Citrus Sinensis ID: 017467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcEEEEcccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccccccccccccHHHHEEEEcccccccccccccccccEEEEEEEccccccEEEEcccccccccccEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccEEEHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEccccccccEEEccccEEEEEEEcccccEEEEEcccccccccHHEEEccccccHHHHHHHc
Coil and Loop (DISEMBL)
MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFsasgyersdvmviDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYgaennqninenILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQqrvreapnpenvAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEkqrkesappvipsenssqKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRkvspsgwsegeckgkagwfpsanvekrqripvsnvadeay
Flexible Loop (DISEMBL)
MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEklyrstrgtkdfQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENnqnineniLPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAvevskrqqrvreapnpenvAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKqrkesappvipsensSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSpsgwsegeckgkagwfpsanvekrqripvsnvadeay
Low Complexity Region (SEG)
MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMailgkeaaaalaaieaQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY
Disordered region (IsUnstruct)
******************QQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDAR************LL***VLDPLRAMI***********************************************************ANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE*************************AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWF*********************
Disordered Region (DISOPRED)
****************************************************************************TRGTKDFQRDLVKVAEV**********AGTKLSEDCCRY*************************************LSSQVLDPL*AM********************************************************************************************************************************************LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE***************
Disordered Region (DISEMBL)
******************QQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY*************************NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA********************SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY
Disordered Region (DISPRO)
MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEK*****************KAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQRVREAPNPENVAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q9Z0R4	1714	Intersectin-1 OS=Mus musc	yes	no	0.204	0.044	0.385	2e-06
Q2KJB5	505	Nostrin OS=Bos taurus GN=	yes	no	0.202	0.148	0.397	2e-06
Q9WVE9	1217	Intersectin-1 OS=Rattus n	no	no	0.204	0.062	0.352	5e-06
Q15811	1721	Intersectin-1 OS=Homo sap	yes	no	0.177	0.038	0.36	9e-06
Q5ZLR6	764	Rho guanine nucleotide ex	no	no	0.159	0.077	0.419	1e-05
O42287	1270	Intersectin-1 OS=Xenopus	N/A	no	0.150	0.044	0.4	2e-05
Q5XXR3	772	Rho guanine nucleotide ex	no	no	0.185	0.089	0.337	2e-05
Q9R0C8	847	Guanine nucleotide exchan	no	no	0.140	0.061	0.471	2e-05
Q9UKW4	847	Guanine nucleotide exchan	no	no	0.140	0.061	0.471	3e-05
Q8K4I3	771	Rho guanine nucleotide ex	no	no	0.185	0.089	0.342	3e-05

>sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=2

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 290 PVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKA 347
           P+  S   S K VY+   A++PF + S  E+++  GD V+V   +    GW  GE KGK 
Sbjct: 729 PLTISAQESVKVVYY--RALYPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKT 786

Query: 348 GWFPSANVEKRQRIPVSNVADEA 370
           GWFP+   EK   IP + V   A
Sbjct: 787 GWFPANYAEK---IPENEVPTPA 806

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.
Mus musculus (taxid: 10090)

>sp|Q2KJB5|NOSTN_BOVIN Nostrin OS=Bos taurus GN=NOSTRIN PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 292 IPSENSSQKAVY----FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA 347
           IPS +S+   V      L +A++PF A  + EL L  GD V + K    GW  G  KGK 
Sbjct: 424 IPSPSSTASGVTQLGNGLCKALYPFQARQDDELDLEKGDIVTIHKKKDEGWWFGSLKGKK 483

Query: 348 GWFPSANVEKRQRIPVSNVADEA 370
           G FP+A VE+   +P+ N  D A
Sbjct: 484 GHFPAAYVEE---LPL-NAGDTA 502

Multivalent adapter protein which may decrease NOS3 activity by inducing its translocation away from the plasma membrane.

Bos taurus (taxid: 9913)

>sp|Q9WVE9|ITSN1_RAT Intersectin-1 OS=Rattus norvegicus GN=Itsn1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 290 PVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVR-------KVSPSGWSEGE 342
           P+  S   S K VY+   A++PF + S  E+++  GD V+V+       +    GW  GE
Sbjct: 728 PLTISAQESAKVVYY--RALYPFESRSHDEITIQPGDIVMVKGEWVDESQTGEPGWLGGE 785

Query: 343 CKGKAGWFPSANVEKRQRIPVSNVADEA 370
            KGK GWFP+   EK   IP + +   A
Sbjct: 786 PKGKTGWFPANYAEK---IPENEIPTPA 810

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.

Rattus norvegicus (taxid: 10116)

>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 9/75 (12%)

Query: 290 PVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVR-------KVSPSGWSEGE 342
           P+  S   + K VY+   A++PF + S  E+++  GD V+V+       +    GW  GE
Sbjct: 731 PLTISAQENVKVVYY--RALYPFESRSHDEITIQPGDIVMVKGEWVDESQTGEPGWLGGE 788

Query: 343 CKGKAGWFPSANVEK 357
            KGK GWFP+   EK
Sbjct: 789 LKGKTGWFPANYAEK 803

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Isoform 1 could be involved in brain-specific synaptic vesicle recycling. Inhibits ARHGAP31 activity toward RAC1.

Homo sapiens (taxid: 9606)

>sp|Q5ZLR6|ARHG6_CHICK Rho guanine nucleotide exchange factor 6 OS=Gallus gallus GN=ARHGEF6 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           +EN S + V    +A   F   +E ELS+  GD + V +V   GW EG   GK GWFPS 
Sbjct: 148 TENGSHQLV---VKARFNFKQTNEDELSVNKGDIIYVTRVEEGGWWEGTLNGKTGWFPSN 204

Query: 354 NV 355
            V
Sbjct: 205 YV 206

Acts as a RAC1 guanine nucleotide exchange factor (GEF).

Gallus gallus (taxid: 9031)

>sp|O42287|ITSN1_XENLA Intersectin-1 OS=Xenopus laevis GN=itsn1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 300 KAVYFLAEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 357
           K VY+   A++PF A S  E+++  GD ++V   +    GW  GE KGK GWFP+   E+
Sbjct: 733 KVVYY--RALYPFDARSHDEITIEPGDIIMVDESQTGEPGWLGGELKGKTGWFPANYAER 790

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Xenopus laevis (taxid: 8355)

>sp|Q5XXR3|ARHG6_RAT Rho guanine nucleotide exchange factor 6 OS=Rattus norvegicus GN=Arhgef6 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHP--------FTAASEKELSLGVGDYVVVRKVSPSGW 338
           + P   P + S +KA        H         F   +E ELS+  GD + V +V   GW
Sbjct: 138 AVPSTTPEQQSEEKAAEMTENGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGW 197

Query: 339 SEGECKGKAGWFPSANV 355
            EG   G+ GWFPS  V
Sbjct: 198 WEGTLNGRTGWFPSNYV 214

Acts as a RAC1 guanine nucleotide exchange factor (GEF).

Rattus norvegicus (taxid: 10116)

>sp|Q9R0C8|VAV3_MOUSE Guanine nucleotide exchange factor VAV3 OS=Mus musculus GN=Vav3 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 356
           +A A + F A   +ELSL  GD V +  K+S +GW  GE  G+ GWFPS  VE
Sbjct: 792 IAIARYDFCARDMRELSLLKGDMVKIYTKMSANGWWRGEVNGRVGWFPSTYVE 844

Exchange factor for GTP-binding proteins RhoA, RhoG and, to a lesser extent, Rac1. Binds physically to the nucleotide-free states of those GTPases (By similarity). Plays an important role in angiogenesis. Its recruitement by phosphorylated EPHA2 is critical for EFNA1-induced RAC1 GTPase activation and vascular endothelial cell migration and assembly. May be important for integrin-mediated signaling, at least in some cell types. In osteoclasts, along with SYK tyrosine kinase, required for signaling through integrin alpha-v/beta-1 (ITAGV-ITGB1), a crucial event for osteoclast proper cytoskeleton organization and function. This signaling pathway involves RAC1, but not RHO, activation. Necessary for proper wound healing. In the course of wound healing, required for the phagocytotic cup formation preceding macrophage phagocytosis of apoptotic neutrophils. Responsible for integrin beta-2-mediated macrophage adhesion and, to a lesser extent, contributes to beta-3-mediated adhesion. Does not affect integrin beta-1-mediated adhesion.

Mus musculus (taxid: 10090)

>sp|Q9UKW4|VAV3_HUMAN Guanine nucleotide exchange factor VAV3 OS=Homo sapiens GN=VAV3 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 356
           +A A + F A   +ELSL  GD V +  K+S +GW  GE  G+ GWFPS  VE
Sbjct: 792 IAIARYDFCARDMRELSLLKGDVVKIYTKMSANGWWRGEVNGRVGWFPSTYVE 844

Exchange factor for GTP-binding proteins RhoA, RhoG and, to a lesser extent, Rac1. Binds physically to the nucleotide-free states of those GTPases. Plays an important role in angiogenesis. Its recruitement by phosphorylated EPHA2 is critical for EFNA1-induced RAC1 GTPase activation and vascular endothelial cell migration and assembly (By similarity). May be important for integrin-mediated signaling, at least in some cell types. In osteoclasts, along with SYK tyrosine kinase, required for signaling through integrin alpha-v/beta-1 (ITAGV-ITGB1), a crucial event for osteoclast proper cytoskeleton organization and function. This signaling pathway involves RAC1, but not RHO, activation. Necessary for proper wound healing. In the course of wound healing, required for the phagocytotic cup formation preceding macrophage phagocytosis of apoptotic neutrophils. Responsible for integrin beta-2 (ITGB2)-mediated macrophage adhesion and, to a lesser extent, contributes to beta-3 (ITGB3)-mediated adhesion. Does not affect integrin beta-1 (ITGB1)-mediated adhesion.

Homo sapiens (taxid: 9606)

>sp|Q8K4I3|ARHG6_MOUSE Rho guanine nucleotide exchange factor 6 OS=Mus musculus GN=Arhgef6 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 287 SAPPVIPSENSSQKAVY-------FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS 339
           + P   P ++S +KA          + +A   F   +E ELS+  GD + V +V   GW 
Sbjct: 138 AVPSTAPEQHSEEKAEMTENGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWW 197

Query: 340 EGECKGKAGWFPSANV 355
           EG   G+ GWFPS  V
Sbjct: 198 EGTLNGRTGWFPSNYV 213

Acts as a RAC1 guanine nucleotide exchange factor (GEF).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
186511991	351	SH3 domain-containing protein [Arabidops	0.946	1.0	0.754	1e-164
297800258	351	AT4g18060/F15J5_30 [Arabidopsis lyrata s	0.946	1.0	0.754	1e-163
16974680	351	SH3 domain-containing protein 3 [Arabido	0.946	1.0	0.743	1e-160
255557451	347	vav3, putative [Ricinus communis] gi|223	0.935	1.0	0.776	1e-156
224116716	349	predicted protein [Populus trichocarpa]	0.927	0.985	0.779	1e-155
449500573	348	PREDICTED: uncharacterized LOC101214418	0.938	1.0	0.749	1e-155
224114387	352	predicted protein [Populus trichocarpa]	0.935	0.985	0.755	1e-154
225463364	348	PREDICTED: uncharacterized protein LOC10	0.938	1.0	0.743	1e-153
148270940	348	Src homology-3 domain protein 3 [Cucumis	0.938	1.0	0.741	1e-153
356525323	348	PREDICTED: uncharacterized protein LOC10	0.938	1.0	0.746	1e-152

>gi|186511991|ref|NP_193540.3| SH3 domain-containing protein [Arabidopsis thaliana] gi|21928139|gb|AAM78097.1| AT4g18060/F15J5_30 [Arabidopsis thaliana] gi|25090269|gb|AAN72266.1| At4g18060/F15J5_30 [Arabidopsis thaliana] gi|332658589|gb|AEE83989.1| SH3 domain-containing protein [Arabidopsis thaliana]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/371 (75%), Positives = 313/371 (84%), Gaps = 20/371 (5%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++ RRQASKL++QVAKQQ                     AVIKQFS +GYE SDVMVID
Sbjct: 1   MDAFRRQASKLRDQVAKQQL--------------------AVIKQFSGTGYESSDVMVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           E+EMQRH QL+KLYRSTR  K+FQRD+VK AE FT IG +HIEAGTKLSEDCCRYG EN+
Sbjct: 41  ELEMQRHHQLDKLYRSTRSAKEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNENS 100

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
           QNI+ENIL KAAAIYGDARKHV+KEQEDFN+LL+SQVLDPLRAM+ G+PLEDARHLAQRY
Sbjct: 101 QNIDENILAKAAAIYGDARKHVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRY 160

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMRQEAET A EVS+RQ RVREAP PENVAKL  AEA+MQELKANMA+LGKEA AALAA
Sbjct: 161 SRMRQEAETHATEVSRRQARVREAPIPENVAKLQLAEAKMQELKANMAVLGKEATAALAA 220

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQK 300
           +E+QQHRLTFQRLVAMVEGEKNYHLRIAAIL D+EAEMV+EKQ KESAPP IP+EN S+K
Sbjct: 221 VESQQHRLTFQRLVAMVEGEKNYHLRIAAILSDIEAEMVTEKQHKESAPPAIPTENGSEK 280

Query: 301 AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
             YFLAE IHPF+AASEKEL L  GDY+VVRKVS +GW+EGECKGKAGWFP A +EKRQR
Sbjct: 281 TSYFLAEVIHPFSAASEKELDLDKGDYIVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQR 340

Query: 361 IPVSNVADEAY 371
           +P +N A E Y
Sbjct: 341 LPTTNFAAEVY 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800258|ref|XP_002868013.1| AT4g18060/F15J5_30 [Arabidopsis lyrata subsp. lyrata] gi|297313849|gb|EFH44272.1| AT4g18060/F15J5_30 [Arabidopsis lyrata subsp. lyrata]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/371 (75%), Positives = 313/371 (84%), Gaps = 20/371 (5%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++ RRQASKL++QVAKQQ                     AVIKQFS +GYE SDVMVID
Sbjct: 1   MDAFRRQASKLRDQVAKQQL--------------------AVIKQFSGTGYESSDVMVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           E+EMQRH QL+KLYRSTR  K+FQRD+VK AE FT+IG +HIEAGTKLSEDCCRYG EN+
Sbjct: 41  ELEMQRHHQLDKLYRSTRSAKEFQRDIVKAAEAFTSIGLRHIEAGTKLSEDCCRYGNENS 100

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
           QNI+ENIL KAAAIYGDARKHV+KEQEDFN+LL+SQVLDPLRAM+ G+PLEDARHLAQRY
Sbjct: 101 QNIDENILAKAAAIYGDARKHVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRY 160

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMRQEAET A EVS+RQ RVREAP PENVAKL  AEA+MQELKANMA+LGKEA AALAA
Sbjct: 161 SRMRQEAETHATEVSRRQARVREAPIPENVAKLQLAEAKMQELKANMAVLGKEATAALAA 220

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQK 300
           +E+QQHRLTFQRLVAMVEGEKNYHLRIAAIL D+EAEMV+EKQ KESAPP IP+EN S+K
Sbjct: 221 VESQQHRLTFQRLVAMVEGEKNYHLRIAAILSDIEAEMVTEKQHKESAPPAIPTENGSEK 280

Query: 301 AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
             YFLAE IH F+AASEKEL L  GDYVVVRKVS +GW+EGECKGKAGWFP A +EKRQR
Sbjct: 281 TSYFLAEVIHAFSAASEKELELEKGDYVVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQR 340

Query: 361 IPVSNVADEAY 371
           +P +N A E Y
Sbjct: 341 LPTNNFAAEVY 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16974680|gb|AAL32440.1|AF367775_1 SH3 domain-containing protein 3 [Arabidopsis thaliana]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/371 (74%), Positives = 309/371 (83%), Gaps = 20/371 (5%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++ RRQASKL++QVAKQQ                     AVIKQFS +GYE SDVMVID
Sbjct: 1   MDAFRRQASKLRDQVAKQQL--------------------AVIKQFSGTGYESSDVMVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           E+EMQRH QL+KLYRSTR  K+FQRD+VK AE FT IG +HIEAGTKLSEDCCRYG E  
Sbjct: 41  ELEMQRHHQLDKLYRSTRSAKEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNEIV 100

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
           +NI+ENIL KAAAIYGDARKHV+KEQEDFN+LL+SQVLDPLRAM+ G+PLEDARHLAQRY
Sbjct: 101 RNIDENILAKAAAIYGDARKHVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRY 160

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMRQEAET A EVS+RQ RVREAP PENVAKL  AEA+MQELKANMA+LGKEA AALAA
Sbjct: 161 SRMRQEAETHATEVSRRQARVREAPIPENVAKLQLAEAKMQELKANMAVLGKEATAALAA 220

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQK 300
           +E+QQHRLTFQRLVAMVEGEKNYHLRIAAIL D+EAEMV+EKQ KESA P IP+EN S+K
Sbjct: 221 VESQQHRLTFQRLVAMVEGEKNYHLRIAAILSDIEAEMVTEKQHKESALPAIPTENGSEK 280

Query: 301 AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
             YFLAE IHPF+A SEKEL L  GDY+VVRKVS +GW+EGECKGKAGWFP A +EKRQR
Sbjct: 281 TSYFLAEVIHPFSAVSEKELDLDKGDYIVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQR 340

Query: 361 IPVSNVADEAY 371
           +P +N A E Y
Sbjct: 341 LPTTNFAAEVY 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557451|ref|XP_002519756.1| vav3, putative [Ricinus communis] gi|223541173|gb|EEF42729.1| vav3, putative [Ricinus communis]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/371 (77%), Positives = 311/371 (83%), Gaps = 24/371 (6%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++LR+QA KL+EQVAKQQQ                    AVIKQFS +GYE SDVMVID
Sbjct: 1   MDALRKQAFKLREQVAKQQQ--------------------AVIKQFSGTGYESSDVMVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           EVEMQRHQQLEKLYRSTR  KDFQ+D+VK AE FTAIGYKHIEAGTKLSEDCCRYG EN 
Sbjct: 41  EVEMQRHQQLEKLYRSTRAGKDFQKDIVKAAETFTAIGYKHIEAGTKLSEDCCRYGTEN- 99

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
              N+NIL K A IYG+ARKHVEKEQED  RLLSSQVLDPLR MI GAPLEDARHLAQRY
Sbjct: 100 --ANDNILSKGAGIYGEARKHVEKEQEDLIRLLSSQVLDPLRTMINGAPLEDARHLAQRY 157

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMRQEAETQA EVS+RQ RV+E P PENVAKLHAAEA+MQELKANMA+LGKEAAAALAA
Sbjct: 158 SRMRQEAETQAAEVSRRQVRVKETPIPENVAKLHAAEAKMQELKANMAVLGKEAAAALAA 217

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQK 300
           +EAQQ RL+FQRLVAMVE EKNYHLRIAAI  +VEAEMVSEKQRKESAPPVIPSEN S+K
Sbjct: 218 VEAQQQRLSFQRLVAMVEAEKNYHLRIAAIFSEVEAEMVSEKQRKESAPPVIPSENGSEK 277

Query: 301 AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
            +YFLAE  HPF A +EKELSL VGDYVVVRKVSP+GWSEGECKG+AGWFPSA VEKRQR
Sbjct: 278 -MYFLAEVTHPFIAETEKELSLAVGDYVVVRKVSPNGWSEGECKGRAGWFPSAYVEKRQR 336

Query: 361 IPVSNVADEAY 371
           IP S+   + Y
Sbjct: 337 IPTSDATTQVY 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116716|ref|XP_002331860.1| predicted protein [Populus trichocarpa] gi|222875378|gb|EEF12509.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 290/372 (77%), Positives = 318/372 (85%), Gaps = 28/372 (7%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++LR+QASKL+EQVAKQQQ                    AVIKQFS +GYE SDVMVID
Sbjct: 1   MDALRKQASKLREQVAKQQQ--------------------AVIKQFSGTGYESSDVMVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           EVEM RHQQLEKLYRSTR  KDFQ+D+VK AE FT IGY+HIEAGTKLSEDCCRYG EN 
Sbjct: 41  EVEMHRHQQLEKLYRSTRSGKDFQKDVVKAAEAFTTIGYRHIEAGTKLSEDCCRYGTEN- 99

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
             INEN+L KAAAIYGDARKHVE+EQ+D NRLLSSQVL+PLRAMI G PLEDARHLAQRY
Sbjct: 100 --INENMLAKAAAIYGDARKHVEQEQDDLNRLLSSQVLEPLRAMINGGPLEDARHLAQRY 157

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMRQEAETQAVEVS+RQ RVRE+P PENV+KLHAAEA+MQE+KANMA+LGKEAAAALAA
Sbjct: 158 SRMRQEAETQAVEVSRRQARVRESPIPENVSKLHAAEAKMQEIKANMAVLGKEAAAALAA 217

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESA-----PPVIPSE 295
           +EAQQHRLTFQRLVAMVEGEKNYHLRIAAIL +VEAEMVSEKQ+KESA     PPVIPSE
Sbjct: 218 VEAQQHRLTFQRLVAMVEGEKNYHLRIAAILSEVEAEMVSEKQQKESAPPVILPPVIPSE 277

Query: 296 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           N  +K+ YFLAEA HPF A +EKELSL VGDY+VVRKVSP+GWSEGEC+GKAGWFPSA V
Sbjct: 278 NGMEKSTYFLAEATHPFFAETEKELSLAVGDYIVVRKVSPTGWSEGECRGKAGWFPSAYV 337

Query: 356 EKRQRIPVSNVA 367
           EKRQRIP S+ A
Sbjct: 338 EKRQRIPTSSSA 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500573|ref|XP_004161135.1| PREDICTED: uncharacterized LOC101214418 [Cucumis sativus]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/371 (74%), Positives = 307/371 (82%), Gaps = 23/371 (6%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++LR+QASKLK QVAKQQQ                    AVIKQF  SGYE SDVMVID
Sbjct: 1   MDALRKQASKLKVQVAKQQQ--------------------AVIKQFGGSGYESSDVMVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           EVEMQRHQQLEK YRSTR  +DFQ+D+VK  E F AIGY+HIE G KLSEDCC YGA   
Sbjct: 41  EVEMQRHQQLEKFYRSTRAGRDFQKDIVKAGEAFIAIGYRHIETGNKLSEDCCNYGA--- 97

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
            NINENIL KA++IYGDARKHVEKEQED  +L SSQ+LDPLRAMITG PLEDARHLAQRY
Sbjct: 98  NNINENILAKASSIYGDARKHVEKEQEDLIKLFSSQILDPLRAMITGPPLEDARHLAQRY 157

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMRQEAET A E+S+R+ RVRE  NPENVAKLHA+EA+MQELKANMA+LGKEA+AALAA
Sbjct: 158 SRMRQEAETLAGEISRRRARVREFSNPENVAKLHASEAKMQELKANMAVLGKEASAALAA 217

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQK 300
           ++AQQ RLT QRLVAMVEGEK YHLR+AAILG+VEAEMV+EKQRKESAPPVI SEN S K
Sbjct: 218 VDAQQQRLTLQRLVAMVEGEKTYHLRVAAILGEVEAEMVTEKQRKESAPPVISSENHSGK 277

Query: 301 AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
           + +FLAEA+HPF AASEKELSL VGDYVVVRKVSPSGWSEGECKGK GWFPS+ VEKRQR
Sbjct: 278 SSFFLAEAVHPFNAASEKELSLSVGDYVVVRKVSPSGWSEGECKGKGGWFPSSYVEKRQR 337

Query: 361 IPVSNVADEAY 371
           IP  N   E++
Sbjct: 338 IPTMNTVSESF 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114387|ref|XP_002316744.1| predicted protein [Populus trichocarpa] gi|222859809|gb|EEE97356.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/376 (75%), Positives = 316/376 (84%), Gaps = 29/376 (7%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++LR+QASKL+EQVAKQQQ                    AVIKQFS++GYE SDVMVID
Sbjct: 1   MDALRKQASKLREQVAKQQQ--------------------AVIKQFSSTGYESSDVMVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           EVEM RHQQLEK+Y  TR  KDFQ+D++K AE FTAIGYKH+EAGTKLSEDCCRYG EN 
Sbjct: 41  EVEMHRHQQLEKMYSLTRAGKDFQKDILKAAESFTAIGYKHVEAGTKLSEDCCRYGTEN- 99

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
             INENIL KAAAIYGDA KHVE+EQED NRLL SQ+LDPLRAMIT +PLEDARHLAQRY
Sbjct: 100 --INENILAKAAAIYGDAHKHVEQEQEDLNRLLFSQILDPLRAMITDSPLEDARHLAQRY 157

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMRQEAETQA E+S+RQ RVRE+P PEN+A+LHAAEA+MQE+KANMA+LGKEAAAALAA
Sbjct: 158 SRMRQEAETQAAELSRRQARVRESPIPENIARLHAAEAKMQEIKANMAVLGKEAAAALAA 217

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAP-----PVIPSE 295
           +EAQQHRLTFQRLVAMVEGEKNYHLRIAAIL +VEAEMVSEKQ+KESAP     PVIPSE
Sbjct: 218 VEAQQHRLTFQRLVAMVEGEKNYHLRIAAILSEVEAEMVSEKQQKESAPPVILLPVIPSE 277

Query: 296 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           N S+K  YFLAEA H F A +EKELSL VGD +VVRKVSP+GWSEGECKGKAGWFPSA V
Sbjct: 278 NGSEKTTYFLAEATHLFIAETEKELSLAVGDCIVVRKVSPTGWSEGECKGKAGWFPSAYV 337

Query: 356 EKRQRIPVSNVADEAY 371
           EKRQR+  S +A +AY
Sbjct: 338 EKRQRMSTS-LAAQAY 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463364|ref|XP_002272365.1| PREDICTED: uncharacterized protein LOC100258967 [Vitis vinifera] gi|297740624|emb|CBI30806.3| unnamed protein product [Vitis vinifera]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/371 (74%), Positives = 310/371 (83%), Gaps = 23/371 (6%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++LR+QASK +EQVAKQQQ                    AVIKQF  +GYE SDVMVID
Sbjct: 1   MDALRKQASKFREQVAKQQQ--------------------AVIKQFGGTGYESSDVMVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           EVEMQRHQQLEKLYRSTR  KDFQ+D+V+  E FTAIGYK IE GTKLSEDCCRYGAEN 
Sbjct: 41  EVEMQRHQQLEKLYRSTRAGKDFQKDIVRAGEAFTAIGYKQIETGTKLSEDCCRYGAEN- 99

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
             IN+NIL +AA+IYGD  KH+ KEQED N+LLSSQ+LDPLRAM+TGAPLEDARHLAQRY
Sbjct: 100 --INDNILARAASIYGDGLKHIAKEQEDLNKLLSSQILDPLRAMVTGAPLEDARHLAQRY 157

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMR EAETQA EVS+RQ R+REAPNPEN A+L+ AEA+M+ELKANMA+LGKEAAAALAA
Sbjct: 158 SRMRHEAETQAAEVSRRQARLREAPNPENAARLNIAEAKMKELKANMAVLGKEAAAALAA 217

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQK 300
           +EAQQ RL+FQRLVAMVEGE+ YH RIA I G+VE+EMVSEKQRKESAPP IPSE+ S+K
Sbjct: 218 VEAQQQRLSFQRLVAMVEGERTYHQRIATIFGEVESEMVSEKQRKESAPPAIPSESHSEK 277

Query: 301 AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
            +YFLAEA+H F+AASEKELSL VGDYVVVRKVS +GWSEGECKGKAGWFPS  V KRQR
Sbjct: 278 TMYFLAEAMHAFSAASEKELSLNVGDYVVVRKVSHTGWSEGECKGKAGWFPSEYVAKRQR 337

Query: 361 IPVSNVADEAY 371
           +P SNVA E Y
Sbjct: 338 LPTSNVAAEVY 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148270940|gb|ABQ53638.1| Src homology-3 domain protein 3 [Cucumis melo]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/371 (74%), Positives = 307/371 (82%), Gaps = 23/371 (6%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++LR+QASKLK QVAKQQQ                    AVIKQF  SGYE SDVMVID
Sbjct: 1   MDALRKQASKLKVQVAKQQQ--------------------AVIKQFGGSGYESSDVMVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           EVEMQRHQQLEK Y+STR  +DFQ+D+VK  E F AIGY+HIE G KLSEDCC YGA   
Sbjct: 41  EVEMQRHQQLEKFYKSTRAGRDFQKDIVKAGEAFIAIGYRHIETGNKLSEDCCNYGA--- 97

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
            NINENIL KA++IYGDA KHVEKEQED  +LLSSQ+LDPLRAMITG PLEDARHLAQRY
Sbjct: 98  NNINENILAKASSIYGDACKHVEKEQEDLIKLLSSQILDPLRAMITGPPLEDARHLAQRY 157

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMRQEAE+ A E+S+R+ RVRE  NPENVAKLHA+EA+MQELKANMA+LGKEA+AALAA
Sbjct: 158 SRMRQEAESLAAEISRRRARVREFSNPENVAKLHASEAKMQELKANMAVLGKEASAALAA 217

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQK 300
           ++AQQ RLT QRLVAMVEGEK YHLR+AAILG+VEAEMV+EKQRKESAPPVI SEN   K
Sbjct: 218 VDAQQQRLTLQRLVAMVEGEKTYHLRVAAILGEVEAEMVTEKQRKESAPPVISSENHPGK 277

Query: 301 AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
           + +FLAEA+HPF AASEKELSL VGDYVVVRKVSP+GWSEGECKGKAGWFPS+ VEKRQR
Sbjct: 278 SSFFLAEAVHPFNAASEKELSLSVGDYVVVRKVSPTGWSEGECKGKAGWFPSSYVEKRQR 337

Query: 361 IPVSNVADEAY 371
           IP  N   E++
Sbjct: 338 IPTMNTVPESF 348

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525323|ref|XP_003531274.1| PREDICTED: uncharacterized protein LOC100820088 [Glycine max]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 277/371 (74%), Positives = 311/371 (83%), Gaps = 23/371 (6%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           M++LR+QASKL+EQVAKQQQ                    AVIKQFS+SGYE SDV+VID
Sbjct: 1   MDALRKQASKLREQVAKQQQ--------------------AVIKQFSSSGYESSDVVVID 40

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN 120
           EVEMQRH QLEKLYR+TR  KDFQ+++VK AE FTAIGYKHIE GTKLSEDCC+YGAENN
Sbjct: 41  EVEMQRHHQLEKLYRATRSGKDFQKEIVKAAETFTAIGYKHIETGTKLSEDCCKYGAENN 100

Query: 121 QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRY 180
              ++NIL KAA++YGDARKHVEKE E+ NRLLS+QVLDPLR MI G PLEDARHLAQRY
Sbjct: 101 ---SDNILAKAASVYGDARKHVEKEHEELNRLLSTQVLDPLRQMINGVPLEDARHLAQRY 157

Query: 181 SRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 240
           SRMRQEAE Q  E+ +RQ RVREAP  E VAKLHAAEA+MQELKANMA+LGKEAAAALAA
Sbjct: 158 SRMRQEAEAQREEIVRRQARVREAPTAEQVAKLHAAEAKMQELKANMAVLGKEAAAALAA 217

Query: 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQK 300
           +EAQQ RLTFQRLVAMVEGEK +HLR+AAILG++EAEMVS++Q+KESAPPV  SEN S+K
Sbjct: 218 VEAQQQRLTFQRLVAMVEGEKTFHLRVAAILGEIEAEMVSDRQKKESAPPVGISENGSEK 277

Query: 301 AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
            +YFLAEA HPF+A SEKELS   GD+VVVRKVSPSGWSEGEC GKAGWFPSA VEKRQR
Sbjct: 278 TMYFLAEATHPFSAESEKELSFSKGDFVVVRKVSPSGWSEGECNGKAGWFPSAYVEKRQR 337

Query: 361 IPVSNVADEAY 371
           IP SN+A E Y
Sbjct: 338 IPSSNMAGEVY 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2117666	351	AT4G18060 "AT4G18060" [Arabido	0.892	0.943	0.767	2.4e-140
TAIR|locus:2206174	439	AT1G31440 [Arabidopsis thalian	0.671	0.567	0.396	1.8e-64
TAIR|locus:2139554	368	AT4G34660 "AT4G34660" [Arabido	0.681	0.687	0.496	2.7e-59
TAIR|locus:2120257	169	AT4G39020 "AT4G39020" [Arabido	0.253	0.556	0.448	9.4e-15
UNIPROTKB|I3L6D4	116	I3L6D4 "Uncharacterized protei	0.293	0.939	0.327	1.4e-06
UNIPROTKB|B1ANY6	66	ARHGEF7 "Rho guanine nucleotid	0.164	0.924	0.375	1.7e-05
UNIPROTKB|C9JDI6	61	ARHGEF7 "Rho guanine nucleotid	0.150	0.918	0.389	2.1e-05
UNIPROTKB|A8DCP3	914	ITSN1 "Intersectin 1 short for	0.584	0.237	0.221	2.3e-05
UNIPROTKB|A7Y322	1015	ITSN1 "Intersectin-1" [Homo sa	0.584	0.213	0.221	2.6e-05
UNIPROTKB|E7ERJ1	1020	ITSN1 "Intersectin-1" [Homo sa	0.584	0.212	0.221	2.6e-05

TAIR|locus:2117666 AT4G18060 "AT4G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1322 (470.4 bits), Expect = 2.4e-140, Sum P(2) = 2.4e-140
 Identities = 254/331 (76%), Positives = 280/331 (84%)

Query:    41 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYK 100
             AVIKQFS +GYE SDVMVIDE+EMQRH QL+KLYRSTR  K+FQRD+VK AE FT IG +
Sbjct:    21 AVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSAKEFQRDIVKAAEAFTTIGLR 80

Query:   101 HIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDP 160
             HIEAGTKLSEDCCRYG EN+QNI+ENIL KAAAIYGDARKHV+KEQEDFN+LL+SQVLDP
Sbjct:    81 HIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARKHVDKEQEDFNKLLASQVLDP 140

Query:   161 LRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARM 220
             LRAM+ G+PLEDARHLAQRYSRMRQEAET A EVS+RQ RVREAP PENVAKL  AEA+M
Sbjct:   141 LRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQARVREAPIPENVAKLQLAEAKM 200

Query:   221 QELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS 280
             QELKANM                QQHRLTFQRLVAMVEGEKNYHLRIAAIL D+EAEMV+
Sbjct:   201 QELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEGEKNYHLRIAAILSDIEAEMVT 260

Query:   281 EKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSE 340
             EKQ KESAPP IP+EN S+K  YFLAE IHPF+AASEKEL L  GDY+VVRKVS +GW+E
Sbjct:   261 EKQHKESAPPAIPTENGSEKTSYFLAEVIHPFSAASEKELDLDKGDYIVVRKVSQTGWAE 320

Query:   341 GECKGKAGWFPSANVEKRQRIPVSNVADEAY 371
             GECKGKAGWFP A +EKRQR+P +N A E Y
Sbjct:   321 GECKGKAGWFPMAYIEKRQRLPTTNFAAEVY 351

GO:0030276 "clathrin binding" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2206174 AT1G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
 Identities = 101/255 (39%), Positives = 150/255 (58%)

Query:    40 QAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGY 99
             QAV+K     G+  +D +V+DE E+  HQ+L+ LY ST+  K  QR++V+  E F A G 
Sbjct:    20 QAVLKHL---GHVNADAVVVDEEELHCHQKLQDLYSSTKAAKRLQRNIVRGLEGFIATGT 76

Query:   100 KHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLD 159
             K +E G K +ED  +YG EN  + N   L + A  +G + K VE E+E    +LS QV +
Sbjct:    77 KVVEIGLKFAEDFKKYGDEN-PDANTP-LSRVAHHFGTSYKSVEGERETLLGVLSEQVCE 134

Query:   160 PLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEA 218
             P+R MI  APLEDARHL   Y R+RQE E QA +V +R+ +++E+  + E   KL  +E+
Sbjct:   135 PIRTMIYSAPLEDARHLVNHYDRLRQEVEAQATDVLRRRSKLKESDISEEAYIKLKNSES 194

Query:   219 RMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 278
             R+ ELK++M                QQ  +T QRL A+VE E++YH     IL  + +EM
Sbjct:   195 RLAELKSSMKTLGKEATKAMLEVDDQQQNVTSQRLRALVEAERSYHRNALDILDKLHSEM 254

Query:   279 VSEKQRKESAPPVIP 293
             ++E++   S+P  +P
Sbjct:   255 IAEEEAIGSSPKSLP 269

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0012505 "endomembrane system" evidence=IDA

GO:0030276 "clathrin binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2139554 AT4G34660 "AT4G34660" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 129/260 (49%), Positives = 169/260 (65%)

Query:    40 QAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGY 99
             QAV KQF   GY      + DE E+ +HQ+LEKLY STR  K +QRD+V+  E +   G 
Sbjct:    20 QAVFKQFGGGGYGSG---LADEAELNQHQKLEKLYISTRAAKHYQRDIVRGVEGYIVTGS 76

Query:   100 KHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLD 159
             K +E GTKLSED  +YG+EN    N N+L +AA  YG AR  +EKE+ +  + L +QV +
Sbjct:    77 KQVEIGTKLSEDSRKYGSENTCT-NGNVLTRAALNYGRARAQMEKERGNMLKALGTQVAE 135

Query:   160 PLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEA 218
             PLRAM+ GAPLEDARHLAQRY RMRQEAE QA EV++RQ + RE+  NP+ + KL +AEA
Sbjct:   136 PLRAMVLGAPLEDARHLAQRYDRMRQEAEAQATEVARRQAKARESQGNPDILMKLESAEA 195

Query:   219 RMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 278
             ++ +LK+NM                QQ +LT +RL++MVE E+ YH R+  IL  +E EM
Sbjct:   196 KLHDLKSNMTILGKEAASALASVEDQQQKLTLERLLSMVESERAYHQRVLQILDQLEGEM 255

Query:   279 VSEKQRKESAPPVIPSENSS 298
             VSE+QR E+  P  PS   S
Sbjct:   256 VSERQRIEA--PSTPSSADS 273

GO:0008150 "biological_process" evidence=ND

GO:0030276 "clathrin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2120257 AT4G39020 "AT4G39020" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 9.4e-15, P = 9.4e-15
 Identities = 44/98 (44%), Positives = 61/98 (62%)

Query:   274 VEAEMVSEKQRKESAPPVIPSE--NSSQKAV-YFLAEAIHPFTAASEKELSLGVGDYVVV 330
             +E +  SE  R E+   V  S+  N +  A+ YFL E + P+ A S+ ELSL VGDYVV+
Sbjct:    71 MEEDAYSEWLR-EANDGVNASQMHNGTSDAMGYFLGEVMFPYQADSDFELSLSVGDYVVI 129

Query:   331 RKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVAD 368
             R+V  S W+EGECKG AGWF    +E+R R+  + V +
Sbjct:   130 REVVSSVWAEGECKGNAGWFTYIYIERRDRVFATKVIE 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3L6D4 I3L6D4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 37/113 (32%), Positives = 54/113 (47%)

Query:   248 LTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENS--SQKAVYFL 305
             LT   L  +VE  K++ L+      D   +   ++    +      + N   S K V  +
Sbjct:     3 LTLSSLKELVEYYKHHSLKEGFRTLDTTLQFPYKEPEHSAGQRANRAGNRLLSPK-VLGI 61

Query:   306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 357
             A A + F A   +ELSL  GD V +  K+S +GW  GE  G+ GWFPS  VE+
Sbjct:    62 AVARYDFCARDMRELSLLKGDMVKIYTKMSANGWWRGEVNGRVGWFPSTYVEE 114

GO:0030676 "Rac guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|B1ANY6 ARHGEF7 "Rho guanine nucleotide exchange factor 7" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query:   294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
             ++NS+ + V     A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS 
Sbjct:     2 TDNSNNQLV---VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSN 58

Query:   354 NVEK 357
              V +
Sbjct:    59 YVRE 62

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

UNIPROTKB|C9JDI6 ARHGEF7 "Rho guanine nucleotide exchange factor 7" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query:   294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 352
             ++NS+ + V     A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS
Sbjct:     2 TDNSNNQLV---VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPS 57

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

UNIPROTKB|A8DCP3 ITSN1 "Intersectin 1 short form variant 14" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 53/239 (22%), Positives = 103/239 (43%)

Query:   138 ARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA-ETQAVEVSK 196
             AR+H+  + ++  +   S++ +     I    L++ R +  +    +Q++ E + ++  +
Sbjct:   578 ARQHLRDQLDEVEKETRSKLQE---IDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKE 634

Query:   197 RQQRVREAPNPENVAKLHAAEARMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAM 256
             +++++ E    +  A+  A E   Q L+                   ++ +L  +  V  
Sbjct:   635 QERKIIELEKQKEEAQRRAQERDKQWLE----HVQQEDEHQRPRKLHEEEKLKREESVKK 690

Query:   257 VEGEKNYHLRIAAILGDVEAEMVSEKQRKESAP-------PVIPSENSSQKAVYFLAEAI 309
              +GE+         LG +  +     +    AP       P+  S   + K VY+   A+
Sbjct:   691 KDGEEKGKQEAQDKLGRLFHQHQEPAKPAVQAPWSTAEKGPLTISAQENVKVVYY--RAL 748

Query:   310 HPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNV 366
             +PF + S  E+++  GD V+V   +    GW  GE KGK GWFP+   EK   IP + V
Sbjct:   749 YPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK---IPENEV 804

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

UNIPROTKB|A7Y322 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 53/239 (22%), Positives = 103/239 (43%)

Query:   138 ARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA-ETQAVEVSK 196
             AR+H+  + ++  +   S++ +     I    L++ R +  +    +Q++ E + ++  +
Sbjct:   578 ARQHLRDQLDEVEKETRSKLQE---IDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKE 634

Query:   197 RQQRVREAPNPENVAKLHAAEARMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAM 256
             +++++ E    +  A+  A E   Q L+                   ++ +L  +  V  
Sbjct:   635 QERKIIELEKQKEEAQRRAQERDKQWLE----HVQQEDEHQRPRKLHEEEKLKREESVKK 690

Query:   257 VEGEKNYHLRIAAILGDVEAEMVSEKQRKESAP-------PVIPSENSSQKAVYFLAEAI 309
              +GE+         LG +  +     +    AP       P+  S   + K VY+   A+
Sbjct:   691 KDGEEKGKQEAQDKLGRLFHQHQEPAKPAVQAPWSTAEKGPLTISAQENVKVVYY--RAL 748

Query:   310 HPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNV 366
             +PF + S  E+++  GD V+V   +    GW  GE KGK GWFP+   EK   IP + V
Sbjct:   749 YPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK---IPENEV 804

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

UNIPROTKB|E7ERJ1 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 53/239 (22%), Positives = 103/239 (43%)

Query:   138 ARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA-ETQAVEVSK 196
             AR+H+  + ++  +   S++ +     I    L++ R +  +    +Q++ E + ++  +
Sbjct:   578 ARQHLRDQLDEVEKETRSKLQE---IDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKE 634

Query:   197 RQQRVREAPNPENVAKLHAAEARMQELKANMXXXXXXXXXXXXXXXXQQHRLTFQRLVAM 256
             +++++ E    +  A+  A E   Q L+                   ++ +L  +  V  
Sbjct:   635 QERKIIELEKQKEEAQRRAQERDKQWLE----HVQQEDEHQRPRKLHEEEKLKREESVKK 690

Query:   257 VEGEKNYHLRIAAILGDVEAEMVSEKQRKESAP-------PVIPSENSSQKAVYFLAEAI 309
              +GE+         LG +  +     +    AP       P+  S   + K VY+   A+
Sbjct:   691 KDGEEKGKQEAQDKLGRLFHQHQEPAKPAVQAPWSTAEKGPLTISAQENVKVVYY--RAL 748

Query:   310 HPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNV 366
             +PF + S  E+++  GD V+V   +    GW  GE KGK GWFP+   EK   IP + V
Sbjct:   749 YPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK---IPENEV 804

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G18060	clathrin binding; clathrin binding; FUNCTIONS IN- clathrin binding; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Neutrophil cytosol factor 2 (InterPro-IPR000108), Src homology-3 domain (InterPro-IPR001452); BEST Arabidopsis thaliana protein match is- SH3 domain-containing protein 2 (SH3P2) (TAIR-AT4G34660.1); Has 2031 Blast hits to 1692 proteins in 137 species- Archae - 0; Bacteria - 6; Metazoa - 1668; Fungi - 93; Plants - 91; Viruses - 0; Other Eukaryotes - 173 (source- NCBI BLink). (351 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ADL6	ADL6 (DYNAMIN-LIKE PROTEIN 6); GTPase; involved in trafficking from the trans-Golgi Network to [...] (914 aa)					•				0.869

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
cd07607	209	cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (	8e-79
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	1e-19
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-13
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	5e-11
smart00326	56	smart00326, SH3, Src homology 3 domains	1e-10
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	1e-10
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	2e-09
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	8e-09
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	1e-08
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	3e-08
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	5e-08
pfam00018	47	pfam00018, SH3_1, SH3 domain	5e-08
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	6e-08
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	7e-08
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	8e-08
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	9e-08
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	9e-08
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	1e-07
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	2e-07
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	2e-07
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	3e-07
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	4e-07
cd11982	52	cd11982, SH3_Shank1, Src homology 3 domain of SH3	4e-07
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	7e-07
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	7e-07
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	9e-07
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	1e-06
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	1e-06
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	2e-06
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-06
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	4e-06
cd11759	57	cd11759, SH3_CRK_C, C-terminal Src Homology 3 doma	4e-06
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	5e-06
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	5e-06
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	5e-06
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	5e-06
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	6e-06
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	8e-06
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	8e-06
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	1e-05
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	1e-05
cd11994	59	cd11994, SH3_Intersectin2_4, Fourth Src homology 3	2e-05
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	2e-05
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	3e-05
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	3e-05
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	3e-05
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	4e-05
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	4e-05
cd11795	54	cd11795, SH3_DNMBP_N2, Second N-terminal Src homol	6e-05
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	7e-05
cd11850	56	cd11850, SH3_Abl, Src homology 3 domain of the Pro	8e-05
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	9e-05
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	1e-04
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	1e-04
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	1e-04
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	1e-04
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	1e-04
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	2e-04
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	2e-04
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	2e-04
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	2e-04
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	2e-04
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	2e-04
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	2e-04
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	3e-04
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	3e-04
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	3e-04
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	3e-04
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	3e-04
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	4e-04
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	4e-04
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	4e-04
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	6e-04
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	6e-04
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	7e-04
cd11983	52	cd11983, SH3_Shank2, Src homology 3 domain of SH3	8e-04
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	8e-04
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	0.001
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	0.001
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	0.001
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	0.001
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	0.001
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	0.002
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	0.002
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	0.003
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	0.003
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	0.003
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	0.003
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	0.004
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	0.004
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	0.004
cd12017	53	cd12017, SH3_Tks_3, Third Src homology 3 domain of	0.004

>gnl|CDD|153291 cd07607, BAR_SH3P_plant, The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

 Score =  240 bits (614), Expect = 8e-79
 Identities = 113/211 (53%), Positives = 155/211 (73%), Gaps = 3/211 (1%)

Query: 68  QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENI 127
           Q+LE+LY STR  K FQRD+V+  E F + G K +E GTKL+EDC +YG+EN  ++N   
Sbjct: 1   QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSEN-PSVNTA- 58

Query: 128 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA 187
           L +A+  YG AR  +EKE+E+ +R+LS QV +PLRAM+ GAPLEDARHL QRY R+RQE 
Sbjct: 59  LSRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEV 118

