 99999999999888866432 1 122111 0110 01123
Q ss_pred CccEEEEcC-----CCh---HHHHHHHHHhccCCceEEEec
Q 017460 256 GADYSFECI-----GDT---GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 256 g~dvVid~~-----g~~---~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+|+|+... ..+ ..+..+.+.|+++ |.++...
T Consensus 127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~ 166 (222)
T d2ex4a1 127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKD 166 (222)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred cccccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEE
Confidence 799998732 222 3577788889997 9988763
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=87.56 E-value=1.7 Score=32.51 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=55.6
Q ss_pred EEEEEccChHHHH-HHHHHHHc-CCCEEEE-EcCChhhHHH-HHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcC
Q 017460 189 TVVIFGLGTVGLS-VAQGAKAR-GASRIIG-VDTNPEKCEK-AKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECI 264 (371)
Q Consensus 189 ~VlI~Gag~~G~~-ai~la~~~-G~~~vi~-~~~~~~~~~~-~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~ 264 (371)
+|.|+|.|.+|.- .+...+.. ++ ++++ .++++++.+. +++++.. .++ ++.+ +. ..+|+|+-++
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~-~i~~v~d~~~~~~~~~~~~~~~~-~~~------~~~~-l~----~~~D~V~I~t 69 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPICESWRIP-YAD------SLSS-LA----ASCDAVFVHS 69 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHHHHHHTCC-BCS------SHHH-HH----TTCSEEEECS
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEechhHhhhhhhhccccc-ccc------cchh-hh----hhcccccccc
Confidence 5789999998863 56666554 66 5554 5566666554 4667764 221 2222 21 2589999999
Q ss_pred CChHHHHHHHHHhccCCceEEEecC
Q 017460 265 GDTGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 265 g~~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
......+.+..++.. |.-+.+.-
T Consensus 70 p~~~h~~~~~~al~~--gk~V~~EK 92 (164)
T d1tlta1 70 STASHFDVVSTLLNA--GVHVCVDK 92 (164)
T ss_dssp CTTHHHHHHHHHHHT--TCEEEEES
T ss_pred cchhccccccccccc--cceeeccc
Confidence 887778888888877 55566643
|
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.36 E-value=2.9 Score=35.03 Aligned_cols=106 Identities=26% Similarity=0.229 Sum_probs=65.3
Q ss_pred hhcCCCCCCEEEEE-ccChHHHHHHHHHHHcCCCEEEEEc---CChhhHHHHHHcCCceEeCCC-C--------------
Q 017460 180 NVADISKGSTVVIF-GLGTVGLSVAQGAKARGASRIIGVD---TNPEKCEKAKAFGVTEFLNPN-D-------------- 240 (371)
Q Consensus 180 ~~~~~~~~~~VlI~-Gag~~G~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~lg~~~vi~~~-~-------------- 240 (371)
+...++.+...+|. .+|..|++.+..++.+|. +++++. .++.|++.++.+|++.+.-.. .
T Consensus 57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~-~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~ 135 (320)
T d1z7wa1 57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGY-KLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILA 135 (320)
T ss_dssp HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCceEEeeCCchHHHHHHHHHHhhcc-ceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHH
Confidence 44556666565555 579999999999999998 444442 355688888999986432110 0
Q ss_pred ------------CCc-------hHHHHHHHHhCCCccEEEEcCCChHHHH---HHHHHhccCCceEEEe
Q 017460 241 ------------NNE-------PVQQVIKRITDGGADYSFECIGDTGMIT---TALQSCCDGWGLAVTL 287 (371)
Q Consensus 241 ------------~~~-------~~~~~v~~~~~gg~dvVid~~g~~~~l~---~~~~~l~~~~G~~v~~ 287 (371)
+.. ....++.+...+.+|.|+-++|+...+. ..++...+. -+++.+
T Consensus 136 ~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~-~~~igv 203 (320)
T d1z7wa1 136 KTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNAN-VKLYGV 203 (320)
T ss_dssp HCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEE
T ss_pred hCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcc-eeeecc
Confidence 111 1223344444447899999998765433 444555554 666554
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.29 E-value=0.25 Score=39.40 Aligned_cols=32 Identities=31% Similarity=0.331 Sum_probs=27.8
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
-|+|+|+|+.|+.|+..|..+|. +|++++..+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~-kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence 47889999999999888888999 899998654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.27 E-value=0.25 Score=39.32 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=28.1
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
.++|+|+|+.|+.++..|..+|. +|.+++..
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 47889999999999999999999 99999865
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.14 E-value=0.87 Score=35.41 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=62.1
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHHHH----cCC-ceEeCCCCCCchHHHHHHHHh
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKAKA----FGV-TEFLNPNDNNEPVQQVIKRIT 253 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~----lg~-~~vi~~~~~~~~~~~~v~~~~ 253 (371)
....+++++.++=.+.|.=|... .+++.. +. +|++++++++..+.+++ ++- ..++..+ -.++...+..+.
T Consensus 17 ~~l~~~~~~~~lD~t~G~Gghs~-~il~~~~~~-~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~--f~~~~~~~~~~~ 92 (192)
T d1m6ya2 17 EFLKPEDEKIILDCTVGEGGHSR-AILEHCPGC-RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVS--YREADFLLKTLG 92 (192)
T ss_dssp HHHCCCTTCEEEETTCTTSHHHH-HHHHHCTTC-EEEEEESCHHHHHHHHHHTGGGTTTEEEEECC--GGGHHHHHHHTT
T ss_pred HhhCCCCCCEEEEecCCCcHHHH-HHHhcCCCC-eEEEeechHHHHHHHHHhhccccccccchhHH--HhhHHHHHHHcC
Confidence 44567888877555445545544 444444 55 99999999999888865 332 1234332 334444444443
Q ss_pred CCCccEE-EEcCCC--------------hHHHHHHHHHhccCCceEEEecC
Q 017460 254 DGGADYS-FECIGD--------------TGMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 254 ~gg~dvV-id~~g~--------------~~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.+.+|.| +|.--+ ...+..+...++++ |+++.+..
T Consensus 93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~f 142 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVISF 142 (192)
T ss_dssp CSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEES
T ss_pred CCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeecc
Confidence 3478876 553211 12466777778887 88876643
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=87.11 E-value=0.31 Score=39.73 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=28.1
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChh
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPE 222 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~ 222 (371)
.|||+|+ +++|++.++.+...|+ +|+.++++++
T Consensus 3 VvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~ 36 (257)
T d1fjha_ 3 IIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA 36 (257)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence 4688885 8999999999999999 9999988654
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=87.08 E-value=0.56 Score=33.11 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=26.8
Q ss_pred CCEEEEEccChHHHHHHHHHHHc---CCCEEEEEcCCh
Q 017460 187 GSTVVIFGLGTVGLSVAQGAKAR---GASRIIGVDTNP 221 (371)
Q Consensus 187 ~~~VlI~Gag~~G~~ai~la~~~---G~~~vi~~~~~~ 221 (371)
.++++|+|+|.+|.=.++++..+ |. +|..+.+.+
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD 54 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence 47999999999998877765544 77 888887654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=87.04 E-value=0.22 Score=42.49 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=26.0
Q ss_pred EEEEEccChHHHHHHHHHH-----HcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAK-----ARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~-----~~G~~~vi~~~~~~ 221 (371)
-|+|+|+|++|++++..+. ..|. +|+++++.+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence 3889999999998777763 4699 899998765
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=86.93 E-value=3.4 Score=31.10 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=58.3
Q ss_pred EEEEEccChHHHHHHHHHHHc-CCCEEEEEcC---ChhhHHHHHHcCC-------ce-------EeCCCC----CCchHH
Q 017460 189 TVVIFGLGTVGLSVAQGAKAR-GASRIIGVDT---NPEKCEKAKAFGV-------TE-------FLNPND----NNEPVQ 246 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~---~~~~~~~~~~lg~-------~~-------vi~~~~----~~~~~~ 246 (371)
+|.|+|-|-+|+++...+... .. +++++.. +.+....+-++-. +. .++.+. ...+ .
T Consensus 3 kIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~-p 80 (169)
T d1u8fo1 3 KVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD-P 80 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS-G
T ss_pred EEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC-h
Confidence 688999999999999887655 46 7777733 3445555533211 00 111100 0000 1
Q ss_pred HHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 247 QVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 247 ~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+++. ... ++|+|+||+|.-...+.+...+..+ -+-|.+..+.
T Consensus 81 ~~i~--W~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSaP~ 123 (169)
T d1u8fo1 81 SKIK--WGDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAPS 123 (169)
T ss_dssp GGCC--TTTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESSCC
T ss_pred hhCC--ccccCCCEEEEecceeccHHHHHHHHhcC-CceEeecccc
Confidence 1111 224 8999999999765667777778876 6666665543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=86.91 E-value=0.5 Score=38.63 Aligned_cols=100 Identities=12% Similarity=-0.093 Sum_probs=64.2
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC-ceEeCCCCCCchHHHHHHHHh--CCC
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-TEFLNPNDNNEPVQQVIKRIT--DGG 256 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~vi~~~~~~~~~~~~v~~~~--~gg 256 (371)
+.....++.+||=+|+|. |..+..++...+. +|.+++.+++-++.+++.-. ...++.. ..+ +..+. ++.