Query: 188 ETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQH 246
           E QA EV++R+ + +E+  NP+N AKL +AE+++ ELK++M  LGKEA +A+ A+E QQ 
Sbjct: 119 EAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEATSAMLAVEDQQQ 178

Query: 247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 277
           ++T QRL+AMVE E+ YH R A IL  +  E
Sbjct: 179 QVTLQRLLAMVEAERAYHQRAADILDKLHDE 209

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 209

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 81.2 bits (201), Expect = 1e-19
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 5/58 (8%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK-----AGWFPSANVEK 357
           +A+ I PFTA +E +LSL VG  V+VRK SPSGW EGE + +      GWFP+  V+ 
Sbjct: 1   IAQVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVKL 58

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 23/52 (44%), Positives = 27/52 (51%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           L  A   F   +E ELS   GD + V +V   GW EG   GK GWFPS  V+
Sbjct: 1   LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 357
           A++ F A +  E+S   GD + V   +V+  GW  GE KGK GWFP+  VEK
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPS 352
               A++ +TA    ELS   GD + V + S  GW +G    GK G FPS
Sbjct: 3   PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPS 52

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 55.9 bits (136), Expect = 1e-10
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSA 353
           A A++ + A  + ELS   GD + V +    GW EGE   G+ G FP+ 
Sbjct: 2   ARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPAN 50

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVE 356
            + +H +TA    EL+L  GD V V +  P GW EGE    G+ GWFPS+  E
Sbjct: 2   VQCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 51.2 bits (122), Expect = 8e-09
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           +A A + F A   +ELSL  GD V +  K+S +GW  GE  G+ GWFPS  VE+
Sbjct: 2   IAIARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVEE 55

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 23/46 (50%), Positives = 28/46 (60%)

Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           + A  E ELSL  GD V+V + S  GW  GEC G+ GWFPS  V +
Sbjct: 8   YEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A A++PF A S KELSL  GD + +R+     W EGE  G+ G FP++ VE
Sbjct: 2   ARALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVR-KVSP-SGWSEGECKGKAGWFPSANVE 356
           A  +  + A +E EL+L  GD V +  K     GW +GE  GK G FP   VE
Sbjct: 2   ARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPS 352
           A++ +TA    ELS   GD ++V + S  GW +G  K GK G  PS
Sbjct: 2   ALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 48.5 bits (115), Expect = 6e-08
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVR--KVSPSGWSEGECKGKAGWFPSANVEK 357
           A++PF A S  E+++  GD V+V   +    GW  GE KGK GWFP+   EK
Sbjct: 4   ALYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK 55

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           + A    ELSL  GD V V     +GW EGE  G+ G  PS+ VE+
Sbjct: 8   YVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           +A++ +TA  E ELSL  GD + V +    GW  GE  GK G FP+  VE
Sbjct: 3   KALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 48.2 bits (115), Expect = 9e-08
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A++ + A    ELS   GD + + K  PSGW  G  +GK G FP   VEK
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 47.9 bits (114), Expect = 9e-08
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 357
           A++PF A +  E+S   GD + V  + V   GW  G  +G  GWFP   VEK
Sbjct: 6   ALYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A+A + F A   +ELSL  GD V +  K    GW  GE  G+ GWFPS  VE+
Sbjct: 2   AKARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVEE 54

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           F   +E ELS+  GD + V +V   GW EG   GK GWFPS  V +
Sbjct: 10  FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVRE 55

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECKGKAGWFPS 352
           EA++ + A  + E+S+ VGD + V +    SGW+ GE  G  G FP+
Sbjct: 3   EALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPT 49

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            AI  + A  + E+SL  G+ V V + + SGW       K GW P++ +E 
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 46.6 bits (110), Expect = 4e-07
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-----GWFPSANVE 356
           +A+ I  +TA   ++L+L  G  +++RK +P GW EGE + +      GWFP+  V+
Sbjct: 5   IAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYVK 61

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212915 cd11982, SH3_Shank1, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 1

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 352
           A+ P+ + +E E+SL  G+ + V  V   G+ EG+ KG+ GWFPS
Sbjct: 5   AVKPYQSQAEGEISLSKGEKIKVLSVGEGGFWEGQVKGRVGWFPS 49

Shank1, also called SSTRIP (Somatostatin receptor-interacting protein), is a brain-specific protein that plays a role in the construction of postsynaptic density (PSD) and the maturation of dendritic spines. Mice deficient in Shank1 show altered PSD composition, thinner PSDs, smaller dendritic spines, and weaker basal synaptic transmission, although synaptic plasticity is normal. They show increased anxiety and impaired fear memory, but also show better spatial learning. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 9/52 (17%)

Query: 308 AIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGE-----CKGKAGWFPS 352
           A++ FT  S+ +LS   GD  YV+ +   PSGW +G       K K GWFPS
Sbjct: 4   ALYDFTPKSKNQLSFKAGDIIYVLNK--DPSGWWDGVIISSSGKVKRGWFPS 53

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 45.4 bits (107), Expect = 7e-07
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 8   FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 53

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           A  +   +A  ++EL L  GD V +  +   GW  GE  G+ G FP   V
Sbjct: 2   ARVLQDLSAQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           A A++ FT  +E++LS   GD ++V +   + WS G   G+ G FP A
Sbjct: 2   AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRA 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A++ +TA  + ELS   GD + V K +  GW EG   G  G FP   VE
Sbjct: 4   ALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A A++ F A + KELS   GD V + +     W EGE  G+ G FP + VEK
Sbjct: 3   ARAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A+A + F A    ELSL  GD + ++ K    GW  GE  G+ GWFP+  VE+
Sbjct: 2   AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVEE 54

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 18/50 (36%), Positives = 22/50 (44%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
               + A    EL+L VGD +   K    GW EG   GK G FP   V+ 
Sbjct: 4   VEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFVKV 53

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212693 cd11759, SH3_CRK_C, C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 20/37 (54%), Positives = 24/37 (64%)

Query: 320 LSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           L+L VGD V V K++ SG  EGE  GK G FP  +VE
Sbjct: 20  LALEVGDLVKVTKINVSGQWEGELNGKVGHFPFTHVE 56

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The C-terminal SH3 domain of CRK has not been shown to bind any target protein; it acts as a negative regulator of CRK function by stabilizing a structure that inhibits the access by target proteins to the N-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 306 AEAIHPFTAAS-EKELSLGVGDYV-VVRKVSP----SGWSEGECK-GKAGWFPSANVE 356
             A++ FT  + E ELSL  GD V V+ K  P    S W +G  + G+ GWFPS  VE
Sbjct: 2   CRALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
            + +  +T  +E EL L VGD + V      GW EG+  GK G FPS  V+
Sbjct: 2   CKVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
              A+  + A+  ++L    GD ++V       W EG+CKGK G FPSA VE
Sbjct: 1   QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A++ + A    ELS   GD + +   S   W +  C GK G  PS  VE
Sbjct: 4   ALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYVE 52

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 352
           A+  ++   E E+SL  GD V V  +   G+ EG  +G+ GWFPS
Sbjct: 4   AVKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFPS 48

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 42.5 bits (100), Expect = 8e-06
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 305 LAEAIHPFTAASEKE-LSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           L   ++ FT    ++ LS   G+ + V +    GW EGE  G  GWFP++ V
Sbjct: 1   LCRTLYAFTGEQHQQGLSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 42.3 bits (99), Expect = 8e-06
 Identities = 20/44 (45%), Positives = 24/44 (54%)

Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           +TA  E ELSL  G  V+V +    GW  G   G+ GWFPS  V
Sbjct: 10  YTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 312 FTAASEKELSLGVGDYV-VVRK-VSPSGWSEGECKGKAGWFPSANVE 356
           +   +  EL+L  GD + V+ K     GW EGE  G+ G+FP   V 
Sbjct: 8   YNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 357
           A A + F A   +ELSL  GD V +  R     GW +GE  G+ GWFPS  VE+
Sbjct: 3   AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 56

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212927 cd11994, SH3_Intersectin2_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-2

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-----KGKAGWFPSANVE 356
           +A+    + A+  ++LSL  G  +++ K + SGW  GE      K + GWFP+++V+
Sbjct: 1   IAQVTTAYVASGVEQLSLSPGQLILILKKNSSGWWLGELQARGKKRQKGWFPASHVK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           AI  +  +S+ E++L  GD V V + S +GW   + K K GW P++ +E
Sbjct: 4   AIADYEKSSKSEMALKTGDVVEVVEKSENGWWFCQLKAKRGWVPASYLE 52

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A+A++ +      +LS   GD +++RK     W  GEC GK G+FP++ V+
Sbjct: 2   AKALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
             +A++ F      EL    GD + V   S   W +GE +G+ G FP+  V+ 
Sbjct: 1   RVQALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 351
           A++ F A    EL   VGD + +      GW EGE KG+ G FP
Sbjct: 4   ALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFP 47

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 308 AIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A+ P+TA +E ELS   GD + V+ K  P  W  GE  G+ G FPS  VE
Sbjct: 4   ALFPYTAQNEDELSFQKGDIINVLSKDDPDWW-RGELNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEG--ECKGKAGWFPSANVEK 357
            I P+   SE EL L  GD V V K    GW +G  +  GK G FP + VE 
Sbjct: 4   VIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVES 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212729 cd11795, SH3_DNMBP_N2, Second N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 309 IHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 357
           I  FT+     L+L  GD V +   + SGW +G  C G +G+FPS+ V++
Sbjct: 5   IEAFTSQEPGHLNLQRGDLVELTGTTDSGWLQGRSCWGSSGFFPSSCVQE 54

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVV-RKVSPSGWSEGE-CKGKAGWFPSANVE 356
              A++ F +    ELSL  G+ + + R+    GW EG   +G+ G FPS+ VE
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212784 cd11850, SH3_Abl, Src homology 3 domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECK--GKAGWFPS 352
           A++ F A+ E +LS+  G+ + V   + +G W E E K  G  GW PS
Sbjct: 4   ALYDFVASGENQLSIKKGEQLRVLGYNKNGEWCEAESKSTGGQGWVPS 51

Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) PTK that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 352
           A+  ++   E E+ L  G+ V V  +   G+ EG  KG+ GWFP+
Sbjct: 5   AVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVKGRTGWFPA 49

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFP 351
           A A++P+ A  E  LS   GD + V +     W  GE   G+ GWFP
Sbjct: 2   ATALYPWRAKKENHLSFAKGDIITVLE-QQEMWWFGELEGGEEGWFP 47

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSP---SGWSEGECKGKAGWFPSANVE 356
           L  A++ + A S++ELS   G  + ++RK       GW EGE  G+ G FPS  VE
Sbjct: 1   LVRALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPSLVVE 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           LAEA+        +EL    GD + V  +S   W  G  + + GWFP++ V
Sbjct: 1   LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           AI+ ++   + ELS   G  + V K +  GW EG C G  G FP   VE
Sbjct: 4   AIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFP 351
           + + P+ A +E EL++  GD V +  +    +GW EGE  G+ G FP
Sbjct: 3   KVLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFP 49

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 22/44 (50%)

Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           + A  E ELSL  G  V V +    GW  G   G+ GWFPS  V
Sbjct: 9   YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVR----KVSPSGWSEGEC--KGKAGWFPSANVEK 357
            ++P+T   E EL L  GDY+ V       S  GW EG     G +G  P    EK
Sbjct: 4   VLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYTEK 59

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 307 EAIHPF--TAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 351
           EAI  F   A  E EL++ VGD +   K    GW EGE KG+ G FP
Sbjct: 1   EAIVEFDYKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFP 47

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 351
           A A++ FT  +E ELS   GD +   +     W  GE +GK+G FP
Sbjct: 2   ARALYDFTGENEDELSFKAGDIITELESIDEEWMSGELRGKSGIFP 47

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
            +A+  F    + EL    GD++ V   S   W +G C G+ G FP   V 
Sbjct: 2   VQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A A   F A + KEL L  GD V + K     W EGE  G+ G FP + +E
Sbjct: 3   ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           F A S KEL+L  GD V + K     W EGE  G+ G FP+  VE
Sbjct: 9   FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPS 352
           E I  +TA    ELSL   D V+V +    GW  GE    G+ GWFPS
Sbjct: 3   EIIKAYTAKQPDELSLQQADVVLVLQTESDGWYYGERLRDGERGWFPS 50

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 308 AIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFP 351
           A+  +   +E EL    G+ +++  +     GW +GE  GK G FP
Sbjct: 6   ALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFP 51

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSAN 354
             A++ F      +LS   GD + V  R  S   W EG  +G+ G FP AN
Sbjct: 2   VTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFP-AN 51

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A A++ + AA + E+S    D +   ++   GW  G C+GK G FP+  VE
Sbjct: 2   AVALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A++ +TA +E ELS   G  + V       W +GE  G  G FPS  V+
Sbjct: 5   AMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
            A+H + A   ++L    GD + V       W EG   G+ G FP   V 
Sbjct: 3   VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 312 FTAASEKELSLGVGDYVV-VRKVSPSGWSEGECKGKAGWFP 351
           + A  E EL++ VG+ +  V+K+   GW EGE  G+ G FP
Sbjct: 8   YDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFP 48

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A+A++ + AA + ELS    D ++  +     W  GEC G  G FPS  VE
Sbjct: 2   AKALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYVE 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           AEA+  FT  S+ EL+   GD + +       W EG  +G  G FP + V+
Sbjct: 2   AEALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFVK 52

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
             A++ F A  + EL    GD + V   S   W +G   GK G FP+  V 
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYVA 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 309 IHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVE 356
           I  + A    EL+L   D ++VR+ S  GW EG     G+ GWFP ++VE
Sbjct: 5   IRSYKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212916 cd11983, SH3_Shank2, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 2

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
            +  +    E E+ L  GD V V  +   G+ EG  +G  GWFP+  V
Sbjct: 5   VVKSYQPQVEGEIPLHKGDRVKVLSIGEGGFWEGSARGHVGWFPAECV 52

Shank2, also called ProSAP1 (Proline-rich synapse-associated protein 1) or CortBP1 (Cortactin-binding protein 1), is found in neurons, glia, endocrine cells, liver, and kidney. It plays a role in regulating dendritic spine volume and branching and postsynaptic clustering. Mutations in the Shank2 gene are associated with autism spectrum disorder and mental retardation. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEK 357
           + +HP+ +    ELSL + D + +   +  GW  GE     + GWFPS+ VE+
Sbjct: 3   QCVHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVVEE 55

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVE 356
           A+A++ + AA + E+S   GD +   +    GW  G   KG+ G FP+  VE
Sbjct: 2   AKALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGEC--KGKAGWFPSANVEK 357
           +A++P  A  E +LS   GD + +    P  GW  GE    G+ GWFP A  E 
Sbjct: 4   KALYPHAAGGETQLSFEEGDVITLLGPEPRDGWHYGENERSGRRGWFPIAYTEP 57

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A  +H F A    +LSL  G+ V + +   + W  G+CK   G FP+ +V+
Sbjct: 2   AVVLHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 352
           AI+ F AA + EL+   GD + +   S   W +GE     G FPS
Sbjct: 5   AIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQGTGLFPS 49

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 20/49 (40%), Positives = 24/49 (48%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           AI+ +T   E ELS   G  + V K +  GW EG   G  G FP   VE
Sbjct: 7   AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 55

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            I+P+TA  + E++L  G  V V + +  GW +   +GK GW P++ ++K
Sbjct: 5   VIYPYTARDQDEINLEKGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKK 54

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A A++ +    + E+S    + +   ++   GW +G C G  G FP+  VE
Sbjct: 3   AVALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A++ F AA + EL+   G+ + V   S   W +G      G FP+  V  
Sbjct: 5   ALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFVTA 54

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
              ++ +TA  + ELS+  GD V V +    GW   E  G+ G  P   +EK
Sbjct: 2   YSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYLEK 53

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 302 VYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSP----SGWSEG--ECKGKAGWFPSAN 354
           V +   A H +TA    EL+   GD + V+    P     GW  G  E  G  G FP  N
Sbjct: 1   VLYKVRATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGWLMGVKESTGCRGVFP-EN 59

Query: 355 VEKR 358
             +R
Sbjct: 60  FTER 63

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           AEA+      + +EL+   GD + V   S   W  G+   + GWFP++ V
Sbjct: 7   AEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 56

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPS---GWSEGECKGKAGWFPSANVE 356
           A A++   A  E ELS   G   ++  V PS   GW EG   G+ G  P   VE
Sbjct: 2   ARALYACKAEDESELSFEPGQ--IITNVQPSDEPGWLEGTLNGRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A A + F A +  ELS   GD + + +     W EG   G+ G FP + V+
Sbjct: 2   ARAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
            A+A+  +TA  +  L+    D + V +   + W  GE  G  GWFP + V+
Sbjct: 1   KAQALCSWTAKKDNHLNFSKNDIITVLEQQENWWF-GEVHGGRGWFPKSYVK 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212950 cd12017, SH3_Tks_3, Third Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 309 IHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           I  F A  +  +S   G  V V   +PSGW   +  GK GW PS+ +EK
Sbjct: 5   IGEFQATIQDGISFQKGQKVEVIDKNPSGWWYVKIDGKEGWAPSSYIEK 53

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the third SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
cd07607	209	BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domai	100.0
KOG1118	366	consensus Lysophosphatidic acid acyltransferase en	100.0
cd07613	223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	99.95
cd07617	220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	99.95
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	99.95
cd07616	229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	99.94
cd07614	223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	99.94
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	99.93
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	99.92
cd07620	257	BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.9
cd07619	248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.9
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	99.88
cd07618	246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.88
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	99.84
cd07600	242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	99.82
KOG3725	375	consensus SH3 domain protein SH3GLB [Signal transd	99.7
KOG3771	460	consensus Amphiphysin [Intracellular trafficking,	99.58
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	99.51
smart00721	239	BAR BAR domain.	99.45
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.45
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	99.43
cd07588	211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	99.34
cd07612	211	BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B	99.31
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.31
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	99.25
cd07611	211	BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR)	99.24
cd07590	225	BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B	99.22
KOG2070	661	consensus Guanine nucleotide exchange factor [Nucl	99.18
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.1
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	99.09
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.06
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	99.05
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.03
KOG2199	462	consensus Signal transducing adaptor protein STAM/	99.02
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.96
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	98.95
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	98.93
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	98.88
cd07639	200	BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.77
cd07606	202	BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain	98.76
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	98.75
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	98.75
cd07603	200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	98.73
KOG2856	472	consensus Adaptor protein PACSIN [Signal transduct	98.73
KOG3523	695	consensus Putative guanine nucleotide exchange fac	98.7
PF10455	289	BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr	98.69
cd07591	224	BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o	98.69
cd07634	207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	98.66
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	98.65
cd07602	207	BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR	98.57
cd07642	215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.53
cd07637	200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	98.52
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.47
KOG2546	483	consensus Abl interactor ABI-1, contains SH3 domai	98.42
cd07636	207	BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G	98.38
cd07601	215	BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A	98.37
cd07638	200	BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.36
cd07635	207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.35
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	98.34
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.26
KOG1702	264	consensus Nebulin repeat protein [Cytoskeleton]	98.24
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	98.24
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	98.22
KOG3655	484	consensus Drebrins and related actin binding prote	98.22
PF08397	219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	98.18
cd07589	195	BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of	98.13
KOG4792	293	consensus Crk family adapters [Signal transduction	98.07
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	98.06
cd07641	215	BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.04
KOG3875	362	consensus Peroxisomal biogenesis protein peroxin [	98.03
KOG1843	473	consensus Uncharacterized conserved protein [Funct	97.86
cd07640	213	BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	97.85
cd07633	207	BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of	97.8
KOG4773	386	consensus NADPH oxidase [Energy production and con	97.78
KOG2222	848	consensus Uncharacterized conserved protein, conta	97.7
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	97.62
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	97.6
cd07605	223	I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5	97.58
cd07631	215	BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of	97.57
PF06456	229	Arfaptin: Arfaptin-like domain; InterPro: IPR01050	97.5
cd07632	215	BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of	97.32
KOG4429	421	consensus Uncharacterized conserved protein, conta	97.26
KOG2528	490	consensus Sorting nexin SNX9/SH3PX1 and related pr	97.2
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	97.14
cd07643	231	I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I	97.13
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	97.09
cd07624	200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	97.08
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	97.05
KOG4792	293	consensus Crk family adapters [Signal transduction	97.03
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	96.98
cd07625	230	BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of	96.88
cd07660	201	BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain	96.69
PF06730	219	FAM92: FAM92 protein; InterPro: IPR009602 This fam	96.65
KOG4575	874	consensus TGc (transglutaminase/protease-like) dom	96.56
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	96.49
KOG3775	482	consensus Mitogen-activated protein kinase scaffol	96.45
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	96.4
cd00011	203	BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do	96.17
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	96.06
KOG3557	721	consensus Epidermal growth factor receptor kinase	96.03
cd07621	219	BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of	95.83
KOG0040	2399	consensus Ca2+-binding actin-bundling protein (spe	95.71
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	95.66
cd07628	185	BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of	95.6
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.39
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.29
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	94.96
cd07646	232	I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th	94.88
KOG0521	785	consensus Putative GTPase activating proteins (GAP	94.74
cd07645	226	I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as	94.66
KOG3565	640	consensus Cdc42-interacting protein CIP4 [Cytoskel	94.51
cd07622	201	BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S	94.37
cd07626	199	BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain	94.02
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	93.76
cd07663	218	BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S	93.43
cd07659	215	BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of	93.04
cd07665	234	BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S	92.89
cd07630	198	BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain	92.74
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	92.64
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	92.28
cd07644	215	I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as	91.38
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	90.61
cd07657	237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	89.72
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	88.01
KOG3876	341	consensus Arfaptin and related proteins [Signal tr	87.97
cd07667	240	BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of	87.96
smart00287	63	SH3b Bacterial SH3 domain homologues.	87.22
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	85.98
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	85.82
PRK10884	206	SH3 domain-containing protein; Provisional	85.81
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	85.51
cd07629	187	BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of	84.9
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	82.88
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	82.6
cd07652	234	F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Am	82.44
cd07662	218	BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S	81.19

>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins

Probab=100.00  E-value=1.5e-79  Score=552.23  Aligned_cols=207  Identities=54%  Similarity=0.842  Sum_probs=203.2

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467           68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  147 (371)
Q Consensus        68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~  147 (371)
                      |+|||||+||||||||||||||||||||++|+||+|+++||+|||||||+|++  +.+++|++|.++||.|+++|+++++
T Consensus         1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~--~~~~~LsrAa~~yG~a~~~mEkEre   78 (209)
T cd07607           1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP--SVNTALSRASLHYGSARNQMEKERE   78 (209)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC--CcccHHHHHHHHHhHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999998  3667899999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHHHHH
Q 017467          148 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKAN  226 (371)
Q Consensus       148 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~  226 (371)
                      +|++.|++||+|||++|++|+||||||||+|+||||||++|+|++||.||+.|+||+. |||++.||+.||+||+|||++
T Consensus        79 ~l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~  158 (209)
T cd07607          79 NLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSS  158 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999986 999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467          227 MAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  276 (371)
Q Consensus       227 m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~  276 (371)
                      |+.|||||++||..||.|||++|+++|++||++++.||+++++||++|+.
T Consensus       159 M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~  208 (209)
T cd07607         159 MNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHD  208 (209)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999985

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=7e-52  Score=397.01  Aligned_cols=244  Identities=20%  Similarity=0.378  Sum_probs=212.0

Q ss_pred             HHHHHHHHHh-hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 017467           86 DLVKVAEVFT-AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM  164 (371)
Q Consensus        86 ~~vr~~~~~~-~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~  164 (371)
                      .++.-|+|-. ..||||+|+  .||+||.+||.++|   .+|+||.+|+++|+||++|++++++|+++|+++|||||+++
T Consensus        67 n~lsKvrG~~k~~~ypq~e~--~Lg~~mik~gkeLg---~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l  141 (366)
T KOG1118|consen   67 NTLSKVRGQVKEKGYPQTEG--LLGDVMIKHGKELG---DDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNL  141 (366)
T ss_pred             HHHHHhcccccCCCCccchh--HHHHHHHHHHHhcC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            4666667655 579999999  89999999999999   89999999999999999999999999999999999999999


Q ss_pred             hhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017467          165 ITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAA  236 (371)
Q Consensus       165 ~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~  236 (371)
                      +.++++++        ||||||||++             +|++|++     |  ++|++|.+||+|+++.       |+.
T Consensus       142 ~~~elK~i~hh~KKLEgRRldyD~kk-------------kk~~K~~-----d--EelrqA~eKfEESkE~-------aE~  194 (366)
T KOG1118|consen  142 QLKELKDIQHHRKKLEGRRLDYDYKK-------------KKQGKIK-----D--EELRQALEKFEESKEL-------AED  194 (366)
T ss_pred             hHHHHHHHHHHHHHhhhhhhHHHHHH-------------HHhccCC-----h--HHHHHHHHHHHHHHHH-------HHH
Confidence            99999985        9999999999             8999974     4  6999999999999998       999


Q ss_pred             HHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhh------hhcCCCCCCCC---------CC---C--
Q 017467          237 ALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSE------KQRKESAPPVI---------PS---E--  295 (371)
Q Consensus       237 am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~se------r~r~es~~pp~---------~~---~--  295 (371)
                      +|.++ |.+.+|  ++||.++|+++++||+++++||+.|...+.+.      +++.++.|.+.         ++   +  
T Consensus       195 sM~nlle~d~eq--vsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~~prrey~p~~~~an~f~p~~~p~~~~g~  272 (366)
T KOG1118|consen  195 SMFNLLENDVEQ--VSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRDASSQPRREYVPRSVLANEFAPSGPPIQLNGK  272 (366)
T ss_pred             HHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCchhhcCCcccccccCCCCCCccccCCC
Confidence            99975 556677  89999999999999999999999999987662      23332222110         00   0  


Q ss_pred             ----------------------CCc----ccccceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeE
Q 017467          296 ----------------------NSS----QKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGW  349 (371)
Q Consensus       296 ----------------------s~s----~~~~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~  349 (371)
                                            +.+    ++++.++|+++|||+|++++||.|++||+|.|++++++|||+|+..|..|+
T Consensus       273 ~s~T~~t~~~ass~~~is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~  352 (366)
T KOG1118|consen  273 LSKTTSTPQSASSPSNISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGM  352 (366)
T ss_pred             CCcCccCccccCCcccCCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCc
Confidence                                  000    234567999999999999999999999999999999999999999999999


Q ss_pred             ecCCceeeccCCCC
Q 017467          350 FPSANVEKRQRIPV  363 (371)
Q Consensus       350 FPsnYVE~i~~lP~  363 (371)
                      ||.|||+++.|+|.
T Consensus       353 FPvnYv~vlvpl~~  366 (366)
T KOG1118|consen  353 FPVNYVEVLVPLPQ  366 (366)
T ss_pred             cccceeEEeccCCC
Confidence            99999999999874

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1

Probab=99.95  E-value=4e-27  Score=221.08  Aligned_cols=151  Identities=25%  Similarity=0.400  Sum_probs=137.1

Q ss_pred             hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 017467           96 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED---  172 (371)
Q Consensus        96 ~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~---  172 (371)
                      .++|||+|+  .||+||.+||.++|   .+|.||.||+.||+|+++|+.++.+++..++++||+||+.+..++++++   
T Consensus        59 ~~~~p~~~~--~Lg~~M~~~G~elg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~  133 (223)
T cd07613          59 GPGYPQAEA--LLAEAMLKFGRELG---DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHH  133 (223)
T ss_pred             CCCCCChHh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999  89999999999999   8999999999999999999999999999999999999999999999875   


Q ss_pred             -----hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhh
Q 017467          173 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQH  246 (371)
Q Consensus       173 -----~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqq  246 (371)
                           +||||+||+|             +|..|+     ++  ++|++|+.||+++++.       +...|.++ ++...
T Consensus       134 RKkLe~rRLd~D~~K-------------~r~~k~-----~e--eElr~A~~kFees~E~-------a~~~M~n~l~~e~e  186 (223)
T cd07613         134 LKKLEGRRLDFDYKK-------------KRQGKI-----PD--EELRQALEKFDESKEI-------AESSMFNLLEMDIE  186 (223)
T ss_pred             HHHHHHHHHhHHHHH-------------HhCCCC-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHcCch
Confidence                 9999999998             666554     34  7999999999999998       88889975 44455


Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467          247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  280 (371)
Q Consensus       247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s  280 (371)
                      +  +++|..||+||++||++|.+||.+|...+..
T Consensus       187 ~--~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~  218 (223)
T cd07613         187 Q--VSQLSALVQAQLEYHKQATQILQQVTVKLED  218 (223)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5  6799999999999999999999999998863

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2

Probab=99.95  E-value=1.3e-26  Score=217.04  Aligned_cols=173  Identities=17%  Similarity=0.200  Sum_probs=148.5

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHHHHHh-------------------hcCcchhhhhhhHhHHHhhhhccCCCCCCCCc
Q 017467           67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT-------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINENI  127 (371)
Q Consensus        67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~-------------------~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~  127 (371)
                      .++|++.--+|+.+-   .+|++.++.++                   .+++||+|.  .||+||.+||.++|   .+|.
T Consensus        19 f~~l~~~~D~tk~~~---~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~--~Lg~~M~~~g~~~g---~~s~   90 (220)
T cd07617          19 FENLLARADSTKNWT---EKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAE--LLGQYMTEAANDFG---PGTP   90 (220)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHH--HHHHHHHHHHHhcC---CCCc
Confidence            567888777777653   34555444443                   457899999  89999999999999   7999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHH
Q 017467          128 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQ  199 (371)
Q Consensus       128 l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~  199 (371)
                      ||.||+.||+|+++|++++++++..++++||+||++++.++++++        +|||||||.|             +|+.
T Consensus        91 ~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K-------------~r~~  157 (220)
T cd07617          91 YGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACK-------------ARLK  157 (220)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHh
Confidence            999999999999999999999999999999999999999999875        9999999999             6665


Q ss_pred             hhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017467          200 RVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE  277 (371)
Q Consensus       200 K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~  277 (371)
                      |      +|  .+|++|++||+++++.       +...|..+ +.+.++  +.+|.+||+|+++||++|++||.+|...
T Consensus       158 k------ae--~elr~A~~kf~~~~E~-------a~~~M~~il~~~~e~--l~~L~~lv~AQl~Yh~q~~e~L~~l~~~  219 (220)
T cd07617         158 K------AE--HELRVAQTEFDRQAEV-------TRLLLEGISSTHVNH--LRCLHEFVEAQATYYAQCYRHMLDLQKQ  219 (220)
T ss_pred             c------cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5      45  6999999999999998       88889876 333455  8899999999999999999999998864

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=99.95  E-value=2.1e-26  Score=216.28  Aligned_cols=156  Identities=22%  Similarity=0.381  Sum_probs=139.1

Q ss_pred             HHHHh-hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh
Q 017467           91 AEVFT-AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP  169 (371)
Q Consensus        91 ~~~~~-~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~  169 (371)
                      ++|=. .++|||.|+  .||+||.+||.++|   .+|+||.||+.||+|+++|+.++.+++..++++||+||+.++.+++
T Consensus        53 ~~g~~k~~~~p~~~~--~Lg~~M~~~G~~lg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~di  127 (223)
T cd07615          53 IRGQVKTTGYPQTEG--LLGDCMLRYGRELG---EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDL  127 (223)
T ss_pred             HhcccccCCCCCchh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34443 578999999  89999999999999   8999999999999999999999999999999999999999999999


Q ss_pred             hhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017467          170 LED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI  241 (371)
Q Consensus       170 ~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v  241 (371)
                      +++        +||||+||+|             +|..|+     ++  +++++|+.||+++++.       +...|.++
T Consensus       128 k~i~k~RKkLe~rRLd~D~~K-------------~r~~k~-----~~--eE~~~A~~kfees~E~-------a~~~M~n~  180 (223)
T cd07615         128 KEIGHHLKKLEGRRLDFDYKK-------------KRQGKI-----PD--EEIRQAVEKFEESKEL-------AERSMFNF  180 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------------HcCCCC-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            874        9999999998             555553     34  6999999999999998       99999986


Q ss_pred             -HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467          242 -EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  280 (371)
Q Consensus       242 -e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s  280 (371)
                       +.+.++  +++|.+||+||++||+++++||.+|...+..
T Consensus       181 le~e~e~--~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~  218 (223)
T cd07615         181 LENDVEQ--VSQLSVLIEAALDYHRQSTEILEDLQSKLQN  218 (223)
T ss_pred             HHcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             444555  8899999999999999999999999998863

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1

Probab=99.94  E-value=3e-25  Score=209.23  Aligned_cols=181  Identities=17%  Similarity=0.206  Sum_probs=148.6

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHHHHHh-------------------hcCcchhhhhhhHhHHHhhhhccCCCCCCCCc
Q 017467           67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT-------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINENI  127 (371)
Q Consensus        67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~-------------------~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~  127 (371)
                      .++|||.--+|+.+-+   +|++.++.++                   .++|||+|.  .||+||.+||.++|   .+|.
T Consensus        19 f~~l~~~~d~t~~~~~---~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~--~Lg~~M~~~g~~~g---~~S~   90 (229)
T cd07616          19 LENLLSKAECTKHWTE---KIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPE--LLGQYMIDAGNEFG---PGTA   90 (229)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHH--HHHHHHHHHHHhcC---CCCc
Confidence            5677777777765432   3333333222                   268999999  89999999999999   8999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHH
Q 017467          128 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQ  199 (371)
Q Consensus       128 l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~  199 (371)
                      ||.||+.||+|+++|++++.+|...++++|++||++.+.++++++        +|||||||.|             .|+.
T Consensus        91 ~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K-------------~r~~  157 (229)
T cd07616          91 YGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAK-------------TRLK  157 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHh
Confidence            999999999999999999999999999999999999999999874        9999999999             6666


Q ss_pred             hhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017467          200 RVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE  277 (371)
Q Consensus       200 K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~  277 (371)
                      |.+... .+...++|+.|++||++..+.       +...|..+.+ +..+  +.+|..||+|+++||++|.+||.+|...
T Consensus       158 kAk~~~~~~~~e~elr~ae~efees~E~-------a~~~m~~i~~~~~e~--~~~L~~lv~AQl~Yh~~~~e~L~~L~~~  228 (229)
T cd07616         158 KAKVAEARAAAEQELRITQSEFDRQAEI-------TRLLLEGISSTHAHH--LRCLNDFVEAQMTYYAQCYQYMLDLQKQ  228 (229)
T ss_pred             cCCcchhhcchHHHHHHHHHHHHHHHHH-------HHHHHHhhhhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            643322 333347999999999999998       7777877643 3344  7899999999999999999999999865

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2

Probab=99.94  E-value=1.3e-25  Score=211.16  Aligned_cols=151  Identities=24%  Similarity=0.404  Sum_probs=135.9

Q ss_pred             hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 017467           96 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED---  172 (371)
Q Consensus        96 ~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~---  172 (371)
                      .+||||+|+  .||+||.+||.++|   ++|.||.||+.||+|+++|+.++.+++..++++|++||+.++.++++++   
T Consensus        59 ~~~~p~~~~--~Lg~~M~~~G~~lg---~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~  133 (223)
T cd07614          59 NPGYPQSEG--LLGETMIRYGKELG---DESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHH  133 (223)
T ss_pred             CCCCCChHh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358999999  89999999999999   8999999999999999999999999999999999999999999999875   


Q ss_pred             -----hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hhh
Q 017467          173 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQH  246 (371)
Q Consensus       173 -----~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqq  246 (371)
                           +|||||||+|             +|..|+     ++  ++|+.|.+||+++++.       +...|..+-+ ...
T Consensus       134 RKkLe~rRLdyD~~K-------------~r~~k~-----~e--eelr~a~ekFees~E~-------a~~~M~~il~~e~e  186 (223)
T cd07614         134 LKKLEGRRLDFDYKK-------------KRQGKI-----PD--EELRQAMEKFEESKEV-------AETSMHNLLETDIE  186 (223)
T ss_pred             HHHHHHHHHHHHHHH-------------HcCCCC-----ch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCChH
Confidence                 9999999998             555553     34  6999999999999998       8888987633 344


Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467          247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  280 (371)
Q Consensus       247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s  280 (371)
                      +  +.+|..||+||++||++|++||.+|...+..
T Consensus       187 ~--~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~~  218 (223)
T cd07614         187 Q--VSQLSALVDAQLDYHRQAVQILDELAEKLKR  218 (223)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  7899999999999999999999999999873

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=99.93  E-value=5.6e-25  Score=207.06  Aligned_cols=151  Identities=24%  Similarity=0.393  Sum_probs=134.6

Q ss_pred             hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 017467           96 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED---  172 (371)
Q Consensus        96 ~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~---  172 (371)
                      ..+|||+|+  .||+||.+||.++|   ++|.||.||+.||+|+.+|+.++.+++..++++|++||+.++.++++++   
T Consensus        59 ~~~~p~~~~--~Lg~~M~~~g~elg---~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~  133 (223)
T cd07592          59 STKYPQPEG--LLGEVMLKYGRELG---EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHH  133 (223)
T ss_pred             ccCCCCccc--HHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999  89999999999999   7899999999999999999999999999999999999999999998874   


Q ss_pred             -----hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hhh
Q 017467          173 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQH  246 (371)
Q Consensus       173 -----~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqq  246 (371)
                           +|||||||.|             +|..|.     ++  ++|+.|+.||+++++.       +...|..+-+ ...
T Consensus       134 RKkLe~rRLdyD~~k-------------~k~~k~-----~e--eEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e  186 (223)
T cd07592         134 RKKLEGRRLDYDYKK-------------RKQGKG-----PD--EELKQAEEKFEESKEL-------AENSMFNLLENDVE  186 (223)
T ss_pred             HHHHHHHHHHHHHHH-------------HhcccC-----ch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCchH
Confidence                 9999999998             554442     34  7999999999999998       8888887533 344


Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467          247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  280 (371)
Q Consensus       247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s  280 (371)
                      +  +..|..||+||++||++|+++|..|...+..
T Consensus       187 ~--~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~  218 (223)
T cd07592         187 Q--VSQLSALVEAQLDYHRQSAEILEELQSKLQE  218 (223)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  7889999999999999999999999998874

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=99.92  E-value=5.5e-24  Score=201.01  Aligned_cols=180  Identities=17%  Similarity=0.242  Sum_probs=147.2

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHHHHHh--------------------hcCcchhhhhhhHhHHHhhhhccCCCCCCCC
Q 017467           67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT--------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINEN  126 (371)
Q Consensus        67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~--------------------~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~  126 (371)
                      ..+||+-.-+|+.+-+   +|++..+.++                    ..+||+.|.   ||+||..||.++|   .+|
T Consensus        19 f~~le~~~d~~~~~~e---~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~---Lg~~M~~~g~~lg---~~S   89 (229)
T cd07594          19 FENLLQRADKTKVWTE---KILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQ---LGQAMIEAGNDFG---PGT   89 (229)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHH---HHHHHHHHHhhCC---CCC
Confidence            4567777666665432   3444444444                    458999986   9999999999999   789


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHH
Q 017467          127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQ  198 (371)
Q Consensus       127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq  198 (371)
                      .||.||+.||+|+++|+.++.+++..++++||+||++++.++++++        +||||||+.|             .|.
T Consensus        90 ~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k-------------~r~  156 (229)
T cd07594          90 AYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACK-------------TRV  156 (229)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Confidence            9999999999999999999999999999999999999999999875        9999999999             565


Q ss_pred             HhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467          199 QRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  276 (371)
Q Consensus       199 ~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~  276 (371)
                      .|.+... .+....+|+.|++||+++.+.       +...|..|-+ +..+  +.+|..||+|+++||++|+++|.+|..
T Consensus       157 ~kAk~~~~~~~~e~elr~Ae~kF~~~~E~-------a~~~M~~i~~~~~~~--~~~L~~lv~AQl~Yh~q~~e~L~~l~~  227 (229)
T cd07594         157 KKAKSAEAIEQAEQDLRVAQSEFDRQAEI-------TKLLLEGISSTHANH--LRCLRDFVEAQMTYYAQCYQYMDDLQR  227 (229)
T ss_pred             hhcCCccchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5543111 112237999999999999998       8888997643 4455  789999999999999999999999986


Q ss_pred             H
Q 017467          277 E  277 (371)
Q Consensus       277 ~  277 (371)
                      .
T Consensus       228 ~  228 (229)
T cd07594         228 Q  228 (229)
T ss_pred             h
Confidence            5

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1

Probab=99.90  E-value=1.5e-22  Score=192.45  Aligned_cols=203  Identities=12%  Similarity=0.089  Sum_probs=153.0

Q ss_pred             eecHHHHHHHHHHHHHHhhhhch-hhhhHHHHHHHHHHhhc-----CcchhhhhhhHhHHHhhhhccCCCCCCCCchhHH
Q 017467           58 VIDEVEMQRHQQLEKLYRSTRGT-KDFQRDLVKVAEVFTAI-----GYKHIEAGTKLSEDCCRYGAENNQNINENILPKA  131 (371)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~vr~~~~~~~~-----~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A  131 (371)
                      |+||.    -+++||---.||.+ -+..|.++-|.-|-.++     -.|-+|+  .||+||.+||.++|   ++|.||+|
T Consensus        12 ~L~ed----l~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~--~Ls~~M~es~keLg---~dS~lg~a   82 (257)
T cd07620          12 LLTED----LVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLM--ALSISMAESFKDFD---AESSIRRV   82 (257)
T ss_pred             hhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHh--HHHHHHHHHHhhCC---CcchHHHH
Confidence            45664    45566666566544 44555555554431110     2467888  89999999999999   78999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHH-------
Q 017467          132 AAIYGDAR-KHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVS-------  195 (371)
Q Consensus       132 ~~~~g~a~-~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~-------  195 (371)
                      | ++|.++ ++|++++++++.+|+++|++||+.++++|+.++        +|+||+||+|-|..-........       
T Consensus        83 L-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~  161 (257)
T cd07620          83 L-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEV  161 (257)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccc
Confidence            9 999999 999999999999999999999999999999987        99999999996553211100000       


Q ss_pred             ------HHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHH
Q 017467          196 ------KRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIA  268 (371)
Q Consensus       196 ------rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~  268 (371)
                            ...+|+-   .++  ++++.|+.||+++|+.       +++.|..+ ..+.++  +++|+.||+++.+||++++
T Consensus       162 ~~~~~~~~~~K~~---~lk--eE~eea~~K~E~~kd~-------~~a~Mynfl~kE~e~--a~~l~~lveaQ~~YHrqsl  227 (257)
T cd07620         162 GEHQGIRRANKGE---PLK--EEEEECWRKLEQCKDQ-------YSADLYHFATKEDSY--ANYFIRLLELQAEYHKNSL  227 (257)
T ss_pred             ccccccccccccc---ccH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHH
Confidence                  0112210   133  6999999999999998       88888863 444455  7889999999999999999


Q ss_pred             HHHHHhHHHHhhhhhc
Q 017467          269 AILGDVEAEMVSEKQR  284 (371)
Q Consensus       269 ~IL~~L~~~l~ser~r  284 (371)
                      +||+.+..++...-..
T Consensus       228 ~~Le~~l~~~~~~~~~  243 (257)
T cd07620         228 EFLDKNITELKENHSQ  243 (257)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999998865433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2

Probab=99.90  E-value=2.7e-22  Score=191.03  Aligned_cols=197  Identities=14%  Similarity=0.151  Sum_probs=139.7

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHHHHHh-----------hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHH
Q 017467           67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT-----------AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY  135 (371)
Q Consensus        67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~-----------~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~  135 (371)
                      .++|||---+|+.+-|   +|++-++.+.           ..+|||+    .||+||.+||+++|   .+|.||.||..|
T Consensus        17 ~~~le~r~D~~k~~~~---~i~kk~~~~LQpnp~~r~ekr~~k~P~~----~L~q~M~~~g~elg---~~s~lg~aL~~~   86 (248)
T cd07619          17 LLQVEKRLELVKQVSH---STHKKLTACLQGQQGVDADKRSKKLPLT----TLAQCMVEGAAVLG---DDSLLGKMLKLC   86 (248)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHhCCCcHHHHHHhccCCCHH----HHHHHHHHHHHhcC---CCchHHHHHHHH
Confidence            5678887777765543   3444443333           3467765    59999999999999   789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHH--HhhccCC
Q 017467          136 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQ--QRVREAP  205 (371)
Q Consensus       136 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq--~K~re~~  205 (371)
                      |+|+++|++++.+++..++++|++||++++++|++++        +||||+||.|.|..--.....-..+.  .++++  
T Consensus        87 gea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~--  164 (248)
T cd07619          87 GETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKA--  164 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCcc--
Confidence            9999999999999999999999999999999999875        99999999995543110000000000  01100  


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhc
Q 017467          206 NPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQR  284 (371)
Q Consensus       206 ~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~ser~r  284 (371)
                       .+.-+++..|+.+|+..|..       ++..|..+ ....++  +..|..||+||++||+++++||+.+...+......
T Consensus       165 -e~lr~e~E~ae~~~e~~kd~-------~~~~m~~~l~~e~e~--~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~  234 (248)
T cd07619         165 -DALREEMEEAANRMEICRDQ-------LSADMYSFVAKEIDY--ANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEA  234 (248)
T ss_pred             -HHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             01112344455555555545       56666653 444444  66799999999999999999999999988765444


Q ss_pred             C
Q 017467          285 K  285 (371)
Q Consensus       285 ~  285 (371)
                      |
T Consensus       235 ~  235 (248)
T cd07619         235 W  235 (248)
T ss_pred             c
Confidence            4

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=99.88  E-value=4.8e-21  Score=179.58  Aligned_cols=150  Identities=20%  Similarity=0.263  Sum_probs=126.3

Q ss_pred             cchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh------
Q 017467           99 YKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED------  172 (371)
Q Consensus        99 ~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~------  172 (371)
                      .+.++.  .||+||..||.++|   .+|.||.||+.||+|+++|+.+++.|...++++|++||+..+. +.+++      
T Consensus        49 k~~p~~--~Lg~~M~~~g~~lg---~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKk  122 (215)
T cd07593          49 KCLPVE--ALGLVMINHGEEFP---QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKK  122 (215)
T ss_pred             cCChHH--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            344566  79999999999999   7999999999999999999999999999999999999998874 77764      


Q ss_pred             --hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHh
Q 017467          173 --ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRL  248 (371)
Q Consensus       173 --~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqqrl  248 (371)
                        +||||||+.|             -|..|.+... .++  ++|+.|++||++.++.       +...|..+-+ ...+ 
T Consensus       123 Le~rRLdyD~~k-------------sk~~kak~~~~~~e--eElr~Ae~kfees~E~-------a~~~M~~i~~~e~e~-  179 (215)
T cd07593         123 LESRRLAYDAAL-------------TKSQKAKKEDSRLE--EELRRAKAKYEESSED-------VEARMVAIKESEADQ-  179 (215)
T ss_pred             HHHHHHHHHHHH-------------HHHHhccccchhHH--HHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH-
Confidence              8999999888             3333332221 344  7999999999999998       8888987643 3455 


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467          249 TFQRLVAMVEGEKNYHLRIAAILGDVEAEM  278 (371)
Q Consensus       249 t~~~L~~~veae~~yhq~~~~IL~~L~~~l  278 (371)
                       +.+|..||+||++||++|.+||.+|....
T Consensus       180 -~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~  208 (215)
T cd07593         180 -YRDLTDLLDAELDYHQQSLDVLREVRQSW  208 (215)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             78999999999999999999999988753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1

Probab=99.88  E-value=6.6e-21  Score=181.62  Aligned_cols=184  Identities=18%  Similarity=0.213  Sum_probs=144.4