T Consensus 87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~--~~d----~~~~~~~~~~ 158 (254)
T d1xtpa_ 87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFI--LAS----METATLPPNT 158 (254)
T ss_dssp HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEE--ESC----GGGCCCCSSC
T ss_pred hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeE--Ecc----ccccccCCCc
Confidence 444556778999999875 7778888776665 89999999999888875322 1111110 001 11121 237
Q ss_pred ccEEEEcCCC-----h---HHHHHHHHHhccCCceEEEec
Q 017460 257 ADYSFECIGD-----T---GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 257 ~dvVid~~g~-----~---~~l~~~~~~l~~~~G~~v~~g 288 (371)
||+|+-.-.- . ..++.+.+.|+++ |.++...
T Consensus 159 fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e 197 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKE 197 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred cceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEe
Confidence 9999774321 1 2367788889997 9888653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.84 E-value=0.71 Score=38.06 Aligned_cols=104 Identities=13% Similarity=0.000 Sum_probs=56.8
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHH----c-CC-CEEEEEcCChhhHHHHHHcCC-----c-eEeCCCC-CCchHHHHH
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKA----R-GA-SRIIGVDTNPEKCEKAKAFGV-----T-EFLNPND-NNEPVQQVI 249 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~----~-G~-~~vi~~~~~~~~~~~~~~lg~-----~-~vi~~~~-~~~~~~~~v 249 (371)
..+++.+||-+|+|. |..+..+++. . +. ..+++++.++..++.+++.-. . ..++... ..+.+....
T Consensus 37 ~~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (280)
T d1jqea_ 37 DTKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRM 115 (280)
T ss_dssp TTCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHH
T ss_pred cCCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchh
Confidence 345555799888753 3333333332 2 22 167889999988887755311 1 1122110 011222222
Q ss_pred HHHhCC-CccEEEEcCC-----C-hHHHHHHHHHhccCCceEEEec
Q 017460 250 KRITDG-GADYSFECIG-----D-TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 250 ~~~~~g-g~dvVid~~g-----~-~~~l~~~~~~l~~~~G~~v~~g 288 (371)
...... .||+|+-.-. + ...++.+.++|+++ |.++...
T Consensus 116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~ 160 (280)
T d1jqea_ 116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIV 160 (280)
T ss_dssp TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEE
Confidence 222223 8999986332 2 24688899999997 9877654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.68 E-value=1 Score=33.37 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=43.6
Q ss_pred CCCCEEEEEcc--ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCc---eEeCCCCCCchHHHHHHHHhCC
Q 017460 185 SKGSTVVIFGL--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVT---EFLNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 185 ~~~~~VlI~Ga--g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~---~vi~~~~~~~~~~~~v~~~~~g 255 (371)
-+|.+||=+++ |.+|+.| ..+|+++|+.++.+++-.+.+ +.++.. .++.. +..+.+. ...+
T Consensus 13 ~~g~~vlDl~~GtG~~~iea----~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~-----D~~~~l~-~~~~ 82 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEA----VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKM-----EAERAID-CLTG 82 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHH----HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECS-----CHHHHHH-HBCS
T ss_pred CCCCeEEEcCCccCHHHHHH----HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcc-----ccccccc-cccc
Confidence 35888988854 6666533 347888999999998877665 345653 23322 3333343 3344
Q ss_pred CccEEEEc
Q 017460 256 GADYSFEC 263 (371)
Q Consensus 256 g~dvVid~ 263 (371)
.||+||--
T Consensus 83 ~fDiIf~D 90 (152)
T d2esra1 83 RFDLVFLD 90 (152)
T ss_dssp CEEEEEEC
T ss_pred ccceeEec
Confidence 89998753
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.61 E-value=0.3 Score=39.06 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=28.3
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
-|+|+|+|+.|+.|+..|..+|. +|.+++..+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence 37888999999999999999999 999998654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=86.57 E-value=0.67 Score=38.44 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHH----cCCceE-eCCCCCCchHHHHHHHHhCC
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKA----FGVTEF-LNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~----lg~~~v-i~~~~~~~~~~~~v~~~~~g 255 (371)
.++.++.+||=+|+|. |..+..+++..+. .+|++++.++...+.+++ .+.+.. .... ...+ ...+
T Consensus 23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d--~~~~------~~~~ 93 (281)
T d2gh1a1 23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD--ATEI------ELND 93 (281)
T ss_dssp SCCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESC--TTTC------CCSS
T ss_pred hccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccc--cccc------cccC
Confidence 3567788999999874 8888888887642 289999999988877754 343321 1111 1110 0123
Q ss_pred CccEEEEcCC-----C-hHHHHHHHHHhccCCceEEEec
Q 017460 256 GADYSFECIG-----D-TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 256 g~dvVid~~g-----~-~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.||+|+.... + ...++.+.+.|+++ |.++...
T Consensus 94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~ 131 (281)
T d2gh1a1 94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE 131 (281)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred CceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence 7999986432 2 23578899999997 9988764
|
| >d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: GroES domain: Chaperonin-10 (GroES) species: Escherichia coli [TaxId: 562]
Probab=86.52 E-value=0.9 Score=30.93 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=19.6
Q ss_pred eEEEEEeeCCCCC---------CCCCCCEEEee
Q 017460 64 CCRIVESVGPGVT---------EFNEGEHVLTV 87 (371)
Q Consensus 64 ~~G~V~~~G~~v~---------~~~~Gd~V~~~ 87 (371)
..|+|+++|++.. ..++||+|+..
T Consensus 36 ~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~ 68 (97)
T d1aono_ 36 TRGEVLAVGNGRILENGEVKPLDVKVGDIVIFN 68 (97)
T ss_dssp CEEEEEEECSBCCTTSSCCCBCSCCTTCEEEEC
T ss_pred eeEEEEEEeeeEEccCCcCccccCCCCCEEEEe
Confidence 5899999998652 37899999975
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=86.46 E-value=3.3 Score=31.34 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=55.8
Q ss_pred EEEEEccChHHHHHHHHHHHcC----CCEEEEEcC--ChhhHHHHHHcC-------Cce-------EeCCCC----CCch
Q 017460 189 TVVIFGLGTVGLSVAQGAKARG----ASRIIGVDT--NPEKCEKAKAFG-------VTE-------FLNPND----NNEP 244 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G----~~~vi~~~~--~~~~~~~~~~lg-------~~~-------vi~~~~----~~~~ 244 (371)
+|.|+|-|-+|+++...+...+ . .|+++.. +.+....+-++. ... .++... ...+
T Consensus 3 kigINGfGRIGR~v~R~~~~~~~~~~~-~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~ 81 (173)
T d1obfo1 3 RVAINGYGRIGRNILRAHYEGGKSHDI-EIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN 81 (173)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTSCSSE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCCe-EEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence 5789999999999998775433 3 5666642 334444443221 110 111100 0000
Q ss_pred HHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 245 VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 245 ~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
.+++. ... ++|+||||+|.-...+.+...|..+ -+-|.+..+.
T Consensus 82 -p~~i~--W~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP~ 125 (173)
T d1obfo1 82 -PAQLP--WGALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAPG 125 (173)
T ss_dssp -GGGSC--TTTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSCC
T ss_pred -HHHCc--ccccccceEEEecccccCHHHHHHHhccC-CcceEEecCC
Confidence 11111 124 8999999999765667777888876 6666665543
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=86.46 E-value=3.1 Score=34.93 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=61.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc---CChhhHHHHHHcCCceEeCCCC----------------------
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD---TNPEKCEKAKAFGVTEFLNPND---------------------- 240 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~lg~~~vi~~~~---------------------- 240 (371)
+..+|+...+|..|.+.+..++..|. +++++. .+++|.+.++.+|++.++....
T Consensus 74 ~~~~vv~assGN~g~a~A~~a~~~g~-~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (331)
T d1tdja1 74 KAHGVITASAGNHAQGVAFSSARLGV-KALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPP 152 (331)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHTTC-CEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECCS
T ss_pred CCCeeeecccchhHHHHHHhhccccc-cceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhhhhcCCCccccc
Confidence 44555555679999999999999999 444443 3556788889999975432221
Q ss_pred -CCch-------HHHHHHHHhCCCccEEEEcCCChHHH---HHHHHHhccCCceEEEec
Q 017460 241 -NNEP-------VQQVIKRITDGGADYSFECIGDTGMI---TTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 241 -~~~~-------~~~~v~~~~~gg~dvVid~~g~~~~l---~~~~~~l~~~~G~~v~~g 288 (371)
++.. ...++.+. .+.+|.||-++|+...+ -..++.+.+. .+++.+.