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHHHHH-----------hhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHH
Q 017467           67 HQQLEKLYRSTRGTKDFQRDLVKVAEVF-----------TAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY  135 (371)
Q Consensus        67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~-----------~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~  135 (371)
                      .++||+---+||.+-+   +|++.++++           +..+|  +|.  .||+||.+||.++|   .+|.||.||..|
T Consensus        17 ~~~le~r~D~~k~~~~---~i~k~~~~~lqpnp~~r~ek~~kk~--p~~--~Lgq~M~e~~~~lg---~~s~~g~aL~~~   86 (246)
T cd07618          17 LLQIERRLDTVRSVSH---NVHKRLIACFQGQVGTDAEKRHKKL--PLT--ALAQNMQEGSAQLG---EESLIGKMLDTC   86 (246)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHcCCChHHHHHHHhccC--CHH--HHHHHHHHHHhcCC---CCccHHHHHHHH
Confidence            4678887777775543   444444444           23456  477  79999999999999   799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC--
Q 017467          136 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP--  205 (371)
Q Consensus       136 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~--  205 (371)
                      |+++++|++++.+++..++++|++||++++.++++++        +||||+||.|.             |..+...++  
T Consensus        87 gea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~-------------r~~~a~~~~~~  153 (246)
T cd07618          87 GDAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARG-------------RYNQAHKSSGT  153 (246)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHH-------------HHHhccccCcc
Confidence            9999999999999999999999999999999998765        89999999993             333321100  


Q ss_pred             C--------cccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467          206 N--------PENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  276 (371)
Q Consensus       206 ~--------~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~  276 (371)
                      |        +-..+++..|+.||++++..       +++.|..+ ....+.  +++|..+|+++++||+++++||+.+..
T Consensus       154 ~~~~~~~K~~~l~ee~e~a~~k~E~~kD~-------~~~dm~~~l~~e~e~--~~~l~~lv~aQ~eYHr~a~e~Le~~~p  224 (246)
T cd07618         154 NFQAMPSKIDMLKEEMDEAGNKVEQCKDQ-------LAADMYNFASKEGEY--AKFFVLLLEAQADYHRKALAVIEKVLP  224 (246)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1        10124789999999999998       55566643 333344  789999999999999999999999999


Q ss_pred             HHhhhh
Q 017467          277 EMVSEK  282 (371)
Q Consensus       277 ~l~ser  282 (371)
                      .+....
T Consensus       225 ~i~~~~  230 (246)
T cd07618         225 EIQAHQ  230 (246)
T ss_pred             HHHHHH
Confidence            887653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=99.84  E-value=2.4e-19  Score=170.99  Aligned_cols=158  Identities=18%  Similarity=0.246  Sum_probs=132.9

Q ss_pred             chhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh-------
Q 017467          100 KHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED-------  172 (371)
Q Consensus       100 ~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~-------  172 (371)
                      +-++.  .||.+|..||.++|   .+++||.||..||+|++.|++++.+++..+.++|++||+.+..++++++       
T Consensus        56 k~p~~--~Lg~~M~~~g~~l~---~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkL  130 (244)
T cd07595          56 KLPEY--GLAQSMLESSKELP---DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRL  130 (244)
T ss_pred             cCcHH--HHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566  79999999999999   7899999999999999999999999999999999999999999998875       


Q ss_pred             -hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccC-------C-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017467          173 -ARHLAQRYSRMRQEAETQAVEVSKRQQRVREA-------P-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA  243 (371)
Q Consensus       173 -~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~-------~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~  243 (371)
                       .||||||+.|             +|..|.+.+       . .+..-++++.|+.||+++++.       +...|..+-+
T Consensus       131 e~~RLd~D~~k-------------~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~-------~~~~M~~~l~  190 (244)
T cd07595         131 SKLVLDMDSAR-------------SRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDA-------LATDMYEFLA  190 (244)
T ss_pred             hhhhHHHHHHH-------------HHHHhccccccccccccccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence             8999999999             555443311       0 121136899999999999998       8899997533


Q ss_pred             -HhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhc
Q 017467          244 -QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQR  284 (371)
Q Consensus       244 -qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~ser~r  284 (371)
                       ..+.  +++|..||+||++||++++++|+.+...+..-...
T Consensus       191 ~E~e~--~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~  230 (244)
T cd07595         191 KEAEI--ASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQ  230 (244)
T ss_pred             ccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             2444  78999999999999999999999999998764333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins

Probab=99.82  E-value=3.2e-19  Score=169.98  Aligned_cols=211  Identities=17%  Similarity=0.226  Sum_probs=151.2

Q ss_pred             hhHHHhhhccCCCCCCccc--eecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhh-hhhHhHHHhhh
Q 017467           39 FQAVIKQFSASGYERSDVM--VIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEA-GTKLSEDCCRY  115 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~-~~~l~e~~~kY  115 (371)
                      +..|-+.|..-||--.-++  .+.+---.-+.+..-|=..| +....|.-++-     ..++.+++=. -.-||.+|..+
T Consensus        17 ~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t-~~~e~~~~l~~-----~~~~~~~pkTl~~aLs~~m~~~   90 (242)
T cd07600          17 ILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKAT-SPTEAQKVLLG-----TPAPAKLPKTLNHALSRAALAS   90 (242)
T ss_pred             HHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcC-ChhhhhhhhcC-----CCCCCCCCCcHHHHHHHHHHHH
Confidence            4477788887777321111  12222222345555444444 34455655432     2222223222 23599999999


Q ss_pred             hccCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhh
Q 017467          116 GAENNQN--INENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQ  185 (371)
Q Consensus       116 g~e~~~~--~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq  185 (371)
                      |.++|.+  .++++||.||+.||+|+.+|++.|..+|..++++|++||++++.++++++        +||||||+.|   
T Consensus        91 ~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K---  167 (242)
T cd07600          91 SLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTAR---  167 (242)
T ss_pred             HHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            9999921  22889999999999999999999999999999999999999999999874        9999999999   


Q ss_pred             HHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHH
Q 017467          186 EAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYH  264 (371)
Q Consensus       186 ~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yh  264 (371)
                                .|+.|.+... .++.-.++++||.+|.+.++.       |...|..+-+.-..  ++.|..||+||+.||
T Consensus       168 ----------~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~-------a~~~M~~il~~~e~--i~~L~~fv~AQl~Yh  228 (242)
T cd07600         168 ----------AELKSAEPAEKQEAARVEVETAEDEFVSATEE-------AVELMKEVLDNPEP--LQLLKELVKAQLAYH  228 (242)
T ss_pred             ----------HHHHhccccccccchHHHHHHHHHHHHHhHHH-------HHHHHHHHHhhhHH--HHHHHHHHHHHHHHH
Confidence                      4554442111 122347888999999999987       77888876443333  788999999999999


Q ss_pred             HHHHHHHHHhHHH
Q 017467          265 LRIAAILGDVEAE  277 (371)
Q Consensus       265 q~~~~IL~~L~~~  277 (371)
                      ++|+++|.+|...
T Consensus       229 ~~~~e~L~~l~~~  241 (242)
T cd07600         229 KTAAELLEELLSV  241 (242)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999998753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]

Probab=99.70  E-value=2e-15  Score=143.54  Aligned_cols=278  Identities=20%  Similarity=0.246  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcC-cchhh----------------hhhhHhHHHhhhhccCCCCCC
Q 017467           62 VEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIG-YKHIE----------------AGTKLSEDCCRYGAENNQNIN  124 (371)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~-~~q~E----------------~~~~l~e~~~kYg~e~~~~~~  124 (371)
                      -||--|  +|+|..-.-..|..-+.|.+..|++..+- .--+|                -+..|+..|.--|.|+|   .
T Consensus        33 TELDaH--fENLL~rAd~Tk~wTekil~qtEvlLQPNP~aR~EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efG---p  107 (375)
T KOG3725|consen   33 TELDAH--FENLLQRADKTKDWTEKILSQTEVLLQPNPTARMEEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFG---P  107 (375)
T ss_pred             hhHHHH--HHHHHHHhhhhhHHHHHHHHhhheecCCCcchhHHHHHHHHHhccCccccCCHHHHHHHHHHHHHhcC---C
Confidence            345444  88998877788889999999999986542 11111                12358999999999999   7


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHH
Q 017467          125 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSK  196 (371)
Q Consensus       125 ~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~r  196 (371)
                      +.+.|.||+.+|++.+++...--.|...-..|||-|||++..||.+-+        .+|||-|--+-|-. -+.++|.. 
T Consensus       108 tTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERklLqnkRLDLDAcKsRLK-KAKaae~q-  185 (375)
T KOG3725|consen  108 TTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERKLLQNKRLDLDACKSRLK-KAKAAELQ-  185 (375)
T ss_pred             CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhhcccChHHHHHHHH-Hhhhhhhh-
Confidence            889999999999999999999999999999999999999999998754        66776554432221 11112210 


Q ss_pred             HHHhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHhhHhhHhhHHHHHHHHHHHHHHHHH
Q 017467          197 RQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIE------AQQHRLTFQRLVAMVEGEKNYHLRIAA  269 (371)
Q Consensus       197 Rq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve------~qqqrlt~~~L~~~veae~~yhq~~~~  269 (371)
                         -+|.+. ..-  ..+.+||+.+.-.   -+++++.++-.---+|      +.+    +..|..||+++..|+.+|.+
T Consensus       186 ---~~rN~~~s~~--~~ie~aEqelRva---Q~EFDrQaEiTrLLLEGIsstH~nh----LrCL~dFVeaQmtyYAQcyq  253 (375)
T KOG3725|consen  186 ---TVRNSKTSGG--FTIEQAEQELRVA---QAEFDRQAEITRLLLEGISSTHNNH----LRCLRDFVEAQMTYYAQCYQ  253 (375)
T ss_pred             ---ccccccccCc--chHhHHHHHHHHH---HHHHhHHHHHHHHHHHhhhhhhhhH----HHHHHHHHHHHHHHHHHHHH
Confidence               012211 111  2444555433322   2233333332221112      111    56789999999999999999


Q ss_pred             HHHHhHHHHhhhhhcCCC-----CCCCCCCCC-----------C-----cccc---------cceEEEEecCCCCCCCCC
Q 017467          270 ILGDVEAEMVSEKQRKES-----APPVIPSEN-----------S-----SQKA---------VYFLAEAIHPFTAASEKE  319 (371)
Q Consensus       270 IL~~L~~~l~ser~r~es-----~~pp~~~~s-----------~-----s~~~---------~~~~arALydfea~~~~E  319 (371)
                      .+-+|+.++.+-.....+     ++.|.|+++           +     .+|.         ....++++|||++..+.|
T Consensus       254 ~MlDLQkqLg~fps~~~s~~~~~s~sp~ps~~pt~aaa~a~a~pSgl~i~~P~~ls~l~e~sgtrkArVlyDYdAa~s~E  333 (375)
T KOG3725|consen  254 LMLDLQKQLGGFPSFRGSSAILVSNSPDPSNGPTMAAAIAAAKPSGLLITSPDDLSDLKECSGTRKARVLYDYDAALSQE  333 (375)
T ss_pred             HHHHHHHHhcCCcccccccccccCCCCCCCCCchHHHHHhccCCcceeecCcchhhhHHhhccccceeeeecccccchhh
Confidence            999999987653211111     111222111           0     0111         234689999999999999


Q ss_pred             ccCCCCCEEEEEE--eCCCCeeEEEeCCeeeEecCCceeec
Q 017467          320 LSLGVGDYVVVRK--VSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       320 Lsf~~GDiI~Vl~--~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      |++-.+++|.|.+  -.|.+|..|+.+++.|-+|..|++.+
T Consensus       334 lslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  334 LSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             hhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            9999999999965  45778999999999999999999754

>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=4.2e-13  Score=136.39  Aligned_cols=169  Identities=19%  Similarity=0.257  Sum_probs=133.1

Q ss_pred             HHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 017467           70 LEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQ  146 (371)
Q Consensus        70 ~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~  146 (371)
                      ..++...-..++++|||   |..+|.|++....+-.|.+..+      |..+|.    +..-.      -..+..++..|
T Consensus        36 ~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~ei------y~p~~~----g~~~l------~~v~~~~d~l~   99 (460)
T KOG3771|consen   36 ERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEI------YEPDWP----GRDYL------QAVADNDDLLW   99 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcccc----cHHHH------HHHHHHHHHHH
Confidence            44555556789999999   9999999998876555553333      888886    43322      22456788899


Q ss_pred             HHHHHHHHhhhhhHHHHhhhcCh------hhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHH
Q 017467          147 EDFNRLLSSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARM  220 (371)
Q Consensus       147 ~~l~~~~~~~~~~PL~~~~~~~~------~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl  220 (371)
                      .+|+..|.+++++||..+...+|      +.++|+|. |||++||.++......       +    .+ ..|+..||+.|
T Consensus       100 ~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~-DyD~~r~~~~kvq~~k-------~----kd-~~k~~KAeeEl  166 (460)
T KOG3771|consen  100 KDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLV-DYDSARHSFEKLQAKK-------K----KD-EAKLAKAEEEL  166 (460)
T ss_pred             HHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhh-hhHHHHHHHHHHHHhc-------C----CC-hhhhHHHHHHH
Confidence            99999999999999999998886      35799999 9999999987765541       2    13 36888899999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHH
Q 017467          221 QELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAA  269 (371)
Q Consensus       221 ~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~  269 (371)
                      +..+..+..++.++..-|..+.+  .|+.+  .-+.+++-.+..||+....
T Consensus       167 ~~Aq~~fE~lN~~L~eELP~L~~--sRv~f~vp~Fqsl~~~q~vf~~Emsk  215 (460)
T KOG3771|consen  167 EKAQQVFEELNNELLEELPALYS--SRVGFFVPTFQSLFNLQLVFHKEMSK  215 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hhhhhhcchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988  66553  4577788889999988833

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=99.51  E-value=5.9e-12  Score=110.55  Aligned_cols=188  Identities=20%  Similarity=0.313  Sum_probs=150.3

Q ss_pred             hhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017467           80 TKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLD  159 (371)
Q Consensus        80 ~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~  159 (371)
                      .++.=+.|++.+++++..+.........|++.|.++|...+ ...+..++.++..+|++.+.++..++.+...+...|++
T Consensus         5 ~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~   83 (194)
T cd07307           5 LEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELP-DLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIE   83 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556666666666666666666789999999999987 22222499999999999999999999999999999999


Q ss_pred             HHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017467          160 PLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALA  239 (371)
Q Consensus       160 PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~  239 (371)
                      ||+.+..++++.. +..-.+|++.|.+++.....+.+-+.+.+     + ..++..+++++++.+..+..+..++...|.
T Consensus        84 pL~~~~~~~~~~~-~~~~k~~~~~~~~yd~~~~k~~~~~~~~~-----~-~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~  156 (194)
T cd07307          84 PLKEYLKKDLKEI-KKRRKKLDKARLDYDAAREKLKKLRKKKK-----D-SSKLAEAEEELQEAKEKYEELREELIEDLN  156 (194)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccC-----C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998776644 66666788888888777777654433321     1 368999999999999999999999999999


Q ss_pred             HHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467          240 AIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE  275 (371)
Q Consensus       240 ~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~  275 (371)
                      .+...........|..|++++..||.++.++++++.
T Consensus       157 ~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~  192 (194)
T cd07307         157 KLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL  192 (194)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            987755555578899999999999999999987764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>smart00721 BAR BAR domain

Probab=99.45  E-value=2.3e-11  Score=112.98  Aligned_cols=209  Identities=19%  Similarity=0.236  Sum_probs=139.8

Q ss_pred             HHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhh-chhhhhHHHHHHH------HHHhhcCcchhhhhhhHhHHHh
Q 017467           41 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTR-GTKDFQRDLVKVA------EVFTAIGYKHIEAGTKLSEDCC  113 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~vr~~------~~~~~~~~~q~E~~~~l~e~~~  113 (371)
                      .|.-.+|++     +-..+||.=    ..||+-+..++ ..++++|++-..+      ++...+...-.+   .+++.+.
T Consensus        12 ~~~ek~G~~-----e~T~~D~~f----~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~---~l~~~~~   79 (239)
T smart00721       12 KVGEKVGKA-----EKTKLDEDF----EELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSK---SLGEVYE   79 (239)
T ss_pred             HHHHHhCCC-----CcCcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHH---HHHHHhc
Confidence            566677722     334446653    23444444433 2345555533333      333332222223   3555555


Q ss_pred             h--hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhh
Q 017467          114 R--YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRM  183 (371)
Q Consensus       114 k--Yg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~  183 (371)
                      -  +|.+.+   .++.+|.++..+|+++..++..+..+ ..+..+|+.|+.+....+..+.        .++||  ||+.
T Consensus        80 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lD--yD~~  153 (239)
T smart00721       80 GGDDGEGLG---ADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLD--YDSA  153 (239)
T ss_pred             CCCCccccC---chhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHH--HHHH
Confidence            4  455555   67789999999999999999999999 9999999999999998887654        34443  4444


Q ss_pred             hhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHH
Q 017467          184 RQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNY  263 (371)
Q Consensus       184 Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~y  263 (371)
                      |..++...     +..+     .+.. .+|..|+++|+..++.+..++.++...|..+.+....+-+..|.+++.++..|
T Consensus       154 ~~kl~~~~-----~~~~-----~~~~-~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y  222 (239)
T smart00721      154 RHKLKKAK-----KSKE-----KKKD-EKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNF  222 (239)
T ss_pred             HHHHHHHH-----Hhcc-----CChh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence            44433221     1111     1221 38888999999999999999999999999887643333367899999999999


Q ss_pred             HHHHHHHHHHhHHHH
Q 017467          264 HLRIAAILGDVEAEM  278 (371)
Q Consensus       264 hq~~~~IL~~L~~~l  278 (371)
                      |.++.+++.+|...+
T Consensus       223 ~~~~~~~l~~l~~~l  237 (239)
T smart00721      223 HRESYKLLQQLQQQL  237 (239)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988765

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.45  E-value=1.3e-13  Score=100.64  Aligned_cols=49  Identities=37%  Similarity=0.626  Sum_probs=45.4

Q ss_pred             EecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcee
Q 017467          308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE  356 (371)
Q Consensus       308 ALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE  356 (371)
                      |+|+|.+..++||+|++||+|.|+...++|||.|+.+|+.||||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            6899999999999999999999999999999999999999999999986

...

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=99.43  E-value=5e-11  Score=108.26  Aligned_cols=215  Identities=19%  Similarity=0.325  Sum_probs=135.7

Q ss_pred             HHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHH---HHHHHhhcCcchhhhhhhHhHHHhhhhc
Q 017467           41 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVK---VAEVFTAIGYKHIEAGTKLSEDCCRYGA  117 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr---~~~~~~~~~~~q~E~~~~l~e~~~kYg~  117 (371)
                      .|...+|++     +...+|+.=-....++..+..   ..+++++++-+   .++.+...+.-.......||++|..+|.
T Consensus        11 ~~~~k~g~~-----~~t~~D~~f~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   82 (229)
T PF03114_consen   11 RVKQKLGKS-----EKTEIDEEFEELEEKFKQLEE---SIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGS   82 (229)
T ss_dssp             HHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCC-----CCCcCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhc
Confidence            666667622     233357642223344444433   34566666443   3444444433111222379999999999


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHH
Q 017467          118 ENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKR  197 (371)
Q Consensus       118 e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rR  197 (371)
                      +.+   .++.||.++..||+++..|+..+..+...+.+.|++||+.+. ...++...... .+++.|.+++.....+   
T Consensus        83 ~~~---~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~k-kr~~~~ldyd~~~~k~---  154 (229)
T PF03114_consen   83 EFS---DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIK-KREKKRLDYDSARSKL---  154 (229)
T ss_dssp             CTS---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHH---
T ss_pred             ccc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHH-HHHHHHHHHHHHHHHH---
Confidence            987   566799999999999999999999999999999999999999 66655422222 2333333333333333   


Q ss_pred             HHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017467          198 QQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE  277 (371)
Q Consensus       198 q~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~  277 (371)
                       .+.++.....  .+    ++++++.+..+..++......|+.+......+....|..+++++..||+++.++|.+|...
T Consensus       155 -~k~~~~~~~~--~~----~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~  227 (229)
T PF03114_consen  155 -EKLRKKKSKS--SK----EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQ  227 (229)
T ss_dssp             -HHCHTTSSBT--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHhhhccc--cc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             2222211111  01    4444444444444555588888887653333333779999999999999999999999876


Q ss_pred             H
Q 017467          278 M  278 (371)
Q Consensus       278 l  278 (371)
                      +
T Consensus       228 l  228 (229)
T PF03114_consen  228 L  228 (229)
T ss_dssp             H
T ss_pred             h
Confidence            5

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins

Probab=99.34  E-value=1.5e-10  Score=108.64  Aligned_cols=170  Identities=22%  Similarity=0.294  Sum_probs=139.0

Q ss_pred             chhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017467           79 GTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSS  155 (371)
Q Consensus        79 ~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~  155 (371)
                      +++.+|||   |..+|.|+..++..-.|....|      |+.+|.   .-+       ++..++..++..|.+|...+.+
T Consensus        27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~l------Y~p~~~---~~~-------~~~~v~e~~d~~~~~l~~~l~~   90 (211)
T cd07588          27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKEL------YEPDWP---GRE-------HLASIFEQLDLLWNDLEEKLSD   90 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCccc---cHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            57899998   8899999988888777776555      888874   112       3466788999999999999999


Q ss_pred             hhhhHHHHhhhcChh------hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHH
Q 017467          156 QVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAI  229 (371)
Q Consensus       156 ~~~~PL~~~~~~~~~------e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~  229 (371)
                      .|++||..++.-.|-      +++|+|. ||||.|+.++....       |.    ..| ..||.+||++|+..+..+..
T Consensus        91 ~Vl~Pl~~~~s~f~~i~k~I~KR~~Kll-DYDr~r~~~~kL~~-------K~----~kd-e~KL~kae~el~~Ak~~Ye~  157 (211)
T cd07588          91 QVLGPLTAYQSQFPEVKKRIAKRGRKLV-DYDSARHNLEALKA-------KK----KVD-DQKLTKAEEELQQAKKVYEE  157 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHH-hHHHHHHHHHHHHh-------cc----ccc-HhhHHHHHHHHHHHHHHHHH
Confidence            999999999987763      5699999 99999998765532       21    123 47999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467          230 LGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV  279 (371)
Q Consensus       230 lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~~L~~~l~  279 (371)
                      ++.++...|+.+.+  .|+.+  .-+.+++.+|..||.++..+..+|..-|.
T Consensus       158 lN~~L~~ELP~L~~--~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~  207 (211)
T cd07588         158 LNTELHEELPALYD--SRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMD  207 (211)
T ss_pred             HHHHHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998877  34332  45888999999999999999998887664

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th

>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2

Probab=99.31  E-value=2e-10  Score=107.67  Aligned_cols=178  Identities=13%  Similarity=0.199  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 017467           65 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH  141 (371)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~  141 (371)
                      .+.+.||.      +++.+|||   |..+|.|+......-.|.+..+      ||.+|+   ..+.+       ......
T Consensus        19 ~rf~~le~------~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~------Y~~~~~---~~~~~-------~~v~e~   76 (211)
T cd07612          19 MNLNMQQS------DGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDI------YEPDWD---GHEDL-------GAIVEG   76 (211)
T ss_pred             HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCcC---cccHH-------HHHHhc
Confidence            45555653      68999999   8999999999888777775555      999998   33333       344566


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHH
Q 017467          142 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA  215 (371)
Q Consensus       142 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~  215 (371)
                      ++..|.+++..+.+.||+||..+..-.|-      +++|.|. |||+.|+.++.....      + +    -| ..||..
T Consensus        77 ~d~~~~~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~Kll-DYD~~R~~~~kl~~k------~-~----kD-~~KL~k  143 (211)
T cd07612          77 EDLLWNDYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLV-DYDSARHHLEALQNA------K-K----KD-DAKIAK  143 (211)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhc------c-c----cc-HHHHHH
Confidence            77899999999999999999999988773      5699999 999999997665431      1 1    13 479999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467          216 AEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV  279 (371)
Q Consensus       216 Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~~L~~~l~  279 (371)
                      ||+.|+..+..+..++.++..-|+.+.+  .|+.+  .-+.+++..|..||.+...+...|..-|.
T Consensus       144 Ae~el~~Ak~~ye~lN~~L~~ELP~L~~--~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~  207 (211)
T cd07612         144 AEEEFNRAQVVFEDINRELREELPILYD--SRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMK  207 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887  56553  56889999999999999999888877653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.31  E-value=3.6e-12  Score=94.55  Aligned_cols=54  Identities=39%  Similarity=0.672  Sum_probs=48.6

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEE-EeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVR-KVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl-~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      .++|++||.+..+++|+|.+||+|.|+ ...+++||.|+.+|+.||||.+||+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            479999999999999999999999999 888889999999999999999999864

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.6e-09  Score=115.40  Aligned_cols=59  Identities=39%  Similarity=0.726  Sum_probs=53.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEE--eCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRK--VSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~--~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|.|++.+++|++|.+||+|.|..  ...+||..|+.+|+.||||+|||+.+...
T Consensus       693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~  753 (1118)
T KOG1029|consen  693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAV  753 (1118)
T ss_pred             eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccC
Confidence            567999999999999999999999999864  45889999999999999999999987543

>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II

Probab=99.24  E-value=1.3e-09  Score=102.18  Aligned_cols=178  Identities=17%  Similarity=0.240  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 017467           65 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH  141 (371)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~  141 (371)
                      .+.+.||+      +++.+|||   |..+|.|+.+....-.|.+..+      ||..|+ .  .+..    ...|   ..
T Consensus        19 rrf~~lE~------~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~------Y~p~~~-g--~~~~----~~~~---~~   76 (211)
T cd07611          19 QNFKRQET------EGTRLQRELRAYLAAIKGMQEASKKLTESLHEV------YEPDWY-G--RDDV----KTIG---EK   76 (211)
T ss_pred             HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCccc-c--cchH----HHHH---hh
Confidence            45566664      67899999   9999999999988888887766      999984 1  1211    1223   55


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHH
Q 017467          142 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA  215 (371)
Q Consensus       142 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~  215 (371)
                      +..+|.+|+..+..++++|+..++.-.|-      +++|.|. |||++|+.++....       |.    ..| ..||..
T Consensus        77 ~d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKll-DYD~~r~~~~kL~~-------k~----~kD-e~KL~k  143 (211)
T cd07611          77 CDLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLV-DYDSARHHLEALQT-------SK----RKD-EGRIAK  143 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhc-------cc----ccc-HHHHHH
Confidence            66799999999999999999999987763      5699999 99999998765542       21    124 589999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467          216 AEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV  279 (371)
Q Consensus       216 Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~~L~~~l~  279 (371)
                      ||+-|+..+..+..+|..+..-|+.+.+  .|+.+  ..+.+++..|..||.+...+-..|..-|.
T Consensus       144 Ae~el~~Ak~~ye~lN~~Lk~ELP~L~~--~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~  207 (211)
T cd07611         144 AEEEFQKAQKVFEEFNVDLQEELPSLWS--RRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMT  207 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887  55543  56889999999999999998877776553

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit

>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3

Probab=99.22  E-value=2.6e-09  Score=101.21  Aligned_cols=185  Identities=18%  Similarity=0.307  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 017467           65 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH  141 (371)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~  141 (371)
                      ++.+.||+      +++++|||   |+.+|.|+..+..|-.|.   |+++   |+.+.     +..+..+.-.|-.++..
T Consensus        18 ~rf~~lE~------~~~kL~Ke~K~Y~dav~~m~~a~~~is~~---l~~~---~~~~~-----~~~~~~~~e~y~~~~~~   80 (225)
T cd07590          18 QKLQQLES------TTKKLYKDMKKYIEAVLALSKAEQRLSQD---LASG---PLCED-----NDELRNLVEALDSVTTQ   80 (225)
T ss_pred             HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHhc---ccCCC-----ChHHHHHHHHHHHHHHH
Confidence            45555554      57899999   888888888777555555   4442   54332     23466677788889999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHH
Q 017467          142 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA  215 (371)
Q Consensus       142 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~  215 (371)
                      |.+....++..+...|++||..+..-+|.      +++|.|. |||++|+.++...       .|.+.+  + +..||.+
T Consensus        81 l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~-DYD~~r~~~~kl~-------~K~~k~--~-~~~KL~k  149 (225)
T cd07590          81 LDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQ-EYERLQAKVEKLA-------EKEKTG--P-NLAKLEQ  149 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH-------hCccCC--h-hHHHHHH
Confidence            99989999999999999999999998874      5688997 9999998876443       232211  1 1379999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467          216 AEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV  279 (371)
Q Consensus       216 Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~~L~~~l~  279 (371)
                      ||+.|+..+..+..++..+..-|+.+.+  .|+.+  .-+.+|+-.|+.||.....++.+|...+-
T Consensus       150 ae~el~~Ak~~ye~~N~~L~~ELP~l~~--~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d  213 (225)
T cd07590         150 AEKALAAARADFEKQNIKLLEELPKFYN--GRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLD  213 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH--HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999998877  34332  45888999999999999999999988754

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]

Probab=99.18  E-value=8.4e-12  Score=127.34  Aligned_cols=56  Identities=36%  Similarity=0.734  Sum_probs=53.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      -.++|-|.|.+.+.+||+|.+||+|+|+...+.|||+|..+|+.||||+|||.++.
T Consensus        18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK   73 (661)
T ss_pred             eEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence            35899999999999999999999999999999999999999999999999999864

>smart00326 SH3 Src homology 3 domains

Probab=99.10  E-value=2.1e-10  Score=82.74  Aligned_cols=54  Identities=39%  Similarity=0.588  Sum_probs=50.1

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCceee
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEK  357 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~-Gk~G~FPsnYVE~  357 (371)
                      ..++|+|+|.+..+++|+|.+||.|.|+...++|||.++.. |+.||||.+|++.
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence            45799999999999999999999999999888999999976 9999999999975

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=99.09  E-value=1.6e-10  Score=111.15  Aligned_cols=97  Identities=29%  Similarity=0.417  Sum_probs=69.7

Q ss_pred             HHHHHHHhHHHHhhhhhcCCCCCC--CCCCCCCc-cc---cc-ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCee
Q 017467          267 IAAILGDVEAEMVSEKQRKESAPP--VIPSENSS-QK---AV-YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS  339 (371)
Q Consensus       267 ~~~IL~~L~~~l~ser~r~es~~p--p~~~~s~s-~~---~~-~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWw  339 (371)
                      -..|...|...+-..-.+..+++.  ++|+.... ++   .. ...+.+-|.|.++.++||++.+|+.|.|.+++.+|||
T Consensus        64 ~~si~knlkd~~g~kt~~k~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWW  143 (379)
T KOG4226|consen   64 KGSIVKNLKDTLGLKTRRKTSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWW  143 (379)
T ss_pred             hhHHHHhhhhccccccccCCCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcce
Confidence            445777777776663333333332  22222111 11   01 1137888999999999999999999999999999999


Q ss_pred             EEEeCCeeeEecCCceeeccCCCC
Q 017467          340 EGECKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       340 eGe~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      .|..+|..||||+|||++....+.
T Consensus       144 rG~~ng~VGWFPSNYv~E~~ds~~  167 (379)
T KOG4226|consen  144 RGSYNGQVGWFPSNYVTEEVDSAA  167 (379)
T ss_pred             ecccCCeeccccccceehhccccc
Confidence            999999999999999998766543

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.06  E-value=2.5e-10  Score=82.34  Aligned_cols=46  Identities=39%  Similarity=0.666  Sum_probs=42.1

Q ss_pred             EEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC--CeeeEecC
Q 017467          307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPS  352 (371)
Q Consensus       307 rALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~--Gk~G~FPs  352 (371)
                      +|+|+|.+..++||+|.+||.|.|++..+++||.++..  |+.||||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            58999999999999999999999999999999999973  79999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=99.05  E-value=1.3e-10  Score=123.13  Aligned_cols=55  Identities=33%  Similarity=0.584  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceee
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  357 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~  357 (371)
                      .+.|.|+|||.+++.+||+|++||+|.++.+.++|||.|..+|+.||||.+||++
T Consensus      1051 ~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1051 NPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             CcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence            3689999999999999999999999999999999999999999999999999975

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.03  E-value=5.7e-10  Score=79.63  Aligned_cols=51  Identities=41%  Similarity=0.624  Sum_probs=47.5

Q ss_pred             EEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCC-eeeEecCCcee
Q 017467          306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG-KAGWFPSANVE  356 (371)
Q Consensus       306 arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~G-k~G~FPsnYVE  356 (371)
                      ++|+|+|.+..+++|+|.+||.+.|++..++|||.++..+ +.||||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6899999999999999999999999998889999999765 99999999986

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=99.02  E-value=1.3e-10  Score=116.27  Aligned_cols=57  Identities=33%  Similarity=0.445  Sum_probs=53.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ...+||||||++..++||+|+.||+|+|+...+++||.|++.+..|+||+|||....
T Consensus       215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence            346899999999999999999999999999999999999999999999999998754

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=3.7e-10  Score=120.07  Aligned_cols=54  Identities=35%  Similarity=0.563  Sum_probs=51.0

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      .+.++|||.+++++||+|++||+|.|+.+.++.||.|+++|..|+||+|||...
T Consensus      1055 qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1055 QVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred             eeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence            467999999999999999999999999999999999999999999999999654

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=98.95  E-value=8.9e-10  Score=111.44  Aligned_cols=56  Identities=36%  Similarity=0.587  Sum_probs=54.3

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      .++|+|+|.++...||.|.+||+|.|+.++|.+|++|+.+|+.|+||++||+.+.+
T Consensus       232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP  287 (489)
T ss_pred             hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence            48999999999999999999999999999999999999999999999999999877

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=98.93  E-value=1.6e-07  Score=88.58  Aligned_cols=189  Identities=16%  Similarity=0.211  Sum_probs=128.4

Q ss_pred             HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467           87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus        87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +++++.+++.+|.-.++.-..+++...+.|.... ..++...|.++..|+.+.+.|++.++.|-.++...++.||.++..
T Consensus        21 l~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~-~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k   99 (215)
T cd07604          21 LKKAVKAIHNSGLAHVENELQFAEALEKLGSKAL-SREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLK   99 (215)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777888888888888888999999998764 223335899999999999999999999999999999999999999


Q ss_pred             cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHh-hccC--CCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017467          167 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR-VREA--PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA  243 (371)
Q Consensus       167 ~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K-~re~--~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~  243 (371)
                      +|+...-+-+...|||-+..+|....-+++.+.+ .++.  .++|  .-...|.+-++..+..+-..--+-...++.++.
T Consensus       100 ~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e--~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~  177 (215)
T cd07604         100 GDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTE--ITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKT  177 (215)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9886542366667778777766554433332221 1110  0122  011223444444444432222223444555555


Q ss_pred             HhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467          244 QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  278 (371)
Q Consensus       244 qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l  278 (371)
                      .+..=-++.|+.+++|+..|+++..++++++..-+
T Consensus       178 kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~  212 (215)
T cd07604         178 KKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI  212 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33332368899999999999999999999987654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=98.88  E-value=3.9e-09  Score=109.91  Aligned_cols=60  Identities=40%  Similarity=0.600  Sum_probs=51.7

Q ss_pred             cccceEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeecc
Q 017467          300 KAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       300 ~~~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      +.....+.+-|||.+.+-.||||++||+|.+....  +.|||.|+.+|+.||||++||++-.
T Consensus       802 ~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  802 PKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             cceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence            33455678889999999999999999999998654  5699999999999999999998754

>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1

Probab=98.77  E-value=1.2e-06  Score=81.90  Aligned_cols=178  Identities=12%  Similarity=0.180  Sum_probs=127.2

Q ss_pred             HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467           87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus        87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +|+.+.+++.+|.-..-.-..++..+..+|.+..   ++...|.++..|+.+++.|++.+..|..++..-+++||..++.
T Consensus        21 l~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~---~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k   97 (200)
T cd07639          21 LVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP---KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVK   97 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555566655555555566777788887543   6667999999999999999999999999999999999999999


Q ss_pred             cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 017467          167 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQH  246 (371)
Q Consensus       167 ~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqq  246 (371)
                      .|+.. .+-....|||....++.-..-..+ ..|.    .|   .+++.|++-|.-.++.+...-=+....++.++..-.
T Consensus        98 ~dl~~-vKe~kK~FdK~s~~~d~al~K~~~-~~k~----k~---~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKk  168 (200)
T cd07639          98 EDLRG-FRDARKEFERGAESLEAALQHNAE-TPRR----KA---QEVEEAAAALLGARATFRDRALDYALQINVIEDKKK  168 (200)
T ss_pred             hhhHH-HHHHhhhHhhcchhHHHHHHHHhh-cccc----ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88864 456666788877777554222111 0111    12   377888888888888765444445555555544111


Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467          247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEA  276 (371)
Q Consensus       247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~  276 (371)
                      ---+..|.++++|+.+|+.+-.+++++|..
T Consensus       169 fefle~ll~~m~a~~tfF~qG~ell~~l~~  198 (200)
T cd07639         169 FDILEFMLQLMEAQASFFQQGHEALSALHQ  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            111578999999999999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)

Probab=98.76  E-value=1.1e-06  Score=82.32  Aligned_cols=183  Identities=15%  Similarity=0.200  Sum_probs=133.5

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCch----hHHHHHHHHHHHHH
Q 017467           67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL----PKAAAIYGDARKHV  142 (371)
Q Consensus        67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l----~~A~~~~g~a~~~~  142 (371)
                      ...|+|||.+.+..-.-++++..+...              ++..+..||.. +   +|...    |.++..|+.+++.|
T Consensus        14 ~~~~~Kl~K~~~~~~~a~~~~~~a~~~--------------Fa~~L~~f~~~-~---dD~~~~a~gg~~l~kF~~~l~ei   75 (202)
T cd07606          14 RDRSLKLYKGCRKYRDALGEAYDGDSA--------------FAESLEEFGGG-H---DDPISVAVGGPVMTKFTSALREI   75 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhcCC-C---CChHHHhccchHHHHHHHHHHHH
Confidence            457888887777665555655555444              45555666632 2   44333    24799999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHH
Q 017467          143 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQE  222 (371)
Q Consensus       143 ~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~e  222 (371)
                      ...++.|...+..-+++||+.++..|+.+. +-+...|||-+.++++-..-...-..+.|    +   .+++.|++.+.-
T Consensus        76 ~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~v-Ke~kK~FdK~s~~yd~al~K~~~l~k~~k----~---~~~~ea~~~l~~  147 (202)
T cd07606          76 GSYKEVLRSQVEHMLNDRLAQFADTDLQEV-KDARRRFDKASLDYEQARSKFLSLTKDAK----P---EILAAAEEDLGT  147 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccCc----h---HHHHHHHHHHHH
Confidence            999999999999999999999999998864 56777888877777665444332221221    2   377889999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467          223 LKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE  275 (371)
Q Consensus       223 lk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~  275 (371)
                      .+..+-...-+...+++.++..-.---+..|+++++|+.+|+++-.+++.++.
T Consensus       148 ~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~  200 (202)
T cd07606         148 TRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLE  200 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99987777777777777666522212267899999999999999999998864

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=98.75  E-value=4.2e-09  Score=106.61  Aligned_cols=56  Identities=32%  Similarity=0.523  Sum_probs=51.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEe--CCCCeeEEEeCCeeeEecCCceeecc
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~--~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      .+|+++|.|++++++||+|++||+|.++.+  ++.|||+|+.+|+.|.||-|||+.+.
T Consensus       262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence            479999999999999999999999987754  36799999999999999999998765

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=98.75  E-value=1.9e-09  Score=109.00  Aligned_cols=59  Identities=27%  Similarity=0.482  Sum_probs=55.1

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ....|.++|.|.+++++||.|+.||+|.|+....+|||.|..+|+.|+||+|||.++..
T Consensus        99 ~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~  157 (627)
T KOG4348|consen   99 QARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT  157 (627)
T ss_pred             cceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence            34579999999999999999999999999999999999999999999999999998754

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins

Probab=98.73  E-value=1.4e-06  Score=81.30  Aligned_cols=180  Identities=9%  Similarity=0.153  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 017467           85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM  164 (371)
Q Consensus        85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~  164 (371)
                      +.+|+++.+++.+|.-....-..++.....+|.+.   .++...+.++..||.+++.|...+..|...+...+++||+++
T Consensus        19 ~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~---~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F   95 (200)
T cd07603          19 EKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYF---RDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNF   95 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778888887777777778888888888864   367788999999999999999999999999999999999999


Q ss_pred             hhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017467          165 ITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ  244 (371)
Q Consensus       165 ~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~q  244 (371)
                      +.+|+... +-+...|++-...+++-..-. -.+.|.    +|   ..++.|+.-|...+..+-..--+....++.++..
T Consensus        96 ~k~dL~~v-KE~kk~Fdk~s~~yd~al~k~-~~~~K~----K~---~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~k  166 (200)
T cd07603          96 VKEDIKKV-KESKKHFEKISDDLDNALVKN-AQAPRS----KP---QEAEEATNILTATRSCFRHTALDYVLQINVLQAK  166 (200)
T ss_pred             HHHhhHHH-HHHHHHHHHHHHHHHHHHHHH-hccCCC----CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888753 444445555544443322211 011122    22   3777788888888888655555555556555542


Q ss_pred             hhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467          245 QHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  276 (371)
Q Consensus       245 qqrlt~~~L~~~veae~~yhq~~~~IL~~L~~  276 (371)
                      -.---++.|+++++|+.+|+.+-.++++++..
T Consensus       167 Kk~e~le~ll~~~~A~~tff~qG~el~~dl~p  198 (200)
T cd07603         167 KRHEILSTLLSYMHAQFTFFHQGYDLLEDLEP  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence            11122678999999999999999999988753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.73  E-value=1.1e-06  Score=87.92  Aligned_cols=55  Identities=25%  Similarity=0.477  Sum_probs=49.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEeC-CeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECK-GKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~~-Gk~G~FPsnYVE~i  358 (371)
                      ..++|||||.+...+||+|+.||.+..+... .-||+.|+.+ |+.|+||+|||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            4689999999999999999999999877544 5599999986 99999999999865

>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]

Probab=98.70  E-value=1.3e-09  Score=113.88  Aligned_cols=87  Identities=34%  Similarity=0.505  Sum_probs=71.8

Q ss_pred             hHHHHhhhhhcCCCCCCCCCCCC----CcccccceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCee
Q 017467          274 VEAEMVSEKQRKESAPPVIPSEN----SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKA  347 (371)
Q Consensus       274 L~~~l~ser~r~es~~pp~~~~s----~s~~~~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~  347 (371)
                      |....+++++||.++..|.+...    .....+++++.++..|.+..++||++..+|++.|+.+.++||++|+.  +|..
T Consensus       575 L~a~s~Sd~~RWi~Al~p~~~~~~~~~i~e~~dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~  654 (695)
T KOG3523|consen  575 LSAESQSDRQRWISALRPPSSTKPPEKIYEEWDCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGER  654 (695)
T ss_pred             ecCCchHHHHHHHHhcCCCCCCCChhhhhhccCCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCcc
Confidence            34445678899999876533222    12456788999999999999999999999999999999999999995  8999


Q ss_pred             eEecCCceeeccC
Q 017467          348 GWFPSANVEKRQR  360 (371)
Q Consensus       348 G~FPsnYVE~i~~  360 (371)
                      ||||..|+++|..
T Consensus       655 GWFP~~~veeI~~  667 (695)
T KOG3523|consen  655 GWFPSSYVEEITN  667 (695)
T ss_pred             CcchHHHHHHhcC
Confidence            9999999998754

>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=98.69  E-value=1e-06  Score=86.48  Aligned_cols=154  Identities=16%  Similarity=0.281  Sum_probs=103.5

Q ss_pred             HhHHHhhhh---ccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhh
Q 017467          108 LSEDCCRYG---AENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRM  183 (371)
Q Consensus       108 l~e~~~kYg---~e~~~-~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~  183 (371)
                      |+..+....   .++.. ..+.++|+.||..|+.++..|++.|-.+|..+.++|..||++....+.... .       ++
T Consensus       126 LSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a-~-------k~  197 (289)
T PF10455_consen  126 LSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKA-N-------KA  197 (289)
T ss_pred             HHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HH
Confidence            555555555   44410 224578999999999999999999999999999999999999888666543 2       33


Q ss_pred             hhHHHHHHHHHHHHHHhhccCCCccc----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHH
Q 017467          184 RQEAETQAVEVSKRQQRVREAPNPEN----VAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEG  259 (371)
Q Consensus       184 Rq~~e~~~~ev~rRq~K~re~~~~d~----~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~vea  259 (371)
                      |+.++.-+.+.+-=+.+.+...+|+.    -.+|..||..|-...+.       |..-|..|-+.-.-  +..|..|+.|
T Consensus       198 RkkV~~sRL~~D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~aTee-------Av~~Mk~vl~~~e~--l~~Lk~lv~A  268 (289)
T PF10455_consen  198 RKKVENSRLQFDAARANLKNKAKPEKEEQLRVELEQAEDEFVSATEE-------AVEVMKEVLDNSEP--LRLLKELVKA  268 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCcccCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcch--HHHHHHHHHH
Confidence            44444443333322222211012332    23466677766655554       77788876442222  5778999999


Q ss_pred             HHHHHHHHHHHHHHhHHHH
Q 017467          260 EKNYHLRIAAILGDVEAEM  278 (371)
Q Consensus       260 e~~yhq~~~~IL~~L~~~l  278 (371)
                      |+.||+.++++|..+-..+
T Consensus       269 Ql~Yhk~aae~L~~~~~~l  287 (289)
T PF10455_consen  269 QLEYHKKAAEALSELLKSL  287 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999876654

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].

>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins

Probab=98.69  E-value=3.8e-06  Score=79.58  Aligned_cols=177  Identities=15%  Similarity=0.220  Sum_probs=126.5

Q ss_pred             hchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 017467           78 RGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVE-KEQEDFNRLL  153 (371)
Q Consensus        78 ~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~-~~~~~l~~~~  153 (371)
                      .+++.+||+   +..++.++..+...-.|...-+      |+..++   .+  .-.+.-.|..++..|. +....++..+
T Consensus        25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~l------Y~p~~~---~~--~~~~~~~y~~~v~~l~~~~~~el~~~~   93 (224)
T cd07591          25 KASTKLQKEAKGYLDSLRALTSSQARIAETISSF------YGDAGD---KD--GAMLSQEYKQAVEELDAETVKELDGPY   93 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCC---cc--HhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            467889988   5556666655544444443333      888886   21  1123345666666665 4566677778


Q ss_pred             HhhhhhHHHHhhhcCh------hhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 017467          154 SSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM  227 (371)
Q Consensus       154 ~~~~~~PL~~~~~~~~------~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m  227 (371)
                      .+.|++|+..+..-.+      ++++++|. |||+.|+.++...       .|..    .+ ..+|..||++|++.+..+
T Consensus        94 ~~~V~~Pl~~~~~~~~~i~k~IkKR~~Kll-DYD~~~~k~~kl~-------~K~~----kd-~~kL~kae~el~~a~~~Y  160 (224)
T cd07591          94 RQTVLDPIGRFNSYFPEINEAIKKRNHKLL-DYDAARAKVRKLI-------DKPS----ED-PTKLPRAEKELDEAKEVY  160 (224)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhhHh-hHHHHHHHHHHHH-------hccc----CC-HHHHHHHHHHHHHHHHHH
Confidence            9999999999987664      35688888 9999988876433       2221    13 379999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467          228 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  278 (371)
Q Consensus       228 ~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l  278 (371)
                      ..++..+..-|+.+-+-.-.+-..-+.+++..+..||.+....|..+....
T Consensus       161 e~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~  211 (224)
T cd07591         161 ETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYL  211 (224)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999876622223234577899999999999999888877654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like

Probab=98.66  E-value=3.7e-06  Score=78.92  Aligned_cols=188  Identities=12%  Similarity=0.133  Sum_probs=128.6

Q ss_pred             hhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC--CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017467           80 TKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQ  156 (371)
Q Consensus        80 ~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~--~~~~~-~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~  156 (371)
                      ++.|=++||+.+.+++.+|.--.=+...++.+...+|.+...  .+++. ..+.++..|+..++.|++.+..|-.++..-
T Consensus        14 t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~   93 (207)
T cd07634          14 TNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDV   93 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677777777777666555555677777777755320  01221 589999999999999999999999999999


Q ss_pred             hhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017467          157 VLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAA  236 (371)
Q Consensus       157 ~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~  236 (371)
                      ++.||..++..|+.. .+-....|||-...+++...-- ....+.+   + +  ..++.|++-|.-.++.+-..-=+...
T Consensus        94 l~~pL~~f~k~dl~~-vKe~kK~FDK~se~y~~aleK~-l~l~~~k---k-~--~~~~ea~~~l~~~R~~F~~~~ldYv~  165 (207)
T cd07634          94 LIAPLEKFRKEQIGA-AKDGKKKFDKESEKYYSILEKH-LNLSAKK---K-E--SHLQRADTQIDREHQNFYEASLEYVF  165 (207)
T ss_pred             HHHHHHHHHHHHHHH-HHHHccchhHHHhHHHHHHHHH-HhccccC---C-c--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988864 3556667777666664422111 1111111   1 2  37788888888888875444444444


Q ss_pred             HHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467          237 ALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE  275 (371)
Q Consensus       237 am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~  275 (371)
                      .++.|+....---++.|+++++|+.+|+.+..++++++.
T Consensus       166 ~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~  204 (207)
T cd07634         166 KIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFA  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            454454421111157899999999999999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=98.65  E-value=1.5e-08  Score=102.62  Aligned_cols=53  Identities=32%  Similarity=0.520  Sum_probs=50.5

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEE--EeCCeeeEecCCceee
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEG--ECKGKAGWFPSANVEK  357 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweG--e~~Gk~G~FPsnYVE~  357 (371)
                      .++|||.|.+++++||.|.+||+|.|++++|+||+.|  +++|+.|.||.|||+.
T Consensus       434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             cceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence            4899999999999999999999999999999999999  5899999999999974

>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins

Probab=98.57  E-value=7.7e-06  Score=76.83  Aligned_cols=182  Identities=12%  Similarity=0.174  Sum_probs=122.2

Q ss_pred             HHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC--CCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 017467           86 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINE-NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLR  162 (371)
Q Consensus        86 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~--~~~~-~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~  162 (371)
                      .+|+...+++.+|.-..=+-..++++..-|+-+-..  .++| -..+.++-.||.++..|++.++-|...+...++.||.
T Consensus        20 kLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~   99 (207)
T cd07602          20 ELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLE   99 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555544444444555556666644210  0122 2478999999999999999999999999999999999


Q ss_pred             HhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017467          163 AMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIE  242 (371)
Q Consensus       163 ~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve  242 (371)
                      .+...++.+ .+-....|+|-....+....-.. +..|.|    .+  .+++.|++-|.-.++..-..--+-..+++.|+
T Consensus       100 ~F~k~dl~~-~ke~kk~FdK~se~~~~al~k~~-~lsk~k----k~--~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq  171 (207)
T cd07602         100 KFRKEQIGG-AKEEKKKFDKETEKFCSSLEKHL-NLSTKK----KE--NQLQEADAQLDMERRNFHQASLEYVFKLQEVQ  171 (207)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-ccCCCC----Cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999977754 35566677776666544333221 111211    12  37777898888888886665555666666665


Q ss_pred             HHhhHhh-HhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467          243 AQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVEA  276 (371)
Q Consensus       243 ~qqqrlt-~~~L~~~veae~~yhq~~~~IL~~L~~  276 (371)
                      .. .+.. +..|+++++|+.+|+.+..+++.++..
T Consensus       172 ~r-Kkfefle~ll~~m~a~~tff~qG~el~~d~~p  205 (207)
T cd07602         172 ER-KKFEFVETLLSFMYGWLTFYHQGHEVAKDFKP  205 (207)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence            52 1221 567999999999999999999988753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2

Probab=98.53  E-value=1.5e-05  Score=75.15  Aligned_cols=184  Identities=10%  Similarity=0.187  Sum_probs=117.5

Q ss_pred             HHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh
Q 017467           90 VAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP  169 (371)
Q Consensus        90 ~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~  169 (371)
                      .|+++..+|.-+++.-.-+++.+.+.|.--- |.++...|.+++.||.+.+.|.+..+.|..++..-+.-||.+++.+|+
T Consensus        24 ~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l-~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dL  102 (215)
T cd07642          24 SVKAIHTSGLAHVENEEQYTQALEKFGSNCV-CRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDL  102 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3445555665555555556666666666311 235678999999999999999999999999999999999999999888


Q ss_pred             hhhhh-hhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHH-HHHHHHHHHHHHHHhhHHHHH---HHHHHHHH
Q 017467          170 LEDAR-HLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA-AEARMQELKANMAILGKEAAA---ALAAIEAQ  244 (371)
Q Consensus       170 ~e~~R-~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~-Ae~Kl~elk~~m~~lgkea~~---am~~ve~q  244 (371)
                      +.. | -+...|||.|..+|+...-.++-..|   ..++......+. .++--+++......+..+|..   -++.+...
T Consensus       103 r~v-K~d~KK~fdK~~~dyE~~~~k~ek~~r~---~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~k  178 (215)
T cd07642         103 KGV-KGDLKKPFDKAWKDYETKVTKIEKEKKE---HAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIK  178 (215)
T ss_pred             HHh-HHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            654 3 45667888888888776532221111   001221110000 011112222223333444444   23344443


Q ss_pred             hhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467          245 QHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  278 (371)
Q Consensus       245 qqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l  278 (371)
                      +..=-+++++.+..|+..|+++..+.+++|..-+
T Consensus       179 k~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~  212 (215)
T cd07642         179 KGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI  212 (215)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333368899999999999999999999988755

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3

Probab=98.52  E-value=1.5e-05  Score=74.58  Aligned_cols=183  Identities=9%  Similarity=0.202  Sum_probs=126.6

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467           68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  147 (371)
Q Consensus        68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~  147 (371)
                      .+|+||...-++.-..=|.++.+.++              ++.....++.+.   ..|...+.+|-.||++++.|...+.
T Consensus        16 ~~l~kl~K~~~~~~d~g~~~~~a~~~--------------F~~~l~d~~~~~---~gd~~i~~~L~kF~~~l~ei~~~~~   78 (200)
T cd07637          16 AKLDKLVKLCSGMIEAGKAYATTNKL--------------FVSGIRDLSQQC---KKDEMISECLDKFGDSLQEMVNYHM   78 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence            67888876665444433444444333              344444444442   3566789999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 017467          148 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM  227 (371)
Q Consensus       148 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m  227 (371)
                      .|...+..-+++||+.++..|+.+. +-+...|++...+++.-..-..  +.|.+   +|   .+++.|...|.+.+..+
T Consensus        79 ~l~~q~e~~l~~pL~~F~k~dL~~~-KE~rK~Fdk~se~yd~al~k~~--~~k~k---k~---~~l~Ea~~~L~~~Rk~f  149 (200)
T cd07637          79 ILFDQAQRSVRQQLHSFVKEDVRKF-KETKKQFDKVREDLEIALVKNA--QAPRH---KP---HEVEEATSTLTITRKCF  149 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHh--hcCCC---Ch---HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998753 4445566666666543333211  12211   12   47788899999999887


Q ss_pred             HHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467          228 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA  276 (371)
Q Consensus       228 ~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~  276 (371)
                      -..--+....++.++..-.=--+..|+++++|+.+|+.+-.++++++..
T Consensus       150 ~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~p  198 (200)
T cd07637         150 RHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDP  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence            6666666666666655211111578999999999999999999998753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.47  E-value=6.7e-08  Score=103.84  Aligned_cols=60  Identities=27%  Similarity=0.479  Sum_probs=54.4

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCe-eeEecCCceeeccCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK-AGWFPSANVEKRQRI  361 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk-~G~FPsnYVE~i~~l  361 (371)
                      ....|+|||||.+..++||+|.+|-+|+++++.+.|||.|..+|. .+|||+|||+++.+.
T Consensus       773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             cchhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence            346799999999999999999999999999999999999999865 699999999998764

>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]

Probab=98.42  E-value=1.1e-07  Score=96.16  Aligned_cols=55  Identities=36%  Similarity=0.537  Sum_probs=52.1

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      .++++|||.+..++||+|.+|-+|.|+++.++|||+|.++|..|+||.|||+.+.
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            4789999999999999999999999999999999999999999999999998764

>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase

Probab=98.38  E-value=5.3e-05  Score=71.25  Aligned_cols=187  Identities=12%  Similarity=0.178  Sum_probs=131.5

Q ss_pred             hhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC--CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017467           81 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQV  157 (371)
Q Consensus        81 ~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~--~~~~~-~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~  157 (371)
                      +++=+.+|+...+++.+|.-..=.-..++.+..-|+-+-..  .++|. ..+.++-.|+.+++.|++.+.-|......-+
T Consensus        15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l   94 (207)
T cd07636          15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVL   94 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667888888888888776666666788888888854210  11222 2678999999999999999999999999999


Q ss_pred             hhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017467          158 LDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAA  237 (371)
Q Consensus       158 ~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~a  237 (371)
                      +.||..+...++.. .+--...|||-...+++-..-...=..|.|     +  .+++.|++-|...++.+-...-+-...
T Consensus        95 ~~~L~~F~kedi~~-~Ke~kK~FdK~se~~~~al~k~~~ls~k~K-----~--~~~eEA~~~L~~~r~~F~~~sLdYV~q  166 (207)
T cd07636          95 ITPLEKFRKEQIGA-AKEAKKKYDKETEKYCAVLEKHLNLSSKKK-----E--SQLHEADSQVDLVRQHFYEVSLEYVFK  166 (207)
T ss_pred             HHHHHHHHHHHHHH-HHHHhhhHhhhhhHHHHHHHHHhcCcccCC-----c--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999877653 344555677766666443322211001111     2  388899999999998865554455555


Q ss_pred             HHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467          238 LAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE  275 (371)
Q Consensus       238 m~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~  275 (371)
                      ++.|++.-.---+..|+++++|..+|+.+..+++.++.
T Consensus       167 i~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~  204 (207)
T cd07636         167 VQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            55554421111156799999999999999999998864

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o

>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins

Probab=98.37  E-value=9.7e-05  Score=69.87  Aligned_cols=188  Identities=11%  Similarity=0.188  Sum_probs=123.8

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhcc-CCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 017467           68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAE-NNQNINENILPKAAAIYGDARKHVEKEQ  146 (371)
Q Consensus        68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e-~~~~~~~~~l~~A~~~~g~a~~~~~~~~  146 (371)
                      ..++||+.--++.-+-+|++..+...|              +....-|+.. .++|++|...+.++..|+.+++.|+..+
T Consensus        16 ~~~~kL~K~c~~~~~a~~~~~~A~~~F--------------~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~   81 (215)
T cd07601          16 SYMNQLLQACKRVYDAQNELKSATQAL--------------SKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMH   81 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555445555555554444              4444445432 1113467777889999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHH-HHHHHHHHHHHH
Q 017467          147 EDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKL-HAAEARMQELKA  225 (371)
Q Consensus       147 ~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl-~~Ae~Kl~elk~  225 (371)
                      ..|...+..-++.||..++.+|+.+. +-+...|||-...+++-..-..+ ..|.|    +.  +++ +.|++-+...+.
T Consensus        82 ~~L~~q~~~~l~~pL~~F~k~Dl~~v-Ke~kK~FdK~s~~~d~al~K~~~-l~k~k----~~--~~~~~Ea~~~l~~~R~  153 (215)
T cd07601          82 STLSSQLADTVLHPISQFMESDLAEI-MTLKELFKAASNDHDGVLSKYSR-LSKKR----EN--TKVKIEVNDEVYACRK  153 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHhHHHHHHHHHHhh-CCcCC----Cc--hHHHHHHHHHHHHHHH
Confidence            99999999999999999999999764 56666778876666653333321 11111    11  122 357777777777


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHHHHHHHHHHH-HhHHHH
Q 017467          226 NMAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILG-DVEAEM  278 (371)
Q Consensus       226 ~m~~lgkea~~am~~ve~qqqrlt-~~~L~~~veae~~yhq~~~~IL~-~L~~~l  278 (371)
                      ..-..--+-..+++.++.. .+.. +..|+++++|+.+|+.+-.+++. ++..-+
T Consensus       154 ~F~~~~ldYv~~ln~iq~k-Kk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~  207 (215)
T cd07601         154 KQHQTAMNYYCALNLLQYK-KTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFL  207 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7555544555556655541 1111 57899999999999999999997 766544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2

Probab=98.36  E-value=0.00012  Score=68.47  Aligned_cols=182  Identities=9%  Similarity=0.215  Sum_probs=131.1

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467           68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  147 (371)
Q Consensus        68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~  147 (371)
                      .+|+||+..-+..-+.+++++.+.+.|+.       +.+-+    .+||+      ++...|.++-.|+.++..|++.+.
T Consensus        16 ~~l~Kl~K~~~~~~dag~~~~~a~~~F~~-------~l~d~----~~~~~------~De~i~~~l~kF~~~l~ei~~~~~   78 (200)
T cd07638          16 LKLDKLVKLCIGMIDAGKAFCQANKQFMN-------GIRDL----AQYSS------KDAVIETSLTKFSDTLQEMINYHT   78 (200)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHH----HHhCC------cchhhHHHHHHHHHHHHHHHHHHH
Confidence            67899999998888888888887777753       21112    23443      355788999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 017467          148 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM  227 (371)
Q Consensus       148 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m  227 (371)
                      -|...+..-+++||..++..|+.+ .+-....|+|...+.+.-..-. -|..|.|     +  .+++.|.+-+...++..
T Consensus        79 ~L~~q~~~~l~~~L~~F~k~dl~~-vke~kk~FdK~s~~~~~aL~K~-~~~~k~k-----~--~e~eEa~~~l~~~r~~F  149 (200)
T cd07638          79 ILFDQAQRSIKAQLQTFVKEDLRK-FKDAKKQFDKVSEEKENALVKN-AQVQRNK-----Q--HEVEEATNILTATRKCF  149 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHh-ccCCcCc-----h--HHHHHHHHHHHHHHHHH
Confidence            999999999999999999988865 3666667777655442222111 0111211     2  36777888888888886


Q ss_pred             HHhhHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467          228 AILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVEA  276 (371)
Q Consensus       228 ~~lgkea~~am~~ve~qqqrlt-~~~L~~~veae~~yhq~~~~IL~~L~~  276 (371)
                      -..--+...+++.++.. .+.. +..|.++++|+.+|+.+-.+++.++..
T Consensus       150 ~~~~ldYv~~ln~vq~k-Kkfe~le~ll~~m~a~~tff~qG~el~~d~~p  198 (200)
T cd07638         150 RHIALDYVLQINVLQSK-RRSEILKSMLSFMYAHLTFFHQGYDLFSELGP  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            66666666666666552 1221 567999999999999999999998753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2

Probab=98.35  E-value=8.2e-05  Score=69.97  Aligned_cols=183  Identities=11%  Similarity=0.163  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC--CCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 017467           85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINE-NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPL  161 (371)
Q Consensus        85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~--~~~~-~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL  161 (371)
                      +.+|+...+++.+|.--.=+...++.+..-++-+-..  .+++ ...|..+..|+.++..+++.++-|..++...++.||
T Consensus        19 ~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL   98 (207)
T cd07635          19 KELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLIKPL   98 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555444443333444444444422110  1122 234799999999999999999999999999999999


Q ss_pred             HHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017467          162 RAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI  241 (371)
Q Consensus       162 ~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v  241 (371)
                      ..+...|+.+ .+-....|+|-..+.++-..-..+=..|.|     +  .+++.|++-|.-.+...-...-+-...++.+
T Consensus        99 ~~F~kedl~~-~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk-----~--~e~~EA~~~l~~~r~~F~~~sLdYv~qin~l  170 (207)
T cd07635          99 ERFRKEQLGA-VKEEKKKFDKETEKNYSLLEKHLNLSAKKK-----E--PQLQEADVQVEQNRQHFYELSLEYVCKLQEI  170 (207)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHhccCCCC-----c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988864 466667888877776554443322222322     2  2666788888888887544444455555555


Q ss_pred             HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467          242 EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE  275 (371)
Q Consensus       242 e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~  275 (371)
                      +..-.=--+..|+++++|+.+|+.+..+++.++.
T Consensus       171 Q~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~  204 (207)
T cd07635         171 QERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            4411111156799999999999999999998864

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=98.34  E-value=4.3e-07  Score=87.82  Aligned_cols=63  Identities=21%  Similarity=0.394  Sum_probs=55.3

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEE--eCCCCeeEEEe-CCeeeEecCCceeeccCCCCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRK--VSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~--~~d~GWweGe~-~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ....+.|||+|.+.++.||+|.+||.+.|+.  ..|++||.++. .|..|++|.|||.++..-|.+
T Consensus       190 vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~t  255 (379)
T KOG4226|consen  190 VLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPST  255 (379)
T ss_pred             EEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccc
Confidence            4556899999999999999999999999975  45889999994 899999999999999876644

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=7.5e-07  Score=92.48  Aligned_cols=58  Identities=26%  Similarity=0.379  Sum_probs=50.8

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeC---CCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS---PSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~---d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ..+-|+|||++++++||+|.+||.++|++..   +.+||.++.+|+.||||.||+-....+
T Consensus       684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPri  744 (752)
T KOG0515|consen  684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRI  744 (752)
T ss_pred             ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccc
Confidence            4578999999999999999999999999764   447999999999999999998765443

>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]

Probab=98.24  E-value=8.7e-07  Score=82.59  Aligned_cols=56  Identities=29%  Similarity=0.417  Sum_probs=51.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      ...++|+|||.++.++|.+|.-||.|.-+..+++||..|.+  +|..|..|+||+|.+
T Consensus       207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            35689999999999999999999999999999999999985  899999999999853

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=98.24  E-value=0.00026  Score=66.22  Aligned_cols=133  Identities=14%  Similarity=0.133  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh------hhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccC
Q 017467          131 AAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA  204 (371)
Q Consensus       131 A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~------~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~  204 (371)
                      ....|..+++.|...-......+...|++|+..+..-.+      ++++++|. |||++|+.++..      .+.|. +-
T Consensus        72 ~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~l-Dyd~~~~k~~k~------~~~k~-~~  143 (216)
T cd07599          72 RLSRYVKALEELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKL-DYDKLQNKLNKL------LQKKK-EL  143 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH------HhcCC-CC
Confidence            344677777777654444455888999999999987543      35688888 999998887661      22221 11


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHH
Q 017467          205 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG  272 (371)
Q Consensus       205 ~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~  272 (371)
                      +..| ..+|..|+++|++.+..+..++..+..-|+.+-+-...+--.-+.+++--++.|+......+.
T Consensus       144 ~~kd-~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~  210 (216)
T cd07599         144 SLKD-EKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQ  210 (216)
T ss_pred             ChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1113 479999999999999999999999999988765522221112244466667777766655443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=98.22  E-value=0.00037  Score=65.71  Aligned_cols=179  Identities=13%  Similarity=0.175  Sum_probs=121.0

Q ss_pred             HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467           87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus        87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +.+.+.+++.-....-..+..||..+.-||..     ++..|++||..++++...|.+.++.-...+-..|++||..+..
T Consensus        23 l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~-----E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~   97 (211)
T cd07598          23 LCQDFAAYTRKTARLRDKGDELAKSINAYADT-----ENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGT   97 (211)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555544444445556788889999985     3457999999999999999999999999999999999998876


Q ss_pred             cChh-hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017467          167 GAPL-EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ  245 (371)
Q Consensus       167 ~~~~-e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qq  245 (371)
                      --+- .+.++..++   -|...    .--..+..|.|....++ -.+|.+||.+++..+.-.....+....-|...|.  
T Consensus        98 l~k~~k~~~K~~~~---ar~~~----~~~~~~leklk~~~~~d-~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~--  167 (211)
T cd07598          98 ICKHARDDLKNTFT---ARNKE----LKQLKQLEKLRQKNPSD-RQIISQAESELQKASVDANRSTKELEEQMDNFEK--  167 (211)
T ss_pred             HHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3311 122221110   11111    11112233444322233 3567679999999988888888878777877766  


Q ss_pred             hHhh-H-hhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467          246 HRLT-F-QRLVAMVEGEKNYHLRIAAILGDVEAEMVS  280 (371)
Q Consensus       246 qrlt-~-~~L~~~veae~~yhq~~~~IL~~L~~~l~s  280 (371)
                      +++. + .-|..|+.++..||.++.++...+...+.+
T Consensus       168 ~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~  204 (211)
T cd07598         168 QKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQN  204 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3322 3 347789999999999999998887766543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]

Probab=98.22  E-value=3.8e-07  Score=93.48  Aligned_cols=55  Identities=29%  Similarity=0.478  Sum_probs=51.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i  358 (371)
                      .+++|+|||++-++.|++|..+|.|.++...+.|||.|.. .|..|+||+|||+.+
T Consensus       428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            4689999999999999999999999999999999999995 799999999999865

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family

Probab=98.18  E-value=0.00039  Score=65.42  Aligned_cols=194  Identities=16%  Similarity=0.231  Sum_probs=128.2

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467           68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  147 (371)
Q Consensus        68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~  147 (371)
                      --||+|..   +|+.    |.+++.+++.++.--.+++.++|+.+..=  .     ..-.+|.+|+.+.+.++.|+..+.
T Consensus        10 P~~e~lv~---~~~k----Y~~al~~~~~a~~~f~dal~ki~~~A~~s--~-----~s~~lG~~L~~~s~~~r~i~~~~~   75 (219)
T PF08397_consen   10 PAWENLVS---LGKK----YQKALRAMSQAAAAFFDALQKIGDMASNS--R-----GSKELGDALMQISEVHRRIENELE   75 (219)
T ss_dssp             HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTS--S-----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCC--C-----ccccHHHHHHHHHHHHHHHHHHHH
Confidence            34555543   3444    45677888888777777877777765531  1     123699999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhhcChhhh---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHH
Q 017467          148 DFNRLLSSQVLDPLRAMITGAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK  224 (371)
Q Consensus       148 ~l~~~~~~~~~~PL~~~~~~~~~e~---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk  224 (371)
                      .+...+-..||-||..-+..+.+..   =++....|++.|.+++....++.|=+.|.+. ..++.-..++.+   ++.+.
T Consensus        76 ~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k-gk~~~~~~~~~~---~~~v~  151 (219)
T PF08397_consen   76 EVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK-GKDDQKYELKEA---LQDVT  151 (219)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CTSCHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCccccHHHHHH---HHHHH
Confidence            9999999999999999999888754   2444456666666666666665332222221 122322334444   44444


Q ss_pred             HHHHHhhHHHHHHHHH-HHHHhhHhh--HhhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467          225 ANMAILGKEAAAALAA-IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV  279 (371)
Q Consensus       225 ~~m~~lgkea~~am~~-ve~qqqrlt--~~~L~~~veae~~yhq~~~~IL~~L~~~l~  279 (371)
                      .....+..-...++-. +.+...|.+  +..++.+++.+..||..+..+|...-....
T Consensus       152 ~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~  209 (219)
T PF08397_consen  152 ERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQ  209 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            4444455545555554 333445666  578999999999999998777766544443

In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.

>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein

Probab=98.13  E-value=0.0002  Score=66.45  Aligned_cols=158  Identities=13%  Similarity=0.146  Sum_probs=102.2

Q ss_pred             hchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 017467           78 RGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHV-EKEQEDFNRLL  153 (371)
Q Consensus        78 ~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~-~~~~~~l~~~~  153 (371)
                      .+.+.++||   |.++|.+..   .-+.+.   ....|-=|+..++   .+  . .+...|..++..+ +..+.++...+
T Consensus        19 ~~~~~l~kd~k~Y~~~~~~~~---~~~~~~---~~~~~d~y~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~e~~~~i   86 (195)
T cd07589          19 KQVQLVVRNVELYLQHVQESV---LVKVLA---LEVVLDLYPSNHP---RL--E-SKWERFRRVVRGISSKALPEFKSRV   86 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHhccCCCh---hh--H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789998   777887776   333333   2222333776665   21  2 2344555555554 44889999999


Q ss_pred             HhhhhhHHHHhhhcCh------hhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 017467          154 SSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM  227 (371)
Q Consensus       154 ~~~~~~PL~~~~~~~~------~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m  227 (371)
                      ...|++|+..+..-.+      +++.++|- ||+|.|+..+                       ++..|+.++++.+..+
T Consensus        87 ~~~V~~Pl~~~~~~~~~~~k~I~KR~~Kll-DYdr~~~~~~-----------------------k~~k~e~~l~~a~~~y  142 (195)
T cd07589          87 RKLVIEPLSSLLKLFSGPQKLIQKRYDKLL-DYERYKEKKE-----------------------RGGKVDEELEEAANQY  142 (195)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhc-cHHHHHHHHH-----------------------hhcchHHHHHHHHHHH
Confidence            9999999999976442      34567777 7887555432                       2334566666666666


Q ss_pred             HHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHH
Q 017467          228 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL  271 (371)
Q Consensus       228 ~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL  271 (371)
                      ..++..+..-|+.+-+--..+.-.-+.+|+..|..||....+-+
T Consensus       143 ~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~~  186 (195)
T cd07589         143 EALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKRA  186 (195)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666688888876552333333568889999999998886653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=98.07  E-value=1.2e-06  Score=82.94  Aligned_cols=60  Identities=23%  Similarity=0.424  Sum_probs=54.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...++++|||.++...+|.|++|+++.|+.+.+..||..+ ..|+.|++|.+||+...+..
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~  184 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPAS  184 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhh
Confidence            3467889999999999999999999999999999999999 48999999999999876544

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=98.06  E-value=2e-06  Score=80.42  Aligned_cols=55  Identities=25%  Similarity=0.414  Sum_probs=51.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceee
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  357 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~  357 (371)
                      .....++|||.+..+++|.|.+||.+.|+...++.||.|.+.|+.|+||++||..
T Consensus       163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p  217 (222)
T KOG3601|consen  163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAP  217 (222)
T ss_pred             chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccc
Confidence            3457899999999999999999999999999999999999999999999999864

>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1

Probab=98.04  E-value=0.0011  Score=62.56  Aligned_cols=201  Identities=14%  Similarity=0.186  Sum_probs=125.8

Q ss_pred             ceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHH
Q 017467           57 MVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYG  136 (371)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g  136 (371)
                      ..++|+==.-+..|+||              ++-+.|++.+|.-+++.-.-+.+...+.|.-.- +.++...|.|++.|+
T Consensus         5 ~~~ee~l~~~e~~L~Kl--------------~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~-~~dd~~i~~a~~kfs   69 (215)
T cd07641           5 NVLEEALDQDRTALQKV--------------KKSVKAIYNSGQDHVQNEENYAQALDKFGSNFL-SRDNPDLGTAFVKFS   69 (215)
T ss_pred             HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHH
Confidence            34555544456667765              566677777777777777777777777787752 236778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhh-hhhhhHHhhhhHHHHHHHHHHHHH---HhhccCCCcccHHH
Q 017467          137 DARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDAR-HLAQRYSRMRQEAETQAVEVSKRQ---QRVREAPNPENVAK  212 (371)
Q Consensus       137 ~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R-~L~~dy~r~Rq~~e~~~~ev~rRq---~K~re~~~~d~~~k  212 (371)
                      ..++.|...--.|-.++..-|.-||.+++-+|++.. | -+...++|....+|+...-.++..   .|--+-..+| +.-
T Consensus        70 ~~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~-K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e-~~~  147 (215)
T cd07641          70 TLTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGV-KGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTE-ITG  147 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhcc-ccc
Confidence            999999999999999999999999999999887654 3 444456666666655554332211   1210000111 000


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467          213 LHAAEARMQELKANMAILGKEAAAALA---AIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  278 (371)
Q Consensus       213 l~~Ae~Kl~elk~~m~~lgkea~~am~---~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l  278 (371)
                      .. |.+-|.-.+..   +...+..=+.   .++....---++.|+++..|+.+|+++..+.+++|..-+
T Consensus       148 ~E-aa~~l~~~Rr~---Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~  212 (215)
T cd07641         148 AE-IAEEMEKERRL---FQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYI  212 (215)
T ss_pred             hh-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11 22333333332   1111111111   122211111167899999999999999999999987654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar

>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=3.3e-06  Score=82.93  Aligned_cols=60  Identities=27%  Similarity=0.239  Sum_probs=49.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeC-----CCCeeEEE-e-CCeeeEecCCceeeccCCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-----PSGWSEGE-C-KGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~-----d~GWweGe-~-~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ..|+|+|||.+.++.||+|++||.+.|..+.     +..||... + +|..||||.|||+.+..-|.
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~q  335 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQPQ  335 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCCC
Confidence            4689999999999999999999999987543     33477776 4 56789999999999876443

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=7.2e-06  Score=83.02  Aligned_cols=54  Identities=30%  Similarity=0.497  Sum_probs=49.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCC--CCeeEEEeCCeeeEecCCceee
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGECKGKAGWFPSANVEK  357 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d--~GWweGe~~Gk~G~FPsnYVE~  357 (371)
                      ..+.++|+|..+.+++|+|++||+|+++++.+  ..||.|..+|..|+||+|||+.
T Consensus       417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            37899999999999999999999999987664  4799999999999999999963

>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3

Probab=97.85  E-value=0.0041  Score=58.29  Aligned_cols=180  Identities=13%  Similarity=0.167  Sum_probs=116.9

Q ss_pred             HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467           87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus        87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +-+.|+++.++|-.++|.-..++|.+.+.|+.-- +.++..+|-|.+.|+--.+.++-.--+|-.++..-+.=||.+++-
T Consensus        21 ~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l-~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK   99 (213)
T cd07640          21 IKKIVKAIHNSGLNHVENEEQYTEALENLGNSHL-SQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLK   99 (213)
T ss_pred             HHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhh-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHH
Confidence            3456778899999999999999999999999766 556788999999999999999988888888888889999999988


Q ss_pred             cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC--CcccHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017467          167 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP--NPENVA-----KLHAAEARMQELKANMAILGKEAAAALA  239 (371)
Q Consensus       167 ~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~--~~d~~~-----kl~~Ae~Kl~elk~~m~~lgkea~~am~  239 (371)
                      +|++.. |   -||+|   .+|...-|++-...|....+  .|- ..     +...|.+-|+-.+..   +...+..=+.
T Consensus       100 ~dlr~~-K---~D~KK---~FeK~skDyE~kl~K~ak~~r~k~~-~~g~~~~e~eEaae~l~~eRr~---Fql~acdYll  168 (213)
T cd07640         100 GQLRDG-R---LESKK---QMEKAWKDYEAKIGKLEKERREKQK-QHGLIRLDMTDTAEDMQRERRN---FQLHMCEYLL  168 (213)
T ss_pred             HHhhhh-h---HHHHh---HHHHHHHHHHHHHHHHhccccccch-hcccccccHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            776543 2   23333   23444444444434332111  110 00     112233333333333   1111211111


Q ss_pred             HHHH-HhhH--hhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467          240 AIEA-QQHR--LTFQRLVAMVEGEKNYHLRIAAILGDVEAEM  278 (371)
Q Consensus       240 ~ve~-qqqr--lt~~~L~~~veae~~yhq~~~~IL~~L~~~l  278 (371)
                      .+.. |-.+  --++.|+++.+|+.+|+++-.+.+++|..-+
T Consensus       169 kin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyi  210 (213)
T cd07640         169 KAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFI  210 (213)
T ss_pred             HHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            2111 1111  1168899999999999999999999987644

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran

>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1

Probab=97.80  E-value=0.0035  Score=58.94  Aligned_cols=179  Identities=11%  Similarity=0.128  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017467           85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENI------LPKAAAIYGDARKHVEKEQEDFNRLLSSQVL  158 (371)
Q Consensus        85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~------l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~  158 (371)
                      ++||+-..++|.+|....=....++.++.-++-+-   ..+..      .+.+|-.||..+..|++.+.-|..+....++
T Consensus        19 kkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~---igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~   95 (207)
T cd07633          19 KDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDF---IGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLI   95 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666665555555555555555555542   23333      7899999999999999999999999999999


Q ss_pred             hHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017467          159 DPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAA  237 (371)
Q Consensus       159 ~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~a  237 (371)
                      .||+.++--++.. .+--...|+|-+..+++...-    -...  |+ +.+  .+++.|.+.|.-.+..+-..--+=.--
T Consensus        96 ~~L~~F~Kedi~~-~Ke~KK~FdK~se~~~~aL~k----~a~~--s~k~K~--~e~eEA~~~L~~~r~~F~~~aLdYV~q  166 (207)
T cd07633          96 KPLENFRKEQIGF-TKERKKKFEKDSEKFYSLLDR----HVNL--SSKKKE--SQLQEADLQVDKERQNFYESSLEYVYQ  166 (207)
T ss_pred             HHHHHHHHHHHHH-HHHHhhhhhhhhhHHHHHHHH----Hhcc--cccCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987644332 222333444544443221111    0101  01 223  478888888888777642221111111


Q ss_pred             HHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467          238 LAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE  275 (371)
Q Consensus       238 m~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~  275 (371)
                      ++.|+....-=-|.-|++|+.+..+|+.+-.+++.++.
T Consensus       167 I~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~  204 (207)
T cd07633         167 IQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFL  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence            11222210001146689999999999999999988764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4773 consensus NADPH oxidase [Energy production and conversion]

Probab=97.78  E-value=4.2e-06  Score=83.21  Aligned_cols=68  Identities=26%  Similarity=0.367  Sum_probs=59.8

Q ss_pred             CCcccccceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCC
Q 017467          296 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       296 s~s~~~~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      +.+.++....+.+++||..+...||.|..||++.+...++.+||.|...|.+||||..|++.+...|.
T Consensus       168 ni~~~~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe  235 (386)
T KOG4773|consen  168 NIVLGMAAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE  235 (386)
T ss_pred             cccchhhhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence            33444455678999999999999999999999999999999999999999999999999998876665

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=97.70  E-value=6.5e-06  Score=84.88  Aligned_cols=57  Identities=28%  Similarity=0.427  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ...++|+.||....++||.|+++|+|++++.-++..|.|+.+|-+||||+.||+.+.
T Consensus       548 ~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld  604 (848)
T KOG2222|consen  548 AKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD  604 (848)
T ss_pred             hHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence            346889999999999999999999999999999999999999999999999998653

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=97.62  E-value=0.024  Score=52.86  Aligned_cols=158  Identities=16%  Similarity=0.233  Sum_probs=94.9

Q ss_pred             hhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--ChhhhhhhhhhhHHhh
Q 017467          106 TKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLEDARHLAQRYSRM  183 (371)
Q Consensus       106 ~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e~~R~L~~dy~r~  183 (371)
                      ..||.++...|.--.    +..++.++..+|++...+.+..+.+...--..|.+||+.+..-  +.++.   |.+| .+.
T Consensus        62 ~e~~~~~~~la~~E~----~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~---l~~R-~~~  133 (236)
T PF09325_consen   62 AEFGSSFSQLAKSEE----EKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEA---LNRR-DKK  133 (236)
T ss_pred             HHHHHHHHHhhcccC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHH-HHH
Confidence            356666666665433    3469999999999999999999999999999999999987652  22221   1111 122


Q ss_pred             hhHHHHHHHHHHHHHHhh---ccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHhhHhhH-h
Q 017467          184 RQEAETQAVEVSKRQQRV---REAP-NPENVAKLHAAEARMQELKANMAILGKE-------AAAALAAIEAQQHRLTF-Q  251 (371)
Q Consensus       184 Rq~~e~~~~ev~rRq~K~---re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgke-------a~~am~~ve~qqqrlt~-~  251 (371)
                      ..+++....++.+++...   +.+. ++  ..|+..|+..+.++...+.....+       +...+...+. .....+ .
T Consensus       134 ~~~~~~a~~~l~kkk~~~~kl~~~~~~~--~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~-~k~~d~k~  210 (236)
T PF09325_consen  134 LIEYQNAEKELQKKKAQLEKLKASGKNR--QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEK-EKVKDFKS  210 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            334444455555444432   2121 12  146666666666655554433333       3333322222 111123 3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHh
Q 017467          252 RLVAMVEGEKNYHLRIAAILGDV  274 (371)
Q Consensus       252 ~L~~~veae~~yhq~~~~IL~~L  274 (371)
                      -|..+++.+..||+++.++-+.+
T Consensus       211 ~l~~~~~~~i~~~~~~~~~We~~  233 (236)
T PF09325_consen  211 MLEEYAESQIEYQKKMLEAWETF  233 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhH
Confidence            58889999999999998887654

This is the C-terminal dimerisation domain [].

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=97.60  E-value=0.015  Score=52.87  Aligned_cols=160  Identities=13%  Similarity=0.216  Sum_probs=92.1

Q ss_pred             hHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc-----ChhhhhhhhhhhHH
Q 017467          107 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG-----APLEDARHLAQRYS  181 (371)
Q Consensus       107 ~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~-----~~~e~~R~L~~dy~  181 (371)
                      .||.++..++..-. . .+..|+.++..+|.++..+....+.+....-..|++||+.+..-     +.+..=.++-.+|+
T Consensus        43 elg~~~~~Ls~~e~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~  120 (218)
T cd07596          43 EFGKALIKLAKCEE-E-VGGELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQ  120 (218)
T ss_pred             HHHHHHHHHHhhcc-c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777776533 0 11259999999999999999999999999999999999998851     11222122233444


Q ss_pred             hhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHhhHhhH-hhH
Q 017467          182 RMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK-------ANMAILGKEAAAALAAIEAQQHRLTF-QRL  253 (371)
Q Consensus       182 r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk-------~~m~~lgkea~~am~~ve~qqqrlt~-~~L  253 (371)
                      .+.+.+.......+    |.+..+++. ..++..++.++.++.       ..+..+...+...|...+. .....+ .-|
T Consensus       121 ~~~~~l~~k~~~~~----kl~~~~~~~-~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~-~~~~dlk~~l  194 (218)
T cd07596         121 SLKKDLASKKAQLE----KLKAAPGIK-PAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHE-ERARDLKAAL  194 (218)
T ss_pred             HHHHHHHHHHHHHH----HHhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            44444433333322    221111111 124444444444444       3333333333333333222 111123 346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 017467          254 VAMVEGEKNYHLRIAAILGDV  274 (371)
Q Consensus       254 ~~~veae~~yhq~~~~IL~~L  274 (371)
                      ..+++.+..|++.+.++...+
T Consensus       195 ~~~~~~qi~~~~~~~~~W~~~  215 (218)
T cd07596         195 KEFARLQVQYAEKIAEAWESL  215 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            779999999999998887764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes

Probab=97.58  E-value=0.02  Score=54.59  Aligned_cols=175  Identities=15%  Similarity=0.220  Sum_probs=111.1

Q ss_pred             HHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC
Q 017467           89 KVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA  168 (371)
Q Consensus        89 r~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~  168 (371)
                      +++.+++.++.--.+...++||.-..  +. |    --.+|.+|..+.+.++.++...+.+...+-..+|.||..=+..+
T Consensus        34 kal~a~~~a~~~~~dAl~kia~~A~~--s~-~----sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d  106 (223)
T cd07605          34 KALQALSQAAKVFFDALAKIGELASQ--SR-G----SQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELD  106 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc--CC-c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            34555555555555555555554332  11 2    12588888888888888988888888888999999999888877


Q ss_pred             hhhh---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHH
Q 017467          169 PLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQ  244 (371)
Q Consensus       169 ~~e~---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~q  244 (371)
                      .+.+   =.+-..+|++.|.+++.-..++.+=+.|.+.+..+....++.++.+-+..-..   .|..-...++..+ -..
T Consensus       107 ~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~---ele~~~~~~lr~al~EE  183 (223)
T cd07605         107 QKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQK---ELEAFVSQGLRDALLEE  183 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            7754   23344478888888888888876544444421112223466666544433333   3333344455442 223


Q ss_pred             hhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467          245 QHRLT--FQRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       245 qqrlt--~~~L~~~veae~~yhq~~~~IL~~  273 (371)
                      ..|.+  ++.++.+++.+..||......|..
T Consensus       184 RrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~  214 (223)
T cd07605         184 RRRYCFLVDKHCSVAKHEIAYHAKAMTLLST  214 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444  478888999999999888776654

Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me

>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1

Probab=97.57  E-value=0.024  Score=53.73  Aligned_cols=185  Identities=9%  Similarity=0.128  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccC-CCCCCCCchhHHHHHHHHHHHHH
Q 017467           64 MQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHV  142 (371)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~-~~~~~~~~l~~A~~~~g~a~~~~  142 (371)
                      -|-||-+++.|-.|+.----                     -.+++.-..-|-..+ .+..+|...+.+|-.|+.++..|
T Consensus        19 ~~~~~~~~~~~~a~~~ls~a---------------------~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El   77 (215)
T cd07631          19 NQLFQAMHRIYDAQNELSAA---------------------THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDEL   77 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHH
Confidence            46799999999877611111                     124666667777322 21246667999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHH-HHHHHHH
Q 017467          143 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLH-AAEARMQ  221 (371)
Q Consensus       143 ~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~-~Ae~Kl~  221 (371)
                      ++.+.-|-..+..-++.||..+...|+.+ ++-+...|+|-..+.+.-..-..+ ..|.|    ++  ++++ .|.+-+.
T Consensus        78 ~~~~~~L~~q~~~sl~~pL~~F~kedL~~-~Ke~KK~FdK~Se~~d~Al~K~a~-lsk~K----~~--E~~~eea~~~v~  149 (215)
T cd07631          78 SSCHAVLSTQLADAMMFPITQFKERDLKE-ILTLKEVFQIASNDHDAAINRYSR-LSKRR----EN--EKVKYEVTEDVY  149 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhc-CCCCC----Cc--hHHHHHHHHHHH
Confidence            99999999999999999999999988865 477777888877776554433321 11222    12  2232 2333333


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHHHHHHHH-HHHHhHHHH
Q 017467          222 ELKANMAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAA-ILGDVEAEM  278 (371)
Q Consensus       222 elk~~m~~lgkea~~am~~ve~qqqrlt-~~~L~~~veae~~yhq~~~~-IL~~L~~~l  278 (371)
                      -.+...-..--+-...++.++.. .+.. +..|.++++|+..|+.+..+ +..++..-+
T Consensus       150 ~tR~~F~~~aLdYv~qLn~lQ~r-KKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~  207 (215)
T cd07631         150 TSRKKQHQTMMHYFCALNTLQYK-KKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFL  207 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34443222222223333333331 1111 56799999999999999999 554655443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo

>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules

Probab=97.50  E-value=0.049  Score=52.06  Aligned_cols=215  Identities=18%  Similarity=0.215  Sum_probs=136.5

Q ss_pred             hHHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccC
Q 017467           40 QAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN  119 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~  119 (371)
                      |.+.+.||.+|-   .-+|+=-.||.  -+||.|=...    .+=+.+++-++.++..=+.-.+.-+.||+.+.--|..-
T Consensus        14 q~~~e~~g~~~~---~~~it~D~eL~--~kle~l~~~~----~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e   84 (229)
T PF06456_consen   14 QMVSEKLGKKED---SRAITVDDELD--AKLELLRDTQ----RTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVRE   84 (229)
T ss_dssp             -------------------CHHHHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHcCcccc---cchhhcchHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            478889985553   23443334443  2344332111    12234666666666665655555568999999999843


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHH
Q 017467          120 NQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQ  199 (371)
Q Consensus       120 ~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~  199 (371)
                      .    ...+|.+...+|++++.|++-+..|...+. -|+.-|+++.++++ +|.+.-...|+.-|-|+.+-..++..=..
T Consensus        85 ~----~~~l~~~f~~~~~~~~~~~~~~~~L~~~l~-~~~~~l~Tf~~kaI-~DT~~Tik~ye~aR~EY~ay~~~lke~~~  158 (229)
T PF06456_consen   85 K----SPALGEEFSANGEAQRSLAKQGETLLKALK-RFLSDLNTFRNKAI-PDTLLTIKKYEDARFEYDAYRLWLKEMSD  158 (229)
T ss_dssp             H-----CCGHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3    235999999999999999999999998865 47778888888765 56677777888888888887777743332


Q ss_pred             hhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHH
Q 017467          200 RVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL  271 (371)
Q Consensus       200 K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL  271 (371)
                      +  +.+ ..-...+.+.+...++++|+.+..|-.+...-|.-+++.--++-..+|..++.+...||..+.+.|
T Consensus       159 e--~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~l  229 (229)
T PF06456_consen  159 E--LDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQAL  229 (229)
T ss_dssp             ---TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--cCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence            2  122 222246888889999999998888877777777766663333334678999999999998876653

The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.