T Consensus 153 ~~~~~~~~g~~t~~~Ei~~q-~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~-~~ii~ve 209 (331)
T d1tdja1 153 FDHPMVIAGQGTLALELLQQ-DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQ-IKVIAVE 209 (331)
T ss_dssp SCCHHHHHHHHHHHHHHHHH-CTTCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred cCChHHhhhhhhHHHHHHHh-cCCCCEEEEeCChhHHHHHHHHHHHHhCCC-cEEEEec
Confidence 0111 11222221 12689999999875543 3445555665 6777664
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.43 E-value=0.78 Score=32.36 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=41.7
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCC--EEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEE
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGAS--RIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFE 262 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~--~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid 262 (371)
.+++++|+|+|.+|.=.+..+..+|.. .|..+.+.+. ++..- ++...+.+.+.... |+++.++
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~------------iL~~~--d~~~~~~l~~~l~~~GV~v~~~ 84 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM------------ILRGF--DHTLREELTKQLTANGIQILTK 84 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS------------SSTTS--CHHHHHHHHHHHHHTTCEEEES
T ss_pred cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch------------hhccc--chHHHHHHHHHHHhcCcEEEcC
Confidence 357999999999999888777776542 6888876531 11111 34555566655544 7777775
Q ss_pred c
Q 017460 263 C 263 (371)
Q Consensus 263 ~ 263 (371)
+
T Consensus 85 ~ 85 (117)
T d1aoga2 85 E 85 (117)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.42 E-value=0.31 Score=38.51 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=27.5
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
|+|+|+|+.|+.++..|...|. +|.++++..
T Consensus 6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~~ 36 (223)
T d1ebda1 6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN 36 (223)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecCC
Confidence 7888999999999999999999 899997653
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.39 E-value=0.77 Score=34.16 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=32.6
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhH
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKC 224 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~ 224 (371)
|..+|.|+|+|.+|...+.++...+...+..++.++++.
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~ 40 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP 40 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence 356899999999998888888888888999999877654
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=86.34 E-value=0.32 Score=40.83 Aligned_cols=32 Identities=38% Similarity=0.653 Sum_probs=28.1
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
-|+|+|+|..|+.++.-|...|+ +|++++..+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 48999999999999998989999 899998654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.33 E-value=1.7 Score=35.76 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=59.0
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC-c---------------eEeCCCCCCchHHH
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-T---------------EFLNPNDNNEPVQQ 247 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~---------------~vi~~~~~~~~~~~ 247 (371)
..+..+|||+|.|. |..+-.++++ +..+|.+++.+++=.+.++++-. . +++. .+...
T Consensus 70 ~~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~-----~Da~~ 142 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-----GDGFE 142 (276)
T ss_dssp SSCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-----SCHHH
T ss_pred CCCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE-----ChHHH
Confidence 35568999998754 3333444554 44589999999998888876321 1 1221 12333
Q ss_pred HHHHHhCCCccEEE-EcCCC---------hHHHHHHHHHhccCCceEEEec
Q 017460 248 VIKRITDGGADYSF-ECIGD---------TGMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 248 ~v~~~~~gg~dvVi-d~~g~---------~~~l~~~~~~l~~~~G~~v~~g 288 (371)
.+++ ++++|+|| |.... .+-++.+-++|+++ |.++.-+
T Consensus 143 ~l~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~ 190 (276)
T d1mjfa_ 143 FIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA 190 (276)
T ss_dssp HHHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred HHhc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEec
Confidence 3432 34899975 44432 23467788899997 9987643
|
| >d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YjeF N-terminal domain-like superfamily: YjeF N-terminal domain-like family: YjeF N-terminal domain-like domain: Hypothetical protein TM0922, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.29 E-value=5.1 Score=31.27 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=53.7
Q ss_pred CCCEEEEE-ccCh---HHHHHHHHHHHcCCCEEEEEcCChh-------hHHHHHHcCCceEeCCCCCCchHHHHHHHHhC
Q 017460 186 KGSTVVIF-GLGT---VGLSVAQGAKARGASRIIGVDTNPE-------KCEKAKAFGVTEFLNPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 186 ~~~~VlI~-Gag~---~G~~ai~la~~~G~~~vi~~~~~~~-------~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~ 254 (371)
+..+|+|+ |.|. =|++++..++..|+ +|.++-..+. ..+..++++...+ +.. ... ..
T Consensus 39 ~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~--------~~ 106 (211)
T d2ax3a2 39 SDYRFLVLCGGGNNGGDGFVVARNLLGVVK-DVLVVFLGKKKTPDCEYNYGLYKKFGGKVV-EQF--EPS--------IL 106 (211)
T ss_dssp TTCEEEEEECSSHHHHHHHHHHHHHTTTSS-EEEEEECCSSCCHHHHHHHHHHHHTTCCEE-SCC--CGG--------GG
T ss_pred cCCcEEEEECCCCCchhHHHHHHHHHhcCC-eeEEEecCccCCcHHHHHHHHHHHcCCccc-ccc--ccc--------cc
Confidence 45677776 7554 45777777777898 7776644332 1223355555432 221 111 01
Q ss_pred CCccEEEEcCCCh-------HHHHHHHHHhccCCceEEEecCCCC
Q 017460 255 GGADYSFECIGDT-------GMITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 255 gg~dvVid~~g~~-------~~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
..+|+|+|+.=+. ..+...++.++.....++.+..+++
T Consensus 107 ~~~dlIIDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPSG 151 (211)
T d2ax3a2 107 NEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSG 151 (211)
T ss_dssp GGCSEEEEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCTT
T ss_pred cCceEEEEecccCCccccchHHHHHHHHHHHhhccceeeeccCcc
Confidence 2689999987321 2466677777664245667765544
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=86.25 E-value=0.26 Score=37.72 Aligned_cols=26 Identities=42% Similarity=0.612 Sum_probs=24.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGA 211 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~ 211 (371)
.+++|+|+|+|.+|.-++..++.+|.
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~ 27 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGW 27 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCC
Confidence 47899999999999999999999998
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.24 E-value=0.71 Score=37.19 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=28.5
Q ss_pred CCCCEEEEEccChHHHHHHHHH-HHcCCCEEEEEc
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGA-KARGASRIIGVD 218 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la-~~~G~~~vi~~~ 218 (371)
-++.+|+|.|.|.+|..+++++ +..|+ +|+++.
T Consensus 29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs 62 (234)
T d1b26a1 29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS 62 (234)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence 4688999999999999999887 67899 888775
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=86.03 E-value=0.22 Score=43.16 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=42.6
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCCh--hhHHHHHHcCC---ceE--eCCCCCCchHHHHHHHHhCC-CccE
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNP--EKCEKAKAFGV---TEF--LNPNDNNEPVQQVIKRITDG-GADY 259 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~lg~---~~v--i~~~~~~~~~~~~v~~~~~g-g~dv 259 (371)
+|||+|+ |-+|...+..+...|...|++++... .+.+.+..+.. -.. .|.+ +.. .+.++..+ .+|+
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~~---~l~~~~~~~~~d~ 76 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC--DSA---EITRIFEQYQPDA 76 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTT--CHH---HHHHHHHHHCCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCC--CHH---HHHHHHHhCCCCE
Confidence 6999986 99999999988888985566665422 11222222211 111 2433 222 33333334 7999
Q ss_pred EEEcCC
Q 017460 260 SFECIG 265 (371)
Q Consensus 260 Vid~~g 265 (371)
||.+++
T Consensus 77 VihlAa 82 (361)
T d1kewa_ 77 VMHLAA 82 (361)
T ss_dssp EEECCS
T ss_pred EEECcc
Confidence 999875
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=85.75 E-value=0.75 Score=34.04 Aligned_cols=40 Identities=30% Similarity=0.412 Sum_probs=32.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhHH
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKCE 225 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~ 225 (371)
+..+|.|+|+|.+|...+..+...| +.+++.++.++++.+
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~ 44 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK 44 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhH
Confidence 4568999999999998887777766 458999999887643
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.74 E-value=0.34 Score=38.59 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHc--CCCEEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHH---h
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKAR--GASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRI---T 253 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~--G~~~vi~~~~~~~~~~~~----~~lg~~~vi~~~~~~~~~~~~v~~~---~ 253 (371)
+..+..+||-+|.+ .|..++.+|+++ +. +|++++.+++..+.+ +..|...-+... ..+..+.+.++ .
T Consensus 53 ~~~kpk~ILEiGt~-~G~Sti~la~al~~~g-~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~--~Gd~~e~l~~l~~~~ 128 (214)
T d2cl5a1 53 REYSPSLVLELGAY-CGYSAVRMARLLQPGA-RLLTMEMNPDYAAITQQMLNFAGLQDKVTIL--NGASQDLIPQLKKKY 128 (214)
T ss_dssp HHHCCSEEEEECCT-TSHHHHHHHTTCCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEE--ESCHHHHGGGHHHHS
T ss_pred HhhCCCEEEEEccC-chhHHHHHHHhCCCcc-EEEEEeccHHHHHHHHHHHHHcCCCccceee--eccccccccchhhcc
Confidence 34456789999864 366677788776 44 999999999877766 445653212111 12333333333 2
Q ss_pred CC-CccEEEEcCCChH-----HHHHHHHHhccCCceEE
Q 017460 254 DG-GADYSFECIGDTG-----MITTALQSCCDGWGLAV 285 (371)
Q Consensus 254 ~g-g~dvVid~~g~~~-----~l~~~~~~l~~~~G~~v 285 (371)
+. .+|+|+--..... .+.+.++.+++| |.++
T Consensus 129 ~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-GvIv 165 (214)
T d2cl5a1 129 DVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TVLL 165 (214)
T ss_dssp CCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EEEE
T ss_pred cccccceeeecccccccccHHHHHHHhCccCCC-cEEE
Confidence 22 6898764322211 134455668886 7544
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.73 E-value=0.43 Score=39.83 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=31.3
Q ss_pred CCCEEEEEcc-C--hHHHHHHHHHHHcCCCEEEEEcCChhh
Q 017460 186 KGSTVVIFGL-G--TVGLSVAQGAKARGASRIIGVDTNPEK 223 (371)
Q Consensus 186 ~~~~VlI~Ga-g--~~G~~ai~la~~~G~~~vi~~~~~~~~ 223 (371)
+|+++||+|+ | ++|.+.++.+...|+ +|+.+.+++..
T Consensus 7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~ 46 (297)
T d1d7oa_ 7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPAL 46 (297)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchhh
Confidence 5889999996 4 799999999999999 99888776543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.57 E-value=0.64 Score=36.13 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=33.0
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
+|.|+|.|-+|+..+.++ +.|. +|+.++.++++.+.+++
T Consensus 2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~ 40 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN 40 (196)
T ss_dssp EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence 588999999999876555 5798 99999999999888864
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=85.45 E-value=1.1 Score=34.16 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=44.5
Q ss_pred CCCEEEEEccChHHHHH---HHHHH--HcCCCEEEEEcCChhhHHHH--------HHcCCceEeCCCCCCchHHHHHHHH
Q 017460 186 KGSTVVIFGLGTVGLSV---AQGAK--ARGASRIIGVDTNPEKCEKA--------KAFGVTEFLNPNDNNEPVQQVIKRI 252 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~a---i~la~--~~G~~~vi~~~~~~~~~~~~--------~~lg~~~vi~~~~~~~~~~~~v~~~ 252 (371)
|+-+|.|+|+|.+|... ..+++ .+...+++.++.++++.+.. ..++...-+... .+..+.+
T Consensus 1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~---td~~eaL--- 74 (171)
T d1obba1 1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT---MNLDDVI--- 74 (171)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE---SCHHHHH---
T ss_pred CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe---CChhhcc---
Confidence 46689999999998542 22332 22234999999999887542 234443222111 1233332
Q ss_pred hCCCccEEEEcCCCh
Q 017460 253 TDGGADYSFECIGDT 267 (371)
Q Consensus 253 ~~gg~dvVid~~g~~ 267 (371)
.++|+|+.+++..
T Consensus 75 --~dad~Vv~~~~~g 87 (171)
T d1obba1 75 --IDADFVINTAMVG 87 (171)
T ss_dssp --TTCSEEEECCCTT
T ss_pred --cCCCeEeeecccc
Confidence 3799999998764
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=85.42 E-value=0.43 Score=40.66 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=26.5
Q ss_pred CEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNP 221 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~ 221 (371)
++|+|+|||..|++++..++..|. .+|++.++++
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 579999999999988765554442 2899998875
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=85.26 E-value=0.4 Score=40.01 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=26.4
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
.|+|+|+|.+|++++.-+...|.++|.+++++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 58999999999987777767887579999865
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.17 E-value=0.4 Score=37.23 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=27.7
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
..|+|+|+|+.|+.++..|...|. ++++++..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~ 37 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGW 37 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEee
Confidence 579999999999999888888999 88888754
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.01 E-value=0.27 Score=39.37 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=27.4
Q ss_pred CEEEEEccChHHHHHHHHHHHcC-------CCEEEEEcCCh
Q 017460 188 STVVIFGLGTVGLSVAQGAKARG-------ASRIIGVDTNP 221 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G-------~~~vi~~~~~~ 221 (371)
-+|+|+|+|+.|++|+..+...| + .|.+.+..+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~ 42 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLP 42 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCC
Confidence 47999999999999998877666 4 788888765
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=85.00 E-value=0.41 Score=39.42 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=26.8
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
|+|+|+|.+|+.++.-+...|. +|+++++.
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF 35 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 8899999999998888888999 99999864
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.97 E-value=0.45 Score=37.94 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred EEEEEccChHHHHHHHHHH-H-cCCCEEEEEcCChh
Q 017460 189 TVVIFGLGTVGLSVAQGAK-A-RGASRIIGVDTNPE 222 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~-~-~G~~~vi~~~~~~~ 222 (371)
+|+|+|+|+.|+.|+..++ + .|+ +|++++..+.
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~ 37 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLV 37 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSS
T ss_pred eEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence 7999999999999887654 3 477 9999987653
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=84.92 E-value=0.38 Score=38.07 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=26.9
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
|+|+|+|+.|+.|+..|...|. +|.+++..
T Consensus 6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~ 35 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY 35 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 7888999999999999999999 89998754
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.91 E-value=5.2 Score=29.88 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=49.6
Q ss_pred EEEEEccChHHHHHHHHHHHc--CCC-EEEEEcCChh---------------hHHHHHHcCCceEeCCCCCCchHHHHHH
Q 017460 189 TVVIFGLGTVGLSVAQGAKAR--GAS-RIIGVDTNPE---------------KCEKAKAFGVTEFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~--G~~-~vi~~~~~~~---------------~~~~~~~lg~~~vi~~~~~~~~~~~~v~ 250 (371)
+|.|+|.|.+|...+++.... +.. ++..+..+.. ..+........ .........
T Consensus 6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 77 (168)
T d1ebfa1 6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTK--------TLPLDDLIA 77 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCB--------CCCHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccc--------cccHHHHHH
Confidence 577889999999988877653 221 4444432211 11111111110 112222222
Q ss_pred HHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEe
Q 017460 251 RITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 251 ~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~ 287 (371)
..... ..++++|++++....+...+.|..+ =.+|..
T Consensus 78 ~~~~~~~~~vivd~t~~~~~~~~~~~aL~~G-~hVVTA 114 (168)
T d1ebfa1 78 HLKTSPKPVILVDNTSSAYIAGFYTKFVENG-ISIATP 114 (168)
T ss_dssp HHTTCSSCEEEEECSCCHHHHTTHHHHHHTT-CEEECC
T ss_pred HhccCCCceEEEEecCChHHHHHHHHHHHcC-CeEEec
Confidence 23333 6799999999987776667778875 455444
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=84.87 E-value=0.28 Score=40.19 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=59.5
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHc-CCCEEEEEcCChhhHHHH----HHcCCc---eEeCCCCCCchHHHHHHH
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKAR-GASRIIGVDTNPEKCEKA----KAFGVT---EFLNPNDNNEPVQQVIKR 251 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~~~~~~~~~----~~lg~~---~vi~~~~~~~~~~~~v~~ 251 (371)
....+.+..+||-+|+|. |..++.+++.. +. ++++++. ++..+.+ .+.|.. ..+.. ++ .+
T Consensus 74 ~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~-----D~----~~ 141 (253)
T d1tw3a2 74 AAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG-----DF----FE 141 (253)
T ss_dssp HHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC-----CT----TS
T ss_pred hhcCCccCCEEEEeCCCC-CHHHHHHHHhccee-EEEEccC-HHHHHHHHHHHHHhhcccchhhccc-----cc----hh
Confidence 445667788999998874 77888888877 45 8888876 4444433 334431 12211 11 00
Q ss_pred HhCCCccEEEEcCC-----Ch---HHHHHHHHHhccCCceEEEecC
Q 017460 252 ITDGGADYSFECIG-----DT---GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 252 ~~~gg~dvVid~~g-----~~---~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
....++|+|+-..- .+ ..++.+.+.|+++ |+++....