>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2

Probab=97.32  E-value=0.035  Score=52.48  Aligned_cols=161  Identities=12%  Similarity=0.169  Sum_probs=105.2

Q ss_pred             HhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhH
Q 017467          108 LSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE  186 (371)
Q Consensus       108 l~e~~~kYg~e~~~-~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~  186 (371)
                      |+.-.+-|...+-. |.+|...+.+|..|+.++..|++.+.-|......-++.||+.++..|+.+. +-+...|+|.+.+
T Consensus        42 ~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~v-Ke~KK~FdK~Se~  120 (215)
T cd07632          42 LSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEV-STLKDLFGIASNE  120 (215)
T ss_pred             HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHH
Confidence            45556678775432 456777899999999999999999999999999999999999999888774 7777788887777


Q ss_pred             HHHHHHHHHHHHHhhccCCCcccHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHH
Q 017467          187 AETQAVEVSKRQQRVREAPNPENVAKLHAAEAR--MQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYH  264 (371)
Q Consensus       187 ~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~K--l~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yh  264 (371)
                      .++-..-..+ ..|.|+    .   ++..|++-  +...+...-...-+-.-.++.++..-.-=-+.-|.+++.|+.+|+
T Consensus       121 ~d~AL~Knaq-lskkK~----~---E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFF  192 (215)
T cd07632         121 HDLSMAKYSR-LPKKRE----N---EKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFF  192 (215)
T ss_pred             HHHHHHHHhh-CCcCCc----h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7554443321 112221    1   22224332  444444432222223333444433111011467889999999999


Q ss_pred             HHHHHHHHHhHHH
Q 017467          265 LRIAAILGDVEAE  277 (371)
Q Consensus       265 q~~~~IL~~L~~~  277 (371)
                      .+-.+++.+--..
T Consensus       193 hQGyeL~~~~~~~  205 (215)
T cd07632         193 KKGAELFSKKLDS  205 (215)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988764333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac

>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]

Probab=97.26  E-value=7.9e-05  Score=73.01  Aligned_cols=55  Identities=24%  Similarity=0.338  Sum_probs=51.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..|.++|+|.+..++||....||++.+-+....|||.|+..|..|.||+.|+++.
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            3589999999999999999999999888889999999999999999999999864

>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.00014  Score=74.64  Aligned_cols=61  Identities=30%  Similarity=0.480  Sum_probs=52.1

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEE-eCCCCeeEEEe-CCeeeEecCCceeeccCCCCCC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRK-VSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVSN  365 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~-~~d~GWweGe~-~Gk~G~FPsnYVE~i~~lP~sk  365 (371)
                      .+|++|||..++..|+++..||++.+++ ....|||+|.. .|..|.||+.||+++...-++.
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~sS   66 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVASS   66 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccchh
Confidence            4789999999999999999999999875 44779999994 8999999999999987544433

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.14  E-value=0.00039  Score=74.54  Aligned_cols=57  Identities=28%  Similarity=0.511  Sum_probs=47.9

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCC-eeEEEe-CCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGEC-KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~G-WweGe~-~Gk~G~FPsnYVE~i~~  360 (371)
                      .....|||||.+.++..|++.+||.+.|+.-..+| |.+.+. +|+ ||+|+||+..+..
T Consensus        90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNS  148 (1157)
T KOG4278|consen   90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNS  148 (1157)
T ss_pred             CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccc
Confidence            34689999999999999999999999999766554 777775 666 9999999987644

>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis

Probab=97.13  E-value=0.099  Score=50.00  Aligned_cols=133  Identities=19%  Similarity=0.223  Sum_probs=86.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhh----HHhhhhHHHHHHHHHHHHHHhhc
Q 017467          127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQR----YSRMRQEAETQAVEVSKRQQRVR  202 (371)
Q Consensus       127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~d----y~r~Rq~~e~~~~ev~rRq~K~r  202 (371)
                      .+|-+|..+..-++.|+.-...|...+-..+|.||+.-+.- -+...=.||.|    |+|.|++.-....|.-|=+.|+|
T Consensus        68 ElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~-wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~r  146 (231)
T cd07643          68 EIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEE-WKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKAR  146 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            69999999999999999999999999999999999887662 22234445555    99999999888888777776766


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHhhHhh--HhhHHHHHHHHHHHHH
Q 017467          203 EAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA--IEAQQHRLT--FQRLVAMVEGEKNYHL  265 (371)
Q Consensus       203 e~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~--ve~qqqrlt--~~~L~~~veae~~yhq  265 (371)
                      +.. ++.-..|.+|..-...-...+.++.+   .++-+  +|+ -.|.+  ++.|...++.|..-.-
T Consensus       147 Kg~-~~~~~~ldsa~~dvn~k~~~lEe~ek---~alR~aLiEE-R~Rfc~Fvs~l~pVl~~e~~ml~  208 (231)
T cd07643         147 KGK-GDLQPQLDSAMQDVNDKYLLLEETEK---KAVRNALIEE-RGRFCTFVSFLKPVLDEEISMLG  208 (231)
T ss_pred             ccC-CccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHh
Confidence            543 33224555555433333333333333   22332  232 23433  4667777777665543

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=97.09  E-value=0.19  Score=47.50  Aligned_cols=185  Identities=13%  Similarity=0.181  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 017467           66 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE  145 (371)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~  145 (371)
                      -+++|-+||.++-+--.-.|++.-+              ...+|.++..-|+--.    ...|++|+..+|++...|...
T Consensus        24 Le~~Lk~l~~~~e~lv~~r~ela~~--------------~~~f~~s~~~L~~~E~----~~~Ls~al~~la~~~~ki~~~   85 (224)
T cd07623          24 LDQQLRKLHASVESLVNHRKELALN--------------TGSFAKSAAMLSNCEE----HTSLSRALSQLAEVEEKIEQL   85 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHHH
Confidence            4667777776655544444444433              3356777777776322    246999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHhhh--cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHh---hccCCCcc----cHHHHHHH
Q 017467          146 QEDFNRLLSSQVLDPLRAMIT--GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR---VREAPNPE----NVAKLHAA  216 (371)
Q Consensus       146 ~~~l~~~~~~~~~~PL~~~~~--~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K---~re~~~~d----~~~kl~~A  216 (371)
                      .+.....--..|.+||.-++-  ++.+.    +-.+-.+..+..+.-..++.+++.+   ..-..++|    .-.+|+.|
T Consensus        86 ~~~qa~~d~~~l~e~L~eY~r~i~svk~----~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~  161 (224)
T cd07623          86 HGEQADTDFYILAELLKDYIGLIGAIKD----VFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEW  161 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence            999888888999999998875  22222    2222222223333333333333332   11110121    12345555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh-hH-hhHHHHHHHHHHHHHHHHHHHHHh
Q 017467          217 EARMQELKANMAILGKEAAAALAAIEAQQHRL-TF-QRLVAMVEGEKNYHLRIAAILGDV  274 (371)
Q Consensus       217 e~Kl~elk~~m~~lgkea~~am~~ve~qqqrl-t~-~~L~~~veae~~yhq~~~~IL~~L  274 (371)
                      +.+.+..+..+..+..-....|...+.  .++ .+ ..|..+++.+..|..++.+.-+.+
T Consensus       162 e~~~~~a~~~fe~is~~~k~El~rF~~--erv~dfk~~l~~~le~~i~~q~~~~~~We~~  219 (224)
T cd07623         162 EAKVDRGQKEFEEISKTIKKEIERFEK--NRVKDFKDIIIKYLESLLNTQQQLIKYWEAF  219 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666666665555555555443  221 12 357778888888888877665543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30

Probab=97.08  E-value=0.07  Score=49.63  Aligned_cols=127  Identities=17%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccC
Q 017467          127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA  204 (371)
Q Consensus       127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~  204 (371)
                      .|+.|+-.+|.+..++...-..+...+..+|++||+.|+.  ++++..-++    =+..+...|....++.++..+.   
T Consensus        67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~----R~~~q~~~e~~~e~L~~k~~~l---  139 (200)
T cd07624          67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLKR----RDQFQIEYELSVEELNKKRLEL---  139 (200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---
Confidence            5999999999999999999999999999999999998875  222221111    1122333455555555554443   


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH-hhHHHHHHHHHHHHHHHHHHHHH
Q 017467          205 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       205 ~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~-~~L~~~veae~~yhq~~~~IL~~  273 (371)
                           ..++..|+.+++.....|       ..-+...+. +.+..+ ..|..|++.+..|++.+.+.-+.
T Consensus       140 -----~~ev~~a~~~~e~~~~~~-------~~E~~rF~~-~K~~d~k~~l~~~a~~qi~~~~~~~~~We~  196 (200)
T cd07624         140 -----LKEVEKLQDKLECANADL-------KADLERWKQ-NKRQDLKKILLDMAEKQIQYYEQCLAAWEE  196 (200)
T ss_pred             -----HHHHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 246777778887776653       222222222 122223 45888999999999998766544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=97.05  E-value=0.00045  Score=76.40  Aligned_cols=55  Identities=24%  Similarity=0.429  Sum_probs=46.9

Q ss_pred             EEEEecCCCCC--------CCCCccCCCCCEEEEEE-eCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          305 LAEAIHPFTAA--------SEKELSLGVGDYVVVRK-VSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       305 ~arALydfea~--------~~~ELsf~~GDiI~Vl~-~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ..+|+|||++-        .+.||.|++|++|.|+- ++.+|+|.|+++|+.|++|+|+|.++.
T Consensus      1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred             eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccccccccccccccccccc
Confidence            57899999873        24589999999999985 556699999999999999999998763

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=97.03  E-value=0.0014  Score=62.53  Aligned_cols=57  Identities=35%  Similarity=0.428  Sum_probs=49.1

Q ss_pred             eEEEEecCCCCC--CCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          304 FLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       304 ~~arALydfea~--~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ..++++.+-.|.  +...|.+.+||+|.|++..-+|-|+|+++|+.|.||..||+....
T Consensus       228 a~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~  286 (293)
T KOG4792|consen  228 AYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDV  286 (293)
T ss_pred             hheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeecc
Confidence            467888876654  455799999999999999999999999999999999999987654

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=96.98  E-value=0.0007  Score=71.61  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=52.3

Q ss_pred             hhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCC-C-CCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017467           80 TKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN-Q-NINENI-LPKAAAIYGDARKHVEKEQEDFNRLLSSQ  156 (371)
Q Consensus        80 ~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~-~-~~~~~~-l~~A~~~~g~a~~~~~~~~~~l~~~~~~~  156 (371)
                      +++|=|+|++--..+|+.-....-++.+++.....|--|-- + -++|.. .+..|-+||.-.++++++|--|..+-..-
T Consensus        32 tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~~Ase~  111 (812)
T KOG1451|consen   32 TNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVGNASES  111 (812)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            35566666666666666665555555566655554422210 0 012322 45666677777777777777777776666


Q ss_pred             hhhHHHHh---hhcChhhh
Q 017467          157 VLDPLRAM---ITGAPLED  172 (371)
Q Consensus       157 ~~~PL~~~---~~~~~~e~  172 (371)
                      .|+||..+   +-|..+|.
T Consensus       112 li~PlekFRkEqIG~~KE~  130 (812)
T KOG1451|consen  112 LIEPLEKFRKEQIGTLKEE  130 (812)
T ss_pred             HHhHHHHHHHHHhhhhHHH
Confidence            77776443   33444544

>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p

Probab=96.88  E-value=0.45  Score=45.65  Aligned_cols=207  Identities=17%  Similarity=0.197  Sum_probs=123.7

Q ss_pred             HHHhhhccCCCCCCccceecHHHHHHHHHHHHH-HhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccC
Q 017467           41 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKL-YRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~  119 (371)
                      -+||||. --|   |    |=.||+...=|-|. |..++       ++...++.++..-.--.-...-+|.++...|...
T Consensus         5 k~lkq~~-~p~---d----~~~el~~~rp~vk~~y~~~~-------~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E   69 (230)
T cd07625           5 KTLKQFA-PPY---D----EYTELAEFRPLVKSIYLTAQ-------DLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEE   69 (230)
T ss_pred             HhhhccC-cCC---C----CCHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4689997 233   2    44688877777774 44443       3344444444433322233336777777777765


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC--hhhh--hhhhhhhHHhhhhHHHHHHHHHH
Q 017467          120 NQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA--PLED--ARHLAQRYSRMRQEAETQAVEVS  195 (371)
Q Consensus       120 ~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~--~~e~--~R~L~~dy~r~Rq~~e~~~~ev~  195 (371)
                      +    ...||+|+..+|.....+++....-..+.-..|-|||..++.-.  .||.  -||+.     ||+=..++..=..
T Consensus        70 ~----~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~-----~re~~qAq~~~~~  140 (230)
T cd07625          70 T----HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKEALTNRHLL-----MRELIQAQQNTKS  140 (230)
T ss_pred             c----cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence            4    34699999999999999999999999999999999999887632  3442  44444     4444444444444


Q ss_pred             HHHH--hhccCC--CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH------hhH-hhHHHHHHHHHHHH
Q 017467          196 KRQQ--RVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR------LTF-QRLVAMVEGEKNYH  264 (371)
Q Consensus       196 rRq~--K~re~~--~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqr------lt~-~~L~~~veae~~yh  264 (371)
                      ||..  |.+-++  +||   |+-.|..-++|....-..+......-=..+.....+      -.+ .-|..++..+..||
T Consensus       141 K~~~~~rlk~s~~i~~~---KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~e  217 (230)
T cd07625         141 KQEAARRLKAKRDINPL---KVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYE  217 (230)
T ss_pred             HHHHHHHHhcCCCCChH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433  233222  455   777777777766555444433222211111111111      012 23667888888999


Q ss_pred             HHHHHHHHHh
Q 017467          265 LRIAAILGDV  274 (371)
Q Consensus       265 q~~~~IL~~L  274 (371)
                      ++....++.+
T Consensus       218 rk~l~~lE~~  227 (230)
T cd07625         218 RKKLSLLERI  227 (230)
T ss_pred             HHHHHHHHhc
Confidence            8888777654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

Probab=96.69  E-value=0.4  Score=45.20  Aligned_cols=178  Identities=15%  Similarity=0.227  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 017467           86 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  165 (371)
Q Consensus        86 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  165 (371)
                      ++++-++.+...=+--.+.-+.||+++..-|..-+      .+..|-..+|++++.+++==..|...++ -|+.-|.+++
T Consensus        20 ~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p------~l~~af~~~aet~k~l~kng~~Ll~al~-~f~s~l~T~~   92 (201)
T cd07660          20 SVLRLARALASQFYQMLQTQKALGDAFADLSQKSP------ELQEEFTYNAETQKLLCKNGETLLGALN-FFVSSLNTLV   92 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence            35555555555555444445589999999998754      4688888999999999987777777775 4677788888


Q ss_pred             hcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017467          166 TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ  245 (371)
Q Consensus       166 ~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qq  245 (371)
                      ++++ +|-..=...|+.-|=|+.+=..|++.-...-+   .++...+++.+..++++.|..+..|=+++.--|.-+++.-
T Consensus        93 ~kai-~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~---~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenr  168 (201)
T cd07660          93 NKTM-EDTLMTVKQYESARIEYDAYRNDLEALNLGPR---DAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENK  168 (201)
T ss_pred             Hhhc-cHHHHHHHHHHhhhHhHHHHhccHHHcccCCC---ccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            8765 33344445666666666665556543111111   1233456777777777777777777777777777776644


Q ss_pred             hHhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 017467          246 HRLTFQRLVAMVEGEKNYHLRIAAILGDV  274 (371)
Q Consensus       246 qrlt~~~L~~~veae~~yhq~~~~IL~~L  274 (371)
                      -++-..||.-|+.|.-.||..+.++|++.
T Consensus       169 v~vm~~QL~~f~~a~~ay~sgn~~~L~~~  197 (201)
T cd07660         169 VKVMHKQLLLFHNAISAYFSGNQKQLEQT  197 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            33334789999999999999999998864

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im

>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length

Probab=96.65  E-value=0.47  Score=45.23  Aligned_cols=163  Identities=17%  Similarity=0.282  Sum_probs=101.4

Q ss_pred             hhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHh
Q 017467          103 EAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSR  182 (371)
Q Consensus       103 E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r  182 (371)
                      +-+..|+..+.-|...-.     .++..+|-.|++....+.+-++..-.-+-..|+.||..+-+.=  ..+|-=-....+
T Consensus        46 Dk~D~lak~l~~yA~~E~-----~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~c--K~~r~elK~~~~  118 (219)
T PF06730_consen   46 DKGDELAKQLQDYANTEN-----PNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGTIC--KHARDELKKFNK  118 (219)
T ss_pred             hhhHHHHHHHHHHHhcCC-----ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHH
Confidence            344467777777876533     3466688999999999999999999999999999999987511  111110111111


Q ss_pred             hhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhh-HHHHHHHHH
Q 017467          183 MRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQR-LVAMVEGEK  261 (371)
Q Consensus       183 ~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~-L~~~veae~  261 (371)
                      .|..--.+...    ..|.|.. +|-+-..+-+|+..|+-..-......+.++..|..+|.|--+ .+.. +..||..|.
T Consensus       119 ar~kEikq~~~----Leklr~k-~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~-DlK~i~sdFv~iEM  192 (219)
T PF06730_consen  119 ARNKEIKQLKQ----LEKLRQK-NPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKLK-DLKKIFSDFVTIEM  192 (219)
T ss_pred             HHHHHHHHHHH----HHHHHcc-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            11111111111    1233321 233223466788877777766666667777777777762211 1333 557999999


Q ss_pred             HHHHHHHHHHHHhHHHH
Q 017467          262 NYHLRIAAILGDVEAEM  278 (371)
Q Consensus       262 ~yhq~~~~IL~~L~~~l  278 (371)
                      .||-.+.+++..-...+
T Consensus       193 ~fHaKALEv~T~a~q~i  209 (219)
T PF06730_consen  193 VFHAKALEVYTAAYQDI  209 (219)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999987655443

Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.

>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]

Probab=96.56  E-value=0.0032  Score=67.22  Aligned_cols=55  Identities=22%  Similarity=0.338  Sum_probs=43.6

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|.+.++.+++|.|.+||+|.++.-.+.-||-+.+  +...|+||+|||..+
T Consensus         9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen    9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence            4589999999999999999999999998765444444443  455699999999443

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=96.49  E-value=0.0015  Score=68.07  Aligned_cols=57  Identities=19%  Similarity=0.457  Sum_probs=50.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCE-EEEEEeCCCCeeEEEe--CCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDY-VVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDi-I~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~  359 (371)
                      ...+.++|+|.+..+.+|+|..||. ..+++..+..||..+.  .|..|++|+|||....
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~   70 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNR   70 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccc
Confidence            3578999999999999999999999 6778888899999874  6889999999998753

>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]

Probab=96.45  E-value=0.0015  Score=65.95  Aligned_cols=57  Identities=28%  Similarity=0.419  Sum_probs=51.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeeccC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i~~  360 (371)
                      ..-++++.|.|..++||-|..||.|.|-...++-|++|.  ++|+.|+||+.|+-++..
T Consensus       263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~  321 (482)
T KOG3775|consen  263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDG  321 (482)
T ss_pred             hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCC
Confidence            345889999999999999999999999988899999998  589999999999987754

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=96.40  E-value=0.87  Score=42.75  Aligned_cols=158  Identities=15%  Similarity=0.173  Sum_probs=89.0

Q ss_pred             hHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhH
Q 017467          107 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE  186 (371)
Q Consensus       107 ~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~  186 (371)
                      .+|.++.+-|.--.    +..++.++..+|++...+..........---.|.+||+-|+.-  ..-.|.+-.+=.+..+.
T Consensus        43 efa~~~~~L~~~E~----~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~--~~Svk~~~~~R~~~~~~  116 (216)
T cd07627          43 EFAETLEALSSLEL----SKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRS--IGSVRAAFAQRQKLWQY  116 (216)
T ss_pred             HHHHHHHHHHHhhc----chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            56666777676422    3479999999999999999888887777777888899888651  11122222222222333


Q ss_pred             HHHHHHHHHHHHH---hhccCC--Cc----ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH-hhH-hhHHH
Q 017467          187 AETQAVEVSKRQQ---RVREAP--NP----ENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR-LTF-QRLVA  255 (371)
Q Consensus       187 ~e~~~~ev~rRq~---K~re~~--~~----d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqr-lt~-~~L~~  255 (371)
                      ++....++.+++.   |.....  ++    ....+|+.++.+.+..+.....++..+...|...+.  .+ ..+ ..|..
T Consensus       117 ~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~--~r~~dfk~~l~~  194 (216)
T cd07627         117 WQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFER--ERVEDFRNSVEI  194 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            3333333333321   111000  01    112344555555555566666666656666655543  22 112 45777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 017467          256 MVEGEKNYHLRIAAILG  272 (371)
Q Consensus       256 ~veae~~yhq~~~~IL~  272 (371)
                      +++++..+++.+.++=+
T Consensus       195 ~~e~~ie~~k~~ie~We  211 (216)
T cd07627         195 YLESAIESQKELIELWE  211 (216)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888888887765433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes

Probab=96.17  E-value=1.2  Score=42.08  Aligned_cols=178  Identities=16%  Similarity=0.232  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 017467           85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL-PKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA  163 (371)
Q Consensus        85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l-~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~  163 (371)
                      +.+++.++.++..=+--...-+.||+.++--|..-+      .+ |.+...+|+|++.+++-...|...++- |+.-|.+
T Consensus        19 ~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~------~~a~~~f~~~~~a~r~~~k~g~~ll~~l~~-~~~~l~T   91 (203)
T cd00011          19 ESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDP------ELAGEEFGYNAEAQKLLCKNGETLLGAVNF-FVSSINT   91 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH
Confidence            457777777776666655555699999999998865      23 788899999999999999999888864 7777899


Q ss_pred             hhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcc---cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017467          164 MITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPE---NVAKLHAAEARMQELKANMAILGKEAAAALAA  240 (371)
Q Consensus       164 ~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d---~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~  240 (371)
                      +.++++- |-..=...|..-|-|+.+-..++..=    ...+.|+   -..|.+.+...+++.|+.+.-|-.+..-=|.-
T Consensus        92 ~~~kai~-DT~lTI~~ye~aR~EY~a~~l~~ke~----~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~l  166 (203)
T cd00011          92 LVTKAIE-DTLLTVKQYEAARLEYDAYRLDLKEL----SLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKF  166 (203)
T ss_pred             HHhhhcc-hHHHHHHHHHHHHHhHHHHHHHHHHh----cccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988764 33333445555555555544444211    0001111   12466666666666666666665555444554


Q ss_pred             HHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 017467          241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDV  274 (371)
Q Consensus       241 ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L  274 (371)
                      +++.--++-..+|..+..+...||..+..+|++.
T Consensus       167 L~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~  200 (203)
T cd00011         167 LEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQT  200 (203)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            5553333334689999999999999999988764

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=96.06  E-value=0.0022  Score=67.40  Aligned_cols=55  Identities=20%  Similarity=0.439  Sum_probs=46.1

Q ss_pred             eEEEEecCCCCCCCC-------CccCCCCCEEEEEEeCCCCeeEEEeC-----CeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEK-------ELSLGVGDYVVVRKVSPSGWSEGECK-----GKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~-------ELsf~~GDiI~Vl~~~d~GWweGe~~-----Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||+|..++       .|+|.+||++.|+++.|.+||.+...     +..|.+|+...++.
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer  281 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER  281 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence            468999999987655       68999999999999999999999853     46799999776653

>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]

Probab=96.03  E-value=0.0024  Score=68.25  Aligned_cols=55  Identities=25%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeeccC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i~~  360 (371)
                      .+.++|||.+.+..||+..+||++.|+.. .-+||.+.. .|+.||+|+|-+..+.+
T Consensus       502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~  557 (721)
T KOG3557|consen  502 WVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQP  557 (721)
T ss_pred             eeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCC
Confidence            68899999999999999999999998854 467999885 79999999998876654

>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6

Probab=95.83  E-value=1.8  Score=41.30  Aligned_cols=147  Identities=20%  Similarity=0.211  Sum_probs=88.8

Q ss_pred             hHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhH
Q 017467          107 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE  186 (371)
Q Consensus       107 ~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~  186 (371)
                      .+|.++.--|+-     +++.|++++..+|+..-.|.++......+---.|-|+|+-++.-  ..-++-+-++==|.=+.
T Consensus        63 ~fs~al~~L~~~-----E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~--~~A~K~~l~rR~ral~~  135 (219)
T cd07621          63 KISAALTQLATS-----EPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRD--TQAAKDLLYRRLRCLAN  135 (219)
T ss_pred             HHHHHHHHhhcc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            445555544442     44689999999999999998877777666666888999887751  11122222111111233


Q ss_pred             HHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhh-H-hhHHHHHHHHHHHH
Q 017467          187 AETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYH  264 (371)
Q Consensus       187 ~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt-~-~~L~~~veae~~yh  264 (371)
                      .+.-...+++++.|.         .++.+||.+.++....+..+++-+...|...+.  +|+. + ..|+.+.|.+..--
T Consensus       136 ~q~A~k~L~KaR~k~---------~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~--~Rv~~fk~~lve~aE~~ik~A  204 (219)
T cd07621         136 YENANKNLEKARAKN---------KDVHAAEAAQQEACEKFESMSESAKQELLDFKT--RRVAAFRKNLVELAELEIKHA  204 (219)
T ss_pred             HHHHHHHHHHhHhch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            445555555665542         366667777777777776676667777776665  4432 2 35777777776443


Q ss_pred             HHHHHHH
Q 017467          265 LRIAAIL  271 (371)
Q Consensus       265 q~~~~IL  271 (371)
                      +...++|
T Consensus       205 k~~~~~l  211 (219)
T cd07621         205 KAQIQLL  211 (219)
T ss_pred             HHHHHHH
Confidence            4444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain

>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]

Probab=95.71  E-value=0.0094  Score=68.76  Aligned_cols=198  Identities=18%  Similarity=0.160  Sum_probs=117.0

Q ss_pred             HHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC
Q 017467           89 KVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA  168 (371)
Q Consensus        89 r~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~  168 (371)
                      +.+-+.|++--|....++-=|.+|...|.-.-   ++         .-...+.+...|.+|-.                 
T Consensus       827 q~~~~~ia~he~ri~~i~~r~~~m~~~~~f~a---ed---------vk~~~~~L~~~~~slk~-----------------  877 (2399)
T KOG0040|consen  827 QALLAEIANHEPRIQEVTSRGNKMVEEGHFAA---ED---------VRSRLKSLNQNWESLKA-----------------  877 (2399)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHhccccc---HH---------HHHHHHHHHHHHHHHHH-----------------
Confidence            45667777788888877777777777665421   22         12222334444444332                 


Q ss_pred             hhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC--CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 017467          169 PLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQH  246 (371)
Q Consensus       169 ~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~--~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqq  246 (371)
                       ++.-|+.|-+-+.+-|++=+-+.|-+-.... +|.+  ++|.--+...|++.+.--++.+..++. -.+.|.++.+|  
T Consensus       878 -ka~~r~~dle~s~q~~qy~ad~~eae~w~~e-kEpi~~stdygKdedsa~allkkhea~~~dl~a-f~~~i~~lr~q--  952 (2399)
T KOG0040|consen  878 -KASQRRQDLEDSLQAQQYLADANEAESWMRE-KEPIVGSTDYGKDEDSAEALLKKHEALLSDLEA-FGDSIQALREQ--  952 (2399)
T ss_pred             -HHHhcccchhhHHHHHHHHHHHhhHHHHhhc-cCcccccccccchhhhHHHHHHHHHHHHHHHHH-HhHHHHHHHHH--
Confidence             2333455545555556655555554333221 1222  556555677777777666665433332 11112222111  


Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCCCCCCcccccceEEEEecCCCCCCCCCccCCCCC
Q 017467          247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD  326 (371)
Q Consensus       247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~ser~r~es~~pp~~~~s~s~~~~~~~arALydfea~~~~ELsf~~GD  326 (371)
                                       -..|              ++. . + |..       ..+..++.++|+|...++.+.+.+.||
T Consensus       953 -----------------a~~c--------------q~Q-~-t-pv~-------~~g~~~v~alyd~q~kSprev~mKkgD  991 (2399)
T KOG0040|consen  953 -----------------ANAC--------------RQQ-E-A-PVE-------DVGKECVLALYDYQEKSPREVTMKKGD  991 (2399)
T ss_pred             -----------------HHhh--------------hcc-C-C-chh-------hHHHHHHHHHHHHHhcCHHHHHHhhhh
Confidence                             1111              111 1 1 110       113346789999999999999999999


Q ss_pred             EEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          327 YVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       327 iI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      +++.+....-.||.++++.+.|++|..||+.+.+-
T Consensus       992 vltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  992 VLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence            99988888889999999999999999999987654

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=95.66  E-value=0.0095  Score=66.39  Aligned_cols=57  Identities=30%  Similarity=0.386  Sum_probs=47.1

Q ss_pred             eEEEEecCCCC------CCCCCccCCCCCEEEEEEeC-CCCeeEEEe-CCeeeEecCCceeeccC
Q 017467          304 FLAEAIHPFTA------ASEKELSLGVGDYVVVRKVS-PSGWSEGEC-KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       304 ~~arALydfea------~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~-~Gk~G~FPsnYVE~i~~  360 (371)
                      ..+.+.|+|.+      ..+.||.+..|++|.|.-.. .+|+++|+. .|+.|.+|+|||+.+.+
T Consensus       448 q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d  512 (1335)
T KOG3632|consen  448 QPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTD  512 (1335)
T ss_pred             ceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEecc
Confidence            35788898877      33468999999999998654 558999995 89999999999998754

>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p

Probab=95.60  E-value=1.6  Score=40.15  Aligned_cols=40  Identities=10%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      .|+.++-.+|..+..++...+.|...+..+|++||+.|+.
T Consensus        58 ~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~   97 (185)
T cd07628          58 EITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLH   97 (185)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4999999999999999999999999999999999998875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=95.39  E-value=1.3  Score=42.85  Aligned_cols=142  Identities=11%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             HhHHHhhhhc---cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhhh--h-hhhhhh
Q 017467          108 LSEDCCRYGA---ENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLED--A-RHLAQR  179 (371)
Q Consensus       108 l~e~~~kYg~---e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e~--~-R~L~~d  179 (371)
                      +.+....||.   .|+ +.+ ..++.+|-.+|.++..++..-+.+...+..+|++||+.|+.=  +++-.  - =.+..+
T Consensus        87 y~~~~~~fgk~~~lws-~~E-~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~  164 (243)
T cd07666          87 YFEELKEYGPIYTLWS-ASE-EELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAE  164 (243)
T ss_pred             HHHHHHHHHHHHHHHh-ccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555554   666 334 459999999999999999999999999999999999998752  12211  0 123334


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH-hhHHHHHH
Q 017467          180 YSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVE  258 (371)
Q Consensus       180 y~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~-~~L~~~ve  258 (371)
                      |+++++......               +|   + .++++.+.++...+...++....-|...+.+-.+ .+ +-+..+++
T Consensus       165 le~k~e~l~k~~---------------~d---r-~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~-D~k~~~~~yae  224 (243)
T cd07666         165 LDSKVEALANKK---------------AD---R-DLLKEEIEKLEDKVECANNALKADWERWKQNMQT-DLRSAFTDMAE  224 (243)
T ss_pred             HHHHHHHHHhhh---------------hh---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            444333322211               11   2 2334444444444333333344444433332111 12 35778999


Q ss_pred             HHHHHHHHHHHHH
Q 017467          259 GEKNYHLRIAAIL  271 (371)
Q Consensus       259 ae~~yhq~~~~IL  271 (371)
                      .+..|++++...-
T Consensus       225 ~~i~~~~~~~~~W  237 (243)
T cd07666         225 NNISYYEECLATW  237 (243)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998886643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=95.29  E-value=2.9  Score=40.16  Aligned_cols=97  Identities=16%  Similarity=0.185  Sum_probs=67.6

Q ss_pred             CCCCccceecHHHH--HHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhc-cCCCCCCCCc
Q 017467           51 YERSDVMVIDEVEM--QRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGA-ENNQNINENI  127 (371)
Q Consensus        51 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~-e~~~~~~~~~  127 (371)
                      |.-+|..+.|....  .-+++|-+||.++-.--.-.|+++-+..              .+|.++..-|. |.     ...
T Consensus        17 ~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~--------------efa~s~~~L~~~E~-----~~~   77 (234)
T cd07664          17 MNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTA--------------AFAKSAAMLGNSED-----HTA   77 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHcCcc-----cch
Confidence            44555655554432  2467788888777655555555554443              45555555565 32     246


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          128 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       128 l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      |++||..+|+....|......-....--.|-+||..++-
T Consensus        78 ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR  116 (234)
T cd07664          78 LSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIR  116 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence            999999999999999998888888888889999988874

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=94.96  E-value=0.004  Score=58.68  Aligned_cols=52  Identities=27%  Similarity=0.444  Sum_probs=45.5

Q ss_pred             EEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCceee
Q 017467          306 AEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEK  357 (371)
Q Consensus       306 arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~~Gk~G~FPsnYVE~  357 (371)
                      +.++++|.+...+||+|.+||.+.+++.. +.+|+..+..|..|++|.||.+.
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~   55 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM   55 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence            46789999999999999999999888654 44899999999999999999853

>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53

Probab=94.88  E-value=3.9  Score=39.39  Aligned_cols=176  Identities=15%  Similarity=0.228  Sum_probs=95.9

Q ss_pred             chhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017467           79 GTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVL  158 (371)
Q Consensus        79 ~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~  158 (371)
                      .|+.+|+    ++.|++.++.--.+...++||--.    .   +...-.||.||+.+.+.++++....+.+...+-.++|
T Consensus        30 ~G~~Y~k----al~a~~~a~~~y~dAl~Kige~A~----~---s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli   98 (232)
T cd07646          30 MGKNYEK----ALASVTFAAKGYFDALVKMGELAS----E---SQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELL   98 (232)
T ss_pred             HhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh----c---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555554    556777666655566555554322    1   1112359999999999999999999999999999999


Q ss_pred             hHHHHhhhcChhhhhhhhhhhHHhhhhHH-------HHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHH-HHHHHH
Q 017467          159 DPLRAMITGAPLEDARHLAQRYSRMRQEA-------ETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQEL-KANMAI  229 (371)
Q Consensus       159 ~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~-------e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~el-k~~m~~  229 (371)
                      .||..=+..    |.+.+..-.|+-..+.       |.-+.|+. +..|.+..+ |+   .+...-|.+.-+. -..-..
T Consensus        99 ~pLE~k~E~----D~k~i~a~~Kky~~e~k~k~~sleK~qseLK-KlRrKsqg~k~~---~ky~~ke~q~~~~~~~~q~e  170 (232)
T cd07646          99 TQLEQKVEL----DSRYLTAALKKYQTEHRSKGESLEKCQAELK-KLRKKSQGSKNP---QKYSDKELQYIEAISNKQGE  170 (232)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCCc---hhhHHHHHHHHHHHHHHHHH
Confidence            998776653    4444444444443333       44444432 222221111 21   1222122122211 111112


Q ss_pred             hhHHHHHHHHHH-HHHhhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467          230 LGKEAAAALAAI-EAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       230 lgkea~~am~~v-e~qqqrlt--~~~L~~~veae~~yhq~~~~IL~~  273 (371)
                      |......+.... -+.-.|+.  +.+-+++......||.....+|.+
T Consensus       171 le~f~~~~~k~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~  217 (232)
T cd07646         171 LENYVSDGYKTALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQ  217 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            233233333332 22234443  355666777778899888888765

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=94.74  E-value=0.86  Score=50.91  Aligned_cols=184  Identities=17%  Similarity=0.285  Sum_probs=113.2

Q ss_pred             ecHHHHHHH---HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHH
Q 017467           59 IDEVEMQRH---QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY  135 (371)
Q Consensus        59 ~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~  135 (371)
                      +|+.|...|   ..|+|++.+-.++...++++|-.-|-|..       +    -.+-..+|   +   .+...+-++..|
T Consensus        23 ~~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~-------~----~~d~~~~~---~---~~~~~~~~l~~f   85 (785)
T KOG0521|consen   23 LDVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGK-------G----LKDLFSLG---Q---DEEVISETLQKF   85 (785)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHH-------H----HHHHHHhc---c---CchhhhhHHHHH
Confidence            477777655   57888888888888888888877766531       1    12224444   2   234578889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHH
Q 017467          136 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLH  214 (371)
Q Consensus       136 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~  214 (371)
                      ..+..++......|...+...+..||..++.+|+.++ +-+...+++..++.+.-..-..+...+.| +. .++..+.|.
T Consensus        86 s~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v-~~~kk~f~ka~~~~d~a~~k~~~l~k~~~-~~~~~e~~~~l~  163 (785)
T KOG0521|consen   86 SKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEV-KELKKLFEKASEEYDLALVKYSRLPKKRR-SKVKTEVEEELA  163 (785)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhHHHHHHHhhHHHHHHHhhhhhhccc-cchhHHHHHHHH
Confidence            9999999999999999999999999999999999876 33344556666777555554433322222 21 334333455


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHH
Q 017467          215 AAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIA  268 (371)
Q Consensus       215 ~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~  268 (371)
                      .+..+|+-..--       ...+++.++.-.+---+.-+..+++|+..|+++-.
T Consensus       164 ~~r~~f~~~~~~-------y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~  210 (785)
T KOG0521|consen  164 AARRKFQLTALD-------YVLALNVLQAKKQFEILETLLGFMHAQINFFKQGE  210 (785)
T ss_pred             HHHHHHHHHHHH-------HHHhhhhhhcccchHHHHHHHHHHHhccchhcccH
Confidence            444444433222       22222222221111113456667777776665443

>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1

Probab=94.66  E-value=4.3  Score=38.87  Aligned_cols=178  Identities=11%  Similarity=0.131  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 017467           85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM  164 (371)
Q Consensus        85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~  164 (371)
                      |.|.+++-|++.++.--.+++-++||--.-    .+   ..-.||.+|+.+.+.++++.+..+.....+--.+|.||-.=
T Consensus        30 k~Y~KA~~a~~~A~~~y~dal~Kige~A~~----s~---~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k  102 (226)
T cd07645          30 KNYEKAVNAMVLAGKAYYDGVAKIGEIAAV----SP---VSKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERK  102 (226)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889998888888887777775543    11   12359999999999999999998888888888999998776


Q ss_pred             hhcChhhh---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHH
Q 017467          165 ITGAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEAR-MQELKANMAILGKEAAAALA  239 (371)
Q Consensus       165 ~~~~~~e~---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~K-l~elk~~m~~lgkea~~am~  239 (371)
                      +..|.+=.   -.+--..|+...-.+|....|+.+-+.| +..+ ||.   |-..=|.. ++.....-..|......+..
T Consensus       103 ~elD~kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRK-sqg~kn~~---kye~Ke~~~~e~~~~~q~el~~f~~~~~k  178 (226)
T cd07645         103 TDLDVKYMTATLKRYQTEHKNKLDSLEKSQADLKKIRRK-SQGRRNAS---KYEHKENEYLETVTSRQSDIQKFIADGCR  178 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554321   1122223444334446666665333323 2111 332   21111111 12222222333333444433


Q ss_pred             HHHH-HhhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467          240 AIEA-QQHRLT--FQRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       240 ~ve~-qqqrlt--~~~L~~~veae~~yhq~~~~IL~~  273 (371)
                      .+.. .-.|.+  +..-+++......||..+..+|.+
T Consensus       179 ~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~  215 (226)
T cd07645         179 EALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNS  215 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3222 234433  245566777777899888888765

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of

>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]

Probab=94.51  E-value=0.011  Score=64.18  Aligned_cols=58  Identities=22%  Similarity=0.483  Sum_probs=50.4

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEE--eCCeeeEecCCceeecc
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGE--CKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe--~~Gk~G~FPsnYVE~i~  359 (371)
                      ....|.++|.|++.+++++++.+|+++.+++.. .+||=+++  ++|..|+||.+|++.+.
T Consensus       577 ~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  577 PIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             CccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            345789999999999999999999999987654 67899998  68999999999998654

>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

Probab=94.37  E-value=4.5  Score=37.90  Aligned_cols=146  Identities=12%  Similarity=0.089  Sum_probs=79.0

Q ss_pred             HhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC--hhhh--hhhhhhhHHh
Q 017467          108 LSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA--PLED--ARHLAQRYSR  182 (371)
Q Consensus       108 l~e~~~kYg~e~~~-~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~--~~e~--~R~L~~dy~r  182 (371)
                      |+.+..-||.-... +..++.||.++-.+|.++..++..-+.+... ..+|++||+.|..=.  ++-.  -|.+. .   
T Consensus        47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~-q---  121 (201)
T cd07622          47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLFFADSLRAVCKKHELL-Q---  121 (201)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHH-H---
Confidence            34444445543221 2234579999999998888888766666655 489999999886421  1111  12222 1   


Q ss_pred             hhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH-hhHHHHHHHHH
Q 017467          183 MRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEK  261 (371)
Q Consensus       183 ~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~-~~L~~~veae~  261 (371)
                        .+.|.....+.++..               ..+...++.+........++..-+...+. +.+..+ .-|.++++.+.
T Consensus       122 --~~~e~~~~~L~~k~~---------------~l~~~ve~a~~~~e~f~~~~~~E~~rF~~-~K~~dlk~~l~~~A~~qi  183 (201)
T cd07622         122 --YDLEKAEDALANKKQ---------------QGEEAVKEAKDELNEFVKKALEDVERFKK-QKVRDLKEILISYAKLQI  183 (201)
T ss_pred             --HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence              112222222222211               13333344444433333334333333332 222223 45888999999


Q ss_pred             HHHHHHHHHHHHhHH
Q 017467          262 NYHLRIAAILGDVEA  276 (371)
Q Consensus       262 ~yhq~~~~IL~~L~~  276 (371)
                      .|.+.+.++-+.+..
T Consensus       184 ~~~~~~~~~W~~~~~  198 (201)
T cd07622         184 KLAKKGLQTWTNIKE  198 (201)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999887776554

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and

>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins

Probab=94.02  E-value=5  Score=37.75  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=37.2

Q ss_pred             hHhHHHhhhhc----cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 017467          107 KLSEDCCRYGA----ENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  165 (371)
Q Consensus       107 ~l~e~~~kYg~----e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  165 (371)
                      ++|..+..+|.    +.+  .+...|.+|+...|+++..|+++.++--..=-..|.|-|..+.
T Consensus        44 k~G~af~~L~~af~~d~~--~~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~  104 (199)
T cd07626          44 KIGQAFTSLGTAFELDET--PTSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYK  104 (199)
T ss_pred             HHHHHHHHHHHHHccCCC--ccchHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence            44554444443    333  2345799999999999999998877766655555555554443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=93.76  E-value=7.7  Score=42.17  Aligned_cols=29  Identities=7%  Similarity=0.145  Sum_probs=15.5

Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHhHHHHhh
Q 017467          252 RLVAMVEGEKNYH-------LRIAAILGDVEAEMVS  280 (371)
Q Consensus       252 ~L~~~veae~~yh-------q~~~~IL~~L~~~l~s  280 (371)
                      -|.+|+.....|+       +......++|+..++.
T Consensus       198 pllafl~slf~f~h~g~el~qDF~pfk~qlq~s~Qn  233 (812)
T KOG1451|consen  198 PLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQN  233 (812)
T ss_pred             HHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHH
Confidence            4566666665544       3333345566665554

>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5

Probab=93.43  E-value=7.5  Score=37.17  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=78.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhh----hhhhhhhhHHhhhhHHHHHHHHHHHHH
Q 017467          125 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLE----DARHLAQRYSRMRQEAETQAVEVSKRQ  198 (371)
Q Consensus       125 ~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e----~~R~L~~dy~r~Rq~~e~~~~ev~rRq  198 (371)
                      .+.|++|+..+|+..-.|.++......+---.|.|||+-++.  ++.++    +.|-|.        ..|.-...+++++
T Consensus        75 ~t~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~--------~~e~A~~~L~KaR  146 (218)
T cd07663          75 PTVIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALA--------DYENSNKALDKAR  146 (218)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence            346999999999999999998888888888889999988875  12222    222222        2333334455554


Q ss_pred             HhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhh-H-hhHHHHHHHHHHHHHHHHHHH
Q 017467          199 QRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAIL  271 (371)
Q Consensus       199 ~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt-~-~~L~~~veae~~yhq~~~~IL  271 (371)
                      .+.         .++.+||.+..+....+..+.+-+...|...+.  +|+. + ..|..+.|.+..--+.....|
T Consensus       147 ~k~---------kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~--~Rv~~Fk~~lve~~E~~ik~ak~~~~~~  210 (218)
T cd07663         147 LKS---------KDVKQAEAHQQECCQKFEKLSESAKQELISFKR--RRVAAFRKNLIEMTELEIKHAKNNVSLL  210 (218)
T ss_pred             hhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            442         244555555555555555555556666666554  4422 2 357777777764444444444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It

>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

Probab=93.04  E-value=8.5  Score=36.67  Aligned_cols=166  Identities=16%  Similarity=0.221  Sum_probs=107.7

Q ss_pred             HHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 017467           86 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  165 (371)
Q Consensus        86 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  165 (371)
                      -+++=++.+...=|--+..=..|||.+.--|.--+    ...+..|...+|++.+.|++-=..|...++ -|+.-|++++
T Consensus        20 ~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~----~p~l~eeF~~~ae~hR~l~k~G~~ll~ai~-~~~s~l~T~l   94 (215)
T cd07659          20 GLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREP----QPAASEAFTKFGEAHRSIEKFGIELLKTLK-PMLSDLGTYL   94 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----ChhHHHHHHHhHHHHHHHHHhHHHHHHHhH-HHHHHHHHHH
Confidence            35666666666666666666678888888888644    235888999999999999999999999987 4778899999


Q ss_pred             hcChhh---------hhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHH--------------HHHHHHHHH
Q 017467          166 TGAPLE---------DARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKL--------------HAAEARMQE  222 (371)
Q Consensus       166 ~~~~~e---------~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl--------------~~Ae~Kl~e  222 (371)
                      +++.-+         ++|   +.|+.-|-.++....|- ..-+. .+    +-.-++              +.|.+||+-
T Consensus        95 ~KaipDT~lTikkY~~ar---~EY~ayc~kvkEmd~ee-~~~~~-~~----e~l~rvetgnyeyrl~lRcrq~~r~kf~k  165 (215)
T cd07659          95 NKAIPDTKLTIKKYADVK---FEYLSYCLKVKEMDDEE-YSYAA-LD----EPLYRVETGNYEYRLILRCRQEARARFAK  165 (215)
T ss_pred             HhhCchHHHHHHHHHHHH---HHHHHHHHHHHHhcccc-ccccc-cc----CcHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            998632         233   34555555554432210 00000 00    101222              445556655


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHH
Q 017467          223 LKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG  272 (371)
Q Consensus       223 lk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~  272 (371)
                      +++-       ..-=|.-+|+.-=++-..||..|+.|.-.||..+.+++.
T Consensus       166 LR~D-------V~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~  208 (215)
T cd07659         166 LRQD-------VLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK  208 (215)
T ss_pred             HHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5553       444455555533333457899999999999999988865

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th

>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1

Probab=92.89  E-value=9.4  Score=36.79  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=57.4

Q ss_pred             HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467           68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE  147 (371)
Q Consensus        68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~  147 (371)
                      ++|-+||.++-+=-.-.|++.-+...|              |.++---|.-    .....|++||..+|+....|....+
T Consensus        36 ~qLk~L~k~~~~lv~~r~eLa~~~~eF--------------a~s~~~L~~~----E~~~~Ls~als~laev~~~i~~~~~   97 (234)
T cd07665          36 QRLRKLHAVVETLVNHRKELALNTALF--------------AKSLAMLGSS----EDNTALSRALSQLAEVEEKIEQLHQ   97 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHH
Confidence            567777776655555555555444433              3333333332    2235799999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHhhh
Q 017467          148 DFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       148 ~l~~~~~~~~~~PL~~~~~  166 (371)
                      .-....--+|-+||..++-
T Consensus        98 ~qa~qd~~~f~e~l~eYiR  116 (234)
T cd07665          98 EQANNDFFLLAELLADYIR  116 (234)
T ss_pred             HHHHHHHHHHhhhHHHHHH
Confidence            9999999999999988875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins

Probab=92.74  E-value=8.6  Score=36.01  Aligned_cols=174  Identities=14%  Similarity=0.088  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 017467           66 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE  145 (371)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~  145 (371)
                      -|.+|-++|..+-.--.-+|++.-+              ...+|.++..-|+.-.  +....|++++..+++..-.+.+.
T Consensus        16 l~~~lk~~~~~~~~lv~~rk~la~~--------------~~~fs~al~~L~~~E~--~~~~~l~~~l~~lse~~e~i~~~   79 (198)
T cd07630          16 LSANMKEAAEKFLKIVNTEQRLANA--------------LGHLSSSLQLCVGLDE--ASVVALNRLCTKLSEALEEAKEN   79 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcccc--cchHhHHHHHHHHHHHHHHHHHH
Confidence            3566666665554433334443332              2234444444444211  01117899999999999999998


Q ss_pred             HHHHHHHHHhhhhhHHHHhhh--cChhhh-hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHH
Q 017467          146 QEDFNRLLSSQVLDPLRAMIT--GAPLED-ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQE  222 (371)
Q Consensus       146 ~~~l~~~~~~~~~~PL~~~~~--~~~~e~-~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~e  222 (371)
                      .+....+---.|-+||+-+..  ++.++- .||.     +.-++++.-..+++|++.+.++  .+|  .+.+.|+.+|++
T Consensus        80 ~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~-----~~~~~~~~a~k~l~Kar~~k~~--~ae--~~~~~a~~~fe~  150 (198)
T cd07630          80 IEVVAGNNENTLGLTLDLYSRYSESEKDMLFRRT-----CKLIEFENASKALEKAKPQKKE--QAE--EAKKKAETEFEE  150 (198)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHhhHH--HHH--HHHHHHHHHHHH
Confidence            888888888899999988764  222221 1221     1122333334444443333211  122  344445555554


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhHhh-H-hhHHHHHHHHHHHHHHHHHHHHH
Q 017467          223 LKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       223 lk~~m~~lgkea~~am~~ve~qqqrlt-~-~~L~~~veae~~yhq~~~~IL~~  273 (371)
                      .-+.       +...|...+.  +|+. + ..|..+++.+..--..+.+++.+
T Consensus       151 iS~~-------~k~EL~rF~~--~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~  194 (198)
T cd07630         151 ISSL-------AKKELERFHR--QRVLELQSALVCYAESQIKNAKEAAAVLTK  194 (198)
T ss_pred             HHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4443       5555555443  3422 2 35777888887766666665543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=92.64  E-value=0.19  Score=36.38  Aligned_cols=36  Identities=33%  Similarity=0.585  Sum_probs=29.3

Q ss_pred             cCCCCCEEEEEEeCCCC-eeEE-EeCCeeeEecCCcee
Q 017467          321 SLGVGDYVVVRKVSPSG-WSEG-ECKGKAGWFPSANVE  356 (371)
Q Consensus       321 sf~~GDiI~Vl~~~d~G-WweG-e~~Gk~G~FPsnYVE  356 (371)
                      .+..|+.|.|+.....+ |+.. ..+|..||++..|++
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            46788999998776555 9999 579999999999985

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=92.28  E-value=11  Score=36.13  Aligned_cols=45  Identities=20%  Similarity=0.110  Sum_probs=39.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL  170 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~  170 (371)
                      ++|..++-.+-.....|++....|...|...+..||+.+..+-.+
T Consensus        56 Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k  100 (233)
T cd07649          56 GTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKK  100 (233)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368888888888889999999999999999999999999986443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2

Probab=91.38  E-value=13  Score=35.30  Aligned_cols=170  Identities=15%  Similarity=0.187  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 017467           85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA  163 (371)
Q Consensus        85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~-~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~  163 (371)
                      +.|.+++-|+..++.--.+++.++||--.    +.+    +| .||.+|+++.++++++-..-+.....+--.+|-||-.
T Consensus        30 k~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~----~s~----~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LEk  101 (215)
T cd07644          30 NNYLRAFHALSEAAEVYFSAIAKIGEQAL----QSL----TSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMDK  101 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56889999999998888888777766432    222    33 5999999999999888766666555555666666555


Q ss_pred             hhhcChh--hhhhhhhhhHHhhhhHH-HHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHH
Q 017467          164 MITGAPL--EDARHLAQRYSRMRQEA-ETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAI-LGKEAAAALA  239 (371)
Q Consensus       164 ~~~~~~~--e~~R~L~~dy~r~Rq~~-e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~-lgkea~~am~  239 (371)
                      =...|.+  .+.++=.+-=-|.|... |...+|..+ ..|.+. .|+-   +.+  | =++-+...|.. +...-..||.
T Consensus       102 k~elD~kyi~~s~KkYq~E~r~k~dsleK~~selkk-~rrk~q-kn~~---e~k--E-~~~~lq~~~~~f~~~~~k~Al~  173 (215)
T cd07644         102 NTKLDMQFIEDSRRVYELEYRHRAANLEKCMSELWR-MERQRD-RNVR---EMK--E-NVNRLRQSMQAFLKESQRAAEL  173 (215)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHhhc-CCch---hhH--H-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444433  11222111111223333 556565532 112111 0221   111  1 11111111111 1111222322


Q ss_pred             HHHHHhhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467          240 AIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       240 ~ve~qqqrlt--~~~L~~~veae~~yhq~~~~IL~~  273 (371)
                        | .-.|..  +.+-+++...-..||..+..+|.+
T Consensus       174 --e-ErRRy~Flvek~c~~~k~~~~yh~ka~~ll~~  206 (215)
T cd07644         174 --E-EKRRYRFLAEKHYLLNNTFLQFQSRARGMLQT  206 (215)
T ss_pred             --H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              1 223433  356677777778999999888865

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=90.61  E-value=0.23  Score=54.68  Aligned_cols=46  Identities=28%  Similarity=0.272  Sum_probs=38.3

Q ss_pred             CCCCCCCCCccCCCCCEEEEEEeCCC-CeeEEE--eCCeeeEecCCcee
Q 017467          311 PFTAASEKELSLGVGDYVVVRKVSPS-GWSEGE--CKGKAGWFPSANVE  356 (371)
Q Consensus       311 dfea~~~~ELsf~~GDiI~Vl~~~d~-GWweGe--~~Gk~G~FPsnYVE  356 (371)
                      +|+...++.|-|..||.|+|++.... -||.|.  ++++.|.||.+-|.
T Consensus       382 ~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  382 TYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            44457789999999999999986654 599996  58999999998877

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases

Probab=89.72  E-value=20  Score=34.47  Aligned_cols=65  Identities=20%  Similarity=0.294  Sum_probs=46.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC------hhhhhhhhhhhHHhhhhHHH
Q 017467          124 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA------PLEDARHLAQRYSRMRQEAE  188 (371)
Q Consensus       124 ~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~------~~e~~R~L~~dy~r~Rq~~e  188 (371)
                      .+|....+...+=.....++..+..+..++..++++||..|...-      ..+++..|.+.+++.-.+++
T Consensus        59 ~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~  129 (237)
T cd07657          59 QGSPISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVE  129 (237)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777777777777788999999999999999999999988722      12345555555554444433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=88.01  E-value=25  Score=33.58  Aligned_cols=42  Identities=14%  Similarity=0.281  Sum_probs=39.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG  167 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~  167 (371)
                      ++|..|...+......++.....|...|...+..||+.++..
T Consensus        58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~   99 (239)
T cd07658          58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDE   99 (239)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999998999999999999999999999999999999885

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]

Probab=87.97  E-value=30  Score=34.32  Aligned_cols=207  Identities=16%  Similarity=0.225  Sum_probs=139.7

Q ss_pred             hhhHHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhh
Q 017467           38 SFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCR  114 (371)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~k  114 (371)
                      +-|-++.+||-     ++-.|==|-|.|+-+-           ++-+|.   |++..++|-..=+--+|.-..|||.+--
T Consensus       108 tkQillEklGk-----~~rTVD~ElEaQie~L-----------rd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFad  171 (341)
T KOG3876|consen  108 TKQILLEKLGK-----GSRTVDLELEAQIEVL-----------RDTKRKYESVLALARAFSHHLTQMVETQHALGDSFAD  171 (341)
T ss_pred             HHHHHHHHhcC-----CccccCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34778888973     2345545778776532           122232   6777777777766667777788887755


Q ss_pred             hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHH
Q 017467          115 YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEV  194 (371)
Q Consensus       115 Yg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev  194 (371)
                      .....++      |-.-.-.-.++++.+.+--+.|+..|. -||--.++++++-+ ||--+-.+.|+.-|-|+.+-+.|+
T Consensus       172 Ls~K~~e------lq~eft~nseTqr~l~kngetLl~aln-fFIsSvnTl~nkTi-~DTL~Ti~qyEsARiEyDayR~Dl  243 (341)
T KOG3876|consen  172 LSQKSPE------LQEEFTYNSETQRLLGKNGETLLGALN-FFISSVNTLVNKTI-EDTLMTIKQYESARIEYDAYRTDL  243 (341)
T ss_pred             HhccCHH------HHHHhCcCHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhhhh-HHHHHHHHHhhhhhhhhhhhhhhH
Confidence            5443331      111111226888888888888888875 58889999999765 555666678888888888888887


Q ss_pred             HHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHH
Q 017467          195 SKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILG  272 (371)
Q Consensus       195 ~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~  272 (371)
                      +.---+-|+. .+-  ..+..|.++|++-|+.+.-|-.+++--|.-+|+.  ++.|  .||.-|-.|.-.|+.=.+..|+
T Consensus       244 e~~~l~P~~~-~t~--~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeEN--rIkVmh~QL~llhnAiaAYfsGNak~LE  318 (341)
T KOG3876|consen  244 EELTLGPRDA-LTK--NLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEEN--RIKVMHKQLELLHNAIAAYFSGNAKQLE  318 (341)
T ss_pred             HHhcCCcccc-ccc--cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            6543333322 222  4788899999999999999988888888877763  3333  5677777788888866655555


Q ss_pred             H
Q 017467          273 D  273 (371)
Q Consensus       273 ~  273 (371)
                      +
T Consensus       319 ~  319 (341)
T KOG3876|consen  319 Q  319 (341)
T ss_pred             H
Confidence            4

>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Probab=87.96  E-value=27  Score=33.87  Aligned_cols=128  Identities=14%  Similarity=0.165  Sum_probs=84.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhh-----hhhhhhhhHHhhhhHHHHHHHHHHH
Q 017467          124 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLE-----DARHLAQRYSRMRQEAETQAVEVSK  196 (371)
Q Consensus       124 ~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e-----~~R~L~~dy~r~Rq~~e~~~~ev~r  196 (371)
                      -...++..|-.|+.++.+.+..=++|...+.++|+++|+.|+.=  +++-     |-.++  ||+.+-   |..    ..
T Consensus       101 lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~--d~E~l~---E~l----~~  171 (240)
T cd07667         101 LEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQA--EYEAKL---EAV----AL  171 (240)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHH----HH
Confidence            34569999999999999999999999999999999999998752  1221     22333  344321   111    12


Q ss_pred             HHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH-hhHHHHHHHHHHHHHHHHHHHHH
Q 017467          197 RQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       197 Rq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~-~~L~~~veae~~yhq~~~~IL~~  273 (371)
                      |+.            +++.-+.+.+++...+...+.+...-+...+. +.+.-+ ..|..|.+.+..|++.+.++=+.
T Consensus       172 rre------------~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~-~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~  236 (240)
T cd07667         172 RKE------------ERPKVPTDVEKCQDRVECFNADLKADMERWQN-NKRQDFRQLLMGMADKNIQYYEKCLTAWES  236 (240)
T ss_pred             HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            323            33344566777777776666666666665544 222223 46888999999999998776543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=87.22  E-value=0.96  Score=33.39  Aligned_cols=35  Identities=31%  Similarity=0.495  Sum_probs=28.6

Q ss_pred             cCCCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCce
Q 017467          321 SLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANV  355 (371)
Q Consensus       321 sf~~GDiI~Vl~~~d~GWweGe~~-Gk~G~FPsnYV  355 (371)
                      .+..|+.+.++.....+|+..... |..||+|..++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            467899999987755599999875 99999987765

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=85.98  E-value=1.2  Score=36.82  Aligned_cols=43  Identities=16%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             CCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeec
Q 017467          316 SEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR  358 (371)
Q Consensus       316 ~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i  358 (371)
                      +...|.+++|+.+.|+...+.+-|-++. .|+.||+|.+++-..
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~   72 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL   72 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence            4568999999999999999999888885 899999999988544

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=85.82  E-value=32  Score=32.50  Aligned_cols=41  Identities=20%  Similarity=0.135  Sum_probs=36.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +++..|.-.+-.....++.....+..++.+++++||..++.
T Consensus        61 ~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~  101 (251)
T cd07653          61 FSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS  101 (251)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778888888888999999999999999999999999986

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.81  E-value=0.77  Score=43.34  Aligned_cols=38  Identities=21%  Similarity=0.553  Sum_probs=31.7

Q ss_pred             cCCCCCEEEEEEeCC-CCeeEEE-eCCeeeEecCCceeec
Q 017467          321 SLGVGDYVVVRKVSP-SGWSEGE-CKGKAGWFPSANVEKR  358 (371)
Q Consensus       321 sf~~GDiI~Vl~~~d-~GWweGe-~~Gk~G~FPsnYVE~i  358 (371)
                      ++..|+.+.|+...+ .||+..+ .+|+.||+|..|+...
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            578899999998765 6899988 4899999999998754

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=85.51  E-value=33  Score=32.40  Aligned_cols=41  Identities=12%  Similarity=0.161  Sum_probs=37.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 017467          127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG  167 (371)
Q Consensus       127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~  167 (371)
                      +|..|+..+=.....|++....|...|.+++.+||..+...
T Consensus        57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~   97 (236)
T cd07651          57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASS   97 (236)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48889888888889999999999999999999999998764

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p

Probab=84.90  E-value=32  Score=31.74  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=37.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      ..|+.++-.+|.++-...-.=+.|...+..+|.+||+.|+.
T Consensus        59 ~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~   99 (187)
T cd07629          59 SELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ   99 (187)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            35899999999999999999999999999999999999876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=82.88  E-value=48  Score=32.15  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=48.4

Q ss_pred             hHhHHHhhhhccCCC-CCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC------hhhhhhhhh
Q 017467          107 KLSEDCCRYGAENNQ-NINE--NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA------PLEDARHLA  177 (371)
Q Consensus       107 ~l~e~~~kYg~e~~~-~~~~--~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~------~~e~~R~L~  177 (371)
                      +|..-+.||..--.. +..+  .++=.|...+-..+..++..++.+..+|..+|++||..++..-      ...+|+++.
T Consensus        41 kL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~q  120 (253)
T cd07676          41 QLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQ  120 (253)
T ss_pred             HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666677544210 0011  1233455554455578899999999999999999999888721      122355555


Q ss_pred             hhHHhhhhHH
Q 017467          178 QRYSRMRQEA  187 (371)
Q Consensus       178 ~dy~r~Rq~~  187 (371)
                      ...++...++
T Consensus       121 k~~~~~~~~l  130 (253)
T cd07676         121 QHIETCWKQL  130 (253)
T ss_pred             HHHHHHHHHH
Confidence            5444444433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=82.60  E-value=2.4  Score=30.94  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=28.2

Q ss_pred             ccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCce
Q 017467          320 LSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV  355 (371)
Q Consensus       320 Lsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYV  355 (371)
                      ..+..|..+.|. ....+|...+.+|..||++.+.+
T Consensus        19 ~~l~~g~~v~v~-~~~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVI-ECRGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEE-EccCCeEEEEECCeEEeEEeeec
Confidence            356777777777 55789999999999999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins

Probab=82.44  E-value=47  Score=31.72  Aligned_cols=40  Identities=13%  Similarity=0.173  Sum_probs=34.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      ++|..|...+=.....|+..+..|..+|. ++.+||..|..
T Consensus        61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~-~~~~eL~~l~~  100 (234)
T cd07652          61 GSFSNAYHSSLEFHEKLADNGLRFAKALN-EMSDELSSLAK  100 (234)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            46888888888888999999999999995 79999998876

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that

>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6

Probab=81.19  E-value=53  Score=31.51  Aligned_cols=175  Identities=13%  Similarity=0.130  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 017467           66 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE  145 (371)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~  145 (371)
                      -|++|.+++.++-..-.-=|++.-.              ...+|.++..-|+.     +...|++++..+++....|.++
T Consensus        35 ~~~~Lk~~~~~~e~l~~~rk~la~~--------------~~~~s~sl~~L~~~-----e~t~L~~~l~~laev~eki~~l   95 (218)
T cd07662          35 YHNRVKDSSAKSDRMTRSHKSAADD--------------YNRIGSSLYTLGTQ-----DSTDICKFFLKVSELFDKTRKI   95 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhccc-----cchhHHHHHHHHHHHHHHHHHH
Confidence            5788888887775544433433221              12344444444543     2347999999999998888876


Q ss_pred             HHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHH
Q 017467          146 QEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKA  225 (371)
Q Consensus       146 ~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~  225 (371)
                      ......+=--.+.|-|+-+..  ...-++-|-++==|.=++.|.-...++|++.+-+|  ..+...++++|+.+|++.-+
T Consensus        96 ~~~~A~~e~l~L~e~L~~Y~r--~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~ke--v~~aE~~~~~a~~~Fe~IS~  171 (218)
T cd07662          96 EARVAADEDLKLSDLLKYYLR--ESQAAKDLLYRRSRSLVDYENANKALDKARAKNKD--VLQAETTQQLCCQKFEKISE  171 (218)
T ss_pred             HHHHhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHHHH
Confidence            665544433344555554432  01112222211111224445566666666666321  11112355555555555544


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhHhh-H-hhHHHHHHHHHHHHHHHHHHHH
Q 017467          226 NMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILG  272 (371)
Q Consensus       226 ~m~~lgkea~~am~~ve~qqqrlt-~-~~L~~~veae~~yhq~~~~IL~  272 (371)
                      .       +...|...+.  +|+. + ..|..++|.+..--+...+++.
T Consensus       172 ~-------aK~El~rF~~--~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~  211 (218)
T cd07662         172 S-------AKQELIDFKT--RRVAAFRKNLVELAELELKHAKGNLQLLQ  211 (218)
T ss_pred             H-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3       6666665554  4432 2 3577777766644444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	371
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		7e-06
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		8e-06
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		5e-05
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		5e-05
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		5e-05
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		6e-05
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		1e-04
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		1e-04
2a28_A	54	Atomic-Resolution Crystal Structure Of The Second S		1e-04
1uff_A	93	Solution Structure Of The First Sh3 Domain Of Human		2e-04
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		2e-04
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		4e-04
2dm1_A	73	Solution Structure Of The Second Sh3 Domain Of Huma		4e-04
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		5e-04
2xmf_A	60	Myosin 1e Sh3 Length = 60		6e-04
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		6e-04

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           +A++ + A +  EL+   GD ++V +  P+GW EGE  GK GW P+  V+
Sbjct: 7   KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           +A++ + A +  EL+   GD ++V +  P+GW EGE  GK GW P+  V+
Sbjct: 8   KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 13  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            + +A   F   +E ELS+  GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 11  LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVRE 64

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           ++NS+ + V     A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS 
Sbjct: 2   TDNSNNQLV---VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSN 58
Query: 354 NVEK 357
            V +
Sbjct: 59  YVRE 62

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 364
           A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+  VE RQ  P S
Sbjct: 20  AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 312 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3 Domain Of Yeast Bzz1 Determined From A Pseudomerohedrally Twinned Crystal Length = 54

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 307 EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSA 353
           EAI+ + A  + E+S+  GD + V+R    SGW+ GEC G  G FP++
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTS 51

>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Intersectin2 (Kiaa1256) Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 308 AIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 357
           A++PF A +  E+S   GD + V  + V   GW  G  +G  GWFP   VEK
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 61

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           L +A++ F A  + EL+L  GD V++ +    GW  G   GK G FP+A VE+
Sbjct: 9   LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEE 61

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 301 AVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 356
             +  A+A + F A    ELSL  GD + ++ K    GW  GE  G+ GWFPS  VE
Sbjct: 3   GTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59

>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Protein Vav-2 Length = 73

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 306 AEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 357
           A A + F A   +ELSL  GD V +  R     GW +GE  G+ GWFPS  VE+
Sbjct: 10  AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 63

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 298 SQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           S+  +   A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+  VE 
Sbjct: 5   SENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 64
Query: 358 RQ 359
           RQ
Sbjct: 65  RQ 66

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           +A++ + A    ELS    D + + K  PSGW  G  +GK G FP+  V K
Sbjct: 9   KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 359
           A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+  VE RQ
Sbjct: 12  AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	4e-16
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	1e-15
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	4e-15
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	9e-15
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	1e-14
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	8e-14
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	9e-14
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	3e-13
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	4e-13
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	4e-13
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	5e-13
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	5e-13
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	6e-13
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	7e-13
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	7e-13
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	8e-13
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	9e-13
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-12
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	1e-12
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	1e-12
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	1e-12
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	2e-12
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	2e-12
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	2e-12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-09
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	2e-12
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	3e-12
3u23_A	65	CD2-associated protein; structural genomics, struc	4e-12
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	4e-12
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	5e-12
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	5e-12
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	5e-12
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	5e-12
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	5e-12
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	5e-12
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	5e-12
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	5e-12
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	6e-12
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	6e-12
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	6e-12
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	7e-12
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	8e-12
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	8e-12
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	9e-12
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	1e-11
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	1e-11
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-11
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	1e-11
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	1e-11
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	2e-11
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	2e-11
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	2e-11
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	2e-11
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	2e-11
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	2e-11
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	2e-11
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-11
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	2e-11
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	3e-11
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	3e-11
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	3e-11
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	3e-11
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	3e-11
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	4e-11
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	4e-11
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-11
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	5e-11
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	6e-11
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	7e-11
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	7e-11
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	7e-11
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	7e-11
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	1e-10
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-10
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	3e-06
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	1e-10
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	2e-10
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	2e-10
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	2e-10
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	2e-10
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	4e-10
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-10
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	6e-10
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	7e-10
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	7e-10
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	7e-10
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	7e-10
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	7e-10
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	8e-10
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	8e-10
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	8e-10
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	1e-09
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	1e-09
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	1e-09
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	1e-09
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-09
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	3e-05
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-09
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	2e-09
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	2e-09
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	2e-09
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-09
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	4e-09
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	5e-09
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	5e-09
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	5e-09
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	6e-09
1wxb_A	68	Epidermal growth factor receptor pathway substrate	6e-09
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	6e-09
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-08
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-07
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	1e-08
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	2e-08
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	2e-08
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	2e-08
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	2e-08
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	2e-08
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-08
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	2e-08
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	4e-08
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	4e-08
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	4e-08
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	4e-08
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	5e-08
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	6e-08
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	6e-08
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	6e-08
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	7e-08
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	7e-08
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	7e-08
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	8e-08
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	8e-08
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	9e-08
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-07
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	1e-07
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	1e-07
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	1e-07
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	1e-07
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-07
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	3e-07
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	3e-07
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	3e-07
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	4e-07
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	5e-07
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	5e-07
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	6e-07
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	7e-07
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	8e-07
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-06
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	2e-06
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	2e-06
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	2e-06
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-06
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-05
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	4e-06
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	4e-06
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	5e-06
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	6e-06
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	6e-06
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	6e-06
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	7e-06
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	7e-06
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	7e-06
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	8e-06
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	8e-06
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	9e-06
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	1e-05
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-05
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	1e-05
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	2e-05
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	2e-05
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	2e-05
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-05
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	3e-05
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	3e-05
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	4e-05
1i07_A	60	Epidermal growth factor receptor kinase substrate	1e-04
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-04
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	2e-04
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	2e-04
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	2e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	8e-04

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 71.7 bits (176), Expect = 4e-16
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 346
           S+    P  ++    V+  A       A  +  L+L VGD V V +++ +G  EGE  G+
Sbjct: 2   SSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR 61

Query: 347 AGWFPSANVEK 357
            G FP  +V+ 
Sbjct: 62  KGLFPFTHVKI 72

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 70.6 bits (173), Expect = 1e-15
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 286 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG 345
            S  P     + +  A          + A  E ELSL  G  V+V +    GW  G   G
Sbjct: 5   SSGDPGERLYDLNMPAY-----VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNG 59

Query: 346 KAGWFPSANVEKRQRIPVSNVADE 369
           + GWFPS  V +    P+ +    
Sbjct: 60  QVGWFPSNYVTEEGDSPLGDHVGS 83

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 296 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           + S  +   + +A   F   +E ELS+  GD + V +V   GW EG   G+ GWFPS  V
Sbjct: 3   SGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

Query: 356 EK 357
            +
Sbjct: 63  RE 64

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 67.8 bits (166), Expect = 9e-15
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-----GWFPSANVE 356
           +A+    + A+  ++LSL  G  +++ K + SGW +GE + +      GWFP+++V+
Sbjct: 9   IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 305 LAEAIHPFT--AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            A+AI      A  +  L+L VGD V V +++ +G  EGE  G+ G FP  +V+ 
Sbjct: 3   FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 57

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 65.2 bits (159), Expect = 8e-14
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           S  SS    Y        +    + E+S   G  V V +   SGW         GW PS 
Sbjct: 2   SSGSSGATSYM---TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSH 58

Query: 354 NVEKRQRIP 362
            +   +   
Sbjct: 59  YLVLDENEQ 67

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 64.6 bits (158), Expect = 9e-14
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 296 NSSQKAVYFLAEAIHPFT--AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           N     +Y  A  I      A  +  L+L VG+ V V K++ SG  EGEC GK G FP  
Sbjct: 1   NLQNGPIY--ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFT 58

Query: 354 NVE 356
           +V 
Sbjct: 59  HVR 61

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 62.5 bits (153), Expect = 3e-13
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 307 EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 356
           EAI+ + A  + E+S+  GD + V+R    SGW+ GEC G  G FP++  +
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 63.6 bits (155), Expect = 4e-13
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 346
               +  ++   ++      +    +   ++ EL L VGD + V      GW EG   GK
Sbjct: 4   GGQQMGTNKRGERRRRR--CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGK 61

Query: 347 AGWFPSANVEK 357
            G FPS  +++
Sbjct: 62  TGMFPSNFIKE 72

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 62.6 bits (153), Expect = 4e-13
 Identities = 21/52 (40%), Positives = 26/52 (50%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
             A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 7   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 62.8 bits (153), Expect = 5e-13
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 346
             PP  P     +        AI+ +T   E ELS   G  + V K +  GW EG   G 
Sbjct: 7   GDPPWAPRSYLEK------VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGV 60

Query: 347 AGWFPSANVEK 357
            G FP   VE 
Sbjct: 61  TGLFPGNYVES 71

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 62.2 bits (152), Expect = 5e-13
 Identities = 21/52 (40%), Positives = 26/52 (50%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
             A   F   +E ELS   GD + V +V   GW EG   G+ GWFPS  V +
Sbjct: 9   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 62.8 bits (153), Expect = 6e-13
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 346
           S   +  +   ++K       A++ F A  + EL+   G+ ++V   S + W +GE    
Sbjct: 6   SGSEIQLNNKVARKVR-----ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG 60

Query: 347 AGWFPSANVEKRQRIPVSNVADEA 370
            G FPS  V     I     A   
Sbjct: 61  IGLFPSNFVTTNLNIETEAAAVSG 84

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 62.3 bits (152), Expect = 7e-13
 Identities = 18/68 (26%), Positives = 28/68 (41%)

Query: 297 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           SS  +       +  +      ELSL  G+ V V + + SGW       + GW P+  +E
Sbjct: 2   SSGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLE 61

Query: 357 KRQRIPVS 364
            +   P S
Sbjct: 62  AQNSGPSS 69

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 62.3 bits (152), Expect = 7e-13
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 296 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           +S        A A   +   + +ELS   G  +++ + +   W EG   G  G  P   +
Sbjct: 2   SSGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYI 61

Query: 356 E 356
            
Sbjct: 62  V 62

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 61.9 bits (151), Expect = 8e-13
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           S  SS +  Y     + P+T+ S+ E+    G  V V + +  GW      GK GW P++
Sbjct: 2   SSGSSGEEKYV---TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPAS 58

Query: 354 NVEK 357
            ++K
Sbjct: 59  YLKK 62

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 61.9 bits (151), Expect = 9e-13
 Identities = 21/51 (41%), Positives = 25/51 (49%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A A   F A + KEL L  GD V + K     W EGE  G+ G FP   +E
Sbjct: 10  ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 14/63 (22%), Positives = 18/63 (28%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           S  SS              +      L L  GD + +    P G   G    K G F   
Sbjct: 2   SSGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFI 61

Query: 354 NVE 356
            V+
Sbjct: 62  YVD 64

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 297 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           SS  +      A++ +TA +  EL L  GD + V      GW   E  G+ G+ P + +E
Sbjct: 2   SSGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLE 61

Query: 357 K 357
           K
Sbjct: 62  K 62

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 22/51 (43%), Positives = 26/51 (50%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A     F A S KEL+L  GD V + K     W EGE  G+ G FP+  VE
Sbjct: 4   ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A+A+  +   +  +L    GD +++R+     W +GE  G +G FP+++VE 
Sbjct: 10  AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            +A++ F A  + EL+L  GD V++ +    GW  G   GK G FP+A VE+
Sbjct: 10  CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEE 61

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 364
             A++ F   +E EL    GD + +       W EG   G +G+FP   VE    +P S
Sbjct: 10  CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS 68

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           S +S +  V   A A   +T  + +ELS   GD + + + + S W  GE  G  G  P  
Sbjct: 3   SGSSGEGVVE--AVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHK 60

Query: 354 NVEKRQRIP 362
            +       
Sbjct: 61  YITLPAGTE 69

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 297 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           S +  +     AI  +   S  E++L  GD V V + S SGW   + K K GW P++ +E
Sbjct: 5   SPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 19/72 (26%), Positives = 27/72 (37%)

Query: 286 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG 345
           E       +E+           AI  +TA    E+SL  G+ V V      GW       
Sbjct: 64  EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDD 123

Query: 346 KAGWFPSANVEK 357
             G+FPS  ++K
Sbjct: 124 VTGYFPSMYLQK 135

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 346
             P  +P  +          +A++ F   ++ EL    GD + +       W EG   G+
Sbjct: 3   MDPEFMPPLDQPS------CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQ 56

Query: 347 AGWFPSANVEKRQRIP 362
           +G+FP + V+    +P
Sbjct: 57  SGFFPLSYVQVLVPLP 72

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            +A++ + A +  EL+   GD ++V +  P+GW EGE  GK GW P+  V+ 
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQD 57

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            + +  +   +E EL L VGD + + +    GW  G    K G FPS  V++
Sbjct: 10  CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 59.9 bits (146), Expect = 4e-12
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
              ++ F   ++ EL    GD + +       W EG   G++G+FP   VE 
Sbjct: 6   CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 59.5 bits (145), Expect = 5e-12
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 358
           +  A++ F   +  EL    GD + +  +S + W +G  KG+ G  PS  V ++
Sbjct: 5   VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 59.5 bits (145), Expect = 5e-12
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A     + A  + EL++ VG+ +   +    GW EG+  G+ G FP   V +
Sbjct: 4   AIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE 55

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
             A++ F   +  EL    GD + +  +S + W +G  KG+ G  PS  V +
Sbjct: 10  FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            +    +   ++ EL L VGD + V      GW EG   GK G FPS  +++
Sbjct: 10  CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 61

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 60.1 bits (146), Expect = 5e-12
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           S +S    V   AEA+      + +EL+   GD + V   S   W  G+   + GWFP++
Sbjct: 3   SGSSGDSIVS--AEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPAS 60

Query: 354 NVEKRQRIP 362
            V       
Sbjct: 61  FVRLWVNQE 69

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 60.6 bits (147), Expect = 5e-12
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
             A++PF A +  E+S   GD   V  + V   GW  G  +G  GWFP   VEK
Sbjct: 8   YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 61

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 59.5 bits (145), Expect = 5e-12
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 357
               + + A  + EL++ VG+ +  V+K+   GW EGE  G+ G FP   V++
Sbjct: 4   YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 56

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKRQRIP 362
           AI  F    E EL L V D ++V   +   W E      G  G FP+    +  + P
Sbjct: 11  AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEP 67

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 60.1 bits (146), Expect = 6e-12
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 293 PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 352
            + +  +  +   A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+
Sbjct: 7   GTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPA 66

Query: 353 ANVEKRQRIPVS 364
             VE RQ  P S
Sbjct: 67  NYVELRQSGPSS 78

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 346
           S+    P+ +   + +     A++ + A +E ELS   G  + V       W +GE  G 
Sbjct: 23  SSERATPAFHPVCQVI-----AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV 77

Query: 347 AGWFPSANVEK 357
            G FPS  V+ 
Sbjct: 78  TGLFPSNYVKM 88

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 59.5 bits (145), Expect = 6e-12
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            EA+  + A   ++L    GD ++V       W EGE KGK G FP   VE 
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 59.1 bits (144), Expect = 7e-12
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 357
           AI  F    E EL L V D ++V   +   W E      G  G FP+    +
Sbjct: 8   AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 59.7 bits (145), Expect = 8e-12
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 290 PVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGECKGKA 347
                 +  + +    A  ++ + AA+  ELSL   + + V  V    S W  GE   + 
Sbjct: 4   GSSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQK 63

Query: 348 GWFPSANVEKRQRIPVS 364
           G  P   +E     P S
Sbjct: 64  GKVPITYLELLNSGPSS 80

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 59.6 bits (145), Expect = 8e-12
 Identities = 19/76 (25%), Positives = 31/76 (40%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 346
           +        +   +     AEA+  FT  S+ EL+   GD + +       W EG  +G 
Sbjct: 2   NHKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA 61

Query: 347 AGWFPSANVEKRQRIP 362
            G FP + V+  +  P
Sbjct: 62  TGIFPLSFVKILKDFP 77

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 58.7 bits (143), Expect = 9e-12
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A A   +   S +ELS   G  +++   +   W EG   G  G  P   + 
Sbjct: 9   AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSP-SGWSEGECKGKAGWFPSANVEK 357
           A A + F A   +ELSL  GD V +  ++    GW +GE  G+ GWFPS  VE+
Sbjct: 10  AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 63

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
            +A+  F      EL+   GD + +       W EG+   + G FPS  V 
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            + +  +   +E EL L VGD + + +    GW  G    K G FPS  V++
Sbjct: 4   CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 55

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            +A++ + A    ELS    D + + K  PSGW  G  +GK G FP+  V K
Sbjct: 8   CKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 57.9 bits (141), Expect = 2e-11
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
            EA++ F    + +L L  GD V + +     W +G C G+ G FP+  V+
Sbjct: 5   VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 12/52 (23%), Positives = 28/52 (53%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
             A++ F     ++L +  GD + + + S   W +G+ + + G+FP+  V++
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQR 61

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 283 QRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE 342
                    +  ++ ++K       AI+ F AA + EL+   G+ + V   S   W +GE
Sbjct: 2   GHHHHHHSHMNHQHEARKVR-----AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE 56

Query: 343 CKGKAGWFPSANVE 356
                G FPS  V 
Sbjct: 57  THQGIGLFPSNFVT 70

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 57.9 bits (141), Expect = 2e-11
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           AEA+  FT  S+ EL+   GD + +       W EG  +G  G FP + V+
Sbjct: 7   AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 346
                   E   +  +     A++ +   S +E+++  GD + +   +   W + E   +
Sbjct: 6   HHHHHGSDETGKELVL-----ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDR 60

Query: 347 AGWFPSANVEKRQRIP 362
            G+ P+A V+K     
Sbjct: 61  QGFVPAAYVKKLAAAW 76

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A+A+  F    + EL     D + +          GE  G  GWFP+  VE 
Sbjct: 10  AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 296 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSAN 354
           + S    +  A+A++   A  + ELS   G     V      GW EG   GK G  P   
Sbjct: 3   SGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENY 62

Query: 355 VEK 357
           VE 
Sbjct: 63  VEF 65

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            +A+  F    + EL    GD++ V   S   W +G C G+ G FP   V  
Sbjct: 5   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           S  SS +A       +  F   +++EL +  G+ V V K     W+     G+ G  P  
Sbjct: 2   SSGSSGEAH----RVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCN 57

Query: 354 NVEK 357
            +E 
Sbjct: 58  YLEP 61

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A A+  +  +    L     D + +  K   + W  G+  GK G FP  +VE 
Sbjct: 13  ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFP 351
           S +S  K+  +  + I P+ A ++ EL++  GD   ++ +     GW EGE  G+ G FP
Sbjct: 1   SMDSRTKSKDY-CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFP 59

Query: 352 SANVEK 357
              V+ 
Sbjct: 60  DNFVKL 65

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           L   ++ +   S +EL++  GD + +   +   W + E  G+ G+ P+A ++K
Sbjct: 8   LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
              + P+T  +E EL+   G+  +++ ++   +GW +GE  GK G FP     +
Sbjct: 9   CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEK 357
            E    F A    E++L   D V+V +    GW  GE    G+ GWFP      
Sbjct: 20  VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDFARF 72

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 297 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS--GWSEGECKGKAGWFPSAN 354
           SS  +      A+  +   +   LS   GD + +  V+    GW  G   G++G FP+  
Sbjct: 2   SSGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADI 61

Query: 355 VE 356
           V+
Sbjct: 62  VQ 63

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            + I P+ A ++ EL++  GD   ++ +     GW EGE  G+ G FP   V+ 
Sbjct: 10  CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           L  A++ +   S +E+++  GD + +   +   W + E   + G+ P+A V+K
Sbjct: 7   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 59

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 59.3 bits (143), Expect = 5e-11
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP 362
           A+A + F A    ELSL  GD + ++ K    GW  GE  G+ GWFPS  VE+     
Sbjct: 8   AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEY 65

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 56.5 bits (137), Expect = 6e-11
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 359
           A A++ + AA + E+S    D +   ++   GW  G CKG+ G FP+  VE RQ
Sbjct: 12  AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 56.4 bits (137), Expect = 7e-11
 Identities = 19/55 (34%), Positives = 23/55 (41%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
           A A++ F A  E EL    G+ V V   S   W  G    K G FP+  V    R
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMMR 58

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 297 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSP--SGWSEGECKGKAGWFPSA 353
           SS  +     +A++ +   ++ ELS   G  + ++ K +    G+ EGE  G+ G FPS 
Sbjct: 2   SSGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSV 61

Query: 354 NVEKRQRIPVS 364
            VE+    P S
Sbjct: 62  LVEELSSGPSS 72

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPS 352
           S  +S  ++   A A + F A ++ ELS   GD + V+ +     W + E  GK G+ P 
Sbjct: 2   SRRASVGSME--AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPK 59

Query: 353 ANVE 356
             +E
Sbjct: 60  NYIE 63

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            + I P+ A ++ EL++  GD   ++ +     GW EGE  G+ G FP   V+ 
Sbjct: 5   CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGW----SEGECKGKAGWFPSANVEKRQRIPV 363
           +I  +    E+      G  + V + +P+GW         K   GW PS  +EK+   P 
Sbjct: 15  SIADYEG-DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPS 73

Query: 364 S 364
           S
Sbjct: 74  S 74

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 24/77 (31%), Positives = 31/77 (40%)

Query: 280 SEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS 339
            E           P  N     +Y          A  +  L+L VG+ V V K++ SG  
Sbjct: 216 PEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQW 275

Query: 340 EGECKGKAGWFPSANVE 356
           EGEC GK G FP  +V 
Sbjct: 276 EGECNGKRGHFPFTHVR 292

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 357
            A+  F    E++L    GD + +R      W   E  +GK G  P   VEK
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 189

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 305 LAEAIHPFTA-ASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEK 357
           + EA + F    S  EL L  GD + + +  PSGWS G+     K GW P+A ++ 
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
             AI  + A  E +LS   G+ +++ + + + W  GE  G  G+ P+ +V K
Sbjct: 10  FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGK 61

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
             A++ F A  + EL+   G+ + V   S + W +GE     G FPS  V 
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 289 PPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPS---GWSEGECK 344
                SE    +  +    A++ F A +  ELS+     + ++     +    W   E  
Sbjct: 3   SGSSGSEAEGNQVYF----AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN 58

Query: 345 GKAGWFPSANVEKRQRIPVS 364
           GK G+ PS  + K +  P S
Sbjct: 59  GKKGYVPSNYIRKTESGPSS 78

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECK 344
           S    + + N   +       A++ F      +L+   GD   V+ +  S   W EG+ +
Sbjct: 6   SGHERVGNLNQPIEVT-----ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLR 60

Query: 345 GKAGWFPSANVEK 357
           G+ G FP+  V  
Sbjct: 61  GQTGIFPANYVTM 73

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 357
           A++ +   +E EL L  GD V V +    GW  G  +   K G FP   V  
Sbjct: 12  AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 353
           S +S  + +   A+A+  +TA  +  L+    D + V +     W  GE  G  GWFP +
Sbjct: 3   SGSSGVENLK--AQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKS 59

Query: 354 NVE 356
            V+
Sbjct: 60  YVK 62

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS----GWSEGECK--GKA 347
                + A +   + I+P+T  ++ EL L  GD++ +  +  +    GW  G     G +
Sbjct: 7   GSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCS 66

Query: 348 GWFPSANVEKRQRIPV 363
           G  P   + K      
Sbjct: 67  GLLPENYITKADECST 82

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 54.5 bits (131), Expect = 7e-10
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 286 ESAPPVIPSENSSQKAVY-FLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGEC 343
            + P           A++ +    + P   A+E+EL    G  + V       G+  GE 
Sbjct: 7   GTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET 66

Query: 344 KGKAGWFPSANVEK 357
             + G  P   V +
Sbjct: 67  CARLGLIPCNMVSE 80

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 55.5 bits (133), Expect = 7e-10
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 283 QRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE 342
           + + S+     S +S  K  +    AI+ F  +   +LSL +GD V +++     W  G 
Sbjct: 41  EGRGSSGSSGSSGSSGDKERH--GVAIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGY 97

Query: 343 C---KGKAGWFPSANVEKRQ 359
               K   G FP + +  ++
Sbjct: 98  LIKHKMLQGIFPKSFIHIKE 117

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 294 SENSSQKAVYFLAEAIHPFTAA-------SEKELSLGVGDYV-VVRKVSPSGWSEGECKG 345
           S +S ++ V     A++ +           E EL+   GD + V  ++   G+  GE  G
Sbjct: 3   SGSSGRRMV-----ALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNG 57

Query: 346 KAGWFPSANVEK 357
           + G  PS  +E+
Sbjct: 58  QKGLVPSNFLEE 69

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSPS--GWSEGECKGKAGWFPSANVEK 357
           LA+A++   A S  ELS   GD + V+ + +    GW      G+ G  P   ++ 
Sbjct: 5   LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 297 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           SS  +      A++P+++    +L+   G+ ++V +     W  G    ++G FPS  V+
Sbjct: 2   SSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWTGSIGDRSGIFPSNYVK 60

Query: 357 KRQRIPVS 364
            +   P S
Sbjct: 61  PKDSGPSS 68

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 53.8 bits (130), Expect = 8e-10
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAG-WFPSANVEK 357
            +A+  + A  E EL+      +   +    GW  G+  GK   WFPS  VE+
Sbjct: 9   VKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 53.5 bits (129), Expect = 8e-10
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 306 AEAIHPFTAASEK-ELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVE 356
            + I P TA S K  LS   GD + ++      GW  GE       GWFPS+  +
Sbjct: 9   VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 53.8 bits (130), Expect = 8e-10
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFP 351
           S  SS         A+H ++A   +EL L  G+ + V      GW +G     G+ G FP
Sbjct: 2   SSGSSGNMF----VALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFP 57

Query: 352 SANVEKRQRIP 362
           S  V       
Sbjct: 58  SDYVIPVSGPS 68

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 19/57 (33%), Positives = 28/57 (49%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP 362
           AEA+  FT  S+ EL+   GD + +       W EG  +G  G FP + V+  +  P
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFP 233

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 20/52 (38%), Positives = 24/52 (46%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A     + A  E ELSL  G  V V +    GW  G   G+ GWFPS  V +
Sbjct: 4   AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLE 55

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-GWFPSANVEK 357
            +A++ + A    EL+   G  +      P GW +G+   +   +FPS  VE 
Sbjct: 10  VKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVED 62

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 300 KAVY-FLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            A   +            +  L+L  GD V V   +   G+  GE  G  G  P+  ++ 
Sbjct: 11  IAALDYDPGDGQM-GGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDH 69

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 57.7 bits (138), Expect = 1e-09
 Identities = 22/112 (19%), Positives = 37/112 (33%)

Query: 245 QHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYF 304
             R +                  A      +               + P  ++    V+ 
Sbjct: 181 LVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFA 240

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
            A       A  +  L+L VGD V V +++ +G  EGE  G+ G FP  +V+
Sbjct: 241 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 310 HPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQRIP 362
           + F     ++L    G+ +V+ +     W     K G+ G  P   VEK  R  
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSS 185

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 306 AEAIHPFTAASEK-ELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVE 356
            + I P TA + K  LS   GD + ++      GW  GE       GWFPS+  +
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYV-VVRKVSP--SGWSEGECKGKAGWFPSANVEK 357
           LA A++        EL+   GD + ++ +  P   GW +    G+ G  P+  ++ 
Sbjct: 9   LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 286 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK- 344
            S  P         +AV     A + F    E ELS   G+++ + +     W EG    
Sbjct: 5   SSGKPPTYQVLEYGEAV-----AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITG 59

Query: 345 -GKAGWFPSANVEKRQRIPVSNVADEA 370
            G+ G FP++ V+  +   +    D  
Sbjct: 60  TGRQGIFPASYVQVSREPRLRLCDDSG 86

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 10/54 (18%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSE--GECKGKAGWFPSANVE 356
            + ++ +    + E+++  GD + +V + + SGW++   +  G+ G  P+  + 
Sbjct: 4   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAG-WFPSANVEK 357
            +A+  + A  E EL+      +   +    GW  G+  GK   WFPS  VE+
Sbjct: 6   VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE 58

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG---KAGWF 350
           S +S  K      + I+   A ++ EL+   G+ ++V       W  G  +G   + G F
Sbjct: 3   SGSSGNKVRR--VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVF 60

Query: 351 PSANVEK 357
           P + V  
Sbjct: 61  PVSFVHI 67

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 51.8 bits (124), Expect = 5e-09
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 14/84 (16%)

Query: 280 SEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSPSGW 338
           S       +  ++P              A+  F    +   L++  GD + V +  P G 
Sbjct: 2   SSHHHHHHSSGLVPR-------GSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGR 54

Query: 339 SEGECKG------KAGWFPSANVE 356
            +G          + G+FP   VE
Sbjct: 55  WKGHIHESQRGTDRIGYFPPGIVE 78

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 51.0 bits (123), Expect = 5e-09
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A A++ F      +L    GD   ++ +  S + W  G   G+ G FP+  VE
Sbjct: 6   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 51.0 bits (123), Expect = 5e-09
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDY-VVVRKVSPSGWSEGECK-GKAGWFPSANVEK 357
             A++ +    + ELS   GD    + +    GW  G    G+ G +P+  VE 
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 17/90 (18%), Positives = 25/90 (27%)

Query: 280 SEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS 339
                       +             AEA+       ++EL    GD + V   +   W 
Sbjct: 7   HHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWW 66

Query: 340 EGECKGKAGWFPSANVEKRQRIPVSNVADE 369
            G      GWFP++ V  R         D 
Sbjct: 67  WGRVADGEGWFPASFVRLRVNQDEPADDDA 96

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
             + ++ FTA +  ELS+   + + V +     W      G+AG+ P   + +
Sbjct: 9   YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGE 61

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGE-CK 344
           S+       N            ++ + A+   EL++   + + V+       W +     
Sbjct: 2   SSGSSGTLRNYPLTCK-----VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV 56

Query: 345 GKAGWFPSANVEK 357
           G+ G+ P   ++ 
Sbjct: 57  GQVGYVPEKYLQF 69

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 14/103 (13%), Positives = 30/103 (29%)

Query: 254 VAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFT 313
           V +     N      A    + +     ++   ++      E   +              
Sbjct: 200 VQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPN 259

Query: 314 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A    +L +  G  V+V +   +G  + E  G+ G  P   + 
Sbjct: 260 AYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLR 302

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQ 359
                 FT   E +L    G+ + +   +   W E     G  G  P+  V+ + 
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQM 204

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 308 AIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A++ F A+ +  LS+  G+ + V+       W E + K   GW PSA +  
Sbjct: 10  ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITP 60

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG--KAGWFPSANVE 356
           A A   F   ++ E+S   G+ + + +     W EG   G  + G FP   V+
Sbjct: 10  AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 306 AEAIHPFTA-ASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 357
            EA + F    S  EL L  GD V + +  PSGWS  +     K GW P+A +  
Sbjct: 5   FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTP 59