T Consensus 142 ~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG-G~l~i~e~ 186 (253)
T d1tw3a2 142 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHER 186 (253)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred hcccchhheeeccccccCCchhhHHHHHHHHHhcCCC-cEEEEEec
Confidence 11137899874322 12 2477888999998 99987643
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.85 E-value=0.6 Score=36.23 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=55.0
Q ss_pred CCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 186 KGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 186 ~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
.+.+|.|+|.|.+|...+++++..|+ +|+..++..... ...... ..++.+.++ ..|+|.-+.+
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-------~~~~~~----~~~l~ell~-----~sDii~i~~p 105 (188)
T d1sc6a1 43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLP-------LGNATQ----VQHLSDLLN-----MSDVVSLHVP 105 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCC-------CTTCEE----CSCHHHHHH-----HCSEEEECCC
T ss_pred cceEEEEeecccchhhhhhhcccccc-eEeeccccccch-------hhhhhh----hhhHHHHHh-----hccceeeccc
Confidence 47899999999999999999999999 999998653311 011111 112333333 2578777655
Q ss_pred ChH-----HHHHHHHHhccCCceEEEec
Q 017460 266 DTG-----MITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 266 ~~~-----~l~~~~~~l~~~~G~~v~~g 288 (371)
-+. .-.+.++.++++ ..+|..+
T Consensus 106 lt~~T~~li~~~~l~~mk~~-a~lIN~a 132 (188)
T d1sc6a1 106 ENPSTKNMMGAKEISLMKPG-SLLINAS 132 (188)
T ss_dssp SSTTTTTCBCHHHHHHSCTT-EEEEECS
T ss_pred CCcchhhhccHHHHhhCCCC-CEEEEcC
Confidence 321 124667778876 6666664
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=84.83 E-value=0.62 Score=37.09 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=57.1
Q ss_pred cCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 182 ADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 182 ~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
....++.+||-+|+|. |..+..+++ .|. +|++++.+++..+.+++...+ .++... ..++ ...+.||+
T Consensus 16 ~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~--~~~~------~~~~~fD~ 84 (225)
T d2p7ia1 16 TPFFRPGNLLELGSFK-GDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHSR--FEDA------QLPRRYDN 84 (225)
T ss_dssp GGGCCSSCEEEESCTT-SHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEESC--GGGC------CCSSCEEE
T ss_pred hhhCCCCcEEEEeCCC-cHHHHHHHH-cCC-eEEEEeCcHHHhhhhhccccccccccccc--cccc------cccccccc
Confidence 3445677899999864 666655554 577 899999999999999764332 222221 1111 11237999
Q ss_pred EEEcC-----CCh-HHHHHHH-HHhccCCceEEEe
Q 017460 260 SFECI-----GDT-GMITTAL-QSCCDGWGLAVTL 287 (371)
Q Consensus 260 Vid~~-----g~~-~~l~~~~-~~l~~~~G~~v~~ 287 (371)
|+-.- .++ ..+.... ++|+++ |.++..
T Consensus 85 I~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~ 118 (225)
T d2p7ia1 85 IVLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV 118 (225)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred ccccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence 87522 122 2345555 568997 887653
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=84.80 E-value=0.27 Score=37.56 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=51.3
Q ss_pred EEEEEccChHHHHHHHHHHHc-CCCEEEEE-cCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKAR-GASRIIGV-DTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIGD 266 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~-G~~~vi~~-~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g~ 266 (371)
+|.|+|.|.+|...+..++.. ++ +++++ ++++++. ....+..+. ++ ..+ ...+|+|+.|++.
T Consensus 5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~~------~~~~~~~~~----~~----~~~-~~~~D~Vvi~tp~ 68 (170)
T d1f06a1 5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATLD------TKTPVFDVA----DV----DKH-ADDVDVLFLCMGS 68 (170)
T ss_dssp EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCCS------SSSCEEEGG----GG----GGT-TTTCSEEEECSCT
T ss_pred eEEEECChHHHHHHHHHHHhCCCc-EEEEEEecccccc------cccccccch----hh----hhh-ccccceEEEeCCC
Confidence 589999999999887777665 66 55554 4443321 111121111 11 111 1268999999988
Q ss_pred hHHHHHHHHHhccCCceEEEe
Q 017460 267 TGMITTALQSCCDGWGLAVTL 287 (371)
Q Consensus 267 ~~~l~~~~~~l~~~~G~~v~~ 287 (371)
....+.+.++|..| -.++..
T Consensus 69 ~~h~~~a~~aL~aG-~~vv~~ 88 (170)
T d1f06a1 69 ATDIPEQAPKFAQF-ACTVDT 88 (170)
T ss_dssp TTHHHHHHHHHTTT-SEEECC
T ss_pred cccHHHHHHHHHCC-CcEEEe
Confidence 77788999999985 555543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=84.64 E-value=3.1 Score=31.74 Aligned_cols=103 Identities=20% Similarity=0.315 Sum_probs=61.7
Q ss_pred hcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCc--eEeCCCCCCchHHHHHHHHhCCCcc
Q 017460 181 VADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVT--EFLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 181 ~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~--~vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
...+++|..++=...|.=|+.. .+++. +. +|++++++++..+.++++--. ..+..+ ..++.+.+..+..+.+|
T Consensus 13 ~l~~~~g~~~vD~T~G~GGhs~-~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~--f~~~~~~l~~~~~~~vd 87 (182)
T d1wg8a2 13 LLAVRPGGVYVDATLGGAGHAR-GILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGN--FRHLKRHLAALGVERVD 87 (182)
T ss_dssp HHTCCTTCEEEETTCTTSHHHH-HHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESC--GGGHHHHHHHTTCSCEE
T ss_pred hcCCCCCCEEEEeCCCCcHHHH-HHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehH--HHHHHHHHHHcCCCccC
Confidence 3457788875433235555543 34443 55 999999999998888765332 233332 34555555544334788
Q ss_pred EEEEcCCCh---------------HHHHHHHHHhccCCceEEEecC
Q 017460 259 YSFECIGDT---------------GMITTALQSCCDGWGLAVTLGV 289 (371)
Q Consensus 259 vVid~~g~~---------------~~l~~~~~~l~~~~G~~v~~g~ 289 (371)
.|+==.|-. ..+..+...++++ |+++.+..
T Consensus 88 gIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~f 132 (182)
T d1wg8a2 88 GILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAF 132 (182)
T ss_dssp EEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred EEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEec
Confidence 765322321 1367778888887 88877654
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=84.62 E-value=2.2 Score=32.37 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=52.8
Q ss_pred EEEEEccChHHHHHHHHHHHcC---CCEEEEEcCC--hhhHHHHHHcC-------Cce--------EeCCCC----CCch
Q 017460 189 TVVIFGLGTVGLSVAQGAKARG---ASRIIGVDTN--PEKCEKAKAFG-------VTE--------FLNPND----NNEP 244 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G---~~~vi~~~~~--~~~~~~~~~lg-------~~~--------vi~~~~----~~~~ 244 (371)
+|.|+|-|-+|+++...+.... . .++++... .+....+-++. .+. +++... ...+
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i-~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~ 80 (172)
T d1rm4a1 2 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN 80 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHCSSCSE-EEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCE-EEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence 5789999999999998776543 3 55655332 23333332221 110 111100 0000
Q ss_pred HHHHHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCC
Q 017460 245 VQQVIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVP 290 (371)
Q Consensus 245 ~~~~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~ 290 (371)
...+.+ .. |+|+||||+|.-...+.+...+..+ -+-|.+..+
T Consensus 81 -p~~i~W--~~~gvDiViEcTG~f~~~~~~~~hl~~G-akkViiSAP 123 (172)
T d1rm4a1 81 -PVNLPW--GDMGIDLVIEGTGVFVDRDGAGKHLQAG-AKKVLITAP 123 (172)
T ss_dssp -GGGSCH--HHHTCCEEEECSSSCCBHHHHHHHHHTT-CSCEEESSC
T ss_pred -hHHCCh--hhcCCCEEEecCceEccHHHHHHHHhcC-CceEEeecc
Confidence 111111 12 8999999999755566777778776 544555444
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.46 E-value=0.39 Score=38.42 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=27.4
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
-|+|+|+|+.|+.|+..|..+|. +|.+++..
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~-kV~viE~~ 35 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDK-KVMVLDFV 35 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCC-CEEEECCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 37899999999999999999999 89999843
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.22 E-value=0.46 Score=37.50 Aligned_cols=30 Identities=33% Similarity=0.477 Sum_probs=27.1
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
|+|+|+|+.|+.++..|..+|. +|.+++..
T Consensus 6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGA-RAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence 7888999999999999999999 89998764
|
| >d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: GroES domain: Chaperonin-10 (GroES) species: Thermus thermophilus [TaxId: 274]
Probab=84.08 E-value=0.66 Score=31.60 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=19.0
Q ss_pred eEEEEEeeCCCCC---------CCCCCCEEEee
Q 017460 64 CCRIVESVGPGVT---------EFNEGEHVLTV 87 (371)
Q Consensus 64 ~~G~V~~~G~~v~---------~~~~Gd~V~~~ 87 (371)
..|+|+++|++.. ..++||+|+..
T Consensus 37 ~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~ 69 (96)
T d1we3o_ 37 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFA 69 (96)
T ss_dssp SEEEESCCCCCEECTTSCEECCSCCTTCEEEEC
T ss_pred eEEEEeeecceEecCCCCEEEeeEEeCCEEEEc
Confidence 4799999998742 38899999865
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=83.90 E-value=0.42 Score=40.36 Aligned_cols=32 Identities=38% Similarity=0.664 Sum_probs=27.9
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
-|+|+|+|..|+.|+.-|...|+ +|++++..+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 48999999999999988888899 899997643
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.69 E-value=1.8 Score=37.50 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=39.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEc---CChhhHHHHHHcCCceEe
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVD---TNPEKCEKAKAFGVTEFL 236 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~lg~~~vi 236 (371)
+++++.+|+-..+|..|++.+..|+.+|. +++++. .+++|++.++.+|++.+.
T Consensus 140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGi-k~~Iv~P~~~~~~K~~~ira~GAeVi~ 195 (382)
T d1wkva1 140 RVEKGSLVADATSSNFGVALSAVARLYGY-RARVYLPGAAEEFGKLLPRLLGAQVIV 195 (382)
T ss_dssp TSCTTCEEEEECCHHHHHHHHHHHHHTTC-EEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCEEEEeCCcHHHHHHHHHHHHcCC-CEEEEeeccccccccccccccCcceee
Confidence 46777765444579999999999999999 555543 355788888999997544
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.65 E-value=2.9 Score=35.14 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=62.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHH-HcCCCEEEEEcCChhhHHHH----HHcCCceEeCCCCCCchHHHHHHHHhCCCccE
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAK-ARGASRIIGVDTNPEKCEKA----KAFGVTEFLNPNDNNEPVQQVIKRITDGGADY 259 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~-~~G~~~vi~~~~~~~~~~~~----~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dv 259 (371)
+...++.|+|+|..+..-+..+. .+..++|.+..+++++++.+ +..+.....+. .+.+ .+.|+
T Consensus 123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~-------~~a~-----~~aDi 190 (320)
T d1omoa_ 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP-------AEEA-----SRCDV 190 (320)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC-------HHHH-----TSSSE
T ss_pred CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch-------hhhh-----ccccE
Confidence 44578889999998887666654 46788999999999887654 44555433322 1122 26899
Q ss_pred EEEcCCChHH-HHHHHHHhccCCceEEEecCCCC
Q 017460 260 SFECIGDTGM-ITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 260 Vid~~g~~~~-l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
|+-++.+... +. .+.++++ -.+..+|....
T Consensus 191 V~taT~s~~P~~~--~~~l~~G-~hv~~iGs~~p 221 (320)
T d1omoa_ 191 LVTTTPSRKPVVK--AEWVEEG-THINAIGADGP 221 (320)
T ss_dssp EEECCCCSSCCBC--GGGCCTT-CEEEECSCCST
T ss_pred EEEeccCcccccc--hhhcCCC-CeEeecCCccc
Confidence 9999886532 22 1357886 77778887644
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.60 E-value=0.58 Score=38.39 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
+..+|.++|-+|+|+ |...+..+...+. +|++++-++..++.+++
T Consensus 51 g~~~g~~vLDiGcG~-g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~ 95 (263)
T d2g72a1 51 GEVSGRTLIDIGSGP-TVYQLLSACSHFE-DITMTDFLEVNRQELGR 95 (263)
T ss_dssp SCSCCSEEEEETCTT-CCGGGTTGGGGCS-EEEEECSCHHHHHHHHH
T ss_pred CCCCCcEEEEeccCC-CHHHHHHhcccCC-eEEEEeCCHHHHHHHHH
Confidence 455688999999875 4333333434444 99999999999998865
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.31 E-value=1.5 Score=37.92 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=59.0
Q ss_pred ccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCceE--------------eCCCCCCchHHHHHHHHhCC
Q 017460 194 GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVTEF--------------LNPNDNNEPVQQVIKRITDG 255 (371)
Q Consensus 194 Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~~v--------------i~~~~~~~~~~~~v~~~~~g 255 (371)
+-++.|.-++.+|+..|+++|++.+.+++-.+.+++ .+.... +... ..+.- .+....+.
T Consensus 52 ~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~--~~Da~-~~~~~~~~ 128 (375)
T d2dula1 52 ALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVIN--HDDAN-RLMAERHR 128 (375)
T ss_dssp SSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEE--ESCHH-HHHHHSTT
T ss_pred cCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEee--hhhhh-hhhHhhcC
Confidence 446668889999999998899999999998887753 232110 0000 11121 12222222
Q ss_pred CccEE-EEcCCChH-HHHHHHHHhccCCceEEEec
Q 017460 256 GADYS-FECIGDTG-MITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 256 g~dvV-id~~g~~~-~l~~~~~~l~~~~G~~v~~g 288 (371)
.||+| ||..|++. .++.++++++.+ |.+....
T Consensus 129 ~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vTa 162 (375)
T d2dula1 129 YFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVTA 162 (375)
T ss_dssp CEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred cCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEEe
Confidence 79975 89999753 588999999986 7765553
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=83.18 E-value=0.48 Score=40.02 Aligned_cols=32 Identities=41% Similarity=0.695 Sum_probs=28.0
Q ss_pred EEEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
-|+|+|+|..|+.++.-|...|+ +|++++..+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGA-KVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 38999999999999888888999 899998654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.05 E-value=1.9 Score=35.58 Aligned_cols=96 Identities=11% Similarity=0.219 Sum_probs=56.1
Q ss_pred cCCCCCCEEEEEcc--ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHH----HHcCCceEe-CCCCCCchHHHHHHHHhC
Q 017460 182 ADISKGSTVVIFGL--GTVGLSVAQGAKARGASRIIGVDTNPEKCEKA----KAFGVTEFL-NPNDNNEPVQQVIKRITD 254 (371)
Q Consensus 182 ~~~~~~~~VlI~Ga--g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~lg~~~vi-~~~~~~~~~~~~v~~~~~ 254 (371)
...++|++||=.-| |+=-...++ ...-.+|++.+.++.|.+.+ +.+|+..++ ... +.... .....
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~---l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~--~~~~~---~~~~~ 169 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILE---VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGD--GRYPS---QWCGE 169 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHH---HCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECC--TTCTH---HHHTT
T ss_pred cCccccceeEeccCccccchhhhhh---hhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecc--ccccc---hhccc
Confidence 46788999998743 543333333 33223899999999998766 557875332 221 11111 11222
Q ss_pred CCccEE-EE--cCCCh-------------------------HHHHHHHHHhccCCceEEE
Q 017460 255 GGADYS-FE--CIGDT-------------------------GMITTALQSCCDGWGLAVT 286 (371)
Q Consensus 255 gg~dvV-id--~~g~~-------------------------~~l~~~~~~l~~~~G~~v~ 286 (371)
+.||.| +| |+|.. ..+..+++.++++ |++|.