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVE 356
           A A++ F   ++ EL L  GD V +      GW   E     K G  P   V 
Sbjct: 4   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 357
             A+  F    E++L    GD + +R      W   E  +GK G  P   VEK
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 357
             A+  F    E++L    GD + +R      W   E  +GK G  P   VEK
Sbjct: 6   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG--KAGWFPSANVE 356
           A A   F   ++ E+S   G+ + + +     W EG   G  + G FP   V+
Sbjct: 9   AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 293 PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD--YVVVRKVSP--SGWSEGECKGKA- 347
            +  +S +  + +A A + F A S++E+S   GD   + +++  P   GW      G+  
Sbjct: 7   GTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTT 66

Query: 348 GWFPSANVE 356
           G  P+  V+
Sbjct: 67  GLIPANYVK 75

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 286 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPS----GWSE 340
           +     +  ++        +  A+  + AA ++EL+L  GD V V+ +        GW  
Sbjct: 12  DLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWT 71

Query: 341 GECK-GKAGWFPSANVE 356
           G+   G+ G FPS  V 
Sbjct: 72  GQLPSGRVGVFPSNYVA 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 42/297 (14%), Positives = 83/297 (27%), Gaps = 79/297 (26%)

Query: 1   MESLRRQASKLKEQVAKQQQLCIAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVID 60
           ++ L  Q        +      I ++I  I  E              +  YE   ++V+ 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQAELRRL--------LKSKPYENC-LLVLL 251

Query: 61  EVEMQRHQQLEKLYRSTRGTKDFQ-------RDLVKVAEVFTAIGYKHI---EAGTKLSE 110
            V+  +               +         R   +V +  +A    HI        L+ 
Sbjct: 252 NVQNAKA--WNAF--------NLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 111 DCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLD--PLRAMITGA 168
           D      E      +++L K             + Q+     L  +VL   P R  I   
Sbjct: 301 D------EV-----KSLLLKYLDC---------RPQD-----LPREVLTTNPRRLSIIAE 335

Query: 169 PLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPN--------PENVAKLHAAEARM 220
            + D       +  +  +  T  +E S       E           P +    H     +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILL 392

Query: 221 QELKAN------MAILGKEAAAALAAIEAQQHRLT----FQRLVAMVEGEKNYHLRI 267
             +  +      M ++ K    +L   + ++  ++    +  L   +E E   H  I
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 44/321 (13%), Positives = 82/321 (25%), Gaps = 93/321 (28%)

Query: 57  MVIDEVEMQRHQQ------LEKLYRS--TRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKL 108
           M  +  E Q   +       +    +   +  +D  + ++   E+   I  K   +GT  
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 109 SEDC-CRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSS---QVLDPLRAM 164
                     E  Q   E +L                 + ++  L+S    +   P  +M
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVL-----------------RINYKFLMSPIKTEQRQP--SM 107

Query: 165 ITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK 224
           +T           + Y   R          +K    V      +   KL  A   + EL+
Sbjct: 108 MT-----------RMYIEQRDRLYNDNQVFAKYN--V---SRLQPYLKLRQA---LLELR 148

Query: 225 AN-------MAILGKE--AAAALAAIEAQQHR------LTF---QRLVAMVEGEKNYHLR 266
                    +   GK   A     + + Q         L          ++E  +    +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 267 IAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD 326
           I            + K R  S            +    L    +           L    
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSI---------QAELRRLLKSKPYE--------NCL---- 247

Query: 327 YVVVRKV-SPSGWS--EGECK 344
            +V+  V +   W+     CK
Sbjct: 248 -LVLLNVQNAKAWNAFNLSCK 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 58/222 (26%)

Query: 9   SKLKEQVAKQQQLCI----AIKID--DILNEFNTFSFQAVIKQFSASGYERSDVMV---- 58
           + +   +     L +     IK D   ++N+ + +S   V KQ   S      + +    
Sbjct: 385 AHIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIYLELKV 437

Query: 59  -IDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAE---VFTAIGYKHIEA---------- 104
            ++  E   H+ +   Y   +       DL+        ++ IG+ H++           
Sbjct: 438 KLEN-EYALHRSIVDHYNIPK--TFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLF 493

Query: 105 ----------GTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLS 154
                       K+  D     A N      N L +    Y   + ++      + RL++
Sbjct: 494 RMVFLDFRFLEQKIRHDST---AWNASGSILNTLQQLK-FY---KPYICDNDPKYERLVN 546

Query: 155 SQVLDPLR---AMITGAPLEDARHLA--QRYSRMRQEAETQA 191
           + +LD L      +  +   D   +A       + +EA  Q 
Sbjct: 547 A-ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            + ++ F A + +EL++  G+ + V   S   W      G++G+ PS  +E 
Sbjct: 10  MQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEP 61

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEK 357
             A++ +TA    EL++  GD + V       W  G   KG+ G+FP+ +V  
Sbjct: 9   VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 17/78 (21%)

Query: 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP---------------SGWSEG--ECKGK 346
           F   A++PF     ++L L  GD +VV + +                 GW  G  E   +
Sbjct: 12  FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQ 71

Query: 347 AGWFPSANVEKRQRIPVS 364
            G FP   VE    + ++
Sbjct: 72  RGDFPGTYVEFLGPVALA 89

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 288 APPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGE-CK 344
           +       N     V  + + ++PF++ +E+EL+   G+ + V  +  +   W + +  +
Sbjct: 2   SSGSSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR 61

Query: 345 GKAGWFPSANVEKRQRIPVSNVADEA 370
           G+ G  P   V      P  + A   
Sbjct: 62  GQVGLVPKNYVVVLSDGPALHPAHSG 87

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 357
             A++ ++A  E E+S   GDY+V  +    GW  G  +  G+ G  P+  +E 
Sbjct: 9   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 49.7 bits (118), Expect = 6e-08
 Identities = 22/101 (21%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 272 GDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVR 331
           G V                             F  +A H +TA    EL L  GD V+V 
Sbjct: 13  GLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVI 72

Query: 332 KVS-----PSGWSEG----------ECKGKAGWFPSANVEK 357
                     GW  G          E +   G FP    E+
Sbjct: 73  PFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER 113

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 293 PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEG-ECKGKAGWFP 351
              ++ ++ +     A+  FTA    +L+   G+ ++V +  P GW    + KG  G  P
Sbjct: 5   HKWSTGEEYI-----AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVP 59

Query: 352 SANVEK 357
              +E 
Sbjct: 60  RTYLEP 65

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 306 AEAIHPFTAA-SEKELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVEK 357
            +AI    A  +   LS   GD + ++   +  GW  GE +     GWFP +    
Sbjct: 10  VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A  + P++A    E+++  GD + +   +   W + E   + G+ P+A V+K
Sbjct: 3   APPLPPYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 53

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 48.3 bits (115), Expect = 7e-08
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 314 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A   +E+++  GD + +   +   W + E   + G+ P+A V+K
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 45

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVE 356
           A A++ F   ++ EL L  GD V +      GW   E +   K G  P   V 
Sbjct: 8   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 48.7 bits (116), Expect = 8e-08
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 287 SAPPVIPSENSSQKAVYFLA----EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEG 341
           S       +  S K    +A              E EL L  G Y+ V   +   G+ EG
Sbjct: 3   SGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEG 62

Query: 342 E-CKGKAGWFPSANVEK 357
           E   G+ G  PS  V+ 
Sbjct: 63  ELLDGQRGLVPSNFVDF 79

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVE 356
           A  ++ F A    EL+  VG+ + +       W   +     G  G  P   V 
Sbjct: 8   AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVS 61

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVE 356
           A A + + AA + EL+    D ++  +     W  GE +  G  G FPS  V 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 10/79 (12%), Positives = 20/79 (25%), Gaps = 8/79 (10%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD-YVVVRKVSPSGWSEGECK- 344
           S            + +          T     EL+   GD   ++       W   +   
Sbjct: 6   SGRMPTRRWAPGTQCI-----TKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHT 60

Query: 345 -GKAGWFPSANVEKRQRIP 362
            G+ G   +  + +R    
Sbjct: 61  SGQEGLLAAGALRERSGPS 79

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 294 SENSSQKAVYFLAEAIHPFTA-ASEKELSLGVGDYV-VVRKVSPSGWSEGE-CKGKAGWF 350
           S  SS  A    A  ++ F A     EL++  G+ + V       GW EG+  KG+ G  
Sbjct: 2   SSGSSGMATK--ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLV 59

Query: 351 PSANVE 356
           P+  VE
Sbjct: 60  PTDYVE 65

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP 362
            + ++PF++ +E+EL+   G+ + V  +  +   W + +  +G+ G  P   V      P
Sbjct: 9   VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP 68

Query: 363 VSN 365
             +
Sbjct: 69  ALH 71

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CK 344
           S    + +   +   ++    A++ + A +E +LS   G+   +   S   W E      
Sbjct: 2   SMTGTLRTRGGTGVTLF---VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTT 58

Query: 345 GKAGWFPSANVEK 357
           G+ G+ PS  V  
Sbjct: 59  GETGYIPSNYVAP 71

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 298 SQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG-----KAGWFPS 352
           S+  V F   A  P+ +  E +L+      ++V  V  + W  GE +        G FP 
Sbjct: 2   SEPEVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPK 61

Query: 353 ANVE 356
           + V 
Sbjct: 62  SFVA 65

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 284 RKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC 343
           +K   P    +  S Q+    L  A++ +     +EL+L   +   +   S   W   + 
Sbjct: 1   KKPLPPTPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD 60

Query: 344 K-GKAGWFPSANVEKR 358
           K G  G+ PS+ + ++
Sbjct: 61  KNGHEGYAPSSYLVEK 76

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 319 ELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNVADEAY 371
           E+++  GD + +   +   W + E   + G+ P+A V+K        +    Y
Sbjct: 5   EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALY 57

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD-YVVVRKVSPSGWSEG-ECK 344
           S   V  S  +       +  A++ + A + ++LS   G+ + ++       W       
Sbjct: 11  SFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIAT 70

Query: 345 GKAGWFPSANVEKRQRIP 362
           GK+G+ PS  V     I 
Sbjct: 71  GKSGYIPSNYVVPADSIQ 88

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 292 IPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-----KGK 346
           + S + +     ++   +  F + +++ELS   GD   V +     W             
Sbjct: 1   MVSRDQAHLGPKYVG--LWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVA 58

Query: 347 AGWFPSANVEKRQ 359
            G+ P   + +R+
Sbjct: 59  QGYVPHNYLAERE 71

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWF 350
           S +S ++       AI P+T   +  E+S   GD  +V      GW         + G  
Sbjct: 3   SGSSGRRVR-----AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLI 57

Query: 351 PSANVEK 357
               VE+
Sbjct: 58  VEDLVEE 64

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQRI 361
           A++ + A +E +LS   G+   +   S   W E      G+ G+ PS  +    R+
Sbjct: 10  ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL 65

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGD-YVVVRKVSPSGWSEGECK-GKAGWFP 351
           S   +         A + F   +E++L    GD   +V       W + + K G+ G  P
Sbjct: 2   SAIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIP 61

Query: 352 SANVEKRQRI 361
           +  V+KR+ +
Sbjct: 62  ANYVQKREGV 71

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 48.2 bits (114), Expect = 6e-07
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--- 343
           S    +     + K  +    AI+ F  +   +LSL +GD V +++     W  G     
Sbjct: 3   SGSSGMAPWRKADKERH--GVAIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKH 59

Query: 344 KGKAGWFPSANVEKRQRIPVSNVADE 369
           K   G FP + +  ++         E
Sbjct: 60  KMLQGIFPKSFIHIKEVTVEKRRNTE 85

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 293 PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGE-CKGKAGWF 350
            S +S    V     AI+ F  +SE  +S+  G+ + ++ +    GW+     +G  G+ 
Sbjct: 2   SSGSSGGHCV-----AIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYV 56

Query: 351 PSANVEKRQ 359
           P++ +    
Sbjct: 57  PTSYLRVTS 65

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 306 AEAIHPFTAASE--KELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A+A++P+ A  +   E+S    + + V  +    W      G+ G  PS  V+ 
Sbjct: 8   AKALYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQL 61

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVE 356
           A  ++ F A  + EL +  G+ + +       W   +     G  G  P + V 
Sbjct: 6   AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQRI 361
           A++ + A    +LS   G+   + +  P  W E      G+ G+ PS  V     I
Sbjct: 11  ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI 66

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 281 EKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWS 339
             Q K+     +P     Q+  Y+    I P   A    L L  GD V + K      W 
Sbjct: 1   RAQDKKRNELGLPKMEVFQE--YY---GIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWW 55

Query: 340 EG--ECKGKAGWFPSANVE 356
           EG      + GWFP   V 
Sbjct: 56  EGRNTATNEVGWFPCNRVH 74

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Length = 224

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 34/223 (15%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 68  QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENI 127
            Q+E L    R TK     ++++    TA  Y  ++    L +       ++ +      
Sbjct: 11  LQIELL----RETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPE------ 60

Query: 128 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA 187
           L +      + +K + K  E     ++   +  +  ++T   +ED     ++Y   R E 
Sbjct: 61  LQEEFGYNAETQKLLCKNGETLLGAVNF-FVSSINTLVTKT-MEDTLMTVKQYEAARLEY 118

Query: 188 ETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR 247
           +    ++ +     R+A       +L +A+A  Q  +     L  + A  L  +E  + +
Sbjct: 119 DAYRTDLEELSLGPRDA---GTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIK 175

Query: 248 LTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPP 290
           +  ++L+        Y       L     +   + +   +  P
Sbjct: 176 VMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKP 218

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 308 AIHPFTAASEKELSLGVGD-YVVVRKVSPSGWSEGECKGKAGWFPS 352
           A + F A ++ ELS   GD   V+ +     W + E  GK G+ P 
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPK 50

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
               +A+  F    + EL    GD++ V   S   W +G C G+ G FP   V    R
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGW---------SEGECKGKAGWFPSANVEKR 358
           A+  + A + ++LS   GD + V   S  GW           G  +   G+ PS  V + 
Sbjct: 12  ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAED 71

Query: 359 QRI 361
              
Sbjct: 72  SGP 74

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 283 QRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE 342
                    +       + V  +A     +TA  ++EL +   + + +   S + W    
Sbjct: 13  DYNSLKKGSLVKNLHMTEEVIVIA--KWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRN 70

Query: 343 CKGKAGWFPSANVEKR 358
              + G+ PS  VE++
Sbjct: 71  AANRTGYVPSNYVERK 86

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 17/78 (21%)

Query: 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP---------------SGWSEG--ECKGK 346
           +   A++ +    E+++ L +GD + V K S                 GW  G  E  G+
Sbjct: 6   YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 65

Query: 347 AGWFPSANVEKRQRIPVS 364
            G FP   VE   R  +S
Sbjct: 66  RGDFPGTYVEYIGRKKIS 83

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 47.1 bits (110), Expect = 6e-06
 Identities = 36/315 (11%), Positives = 94/315 (29%), Gaps = 9/315 (2%)

Query: 51  YERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSE 110
             ++D  +  E   +   ++EK  +    TK+     +K  +  T    +++E   ++ E
Sbjct: 175 NSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP---QYMENMEQVFE 231

Query: 111 DCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL 170
            C ++  +  +   E +L     +        +    D  + + +               
Sbjct: 232 QCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHG 291

Query: 171 EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAIL 230
                   ++     +         K++          N     +  ++        +  
Sbjct: 292 PGMAMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNP 351

Query: 231 GKEAAAALAAIEAQQHRLTFQRLVAMVEGEKN----YHLRIAAILGDVEAEMVSEKQRKE 286
            + A +  +    +    T   +    + +      Y    +      + E  +     +
Sbjct: 352 AQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSSTD 411

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECK- 344
           +     P ++ +         A++ +      ELS   GD +  +      GW +G    
Sbjct: 412 ANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDN 471

Query: 345 GKAGWFPSANVEKRQ 359
           G+ G +P+  VE  Q
Sbjct: 472 GQVGLYPANYVEAIQ 486

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 359
              ++ +TA ++ EL+   G  + V       W +GE  G+ G FPS  V+   
Sbjct: 5   VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTT 58

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 307 EAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGE--CKGKAGWFPSANVE 356
             I P   A    L L  GD V + K      W EG      + GWFP   V 
Sbjct: 14  YGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-G 345
                 P     +  V     A++ +     +EL+L   +   +   S   W   + + G
Sbjct: 7   GEDNRRPLWEPEETVV----IALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNG 62

Query: 346 KAGWFPSANVEKRQ 359
             G+ PS+ + ++ 
Sbjct: 63  HEGYVPSSYLVEKS 76

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQ 359
           A++ +   +  +L L  GD   + + S   W     K G+ G+ PS  V + +
Sbjct: 13  ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 46.8 bits (110), Expect = 7e-06
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 291 VIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAG 348
            +               AI+     +  E+ +  GD + V      G+S+G  +  G+ G
Sbjct: 430 SLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTG 489

Query: 349 WFPSANVEKRQRI 361
            +PS  V ++   
Sbjct: 490 LYPSYKVREKIET 502

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 42.4 bits (100), Expect = 8e-06
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 308 AIHPFTAASEK-ELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 357
           AI P+T   +  E+S   GD  +V      GW         + G      VE+
Sbjct: 10  AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGECK--GKAGWFPSANVEK 357
               + F A S+ EL++  GD V +     S  W   +    GK+G  P+  +E 
Sbjct: 5   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 45.5 bits (106), Expect = 9e-06
 Identities = 23/104 (22%), Positives = 29/104 (27%), Gaps = 18/104 (17%)

Query: 274 VEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKV 333
           V  E                          F  +A H +TA    EL L  GD V+V   
Sbjct: 113 VVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPF 172

Query: 334 SP-----SGWSEG----------ECKGKAGWFPSANVEKRQRIP 362
                   GW  G          + +   G FP    E   R+P
Sbjct: 173 QNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTE---RVP 213

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 6/77 (7%)

Query: 286 ESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGW-SEGECK 344
            S P   P    S          +  + +          G+ + V       W +     
Sbjct: 5   SSGPLPNPEGLDSDFLA-----VLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLST 59

Query: 345 GKAGWFPSANVEKRQRI 361
           G+  + P   V +    
Sbjct: 60  GRESYIPGICVARVSGP 76

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 305 LAEAIHPFTAASEKELSLGVGD-YVVVRKVSPSGW-------SEGECKGKAGWFPSANVE 356
           L  A++ +   S +E+++  GD   ++   +   W         G+   + G+ P+A V+
Sbjct: 3   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62

Query: 357 K 357
           K
Sbjct: 63  K 63

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAAS-EKELSLGVGDYVVV-----RKVSPSGWSE 340
            + P+ PS+    +A+Y        F   + E E++L  GD + +          S W +
Sbjct: 5   GSEPIDPSKLEFARALY-------DFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57

Query: 341 GECK-GKAGWFPSANVEKRQR 360
              K G  G+ P   +E  +R
Sbjct: 58  VRTKNGNIGYIPYNYIEIIKR 78

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 297 SSQKAVYFLAEAIHPFTAAS-EKELSLGVGD-YVVVRKVSP----SGWSEGECK-GKAGW 349
           S     +F A A++ F   + E E++L  GD   ++ K  P    S W +   K G  G+
Sbjct: 2   SHHHHHHF-ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGY 60

Query: 350 FPSANVE 356
            P   +E
Sbjct: 61  IPYNYIE 67

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-- 344
           S  P I    S    V     A++ + A   ++LS   GD +VV + S   W +      
Sbjct: 13  SNTPGIREAGSEDIIV----VALYDYEAIHHEDLSFQKGDQMVVLEESGEWW-KARSLAT 67

Query: 345 GKAGWFPSANVEKRQ 359
            K G+ PS  V +  
Sbjct: 68  RKEGYIPSNYVARVD 82

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAAS-EKELSLGVGDYVVV-----RKVSPSGWSE 340
            + P+ PS+    +A+Y        F   + E E++L  GD + +          S W +
Sbjct: 5   GSEPIDPSKLEFARALY-------DFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57

Query: 341 GECK-GKAGWFPSANVEKRQRIPVSNVADE 369
              K G  G+ P   +E  +R       D+
Sbjct: 58  VRTKNGNIGYIPYNYIEIIKRRKKIEHVDD 87

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQ 359
           +  A++ F A    +L L  G   ++ + +   W     K G  G+ PS  V  ++
Sbjct: 4   IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGECK--GKAGWFPSANVEKRQ 359
               + F A S+ EL++  GD V +     S  W   +    GK+G  P+  +E  +
Sbjct: 9   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 352
                + F A +  ELS+   D + V   S   W   +  G+ G+ P 
Sbjct: 10  WVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPY 57

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRI 361
                A+  F    E++L    GD + +R      W   E  +GK G  P   VEK +  
Sbjct: 136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA 195

Query: 362 PVS 364
             S
Sbjct: 196 SAS 198

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI 361
            A++ + F A +  ELS+   D + +       W      G +G+ P+  ++  +  
Sbjct: 3   YAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRTP 59

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 283 QRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE 342
             K           + +K +  +      FT   E +L    G+ + +   +   W E  
Sbjct: 98  HFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEAR 157

Query: 343 -CKGKAGWFPSANVE 356
              G  G  P+  V+
Sbjct: 158 NALGTTGLVPANYVQ 172

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 359
           A   +TA  ++EL +   + + +   S + W       + G+ PS  VE++ 
Sbjct: 9   AKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKL 60

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI 361
           +  A   + A  E+EL +   + + +   S S W       K G+ PS  VE++   
Sbjct: 9   VVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKNSA 65

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 273 DVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD-YVVVR 331
           D E + +SE  R  S   ++   + +   ++    A++ F A+ +  LS+  G+   V+ 
Sbjct: 16  DFEPQGLSEAARWNSKENLLAGPSENDPNLF---VALYDFVASGDNTLSITKGEKLRVLG 72

Query: 332 KVSPSGWSEGECKGKAGWFPSANVEKRQRI 361
                 W E + K   GW PS  +     +
Sbjct: 73  YNHNGEWCEAQTKNGQGWVPSNYITPVNSL 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	99.84
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	99.82
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.6
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.6
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.58
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.55
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.55
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.55
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.54
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.53
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.53
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.53
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.53
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.53
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.52
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.52
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.52
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.52
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.52
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.52
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.52
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.52
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.52
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.52
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.52
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.51
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.51
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.51
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.51
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.51
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.5
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.5
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.5
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.5
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.5
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.5
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.5
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.5
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.5
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.49
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.49
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.49
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.49
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.49
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.49
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.49
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.49
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.49
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.49
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.49
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.49
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.49
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.48
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.48
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.48
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.48
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.48
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.48
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.48
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.48
3u23_A	65	CD2-associated protein; structural genomics, struc	99.48
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.48
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.48
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.47
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.47
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.47
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.47
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.47
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.47
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.47
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.47
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.47
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.47
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.46
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.46
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.46
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.46
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.46
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.46
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.46
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.46
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.46
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.45
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.45
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.45
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.45
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.45
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.45
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.45
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.45
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.44
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.44
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.44
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.44
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.44
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.44
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.44
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.44
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.44
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.44
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.44
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.43
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.43
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.43
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.43
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.43
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.43
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.43
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.43
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.43
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.43
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.43
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.43
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.43
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.43
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.43
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.43
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.43
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.43
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.43
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.43
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.43
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.42
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.42
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.42
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.42
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.42
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.42
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.42
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.42
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.42
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.42
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.42
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.4
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.4
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.4
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.4
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.4
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.39
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.39
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	99.39
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.39
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.39
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.39
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.38
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.38
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.38
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.38
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.37
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	99.37
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.37
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.37
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.36
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.36
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.35
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.35
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.35
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.35
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.35
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.35
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.34
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.33
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.33
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.33
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.33
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.33
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.32
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.32
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	99.3
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.3
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.29
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.25
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.24
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.23
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.22
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.21
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.21
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.17
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.17
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.16
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.15
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.12
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.12
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.09
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.08
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.06
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	99.06
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.04
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.03
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.99
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	98.98
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.51
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.96
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	98.95
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.95
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.94
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.93
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.86
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.37
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.83
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	98.83
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.81
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	98.8
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	98.71
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.7
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.7
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.58
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.5
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.46
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.38
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.35
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.31
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.13
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.1
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.07
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.06
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	98.02
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.94
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	97.86
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.73
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.65
2ykt_A	253	Brain-specific angiogenesis inhibitor 1-associate	97.6
2d1l_A	253	Metastasis suppressor protein 1; IRSP53, actin bin	97.33
1i4d_A	224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	97.13
3ok8_A	222	Brain-specific angiogenesis inhibitor 1-associate	96.92
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	95.72
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	95.11
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	94.2
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	94.14
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	94.01
3g9g_A	287	Suppressor of yeast profilin deletion; SYP1, BAR d	93.89
2kt8_A	76	Probable surface protein; SH3 family, structural g	93.0
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	92.43
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	92.24
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	91.62
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	91.05
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	89.95
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	88.91
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	88.13
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	87.88
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	85.49

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=99.84  E-value=9.7e-20  Score=170.96  Aligned_cols=155  Identities=19%  Similarity=0.335  Sum_probs=132.5

Q ss_pred             cCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh----
Q 017467           97 IGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED----  172 (371)
Q Consensus        97 ~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~----  172 (371)
                      ++||+++.  .||++|..+|.++|   .++.||.||..||+|+++|++.+..|+..+.++|++||+.++..+++++    
T Consensus        68 ~~~~~~~~--~L~~~m~~~~~~l~---~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~r  142 (240)
T 2z0v_A           68 TGYPQTEG--LLGDCMLKYGKELG---EDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHL  142 (240)
T ss_dssp             CSSCCHHH--HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHH
T ss_pred             CCCCCcHH--HHHHHHHHHHhhcC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999988  69999999999999   7899999999999999999999999999999999999999999998764    


Q ss_pred             ----hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhH
Q 017467          173 ----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ-QHR  247 (371)
Q Consensus       173 ----~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~q-qqr  247 (371)
                          .+|||||+.|             .|..|     .++  ++|+.|+.+|+++++.       +...|..+-+- ...
T Consensus       143 Kkle~~rLd~D~ak-------------~k~~k-----~~e--eEl~~A~~~fe~~~e~-------~~~~m~~~~~~~~e~  195 (240)
T 2z0v_A          143 KKLEGRRLDYDYKK-------------KRVGK-----IPD--EEVRQAVEKFEESKEL-------AERSMFNFLENDVEQ  195 (240)
T ss_dssp             HHHHHHHHHHHHHH-------------TTTTS-----SCH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHSTHHH
T ss_pred             HHHHHHHHHHHHHH-------------HHhcc-----ccH--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCcHHH
Confidence                7788888777             33323     134  7999999999999998       77788876442 334


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 017467          248 LTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRK  285 (371)
Q Consensus       248 lt~~~L~~~veae~~yhq~~~~IL~~L~~~l~ser~r~  285 (371)
                        +..|.+||++|+.||+++.++|.+|...+......+
T Consensus       196 --l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~~~  231 (240)
T 2z0v_A          196 --VSQLAVFIEAALDYHRQSTEILQELQSKLQMRISAA  231 (240)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              678999999999999999999999999987654333

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=99.82  E-value=6.6e-19  Score=166.63  Aligned_cols=150  Identities=23%  Similarity=0.391  Sum_probs=127.8

Q ss_pred             CcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh-----
Q 017467           98 GYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED-----  172 (371)
Q Consensus        98 ~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~-----  172 (371)
                      +||+.+.  .||++|..+|.++|   ++++||.||..||+++++|++.+..++..+.++|++||+.++.++++++     
T Consensus        85 ~~p~~~~--~L~~~m~~~~~~l~---~~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rk  159 (256)
T 1zww_A           85 GYPQAEA--LLAEAMLKFGRELG---DDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLK  159 (256)
T ss_dssp             --CCHHH--HHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCCcHH--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899987  69999999999999   7899999999999999999999999999999999999999999888764     


Q ss_pred             ---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHh
Q 017467          173 ---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRL  248 (371)
Q Consensus       173 ---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqqrl  248 (371)
                         .+|||||+.|             .|..|.     ++  ++|+.|+.+|++.++.       +...|..+-+ .... 
T Consensus       160 kl~~~rLdyD~~k-------------~k~~k~-----~e--eEle~A~~~fe~~~e~-------~~~~m~~l~~~e~e~-  211 (256)
T 1zww_A          160 KLEGRRLDFGYKK-------------KRQGKI-----PD--EELRQALEKFDESKEI-------AESSMFNLLEMDIEQ-  211 (256)
T ss_dssp             HHHHHHHHHHHHH-------------HTTTTS-----CH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHTTHHH-
T ss_pred             HHHHHHHHHHHHH-------------HHhccc-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCcHHH-
Confidence               6777777766             333332     34  7999999999999987       8888887644 2333 


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 017467          249 TFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSE  281 (371)
Q Consensus       249 t~~~L~~~veae~~yhq~~~~IL~~L~~~l~se  281 (371)
                       +..|.+|+++|+.||+++.++|.+|...+...
T Consensus       212 -~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~  243 (256)
T 1zww_A          212 -VSQLSALVQAQLEYHKQAVQILQQVTVRLEER  243 (256)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             58899999999999999999999999988754

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.60  E-value=7.6e-16  Score=116.07  Aligned_cols=56  Identities=29%  Similarity=0.621  Sum_probs=51.5

Q ss_pred             ceEEEEecCCCCCCCCC-ccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKE-LSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~E-Lsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i  358 (371)
                      ...|+|+|||.++.++| |+|++||+|.|+++.++|||.|++ +|+.||||+|||+.+
T Consensus         3 g~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             SCEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CCEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            35699999999999887 999999999999999999999997 799999999999864

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.60  E-value=2.6e-15  Score=116.34  Aligned_cols=63  Identities=25%  Similarity=0.220  Sum_probs=57.9

Q ss_pred             cceEEEEecCCCCC--CCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          302 VYFLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       302 ~~~~arALydfea~--~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ....|+|+|+|.+.  .++||+|++||+|.|+...++|||.|+++|+.||||+|||+.+...|.+
T Consensus         8 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~s   72 (73)
T 2ebp_A            8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPSS   72 (73)
T ss_dssp             CSEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCCSCC
T ss_pred             cceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCCCCC
Confidence            34679999999976  9999999999999999999999999999999999999999999887765

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.58  E-value=3.8e-15  Score=113.76  Aligned_cols=56  Identities=29%  Similarity=0.452  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      ...++|+|||.+..++||+|++||+|.|++..++|||.|++  +|+.||||+|||+++
T Consensus         6 ~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            6 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             CEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            45789999999999999999999999999999999999996  699999999999976

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=2.1e-14  Score=112.41  Aligned_cols=62  Identities=35%  Similarity=0.565  Sum_probs=58.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...++|+|+|.+..++||+|++||+|.|+...++|||.|+++|+.||||++||+.+...|.+
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~p~~   78 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS   78 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCCCSC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCCCCC
Confidence            45699999999999999999999999999998999999999999999999999999888875

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=111.36  Aligned_cols=62  Identities=29%  Similarity=0.465  Sum_probs=57.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe---CCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~---~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...++|+|||.+..++||+|++||+|.|+..   .++|||.|+++|+.||||++||+.+.+.|.+
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   72 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPSS   72 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSSCCC
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCCCCC
Confidence            4579999999999999999999999999987   4789999999999999999999999887764

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.55  E-value=1.2e-14  Score=112.04  Aligned_cols=64  Identities=28%  Similarity=0.434  Sum_probs=59.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCCCc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNV  366 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~skv  366 (371)
                      ...++|+|||.+..++||+|++||+|.|+...++|||.|+++|+.||||++||+.+.++|.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~   70 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSGP   70 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSCCSCCSC
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccCCCCCCC
Confidence            4579999999999999999999999999999899999999999999999999999998887654

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.54  E-value=1.2e-14  Score=112.04  Aligned_cols=60  Identities=25%  Similarity=0.484  Sum_probs=57.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+.++|
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~p   72 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPLP   72 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCCCC
Confidence            457999999999999999999999999999999999999999999999999999998877

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.53  E-value=1.4e-14  Score=110.05  Aligned_cols=60  Identities=32%  Similarity=0.452  Sum_probs=54.8

Q ss_pred             eEEEEecCCCCC--CCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCC
Q 017467          304 FLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       304 ~~arALydfea~--~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ..|+|+|+|.+.  .++||+|++||+|.|+...++|||.|.++|+.||||++||+.+.+..+
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~   63 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP   63 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCSCC-
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCCcCc
Confidence            368999999998  999999999999999999999999999999999999999998866443

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.53  E-value=2.3e-14  Score=108.85  Aligned_cols=60  Identities=25%  Similarity=0.453  Sum_probs=55.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...++|+|+|.+..++||+|++||+|.|++..+++||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISGPS   66 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCSCC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCCCC
Confidence            457999999999999999999999999999989999999999999999999999876543

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.53  E-value=5.8e-15  Score=116.79  Aligned_cols=61  Identities=31%  Similarity=0.474  Sum_probs=57.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.++|.
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~~p~   78 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPE   78 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSCCCC
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCCCCC
Confidence            4568999999999999999999999999999999999999999999999999999988775

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.53  E-value=1.8e-14  Score=110.63  Aligned_cols=61  Identities=30%  Similarity=0.518  Sum_probs=56.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ..|+|+|||.+..++||+|.+||+|.|+...  ++|||.|+++|+.||||++||+.+...|..
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~~~~   65 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEHH   65 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSCCCC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCCccc
Confidence            5689999999999999999999999999885  889999999999999999999998877653

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=3.1e-14  Score=108.38  Aligned_cols=58  Identities=21%  Similarity=0.309  Sum_probs=54.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|+|.+..++||+|++||+|.|+...++|||.|.++|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG   64 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCC
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCC
Confidence            3579999999999999999999999999999999999999999999999999998754

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.52  E-value=4e-14  Score=111.27  Aligned_cols=62  Identities=29%  Similarity=0.313  Sum_probs=57.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe--CCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~--~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...|+|+|||.+..++||+|++||+|.|+..  .++|||.|+++|+.||||++||+.+...|.|
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~s   80 (81)
T 1x43_A           17 NRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGPSS   80 (81)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCCCCC
T ss_pred             CeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCCCCC
Confidence            4679999999999999999999999999988  4689999999999999999999999888776

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.52  E-value=1.6e-14  Score=107.91  Aligned_cols=58  Identities=29%  Similarity=0.473  Sum_probs=52.5

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEe-CCCCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~-~d~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      .++|+|+|.+..++||+|.+||+|.|+.. .++|||.|+++|+.||||++||+.+.+.|
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   61 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET   61 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC---
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCCC
Confidence            58999999999999999999999999998 78999999999999999999999886544

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.52  E-value=2e-14  Score=109.95  Aligned_cols=59  Identities=24%  Similarity=0.432  Sum_probs=54.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      .+.|+|+|||.+..++||+|++||+|.|+...++|||.|+.+|+.||||++||+.+...
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC-
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCcc
Confidence            35799999999999999999999999999999999999999999999999999987653

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3.1e-14  Score=109.50  Aligned_cols=60  Identities=20%  Similarity=0.324  Sum_probs=55.6

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ....|+|+|+|.+..++||+|++||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A            8 EPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             SCEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSS
T ss_pred             CCEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCC
Confidence            346799999999999999999999999999988899999999999999999999988664

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.52  E-value=1.7e-14  Score=109.67  Aligned_cols=56  Identities=38%  Similarity=0.574  Sum_probs=52.7

Q ss_pred             eEEEEecCCCCC--CCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          304 FLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       304 ~~arALydfea~--~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ..|+|+|+|.+.  .++||+|++||+|.|+...++|||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   64 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLD   64 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBC
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcC
Confidence            469999999999  89999999999999999999999999999999999999998764

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.52  E-value=1.7e-14  Score=106.27  Aligned_cols=55  Identities=27%  Similarity=0.528  Sum_probs=52.3

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      .|+|+|+|.+..++||+|++||+|.|+...++|||.|+.+|+.||||++||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            5899999999999999999999999999989999999999999999999999764

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.52  E-value=1.7e-14  Score=106.31  Aligned_cols=55  Identities=29%  Similarity=0.393  Sum_probs=51.7

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~--Gk~G~FPsnYVE~i  358 (371)
                      |.++|+|||.+..++||+|++||+|.|++..++|||.|+..  |+.||||++||+.+
T Consensus         1 p~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            35899999999999999999999999999999999999987  99999999999875

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.52  E-value=2.2e-14  Score=106.51  Aligned_cols=55  Identities=33%  Similarity=0.523  Sum_probs=52.4

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..|+|+|||.+..++||+|.+||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            4689999999999999999999999999999999999999999999999999876

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.7e-14  Score=110.11  Aligned_cols=62  Identities=26%  Similarity=0.396  Sum_probs=57.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...++|||.|+.+|+.||||++||+.+...|.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~s   69 (70)
T 2ega_A            8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSS   69 (70)
T ss_dssp             CBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCCCCC
T ss_pred             CcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCCCCC
Confidence            45699999999999999999999999999999999999999999999999999998876655

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.52  E-value=2.6e-14  Score=107.17  Aligned_cols=56  Identities=27%  Similarity=0.519  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ...++|+|||.+..++||+|++||+|.|++..  ++|||.|+++|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            45799999999999999999999999999875  789999999999999999999876

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.52  E-value=2.6e-14  Score=105.95  Aligned_cols=56  Identities=34%  Similarity=0.561  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ...++|+|||.+..++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            35789999999999999999999999999999999999999999999999999864

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=3.6e-14  Score=107.98  Aligned_cols=59  Identities=20%  Similarity=0.376  Sum_probs=54.9

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...++|+|||.+..++||+|++||+|.|+...+++||.|+++|+.||||++||+.+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCC
Confidence            35789999999999999999999999999998999999999999999999999988653

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.51  E-value=2.5e-14  Score=105.26  Aligned_cols=55  Identities=33%  Similarity=0.465  Sum_probs=52.2

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      .++|+|||.+..++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            5899999999999999999999999999989999999999999999999998764

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.51  E-value=1.8e-14  Score=107.46  Aligned_cols=57  Identities=33%  Similarity=0.533  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ...++|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            356899999999999999999999999999999999999999999999999998764

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.51  E-value=3.4e-14  Score=105.00  Aligned_cols=55  Identities=38%  Similarity=0.715  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+..++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            4689999999999999999999999999998999999999999999999999864

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.51  E-value=3.3e-14  Score=107.88  Aligned_cols=56  Identities=39%  Similarity=0.545  Sum_probs=53.1

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      .|+|+|||.+..++||+|++||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   58 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPL   58 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCC
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCC
Confidence            58999999999999999999999999999899999999999999999999998754

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.50  E-value=3.4e-14  Score=106.46  Aligned_cols=58  Identities=36%  Similarity=0.699  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            3568999999999999999999999999999899999999999999999999998754

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.50  E-value=1.9e-14  Score=109.53  Aligned_cols=60  Identities=27%  Similarity=0.330  Sum_probs=55.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeC---CCCeeEEEeCCeeeEecCCceeeccCCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS---PSGWSEGECKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~---d~GWweGe~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ..|+|+|||.+..++||+|++||+|.|+...   ++|||.|+++|+.||||++||+.+.+.+.
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   66 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYD   66 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCCCCC
Confidence            4689999999999999999999999999987   79999999999999999999998876543

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.50  E-value=3.8e-14  Score=108.31  Aligned_cols=62  Identities=21%  Similarity=0.415  Sum_probs=56.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe--CCCCeeEEE-eCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGE-CKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~--~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|+..  .++|||.|+ .+|+.||||++||+.+.+.|++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   70 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL   70 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCCC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCCCCC
Confidence            4579999999999999999999999999998  688999997 7899999999999999887764

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.50  E-value=4.7e-14  Score=107.65  Aligned_cols=62  Identities=23%  Similarity=0.275  Sum_probs=56.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEe--CCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGEC--KGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~--~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...++|+|||.+..++||+|.+||+|.|+... ++|||.|+.  +|+.||||++||+.+.+.+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~~   70 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHT   70 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTSSCC
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCcCCC
Confidence            45799999999999999999999999999987 899999998  899999999999998776554

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.50  E-value=4.3e-14  Score=111.10  Aligned_cols=59  Identities=22%  Similarity=0.330  Sum_probs=54.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCC-eeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~G-WweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...+++ ||.|+++|+.||||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A           10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSC
T ss_pred             CeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            45799999999999999999999999999988787 999999999999999999998654

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.50  E-value=3.8e-14  Score=104.36  Aligned_cols=55  Identities=29%  Similarity=0.561  Sum_probs=52.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+..++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            4689999999999999999999999999998999999999999999999999864

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.50  E-value=2.3e-14  Score=109.55  Aligned_cols=61  Identities=23%  Similarity=0.400  Sum_probs=55.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...++|+|+|.+..++||+|++||+|.|+.. ++|||.|+++|+.||||++||+.+.+.+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   68 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS   68 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCCCC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCCCCCC
Confidence            4578999999999999999999999999988 799999999999999999999988766543

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=9.1e-14  Score=109.20  Aligned_cols=62  Identities=19%  Similarity=0.216  Sum_probs=56.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+...++.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~   69 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQPD   69 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCCCCC
Confidence            35789999999999999999999999999999999999999999999999999988765443

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.50  E-value=2.6e-14  Score=109.48  Aligned_cols=60  Identities=18%  Similarity=0.309  Sum_probs=50.7

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccCCCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ..|+|+|||.+..++||+|++||+|.|+.. ++|||.|+ .+|+.||||+|||+.+.+.|++
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~~~~~~~   65 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERKLEHHHH   65 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC------
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEcCCCCCC
Confidence            468999999999999999999999999988 57999999 5899999999999999998876

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.49  E-value=5.1e-14  Score=103.10  Aligned_cols=55  Identities=36%  Similarity=0.601  Sum_probs=52.1

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      .|+|+|||.+..++||+|++||+|.|++..++|||.|..+|+.||||++||+++.
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECC
Confidence            5899999999999999999999999999999999999999999999999999753

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=6.5e-14  Score=108.74  Aligned_cols=62  Identities=26%  Similarity=0.390  Sum_probs=56.4

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe----CCeeeEecCCceeeccCCCCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC----KGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~----~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ....|+|+|||.+. ++||+|++||+|.|++..++|||.|+.    +|+.||||++||+.+.+.|.|
T Consensus         9 ~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~~~~s   74 (75)
T 2egc_A            9 LKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPSS   74 (75)
T ss_dssp             CCEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCSCSSC
T ss_pred             CCeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCCCCCC
Confidence            34679999999999 999999999999999999999999997    479999999999999887765

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.49  E-value=4.4e-14  Score=103.74  Aligned_cols=55  Identities=25%  Similarity=0.451  Sum_probs=52.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|+|.+..++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            4689999999999999999999999999999999999999999999999999865

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.4e-14  Score=107.82  Aligned_cols=60  Identities=20%  Similarity=0.320  Sum_probs=55.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC---CCCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS---PSGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~---d~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...   ++|||.|+++|+.||||++||+.+.+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGPS   69 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCST
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCCC
Confidence            46799999999999999999999999999987   8999999999999999999999886543

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.49  E-value=6.5e-14  Score=106.17  Aligned_cols=58  Identities=36%  Similarity=0.473  Sum_probs=54.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|+|.+..++||+|.+||+|.|++..+++||.|+++|+.||||.+||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSG   64 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCS
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCC
Confidence            4579999999999999999999999999999899999999999999999999998754

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=110.45  Aligned_cols=59  Identities=32%  Similarity=0.457  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCC--CCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~--~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|+|.+.  .++||+|++||+|.|+...++|||.|+++|+.||||++||+.+...
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   76 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ   76 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCSS
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCCC
Confidence            4579999999955  9999999999999999999999999999999999999999998653

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.49  E-value=4.3e-14  Score=109.82  Aligned_cols=60  Identities=22%  Similarity=0.312  Sum_probs=55.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCC---eeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG---KAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~G---k~G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|++.+   +.||||++||+.+....
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~~   72 (76)
T 2ed1_A           10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSG   72 (76)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCCC
T ss_pred             CeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCCC
Confidence            4679999999999999999999999999998899999999866   89999999999987643

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=6.4e-14  Score=106.32  Aligned_cols=58  Identities=26%  Similarity=0.397  Sum_probs=53.9

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|||.+..++||+|++||+|.|+...+++||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSG   64 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCC
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCC
Confidence            3568999999999999999999999999999899999999999999999999997754

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.49  E-value=1.9e-14  Score=109.25  Aligned_cols=58  Identities=28%  Similarity=0.465  Sum_probs=53.8

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ..|+|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCCC
Confidence            3689999999999999999999999999998999999999999999999999987543

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.49  E-value=5.5e-14  Score=103.22  Aligned_cols=55  Identities=35%  Similarity=0.722  Sum_probs=52.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+..++||+|++||+|.|+...++|||.|+.+|+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            5689999999999999999999999999998999999999999999999999864

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.49  E-value=3.5e-14  Score=105.41  Aligned_cols=54  Identities=24%  Similarity=0.370  Sum_probs=51.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcee
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE  356 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE  356 (371)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|+.+|+.||||++||+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEE
Confidence            467999999999999999999999999999888999999999999999999997

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.49  E-value=6e-14  Score=105.16  Aligned_cols=55  Identities=35%  Similarity=0.615  Sum_probs=52.4

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..|+|+|||.+..++||+|.+||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEC
Confidence            4689999999999999999999999999998999999999999999999999876

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.49  E-value=5.4e-14  Score=106.88  Aligned_cols=56  Identities=25%  Similarity=0.433  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCC-----eeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG-----KAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~G-----k~G~FPsnYVE~i  358 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...++|||.|++.+     +.||||++||+.+
T Consensus         7 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            3579999999999999999999999999999999999999855     9999999999865

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.48  E-value=5.6e-14  Score=104.02  Aligned_cols=55  Identities=29%  Similarity=0.486  Sum_probs=51.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+..++||+|++||+|.|++..  ++|||.|+.+|+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            4689999999999999999999999999886  789999999999999999999864

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=109.52  Aligned_cols=61  Identities=30%  Similarity=0.437  Sum_probs=55.9

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ....|+|+|||.+..++||+|++||+|.|+...++|||.|++.|+.||||.+||+.+....
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   76 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIE   76 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSSCC
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCcC
Confidence            3467999999999999999999999999999989999999999999999999999876543

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.48  E-value=2.1e-14  Score=109.01  Aligned_cols=60  Identities=28%  Similarity=0.436  Sum_probs=55.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|+|.+..++||+|++||+|.|+...++|||.|+++|+.||||++||+.+...+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGPS   66 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSSC
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCCC
Confidence            456899999999999999999999999999888999999999999999999999886544

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.48  E-value=4.7e-14  Score=105.21  Aligned_cols=56  Identities=29%  Similarity=0.350  Sum_probs=52.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeecc
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i~  359 (371)
                      ..++|+|+|.+..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            468999999999999999999999999999999999999  58999999999999764

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.48  E-value=6.1e-14  Score=102.98  Aligned_cols=55  Identities=29%  Similarity=0.597  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|+|.+..++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            4689999999999999999999999999998999999999999999999999875

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.1e-13  Score=106.55  Aligned_cols=58  Identities=34%  Similarity=0.473  Sum_probs=54.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|+|.+..++||+|++||+|.|++..++|||.|+++|+.||||.+||+.+..
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (78)
T 2ed0_A           17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG   74 (78)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSS
T ss_pred             CEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCC
Confidence            4579999999999999999999999999999999999999999999999999998754

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.48  E-value=6.8e-14  Score=103.75  Aligned_cols=56  Identities=23%  Similarity=0.419  Sum_probs=52.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ...++|+|||.+..++||+|.+||+|.|++..+++||.|+.+|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            35689999999999999999999999999998999999999999999999999875

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=5.9e-14  Score=109.15  Aligned_cols=59  Identities=25%  Similarity=0.392  Sum_probs=54.9