T Consensus 170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvY 228 (284)
T d1sqga2 170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVY 228 (284)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEE
T ss_pred ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEE
Confidence 378876 55 55542 3466677778886 77664
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=82.62 E-value=0.48 Score=39.14 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=27.1
Q ss_pred CEEEEEccChHHHHHHH-HHHHcCCCEEEEEcCCh
Q 017460 188 STVVIFGLGTVGLSVAQ-GAKARGASRIIGVDTNP 221 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~-la~~~G~~~vi~~~~~~ 221 (371)
-.|+|+|+|+.|+.++. +|+..|. +|.+++..+
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~ 67 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV 67 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence 44999999999998765 5566799 999998765
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=82.58 E-value=1.4 Score=34.39 Aligned_cols=73 Identities=25% Similarity=0.311 Sum_probs=47.3
Q ss_pred hhcCCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCC-ceEeCCCCCCchHHHHHHHHhCCCcc
Q 017460 180 NVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGV-TEFLNPNDNNEPVQQVIKRITDGGAD 258 (371)
Q Consensus 180 ~~~~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~-~~vi~~~~~~~~~~~~v~~~~~gg~d 258 (371)
...++ .|++||=.|+|+ |.+++. +..+|+++|+.++.+++..+.+++.-. ..++..+ + .+ .++.||
T Consensus 43 ~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D-----~----~~-l~~~fD 109 (197)
T d1ne2a_ 43 NDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD-----V----SE-ISGKYD 109 (197)
T ss_dssp HHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC-----G----GG-CCCCEE
T ss_pred HcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEe-----h----hh-cCCcce
Confidence 44455 589999998764 444443 445687789999999999998877543 2333321 1 11 234899
Q ss_pred EEEEcCC
Q 017460 259 YSFECIG 265 (371)
Q Consensus 259 vVid~~g 265 (371)
+||-..+
T Consensus 110 ~Vi~NPP 116 (197)
T d1ne2a_ 110 TWIMNPP 116 (197)
T ss_dssp EEEECCC
T ss_pred EEEeCcc
Confidence 9986543
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=82.50 E-value=0.55 Score=38.67 Aligned_cols=60 Identities=18% Similarity=0.370 Sum_probs=37.2
Q ss_pred EEEEEcc-ChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCC
Q 017460 189 TVVIFGL-GTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265 (371)
Q Consensus 189 ~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g 265 (371)
+|||+|+ |.+|...+..+...|. ++++.+.... + ..|.. + .+.+.+...+ ++|+||.+.+
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g~--~v~~~~~~~~------~----~~Dl~--~---~~~~~~~i~~~~~D~Vih~Aa 63 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVGN--LIALDVHSKE------F----CGDFS--N---PKGVAETVRKLRPDVIVNAAA 63 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTSE--EEEECTTCSS------S----CCCTT--C---HHHHHHHHHHHCCSEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC--EEEEECCCcc------c----cCcCC--C---HHHHHHHHHHcCCCEEEEecc
Confidence 6999986 9999998887777774 5555443321 1 11222 1 1234444444 7899999886
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=82.47 E-value=0.52 Score=39.92 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=27.7
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
|||+|+|..|+.|+--|...|+ +|++++..+
T Consensus 8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~ 38 (336)
T d2bs2a2 8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP 38 (336)
T ss_dssp EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence 8999999999999999988999 899997654
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=82.03 E-value=5.3 Score=29.88 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=57.4
Q ss_pred EEEEEccChHHHHHHHHHHHc-CCCEEEEEcC---ChhhHHHHHHcCC-------c-------eEeCCCC---CCchHHH
Q 017460 189 TVVIFGLGTVGLSVAQGAKAR-GASRIIGVDT---NPEKCEKAKAFGV-------T-------EFLNPND---NNEPVQQ 247 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la~~~-G~~~vi~~~~---~~~~~~~~~~lg~-------~-------~vi~~~~---~~~~~~~ 247 (371)
+|.|+|-|-+|+++...+... .. .++++.. +.+....+-++-- . ..++.+. ....-..
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~~-~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~ 80 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKDI-EVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS 80 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred eEEEECCCHHHHHHHHHHhhCCCc-EEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence 578999999999999988755 45 6666642 3455555543221 1 0111100 0000011
Q ss_pred HHHHHhCC-CccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 248 VIKRITDG-GADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 248 ~v~~~~~g-g~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
++.+ .. ++|+|+||+|.-...+.+...+..+ .+-|.+..+.
T Consensus 81 ~i~W--~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~ 122 (166)
T d2b4ro1 81 QIPW--GKCQVDVVCESTGVFLTKELASSHLKGG-AKKVIMSAPP 122 (166)
T ss_dssp GCCH--HHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCC
T ss_pred Hccc--cccCCCEEEEecccccchhhhhhhhccC-CCEEEEeccc
Confidence 1111 12 8999999999766667777888876 5555555443
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=81.97 E-value=0.9 Score=35.40 Aligned_cols=89 Identities=21% Similarity=0.232 Sum_probs=57.9
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFEC 263 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~ 263 (371)
+.++.+||-+|+|. |..+..+ . ++++++.++...+.+++.+...+...- .++ ...++.||+|+..
T Consensus 34 ~~~~~~vLDiGcG~-G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~~~~~d~---~~l-----~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 34 LLPEGRGVEIGVGT-GRFAVPL-----K-IKIGVEPSERMAEIARKRGVFVLKGTA---ENL-----PLKDESFDFALMV 98 (208)
T ss_dssp HCCSSCEEEETCTT-STTHHHH-----T-CCEEEESCHHHHHHHHHTTCEEEECBT---TBC-----CSCTTCEEEEEEE
T ss_pred hCCCCeEEEECCCC-ccccccc-----c-eEEEEeCChhhcccccccccccccccc---ccc-----ccccccccccccc
Confidence 45667899999763 4444433 2 678999999999999887765333211 111 0112379999864
Q ss_pred CC-----Ch-HHHHHHHHHhccCCceEEEec
Q 017460 264 IG-----DT-GMITTALQSCCDGWGLAVTLG 288 (371)
Q Consensus 264 ~g-----~~-~~l~~~~~~l~~~~G~~v~~g 288 (371)
.. +. ..++...+.|+++ |+++...
T Consensus 99 ~~l~h~~d~~~~l~~~~~~L~pg-G~l~i~~ 128 (208)
T d1vlma_ 99 TTICFVDDPERALKEAYRILKKG-GYLIVGI 128 (208)
T ss_dssp SCGGGSSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred cccccccccccchhhhhhcCCCC-ceEEEEe
Confidence 32 22 2578889999997 9887764
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=81.85 E-value=5 Score=33.91 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=61.5
Q ss_pred CCCCCEEEEEccChHHHHHHHHH-HHcCCCEEEEEcCChhhHHHH-HHc----CCceEeCCCCCCchHHHHHHHHhCCCc
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGA-KARGASRIIGVDTNPEKCEKA-KAF----GVTEFLNPNDNNEPVQQVIKRITDGGA 257 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la-~~~G~~~vi~~~~~~~~~~~~-~~l----g~~~vi~~~~~~~~~~~~v~~~~~gg~ 257 (371)
-+...++.|+|+|.-+.+-++.. ..++.++|.+.++++++.+.+ +++ |..... . .+..+.++ +.
T Consensus 125 ~~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~-~----~s~~eav~-----~A 194 (340)
T d1x7da_ 125 RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRR-A----SSVAEAVK-----GV 194 (340)
T ss_dssp CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEE-C----SSHHHHHT-----TC
T ss_pred ccCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCcee-c----CCHHHHHh-----cC
Confidence 34567889999998888766644 567888999999998876544 333 433222 1 23334432 68
Q ss_pred cEEEEcCCChH---HHHHHHHHhccCCceEEEecCCCC
Q 017460 258 DYSFECIGDTG---MITTALQSCCDGWGLAVTLGVPKL 292 (371)
Q Consensus 258 dvVid~~g~~~---~l~~~~~~l~~~~G~~v~~g~~~~ 292 (371)
|+|+-|+.++. .+. .+.++++ -.+..+|....
T Consensus 195 DIi~t~Tas~s~~Pv~~--~~~l~pG-~hI~aiGs~~p 229 (340)
T d1x7da_ 195 DIITTVTADKAYATIIT--PDMLEPG-MHLNAVGGDCP 229 (340)
T ss_dssp SEEEECCCCSSEEEEEC--GGGCCTT-CEEEECSCCBT
T ss_pred CceeeccccCCCCcccc--hhhcCCC-CEEeecccchh
Confidence 99998775431 222 2457775 66667876544
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=81.85 E-value=1.1 Score=34.43 Aligned_cols=92 Identities=13% Similarity=0.166 Sum_probs=55.7
Q ss_pred CCCCCEEEEE--ccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH----cCCc---eEeCCCCCCchHHHHHHHHh-
Q 017460 184 ISKGSTVVIF--GLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA----FGVT---EFLNPNDNNEPVQQVIKRIT- 253 (371)
Q Consensus 184 ~~~~~~VlI~--Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----lg~~---~vi~~~~~~~~~~~~v~~~~- 253 (371)
..+|.+||=+ |.|.+|+-|+ ..|+++|+.++.+.+..+.+++ ++.. .++. .+..+.+..+.
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~----srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~-----~D~~~~l~~~~~ 109 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAV----SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK-----MDANRALEQFYE 109 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHH----HTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE-----SCHHHHHHHHHH
T ss_pred hcCCCEEEEcccccccccceee----ecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccc-----ccchhhhhhhcc
Confidence 4568888876 4577777543 4788899999999988777643 4543 2332 24445555543
Q ss_pred CC-CccEEEEcCC--C---hHHHHHHHH--HhccCCceEE
Q 017460 254 DG-GADYSFECIG--D---TGMITTALQ--SCCDGWGLAV 285 (371)
Q Consensus 254 ~g-g~dvVid~~g--~---~~~l~~~~~--~l~~~~G~~v 285 (371)
.+ .||+||---+ . ...++...+ .++++ |.++
T Consensus 110 ~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~-giIi 148 (182)
T d2fhpa1 110 EKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNE-AVIV 148 (182)
T ss_dssp TTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEE-EEEE
T ss_pred cCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCC-EEEE
Confidence 34 8999875332 1 123444433 36775 6554
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.65 E-value=1.3 Score=34.48 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=41.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCC-CEEEEEcCChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCCCccEEEEcCC
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGA-SRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDGGADYSFECIG 265 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~gg~dvVid~~g 265 (371)
++|||+|+ |.+|...+..+...|. .+|++..+++... ...+- .. ..++.+. .....+.+|.|+.++|
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-------~~~~~-~~--~~d~~~~-~~~~~~~~d~vi~~~g 71 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------HPRLD-NP--VGPLAEL-LPQLDGSIDTAFCCLG 71 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------CTTEE-CC--BSCHHHH-GGGCCSCCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-------ccccc-cc--ccchhhh-hhccccchheeeeeee
Confidence 68999997 9999999998888885 2666666543210 01111 11 1223322 2222337899999987
Q ss_pred C
Q 017460 266 D 266 (371)
Q Consensus 266 ~ 266 (371)
.
T Consensus 72 ~ 72 (212)
T d2a35a1 72 T 72 (212)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=81.50 E-value=2 Score=34.04 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=57.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCC-----h--------hhHHHHHHcCCceEeCCCCCCchHHHHHH
Q 017460 184 ISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTN-----P--------EKCEKAKAFGVTEFLNPNDNNEPVQQVIK 250 (371)
Q Consensus 184 ~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~-----~--------~~~~~~~~lg~~~vi~~~~~~~~~~~~v~ 250 (371)
--.+.+++++|+|..|...+++....+.++++.+++. . .+..+.+..... ....++.+.++
T Consensus 23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~ 96 (222)
T d1vl6a1 23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE------RLSGDLETALE 96 (222)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT------CCCSCHHHHHT
T ss_pred ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcch------hhhcchHhhcc
Confidence 3457899999999999998898888899899999874 1 122222221111 00223333322
Q ss_pred HHhCCCccEEEEcCCChHHHHHHHHHhccCCceEEEecCCC
Q 017460 251 RITDGGADYSFECIGDTGMITTALQSCCDGWGLAVTLGVPK 291 (371)
Q Consensus 251 ~~~~gg~dvVid~~g~~~~l~~~~~~l~~~~G~~v~~g~~~ 291 (371)
+.++++-.......-++.+..+.+. -.+.-++.+.
T Consensus 97 -----g~~~~~g~~~~~~~~~e~m~~~~~r-PIIFpLSNPt 131 (222)
T d1vl6a1 97 -----GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV 131 (222)
T ss_dssp -----TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS
T ss_pred -----CcceeccccccccccHHHHhhcCCC-CEEEecCCCc
Confidence 5777777665433334566667665 5555565543
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.49 E-value=0.65 Score=40.46 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=25.2
Q ss_pred EEEEEccChHHHHHHHHH-HH-----cCCCEEEEEcCCh
Q 017460 189 TVVIFGLGTVGLSVAQGA-KA-----RGASRIIGVDTNP 221 (371)
Q Consensus 189 ~VlI~Gag~~G~~ai~la-~~-----~G~~~vi~~~~~~ 221 (371)
-|+|+|+|+.|++|+..+ ++ .|. +|.++++..
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~ 71 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA 71 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence 589999999998866544 42 688 999998764
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=81.47 E-value=1.4 Score=32.42 Aligned_cols=37 Identities=41% Similarity=0.611 Sum_probs=29.8
Q ss_pred CEEEEEccChHHHHHHHHHHHcC-CCEEEEEcCChhhH
Q 017460 188 STVVIFGLGTVGLSVAQGAKARG-ASRIIGVDTNPEKC 224 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G-~~~vi~~~~~~~~~ 224 (371)
.+|.|+|+|.+|...+..+...| +.+++.++.++++.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~ 39 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV 39 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence 57889999999988888776666 45889999888764
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=81.29 E-value=0.68 Score=37.70 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=27.3
Q ss_pred EEEEccChHHHHHHHHHHHcCCCEEEEEcCC
Q 017460 190 VVIFGLGTVGLSVAQGAKARGASRIIGVDTN 220 (371)
Q Consensus 190 VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~ 220 (371)
++|+|+|+.|+.|+..|..+|. +|.+++..
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~ 33 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS 33 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 6888999999999999999999 99999864
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=81.15 E-value=1.8 Score=35.35 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=42.2
Q ss_pred EEEEcc-ChHHHHHHHHHHHcCCCEEEEEc--CChhhHHHHHHcCCceEeCCCCCCchHHHHHHHHhCC-CccEEEEcCC
Q 017460 190 VVIFGL-GTVGLSVAQGAKARGASRIIGVD--TNPEKCEKAKAFGVTEFLNPNDNNEPVQQVIKRITDG-GADYSFECIG 265 (371)
Q Consensus 190 VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~v~~~~~g-g~dvVid~~g 265 (371)
|||+|+ |-+|...+..+...|..+|++++ .+..+.....++......+. .+..+.+.....- .+++|+-..+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~aa 77 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK----EDFLIQIMAGEEFGDVEAIFHEGA 77 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH----HHHHHHHHTTCCCSSCCEEEECCS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccc----hHHHHHHhhhhcccchhhhhhhcc
Confidence 789985 99999988888888975788875 33334444455544333322 1233333222222 6777776543
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=80.54 E-value=1.3 Score=32.38 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=30.0
Q ss_pred CEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHH
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCE 225 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~ 225 (371)
.+|.|+|+|.+|...+.++...+...++.++.++++.+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~ 39 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQ 39 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccch
Confidence 36889999999988877776667668999988777643
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.39 E-value=1.6 Score=32.17 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=37.2
Q ss_pred hHHhHhhhhcCCCCCCEEEEE--ccChHHHHHHHHHHHcCCCEEEEEcCCh
Q 017460 173 AGLGAAWNVADISKGSTVVIF--GLGTVGLSVAQGAKARGASRIIGVDTNP 221 (371)
Q Consensus 173 ~a~~~l~~~~~~~~~~~VlI~--Gag~~G~~ai~la~~~G~~~vi~~~~~~ 221 (371)
|....+ ..+..++..|+|+ |+|-+|.-+++.+..+|+ +|..+++.+
T Consensus 27 t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~ 74 (156)
T d1djqa2 27 TPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH 74 (156)
T ss_dssp CHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence 455544 3566778898887 678999999999999999 999998765
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=80.36 E-value=1.9 Score=31.54 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=30.6
Q ss_pred CEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhHH
Q 017460 188 STVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKCE 225 (371)
Q Consensus 188 ~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~~ 225 (371)
.+|.|+|+|.+|..++..+...|. .+++.++.++++.+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~ 40 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE 40 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence 468899999999998888877764 58999998887653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.28 E-value=0.27 Score=40.07 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHHHcCCCEEEEEcCChhhHHHHHH
Q 017460 183 DISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKA 229 (371)
Q Consensus 183 ~~~~~~~VlI~Gag~~G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~ 229 (371)
...+|.+||=+|+|. |..++.+++. ++..|++++-++...+.+++
T Consensus 48 ~~~~g~~vLDlGcG~-G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~ 92 (257)
T d2a14a1 48 GGLQGDTLIDIGSGP-TIYQVLAACD-SFQDITLSDFTDRNREELEK 92 (257)
T ss_dssp TSCCEEEEEESSCTT-CCGGGTTGGG-TEEEEEEEESCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCC-CHhHHHHhcc-ccCcEEEecCCHHHHHHHHH
Confidence 456788888888764 4444444444 44489999999998888854
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=80.25 E-value=2 Score=32.19 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=33.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHHHcCC-CEEEEEcCChhhH
Q 017460 185 SKGSTVVIFGLGTVGLSVAQGAKARGA-SRIIGVDTNPEKC 224 (371)
Q Consensus 185 ~~~~~VlI~Gag~~G~~ai~la~~~G~-~~vi~~~~~~~~~ 224 (371)
.+..+|.|+|+|.+|...+..+...|. .+++.++.++++.
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a 58 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL 58 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence 345699999999999999888888874 6899999887664
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.16 E-value=2.1 Score=36.06 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=26.7
Q ss_pred CEEEEEcc-ChHHHHHHHHHHHcCCCEEEEEc
Q 017460 188 STVVIFGL-GTVGLSVAQGAKARGASRIIGVD 218 (371)
Q Consensus 188 ~~VlI~Ga-g~~G~~ai~la~~~G~~~vi~~~ 218 (371)
++|||+|+ |-+|...+..+...|. .|++++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld 33 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVID 33 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence 68999986 9999999999989998 888885
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=80.08 E-value=2.6 Score=30.90 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=46.6
Q ss_pred hhhcCCCCCCEEEEEc-cChHHHHHHHHHHHcC-CCEEEEEcCChhhHHHHHHcCCceEeCC
Q 017460 179 WNVADISKGSTVVIFG-LGTVGLSVAQGAKARG-ASRIIGVDTNPEKCEKAKAFGVTEFLNP 238 (371)
Q Consensus 179 ~~~~~~~~~~~VlI~G-ag~~G~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~lg~~~vi~~ 238 (371)
++.+++..-+.+++.- .-..-.+++..++.++ ..++++...+++..+.++++|++.++++
T Consensus 64 L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p 125 (153)
T d1id1a_ 64 LKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSP 125 (153)
T ss_dssp HHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECH
T ss_pred HHHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECH
Confidence 4677888777777763 4456677777887764 3389999999999999999999999865
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