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...+++||.|+++|+.||||.+||+.+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGT   68 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSC
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCC
Confidence            45799999999999999999999999999988899999999999999999999987654

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.48  E-value=5.1e-14  Score=105.21  Aligned_cols=57  Identities=28%  Similarity=0.489  Sum_probs=53.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ...|+|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            356999999999999999999999999999989999999999999999999999864

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.48  E-value=9.3e-14  Score=108.29  Aligned_cols=59  Identities=25%  Similarity=0.343  Sum_probs=55.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|+...+++||.|+++|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCc
Confidence            46799999999999999999999999999999999999999999999999999987653

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.48  E-value=8.7e-14  Score=108.82  Aligned_cols=60  Identities=25%  Similarity=0.400  Sum_probs=55.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCC----CCeeEEEeCCeeeEecCCceeeccCCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP----SGWSEGECKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d----~GWweGe~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ..++|+|||.+..++||+|++||+|.|+...+    +|||.|+++|+.||||++||+.+...|.
T Consensus        14 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   77 (79)
T 1uhc_A           14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPS   77 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSCC
T ss_pred             eEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCCCCC
Confidence            46899999999999999999999999999876    8999999999999999999999876654

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.47  E-value=7.1e-14  Score=105.33  Aligned_cols=57  Identities=25%  Similarity=0.302  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCC-CCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTA-ASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea-~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i~  359 (371)
                      ...++|+|+|.+ ..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+.
T Consensus         5 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             TCEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CcEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            356899999999 9999999999999999999999999999  68999999999999764

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=8.5e-14  Score=106.21  Aligned_cols=58  Identities=31%  Similarity=0.523  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|+|.+..++||+|++||+|.|+...  ++|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   66 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSG   66 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCC
Confidence            46799999999999999999999999999885  88999999999999999999998754

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=9.8e-14  Score=105.44  Aligned_cols=57  Identities=26%  Similarity=0.486  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ...++|+|||.+..++||+|++||+|.|+...+++||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS   63 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcC
Confidence            457999999999999999999999999999989999999999999999999999874

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.47  E-value=6e-14  Score=106.32  Aligned_cols=59  Identities=27%  Similarity=0.463  Sum_probs=52.9

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ..|+|+|||.+..++||+|++||+|.|++..++|||.|+ .+|+.||||++||+...+.+
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~   63 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHHH   63 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC---
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCCCC
Confidence            468999999999999999999999999999899999999 78999999999999876543

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=108.63  Aligned_cols=60  Identities=27%  Similarity=0.459  Sum_probs=55.5

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ....|+|+|+|.+..++||+|++||+|.|+...++|||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSCC
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCCc
Confidence            346799999999999999999999999999998999999999999999999999988653

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.47  E-value=6.3e-14  Score=107.35  Aligned_cols=60  Identities=28%  Similarity=0.354  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|+  .+|+.||||++||+.+...|
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~~   67 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEP   67 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC---
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCCC
Confidence            3468999999999999999999999999999999999999  68999999999999876543

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.47  E-value=9e-14  Score=105.79  Aligned_cols=58  Identities=29%  Similarity=0.412  Sum_probs=54.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|+|.+..++||+|++||+|.|+...+++||.|+++|+.||||++||+.+..
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            4569999999999999999999999999999899999999999999999999987754

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.47  E-value=1.5e-13  Score=105.72  Aligned_cols=59  Identities=31%  Similarity=0.501  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|+|.+..++||+|++||+|.|+...  ++|||.|+++|+.||||++||+.+.+.
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   69 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD   69 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCcc
Confidence            45799999999999999999999999999885  889999999999999999999987543

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.47  E-value=8.9e-14  Score=106.08  Aligned_cols=57  Identities=32%  Similarity=0.487  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ...++|+|||.+..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+.
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   69 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCP   69 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECC
Confidence            457999999999999999999999999999999999999999999999999999874

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.47  E-value=9.8e-14  Score=102.14  Aligned_cols=54  Identities=28%  Similarity=0.527  Sum_probs=51.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceee
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  357 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~  357 (371)
                      ..++|+|+|.+..++||+|.+||+|.|+...++|||.|+.+|+.||||++||++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            468999999999999999999999999999899999999999999999999975

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.46  E-value=9.7e-14  Score=106.44  Aligned_cols=60  Identities=22%  Similarity=0.371  Sum_probs=54.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|||.+..++||+|.+||+|.|+...+++||.|+.+|+.||||++||+.+.+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   64 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ   64 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC--
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCCC
Confidence            356899999999999999999999999999989999999999999999999999887643

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.3e-13  Score=107.71  Aligned_cols=60  Identities=35%  Similarity=0.550  Sum_probs=55.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.||||.+||+.+...+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNA   66 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSCS
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCCC
Confidence            457999999999999999999999999999989999999999999999999999886543

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.46  E-value=1.1e-13  Score=110.22  Aligned_cols=58  Identities=22%  Similarity=0.385  Sum_probs=54.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|..+|+.||||++||+.+..
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA   74 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCT
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCC
Confidence            4579999999999999999999999999999899999999999999999999998854

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.3e-13  Score=109.30  Aligned_cols=59  Identities=24%  Similarity=0.379  Sum_probs=54.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe--CCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~--~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||.+..++||+|++||+|.|+..  .++|||.|+++|+.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   68 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAP   68 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCCS
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCCc
Confidence            4579999999999999999999999999987  8899999999999999999999987543

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=9.8e-14  Score=106.01  Aligned_cols=58  Identities=26%  Similarity=0.427  Sum_probs=54.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|||.+..++||+|.+||+|.|++..++|||.|+..|+.||||++||+.+..
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKD   65 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccC
Confidence            4579999999999999999999999999998889999999999999999999998865

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.46  E-value=7.5e-14  Score=102.30  Aligned_cols=54  Identities=30%  Similarity=0.539  Sum_probs=50.4

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeec
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKR  358 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i  358 (371)
                      .++|+|||.+..++||+|.+||+|.|++..++|||.|+ .+|+.||||++||+.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            58999999999999999999999999999899999999 7899999999999853

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=9.3e-14  Score=106.27  Aligned_cols=57  Identities=23%  Similarity=0.404  Sum_probs=51.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEE-eCCCCeeEEE-eCCeeeEecCCceeeccC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRK-VSPSGWSEGE-CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~-~~d~GWweGe-~~Gk~G~FPsnYVE~i~~  360 (371)
                      ..|+|+|||.+..++||+|.+||+|.|+. ..++|||.|+ .+|+.||||++||+....
T Consensus        12 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   70 (71)
T 1csk_A           12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   70 (71)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC---
T ss_pred             CEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEccC
Confidence            56999999999999999999999999998 6789999999 789999999999987643

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=107.34  Aligned_cols=57  Identities=23%  Similarity=0.339  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCCCC-------CCCccCCCCCEEEEEE-eCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAAS-------EKELSLGVGDYVVVRK-VSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~-------~~ELsf~~GDiI~Vl~-~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ...++|+|||.+..       ++||+|++||+|.|+. ..++|||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   71 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMS   71 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEcc
Confidence            45799999999999       9999999999999997 578999999999999999999999873

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=5e-14  Score=108.46  Aligned_cols=59  Identities=29%  Similarity=0.394  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEE-eCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRK-VSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~-~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|+|.+..++||+|++||+|.|+. ..+++||.|+++|+.||||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            356999999999999999999999999887 46889999999999999999999987643

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.5e-13  Score=106.57  Aligned_cols=60  Identities=28%  Similarity=0.340  Sum_probs=54.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~--Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...++|||.|+..  |+.||||++||+.+.+-+
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~~   66 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPEL   66 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSSC
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCCC
Confidence            357999999999999999999999999999999999999974  899999999999986644

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=107.03  Aligned_cols=62  Identities=16%  Similarity=0.303  Sum_probs=55.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCC-CCeeEEEeC-CeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECK-GKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d-~GWweGe~~-Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...|+|+|+|.+..++||+|++||+|.|+...+ ++||.|+.. |+.||||++||+.+...+++
T Consensus        13 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   76 (78)
T 2dl5_A           13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSSGPS   76 (78)
T ss_dssp             SEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCCCSC
T ss_pred             CcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCCCCC
Confidence            457999999999999999999999999999875 899999986 99999999999988765543

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1e-13  Score=100.64  Aligned_cols=52  Identities=37%  Similarity=0.716  Sum_probs=49.0

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCC-CCeeEEEeCCeeeEecCCcee
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECKGKAGWFPSANVE  356 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d-~GWweGe~~Gk~G~FPsnYVE  356 (371)
                      .|+|+|+|.+..++||+|++||+|.|++..+ +|||.|+.+|+.||||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            4899999999999999999999999999885 799999999999999999985

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.45  E-value=1.3e-13  Score=104.54  Aligned_cols=55  Identities=22%  Similarity=0.366  Sum_probs=51.9

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i  358 (371)
                      ..|+|+|+|.+..++||+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            358999999999999999999999999999999999999 5899999999999987

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.45  E-value=1.3e-13  Score=102.96  Aligned_cols=55  Identities=29%  Similarity=0.445  Sum_probs=51.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceee
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  357 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~  357 (371)
                      ...++|+|||.+..++||+|++||+|.|+...++|||.|+..|+.||||++||+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEE
Confidence            3568999999999999999999999999999899999999999999999999985

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.45  E-value=1.4e-13  Score=102.34  Aligned_cols=56  Identities=29%  Similarity=0.509  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeee-EecCCceeecc
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAG-WFPSANVEKRQ  359 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G-~FPsnYVE~i~  359 (371)
                      ..++|+|||.+..++||+|++||+|.|+...++|||.|+.+|+.| |||++||+.+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            458999999999999999999999999999899999999999886 99999999764

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=1.1e-13  Score=105.28  Aligned_cols=59  Identities=24%  Similarity=0.379  Sum_probs=53.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCee-eEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-GWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~-G~FPsnYVE~i~~l  361 (371)
                      ...++|+|+|.+..++||+|.+||+|.|+...++|||.|++.+.. ||||++||+.+.+.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECccC
Confidence            356999999999999999999999999999889999999997776 99999999987643

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.45  E-value=2.4e-13  Score=108.90  Aligned_cols=63  Identities=22%  Similarity=0.426  Sum_probs=56.5

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEe--CCCCeeEEE-eCCeeeEecCCceeeccCCCCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGE-CKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~--~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ....|+|+|+|.+..++||+|.+||+|.|++.  .++|||.|+ .+|+.||||.+||+.+...++.
T Consensus        16 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   81 (91)
T 1wx6_A           16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL   81 (91)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEESSSC
T ss_pred             ccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCcCCC
Confidence            34679999999999999999999999999998  688999999 6899999999999998765543

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.44  E-value=1.6e-13  Score=101.27  Aligned_cols=55  Identities=25%  Similarity=0.331  Sum_probs=51.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEe-CCCCeeEEEe--CCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~-~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+..++||+|.+||+|.|++. .++|||.|+.  +|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            468999999999999999999999999998 4899999998  899999999999854

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.44  E-value=8e-14  Score=113.09  Aligned_cols=64  Identities=27%  Similarity=0.373  Sum_probs=57.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCCCc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSNV  366 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~skv  366 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+.+...+
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~~~~~   81 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELG   81 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCSSTTT
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCCcccc
Confidence            4579999999999999999999999999998899999999999999999999999876554433

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.9e-13  Score=109.36  Aligned_cols=62  Identities=34%  Similarity=0.575  Sum_probs=57.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...|+|+|+|.+..++||+|++||+|.|+...+++||.|+++|+.||||.+||+.+.+.|..
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~   78 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLG   78 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCCCSS
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCcccc
Confidence            35699999999999999999999999999999999999999999999999999998766544

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=106.46  Aligned_cols=58  Identities=29%  Similarity=0.463  Sum_probs=53.7

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~  360 (371)
                      ....++|+|+|.+..++||+|.+||+|.|++. ++|||.|+.  +|+.||||++||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           16 DLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             SCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            45679999999999999999999999999998 999999998  89999999999998754

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.44  E-value=1.4e-13  Score=102.60  Aligned_cols=55  Identities=22%  Similarity=0.437  Sum_probs=50.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i  358 (371)
                      ...++|+|||.+..++||+|++||+|.|++.. +|||.|+  .+|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            45799999999999999999999999999885 5999999  5899999999999863

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.7e-13  Score=105.63  Aligned_cols=58  Identities=40%  Similarity=0.557  Sum_probs=53.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|+|.+..++||+|++||+|.|++..  ++|||.|+++|+.||||.+||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCC
Confidence            45699999999999999999999999999887  45999999999999999999998754

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.44  E-value=1.8e-13  Score=111.31  Aligned_cols=61  Identities=31%  Similarity=0.421  Sum_probs=55.0

Q ss_pred             cceEEEEecCCCCCC------CCCccCCCCCEEEEE-EeCCCCeeEEEe-CCeeeEecCCceeeccCCC
Q 017467          302 VYFLAEAIHPFTAAS------EKELSLGVGDYVVVR-KVSPSGWSEGEC-KGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       302 ~~~~arALydfea~~------~~ELsf~~GDiI~Vl-~~~d~GWweGe~-~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ....|+|+|||.+..      ++||+|.+||+|.|+ ...++|||.|++ +|+.||||++||+.+...+
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~~   84 (96)
T 1wie_A           16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             CCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCCC
Confidence            356799999999988      999999999999999 778999999998 9999999999999876543

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.44  E-value=1.7e-13  Score=100.47  Aligned_cols=54  Identities=37%  Similarity=0.646  Sum_probs=50.4

Q ss_pred             eEEEEecCC-CCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCceee
Q 017467          304 FLAEAIHPF-TAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK  357 (371)
Q Consensus       304 ~~arALydf-ea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~--Gk~G~FPsnYVE~  357 (371)
                      +.++|+||| .+..++||+|++||+|.|+...++|||.|+..  |+.||||++||+.
T Consensus         1 p~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            1 PMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             CEEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            368999999 89999999999999999999999999999986  9999999999974

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.44  E-value=1.3e-13  Score=105.78  Aligned_cols=58  Identities=29%  Similarity=0.462  Sum_probs=52.8

Q ss_pred             ceEEEEecCCCC-CCCCCccCCCCCEEEEEEe-CCCCeeEEEeC--CeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTA-ASEKELSLGVGDYVVVRKV-SPSGWSEGECK--GKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea-~~~~ELsf~~GDiI~Vl~~-~d~GWweGe~~--Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|+|.+ ..++||+|.+||+|.|+.. .++|||.|++.  |+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   68 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCC
Confidence            457999999996 8999999999999999987 78999999987  9999999999998754

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.44  E-value=1.3e-13  Score=103.16  Aligned_cols=54  Identities=26%  Similarity=0.465  Sum_probs=50.7

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC--------CeeeEecCCceeec
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--------GKAGWFPSANVEKR  358 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~--------Gk~G~FPsnYVE~i  358 (371)
                      .|+|+|+|.+..++||+|.+||+|.|+...++|||.|+..        |+.||||++||+.+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            5899999999999999999999999999989999999976        88999999999875

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.44  E-value=3e-13  Score=104.99  Aligned_cols=56  Identities=32%  Similarity=0.445  Sum_probs=52.3

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceee
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  357 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~  357 (371)
                      ....++|+|||.+..++||+|++||+|.|+...++|||.|+.+|+.||||++||+.
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            45679999999999999999999999999998889999999999999999999974

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.43  E-value=1.9e-13  Score=103.87  Aligned_cols=58  Identities=28%  Similarity=0.420  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+..++||+|.+||+|.|++..++|||.|+. +|+.||||++||+.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETL   64 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECcc
Confidence            45799999999999999999999999999999999999997 99999999999997643

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.43  E-value=2e-13  Score=104.65  Aligned_cols=56  Identities=27%  Similarity=0.430  Sum_probs=52.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      ...++|+|||.+..++||+|.+||+|.|+...+++||.|+.  +|+.||||++||+.+
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            35689999999999999999999999999998999999998  899999999999875

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.9e-13  Score=106.93  Aligned_cols=59  Identities=24%  Similarity=0.419  Sum_probs=53.5

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCC--CCeeEEEeCCeeeEecCCceeeccC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d--~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ....++|+|||.+..++||+|++||+|.|+...+  +|||.|+++|+.||||.+||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCC
Confidence            3457999999999999999999999999999875  8999999999999999999987643

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.43  E-value=3.7e-13  Score=104.45  Aligned_cols=62  Identities=27%  Similarity=0.422  Sum_probs=55.6

Q ss_pred             ceEEEEecCCCCC-CCCCccCCCCCEEEEEEeC-CCCeeEEE-eCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAA-SEKELSLGVGDYVVVRKVS-PSGWSEGE-CKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~-~~~ELsf~~GDiI~Vl~~~-d~GWweGe-~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...++|+|||.+. .++||+|++||+|.|+... ++|||.|+ .+|+.||||.+||+.+...+..
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~~~~   73 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD   73 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCCCCC
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCCCCC
Confidence            3679999999999 9999999999999999885 79999999 7999999999999998765443

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=1.3e-13  Score=104.41  Aligned_cols=56  Identities=27%  Similarity=0.465  Sum_probs=50.0

Q ss_pred             ceEEEEecCCCCCCCCC-ccCCCCCEEEEEEe-CCCCeeEEE--eCCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKE-LSLGVGDYVVVRKV-SPSGWSEGE--CKGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~E-Lsf~~GDiI~Vl~~-~d~GWweGe--~~Gk~G~FPsnYVE~i  358 (371)
                      ...|+|+|+|.+..+++ |+|++||+|.|+.. .++|||.|+  .+|+.||||+|||+.+
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            45799999999988777 99999999999854 678999999  6899999999999876

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.43  E-value=2.5e-13  Score=100.97  Aligned_cols=57  Identities=28%  Similarity=0.443  Sum_probs=51.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe-CCCCeeEEEeCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~-~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ...|+|+|||.+..++||+|.+||+|.|+.. .+.+||.|+.+|+.||||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            3568999999999999999999999999984 45679999999999999999999764

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=9.7e-14  Score=106.44  Aligned_cols=57  Identities=25%  Similarity=0.313  Sum_probs=52.9

Q ss_pred             eEEEEecCCCC-CCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeeccC
Q 017467          304 FLAEAIHPFTA-ASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       304 ~~arALydfea-~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i~~  360 (371)
                      ..++|+|+|.+ ..++||+|++||+|.|+...++|||.|+  .+|+.||||++||+.+.+
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            46899999999 9999999999999999999999999999  689999999999998743

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.43  E-value=2.3e-13  Score=103.50  Aligned_cols=57  Identities=21%  Similarity=0.320  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+..++||+|.+||+|.|+.. +++||.|+ .+|+.||||++||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKNEAGRSGYIPSNILEPLSG   64 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEEGGGEECCCC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEhHHcEECCC
Confidence            4569999999999999999999999999988 58999999 799999999999998754

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.43  E-value=2.2e-13  Score=103.74  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=52.9

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCC--eeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG--KAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~G--k~G~FPsnYVE~i~~  360 (371)
                      ...++|+|+|.+..++||+|++||+|.|++..+++||.|+..+  +.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG   66 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSS
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCC
Confidence            3568999999999999999999999999998889999999865  999999999998754

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.43  E-value=3.1e-13  Score=104.64  Aligned_cols=60  Identities=25%  Similarity=0.369  Sum_probs=54.9

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC---Cee------eEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK---GKA------GWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~---Gk~------G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|+..   |+.      ||||++||+.+.++.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~~~   75 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSGPS   75 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCCCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCCcC
Confidence            357999999999999999999999999999989999999986   888      999999999887653

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.43  E-value=1.5e-13  Score=105.92  Aligned_cols=56  Identities=23%  Similarity=0.450  Sum_probs=52.5

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      .|+|+|||.+ +++||+|++||+|.|++..++|||.|+++|+.||||++||+.+.+.
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   57 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   57 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            3789999998 8999999999999999999999999999999999999999988765

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.43  E-value=2.2e-13  Score=101.47  Aligned_cols=55  Identities=29%  Similarity=0.504  Sum_probs=51.4

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+..++||+|.+||+|.|+...++|||.|+.  +|+.||||++||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            4589999999999999999999999999998999999998  899999999999875

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=1.5e-13  Score=106.51  Aligned_cols=58  Identities=36%  Similarity=0.704  Sum_probs=54.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|||.+..++||+|++||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A           10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             CEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECCc
Confidence            4579999999999999999999999999998899999999999999999999998753

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.43  E-value=1.5e-13  Score=104.56  Aligned_cols=59  Identities=29%  Similarity=0.427  Sum_probs=54.1

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeeccCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ..++|+|+|.+..++||+|++||+|.|++..+++||.|+  .+|+.||||++||+.+...+
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   68 (70)
T 2cuc_A            8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGPS   68 (70)
T ss_dssp             CCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCTT
T ss_pred             cEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcCCC
Confidence            468999999999999999999999999998889999999  68999999999999876543

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.43  E-value=3.1e-13  Score=102.83  Aligned_cols=57  Identities=35%  Similarity=0.553  Sum_probs=52.7

Q ss_pred             eEEEEecCCC-CCCCCCccCCCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCceeeccC
Q 017467          304 FLAEAIHPFT-AASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKRQR  360 (371)
Q Consensus       304 ~~arALydfe-a~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~--Gk~G~FPsnYVE~i~~  360 (371)
                      +.++|+|||. +..++||+|++||+|.|++..++|||.|+..  |+.||||++||+.+.+
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   62 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD   62 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCS
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            4689999996 9999999999999999999989999999986  9999999999998754

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.9e-13  Score=100.56  Aligned_cols=55  Identities=29%  Similarity=0.398  Sum_probs=51.1

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~--Gk~G~FPsnYVE~i  358 (371)
                      ..|+|+|||.+..++||+|++||+|.|+...++|||.|+..  |+.||||++||+.+
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            35899999999999999999999999999989999999974  89999999999876

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.43  E-value=3.2e-13  Score=103.90  Aligned_cols=61  Identities=20%  Similarity=0.310  Sum_probs=54.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|+.. ++|||.|+. +|+.||||++||+.+.+++..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   68 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNSARAA   68 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCCCCSS
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCCCccc
Confidence            3579999999999999999999999999987 679999995 899999999999998776543

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=2.9e-13  Score=104.59  Aligned_cols=57  Identities=28%  Similarity=0.518  Sum_probs=52.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|++. ++|||.|+++|+.||||.+||+.+..
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPG   66 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCC
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECCC
Confidence            4579999999999999999999999999988 57999999999999999999998754

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=2.3e-13  Score=109.76  Aligned_cols=59  Identities=34%  Similarity=0.594  Sum_probs=54.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...  ++|||.|+++|+.||||.+||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            34689999999999999999999999999875  789999999999999999999988654

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=4e-13  Score=102.20  Aligned_cols=58  Identities=29%  Similarity=0.346  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|+|.+..++||+|.+||+|.|++..++|||.|+.  +|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG   66 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTC
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCC
Confidence            45789999999999999999999999999999999999997  49999999999998754

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.42  E-value=6.4e-13  Score=103.84  Aligned_cols=59  Identities=29%  Similarity=0.580  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC-----CeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-----GKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~-----Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|++.     |+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            356899999999999999999999999999989999999975     48999999999988654

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.42  E-value=2e-13  Score=106.66  Aligned_cols=60  Identities=22%  Similarity=0.380  Sum_probs=53.0

Q ss_pred             cceEEEEecCCCCCCCC-CccCCCCCEEEEEEeCCC-----CeeEEEe-CCeeeEecCCceeeccCC
Q 017467          302 VYFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSPS-----GWSEGEC-KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       302 ~~~~arALydfea~~~~-ELsf~~GDiI~Vl~~~d~-----GWweGe~-~Gk~G~FPsnYVE~i~~l  361 (371)
                      ....|+|+|||.+..++ ||+|++||+|.|+...++     |||.|+. +|+.||||++||+.+.+.
T Consensus        13 ~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   79 (80)
T 2v1r_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (80)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC---
T ss_pred             cCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCCC
Confidence            45679999999999999 999999999999998876     9999998 899999999999988653

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.7e-13  Score=107.86  Aligned_cols=59  Identities=29%  Similarity=0.445  Sum_probs=54.5

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCceeeccC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEKRQR  360 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~--Gk~G~FPsnYVE~i~~  360 (371)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+..  |+.||||.+||+.+..
T Consensus        16 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~   76 (90)
T 2yup_A           16 EYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSRE   76 (90)
T ss_dssp             GSEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEEC
T ss_pred             cceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            4567999999999999999999999999999889999999986  9999999999998754

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.42  E-value=1.8e-13  Score=103.54  Aligned_cols=57  Identities=30%  Similarity=0.512  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCC-CCCCCccCCCCCEEEEEEe-CCCCeeEEEeC--CeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTA-ASEKELSLGVGDYVVVRKV-SPSGWSEGECK--GKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea-~~~~ELsf~~GDiI~Vl~~-~d~GWweGe~~--Gk~G~FPsnYVE~i~  359 (371)
                      ...|+|+|||.+ ..++||+|++||+|.|+.. .++|||.|+..  |+.||||++||+.+.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            457999999995 9999999999999999985 78999999986  999999999998763

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.42  E-value=2.8e-13  Score=102.44  Aligned_cols=57  Identities=25%  Similarity=0.394  Sum_probs=52.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCC--eeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG--KAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~G--k~G~FPsnYVE~i~  359 (371)
                      ...|+|+|||.+..++||+|++||+|.|++..++|||.|+..+  +.||||++||+.+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   64 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK   64 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEE
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECC
Confidence            3569999999999999999999999999999899999999865  99999999999874

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.7e-13  Score=105.34  Aligned_cols=58  Identities=26%  Similarity=0.320  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCCCC-------CCCccCCCCCEEEEEEeCC-CCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAAS-------EKELSLGVGDYVVVRKVSP-SGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~-------~~ELsf~~GDiI~Vl~~~d-~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|+|.+..       ++||+|++||+|.|+...+ +|||.|+++|+.||||++||+.+..
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCC
Confidence            45799999999998       9999999999999998866 4899999999999999999987643

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.42  E-value=6.8e-13  Score=104.91  Aligned_cols=58  Identities=26%  Similarity=0.446  Sum_probs=53.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||.+..++||+|++||+|.|++.. +|||.|+.  +|+.||||++||+.+..+
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   84 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSL   84 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGGC
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEcccC
Confidence            45799999999999999999999999999987 69999998  999999999999987543

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.42  E-value=4e-13  Score=107.78  Aligned_cols=63  Identities=21%  Similarity=0.340  Sum_probs=55.1

Q ss_pred             cceEEEEecCCCCCCCC-CccCCCCCEEEEEEeCCC-----CeeEEEe-CCeeeEecCCceeeccCCCCC
Q 017467          302 VYFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSPS-----GWSEGEC-KGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       302 ~~~~arALydfea~~~~-ELsf~~GDiI~Vl~~~d~-----GWweGe~-~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ....|+|+|||.+..++ ||+|++||+|.|+...+.     |||.|+. +|+.||||++||+.+...++.
T Consensus        13 ~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~~~~   82 (92)
T 1jqq_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRKKI   82 (92)
T ss_dssp             TCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC---
T ss_pred             cCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCCCCC
Confidence            34679999999999999 999999999999998876     9999998 899999999999998765544

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.42  E-value=1.8e-13  Score=100.41  Aligned_cols=52  Identities=17%  Similarity=0.456  Sum_probs=49.1

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCC-CCeeEEEe--CCeeeEecCCcee
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGEC--KGKAGWFPSANVE  356 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d-~GWweGe~--~Gk~G~FPsnYVE  356 (371)
                      .|+|+|+|.+..++||+|++||+|.|++..+ +|||.|+.  +|+.||||++||+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            4799999999999999999999999999886 79999998  9999999999996

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.42  E-value=2.1e-13  Score=103.30  Aligned_cols=57  Identities=26%  Similarity=0.401  Sum_probs=52.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~  359 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|+...++|||.|+ .+|+.||||++||+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            3568999999999999999999999999999889999999 79999999999998764

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.40  E-value=3.7e-13  Score=107.00  Aligned_cols=61  Identities=25%  Similarity=0.401  Sum_probs=55.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+.  +|+.||||++||+.+.+++.
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   68 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQG   68 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTCC-
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCccc
Confidence            35689999999999999999999999999998999999998  89999999999999876543

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.40  E-value=2.4e-13  Score=108.16  Aligned_cols=58  Identities=24%  Similarity=0.416  Sum_probs=52.7

Q ss_pred             cceEEEEecCC-CCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC------CeeeEecCCceeecc
Q 017467          302 VYFLAEAIHPF-TAASEKELSLGVGDYVVVRKVSPSGWSEGECK------GKAGWFPSANVEKRQ  359 (371)
Q Consensus       302 ~~~~arALydf-ea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~------Gk~G~FPsnYVE~i~  359 (371)
                      ....|+|+||| .+..++||+|++||+|.|+...++|||.|++.      |+.||||++||+.+.
T Consensus        17 ~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           17 GSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CCeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            45679999999 79999999999999999999999999999974      799999999998764

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.40  E-value=3.2e-13  Score=106.19  Aligned_cols=58  Identities=28%  Similarity=0.491  Sum_probs=52.4

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      ..|+|+|+|.+..++||+|.+||+|.|++..++|||.|+.  +|+.||||++||+.+.++
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            6 TLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             cEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            4589999999999999999999999999998999999998  899999999999988654

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.40  E-value=2.5e-13  Score=100.37  Aligned_cols=55  Identities=25%  Similarity=0.479  Sum_probs=49.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCC-CCeeEEEeC-CeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECK-GKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d-~GWweGe~~-Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+..++||+|++||+|.|++..+ +|||.|+.+ |+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            45899999999999999999999999988754 599999987 99999999999854

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=7.8e-13  Score=107.56  Aligned_cols=59  Identities=22%  Similarity=0.296  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCCC--------CCCCccCCCCCEEEEEEe-CCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAA--------SEKELSLGVGDYVVVRKV-SPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~--------~~~ELsf~~GDiI~Vl~~-~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||.+.        .++||+|++||+|.|+.. .++|||.|+++|+.||||++||+.+...
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCCC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            4568999999998        799999999999999965 5678999999999999999999988643

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.39  E-value=3.4e-13  Score=104.03  Aligned_cols=56  Identities=23%  Similarity=0.414  Sum_probs=49.9

Q ss_pred             ceEEEEecCCCCCCCC-CccCCCCCEEEEEEeCC-----CCeeEEEe-CCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSP-----SGWSEGEC-KGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~-ELsf~~GDiI~Vl~~~d-----~GWweGe~-~Gk~G~FPsnYVE~i  358 (371)
                      ...++|+|+|.|++++ ||+|++||+|.|+++.+     +|||.|+. +|+.||||+|||+.+
T Consensus         7 ~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             --CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eeEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            3468999999999999 99999999999998875     49999998 899999999999864

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.39  E-value=1.4e-13  Score=104.22  Aligned_cols=57  Identities=21%  Similarity=0.342  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~  359 (371)
                      ...++|+|+|.+..++||+|.+||+|.|+...+++||.|+ .+|+.||||++||+.+.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            4579999999999999999999999999998889999999 79999999999998754

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=99.39  E-value=3.9e-11  Score=122.80  Aligned_cols=55  Identities=25%  Similarity=0.495  Sum_probs=0.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEeC-CeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECK-GKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~~-Gk~G~FPsnYVE~i  358 (371)
                      ..|+|+|||.+..++||+|.+||+|.|+... ++|||.|++. |+.||||++||+.+
T Consensus       429 ~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          429 VRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ---------------------------------------------------------
T ss_pred             eEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            3589999999999999999999999998876 4599999987 99999999999875

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=102.93  Aligned_cols=59  Identities=17%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCC-CeeEEEe--CCeeeEecCCceeeccCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGEC--KGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~-GWweGe~--~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ..|+|+|||.+..++||+|++||+|.|+...++ +||.|+.  +|+.||||++||+....++
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   79 (81)
T 1x6g_A           18 TQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSGPS   79 (81)
T ss_dssp             CEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECCCSC
T ss_pred             CEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEccccc
Confidence            469999999999999999999999999998766 9999985  7999999999999876554

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.39  E-value=5.1e-13  Score=102.26  Aligned_cols=56  Identities=23%  Similarity=0.351  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe---CCee---eEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKA---GWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~---~Gk~---G~FPsnYVE~i~  359 (371)
                      ...++|+|||.+..++||+|.+||+|.| ...++|||.|+.   +|+.   ||||++||+.+.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            3579999999999999999999999999 888999999998   7999   999999998764

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.2e-12  Score=103.78  Aligned_cols=58  Identities=17%  Similarity=0.283  Sum_probs=53.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...+++||.|+ .+|+.||||++||+.+..
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~   77 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP   77 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECCC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEccC
Confidence            3569999999999999999999999999999889999997 689999999999998743

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.38  E-value=2.9e-13  Score=100.23  Aligned_cols=55  Identities=20%  Similarity=0.315  Sum_probs=51.0

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~  360 (371)
                      .++|+|||.+..++||+|.+||+|.|+.. ++|||.|+ .+|+.||||++||+.+.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            58999999999999999999999999988 89999998 589999999999998753

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.38  E-value=4e-13  Score=103.89  Aligned_cols=57  Identities=30%  Similarity=0.465  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ...|+|+|||.+..++||+|++||+|.|++.. ++|||.|+++|+.||||++||+.+.
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            35699999999999999999999999999887 6799999999999999999999764

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.38  E-value=4.2e-13  Score=112.16  Aligned_cols=61  Identities=25%  Similarity=0.380  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe-CCCC--eeEEEeC--------CeeeEecCCceeeccCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSG--WSEGECK--------GKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~-~d~G--WweGe~~--------Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ...++|+|||.+..++||+|++||+|.|+.+ .+.|  ||.|++.        |+.||||+|||+.+..+..
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~~~   93 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKP   93 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSC
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccccCc
Confidence            4569999999999999999999999999987 3445  9999986        8999999999998876543

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.38  E-value=5.3e-13  Score=107.61  Aligned_cols=54  Identities=35%  Similarity=0.535  Sum_probs=50.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC-----CCCeeEEEe-CCeeeEecCCcee
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-----PSGWSEGEC-KGKAGWFPSANVE  356 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~-----d~GWweGe~-~Gk~G~FPsnYVE  356 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...     ++|||.|+. +|+.||||++||+
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~   88 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA   88 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEE
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCc
Confidence            45799999999999999999999999999984     899999998 9999999999997

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.37  E-value=6.4e-13  Score=108.06  Aligned_cols=61  Identities=28%  Similarity=0.415  Sum_probs=55.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ...++|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+...++
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   94 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSG   94 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCSS
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCCCC
Confidence            4568999999999999999999999999999889999999999999999999998866443

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=99.37  E-value=1e-10  Score=109.21  Aligned_cols=168  Identities=14%  Similarity=0.192  Sum_probs=116.8

Q ss_pred             hhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhh-hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017467           80 TKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCR-YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSS  155 (371)
Q Consensus        80 ~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~k-Yg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~  155 (371)
                      .+.+||+   |+.++.++..+       ...||++|.. ||..++   .    +.++..+|+++.   ..+.+|...+.+
T Consensus        68 ~~~l~k~~k~y~~~~~~~~~~-------~~~l~~~~~~l~~~~~~---~----~~~~~~~~~~~~---~~~~d~~~~l~~  130 (251)
T 2fic_A           68 GTRLQKDLRTYLASVKAMHEA-------SKKLNECLQEVYEPDWP---G----RDEANKIAENND---LLWMDYHQKLVD  130 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCTTST---T----HHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCCCcC---C----chhHHHHHHHHH---HHHHHHHHHHHH
Confidence            4556665   66666665543       2368888887 777765   2    234455666654   455667777889


Q ss_pred             hhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 017467          156 QVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM  227 (371)
Q Consensus       156 ~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m  227 (371)
                      +|++||..++ +...++        .|+||||+-+             .|..|.++....+ ..+|..||++|++.+..+
T Consensus       131 ~vi~Pl~~~~-~~~~~i~~~ikKR~~k~lDyD~~~-------------~~l~kl~~k~~kd-~~kl~kae~el~~ak~~y  195 (251)
T 2fic_A          131 QALLTMDTYL-GQFPDIKSRIAKRGRKLVDYDSAR-------------HHYESLQTAKKKD-EAKIAKAEEELIKAQKVF  195 (251)
T ss_dssp             HTHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHC--------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHhHHHHHHHHHHHHHHhhHHHHH-------------HHHHHHHhcCcCc-HHHHHHHHHHHHHHHHHH
Confidence            9999999999 455443        5666655544             3333433322112 368999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467          228 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMV  279 (371)
Q Consensus       228 ~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~  279 (371)
                      ..++..+..-|+.+.+....+-...|.+|+.+|..||.++.+++.+|...|.
T Consensus       196 e~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~  247 (251)
T 2fic_A          196 EEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV  247 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998766333333367999999999999999999999988764

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.37  E-value=1e-12  Score=100.05  Aligned_cols=57  Identities=21%  Similarity=0.206  Sum_probs=51.5

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+..++||+|.+||+|.|++.. ++||.|+. +|+.||||++||+.+..
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            35699999999999999999999999999885 89999974 79999999999998754

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.37  E-value=3.1e-13  Score=113.03  Aligned_cols=58  Identities=21%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCee---eEecCCceeeccCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA---GWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~---G~FPsnYVE~i~~l  361 (371)
                      ..|+|+|||.++.++||+|++||+|.|+...++|||.|+++|+.   ||||+|||+.+.+.
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~~   66 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIA   66 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCSS
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecCC
Confidence            46899999999999999999999999998889999999987766   99999999987653

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=8.8e-13  Score=100.24  Aligned_cols=56  Identities=21%  Similarity=0.279  Sum_probs=51.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~  360 (371)
                      ..|+|+|||.+..++||+|.+||+|.|++. +++||.|+ .+|+.||||++||+.+.+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLED-GRQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEHHHeEECCC
Confidence            468999999999999999999999999987 48999999 489999999999998754

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.9e-12  Score=101.50  Aligned_cols=56  Identities=13%  Similarity=0.269  Sum_probs=50.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~  359 (371)
                      ...|+|+|||.+..++||+|++||+|.|++ .+.+||.|+.  +|+.||||++||+.+.
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~   74 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVS   74 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEEC
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEcc
Confidence            346999999999999999999999999998 4789999996  5999999999999764

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.8e-12  Score=98.80  Aligned_cols=57  Identities=23%  Similarity=0.391  Sum_probs=51.6

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCC-CCeeEEEeC-CeeeEecCCceeeccC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECK-GKAGWFPSANVEKRQR  360 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d-~GWweGe~~-Gk~G~FPsnYVE~i~~  360 (371)
                      ..|+|+|||.+..++||+|++||+|.|+...+ +|||.|+.. |+.||||++||+.+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            8 GHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            46999999999999999999999999998764 679999986 9999999999998754

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.35  E-value=1.3e-12  Score=105.34  Aligned_cols=63  Identities=24%  Similarity=0.354  Sum_probs=55.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCC----CCeeEEEeCCe-eeEecCCceeeccCCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP----SGWSEGECKGK-AGWFPSANVEKRQRIPVSN  365 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d----~GWweGe~~Gk-~G~FPsnYVE~i~~lP~sk  365 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...+    +|||.|+++|+ .||||.+||+.+...+..+
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~~~~~   84 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGRK   84 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCBCCST
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCccccC
Confidence            457999999999999999999999999998876    69999998887 9999999999887655443

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.35  E-value=1.8e-12  Score=103.15  Aligned_cols=53  Identities=21%  Similarity=0.374  Sum_probs=49.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceee
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK  357 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~  357 (371)
                      ..|+|+|||.+..++||+|.+||+|.|++. ++|||.|+ .+|+.||||++||+.
T Consensus        32 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             eEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            569999999999999999999999999987 78999999 589999999999974

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.35  E-value=1.1e-13  Score=106.05  Aligned_cols=60  Identities=27%  Similarity=0.437  Sum_probs=54.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeee-EecCCceeeccCCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAG-WFPSANVEKRQRIPV  363 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G-~FPsnYVE~i~~lP~  363 (371)
                      ..++|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.| |||++||+.+...++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~~~   67 (71)
T 1hsq_A            7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEG   67 (71)
T ss_dssp             SCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCCCC
T ss_pred             eEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCccc
Confidence            468999999999999999999999999998899999999988886 999999998765543

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.35  E-value=1.6e-13  Score=106.85  Aligned_cols=56  Identities=20%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i  358 (371)
                      ...|+|+|||.+.+++||+|.+||+|.|++..++|||.|+. +|+.||||++||+..
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEEc
Confidence            35689999999999999999999999999988899999995 899999999999853

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.35  E-value=4.2e-12  Score=104.56  Aligned_cols=60  Identities=23%  Similarity=0.390  Sum_probs=54.8

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      ....++|+|||.+..++||+|.+||+|.|+...++|||.|+.  +|+.||||++||+.+..+
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   87 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI   87 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSSC
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCcc
Confidence            346799999999999999999999999999998999999996  899999999999987543

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.34  E-value=6.6e-13  Score=106.80  Aligned_cols=61  Identities=30%  Similarity=0.439  Sum_probs=52.2

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEe-------------C--CCCeeEEEe--CCeeeEecCCceeeccCCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKV-------------S--PSGWSEGEC--KGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~-------------~--d~GWweGe~--~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ....|+|+|+|.++.++||+|++||+|.|+..             .  +.|||.|+.  +|+.||||+|||+.+.+..
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~~~   87 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGPVA   87 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEEEC
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecccc
Confidence            35679999999999999999999999999842             2  338999986  6999999999999887644

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.33  E-value=9.1e-13  Score=100.59  Aligned_cols=59  Identities=22%  Similarity=0.442  Sum_probs=51.2

Q ss_pred             ceEEEEecCCCCCCCC--CccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEK--ELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~--ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...|+|+|+|.+..++  ||+|++||+|.|+.. ++|||.|+ .+|+.||||++||+.+...+
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~   66 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDGPE   66 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEEEE
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCCCC
Confidence            3568999999998655  999999999999876 78999997 59999999999999876533

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.33  E-value=1.7e-12  Score=103.76  Aligned_cols=57  Identities=25%  Similarity=0.398  Sum_probs=51.9

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      ..|+|+|||.+..++||+|.+||+|.|+.. ++|||.|+.  +|+.||||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            468999999999999999999999999987 579999997  899999999999988654

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.33  E-value=1.3e-12  Score=100.34  Aligned_cols=57  Identities=32%  Similarity=0.521  Sum_probs=51.7

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCceeeccCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~---~Gk~G~FPsnYVE~i~~l  361 (371)
                      ..|+|+|||.+..++||+|.+||+|.|++.. +|||.|+.   +|+.||||++||+.+...
T Consensus        12 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~~   71 (74)
T 2m0y_A           12 KYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEAI   71 (74)
T ss_dssp             SCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCCC
T ss_pred             eEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEeccc
Confidence            4689999999999999999999999999885 89999997   799999999999977543

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=3.4e-12  Score=102.89  Aligned_cols=58  Identities=26%  Similarity=0.538  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe--CC--CCeeEEE--eCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV--SP--SGWSEGE--CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~--~d--~GWweGe--~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|+|.+..++||+|++||+|.|+..  .+  +|||.|+  ++|+.||||++||+.+..
T Consensus        16 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   79 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE   79 (94)
T ss_dssp             CEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCS
T ss_pred             CeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEccc
Confidence            4679999999999999999999999999987  34  8999999  799999999999998753

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.33  E-value=5.7e-12  Score=123.50  Aligned_cols=63  Identities=30%  Similarity=0.460  Sum_probs=58.1

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ..+.|+|+|||.+..++||+|++||+|.|+...++|||.|+++|+.||||++||+.+.+.|..
T Consensus       173 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~  235 (341)
T 2dyb_A          173 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEE  235 (341)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCCT
T ss_pred             CCcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCcc
Confidence            346799999999999999999999999999999999999999999999999999998776644

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.32  E-value=2.7e-12  Score=111.88  Aligned_cols=58  Identities=38%  Similarity=0.614  Sum_probs=53.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+..++||+|++||+|.|+.+. ++|||.|+++|+.||||++||+.+..
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            45799999999999999999999999999884 88999999999999999999998754

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.32  E-value=4.6e-13  Score=105.61  Aligned_cols=59  Identities=29%  Similarity=0.467  Sum_probs=51.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe---------------CCCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV---------------SPSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~---------------~d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|+..               .++|||.|..  +|+.||||++||+.+.+.
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~~   80 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK   80 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCcc
Confidence            4579999999999999999999999999954               2449999964  699999999999987653

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=99.30  E-value=9.1e-11  Score=108.31  Aligned_cols=172  Identities=19%  Similarity=0.243  Sum_probs=117.5

Q ss_pred             chhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhh-hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017467           79 GTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCR-YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLS  154 (371)
Q Consensus        79 ~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~k-Yg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~  154 (371)
                      ..+.++|+   |+.+++++..+       ...||++|.. ||.+++    +   ..++   +.....++.++.+|...+.
T Consensus        52 ~~~~l~k~~~~y~~~~~~~~~~-------~~~l~~~~~~l~~~~~~----~---~~~~---~~~~~~~~~~~~~~~~~~~  114 (244)
T 1uru_A           52 SANRLQKEFNNYIRCVRAAQAA-------SKTLMDSVCEIYEPQWS----G---YDAL---QAQTGASESLWADFAHKLG  114 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHSCTTST----T---HHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCCCCC----C---chHH---HHHHHHHHHHHHHHHHHHH
Confidence            44566666   56666665543       2368899888 666654    2   1233   3334458889999999999


Q ss_pred             hhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHH
Q 017467          155 SQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKAN  226 (371)
Q Consensus       155 ~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~  226 (371)
                      ++|++||+.++. ...++        .++||||+-+  +.+       .+-+.|...  ..+ ..+|.+|+++|++.+..
T Consensus       115 ~~vi~Pl~~~~~-~~~~i~~~ikKR~~k~lDyD~~~--~~l-------~kl~~k~~k--~kd-~~kl~~ae~el~~ak~~  181 (244)
T 1uru_A          115 DQVLIPLNTYTG-QFPEMKKKVEKRNRKLIDYDGQR--HSF-------QNLQANANK--RKD-DVKLTKGREQLEEARRT  181 (244)
T ss_dssp             TTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHTTTCB--TTB-CCTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHH--HHH-------HHHHhcccc--Ccc-HHHHHHHHHHHHHHHHH
Confidence            999999999984 44332        4555444433  322       222212100  122 25888899999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467          227 MAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  280 (371)
Q Consensus       227 m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s  280 (371)
                      +..++..+..-|+.+.+....+-...|.+|+.++..||.++..+...|..-+..
T Consensus       182 ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~  235 (244)
T 1uru_A          182 YEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDK  235 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999987763333334679999999999999999988888776644

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.30  E-value=2.3e-12  Score=108.63  Aligned_cols=57  Identities=33%  Similarity=0.488  Sum_probs=51.8

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEE-----eCCCCeeEEEe----------CCeeeEecCCceeec
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRK-----VSPSGWSEGEC----------KGKAGWFPSANVEKR  358 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~-----~~d~GWweGe~----------~Gk~G~FPsnYVE~i  358 (371)
                      ....|+|+|+|.+..++||+|++||+|.|+.     ..++|||.|+.          +|+.||||++||+.+
T Consensus        43 ~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           43 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             cceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            4567999999999999999999999999999     78899999976          388999999999876

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.29  E-value=2.7e-12  Score=108.68  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=53.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~---~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...++|||.|+.   +|+.||||++||+.+.+.
T Consensus         3 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~   64 (120)
T 2kym_A            3 PLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLM   64 (120)
T ss_dssp             CCEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSS
T ss_pred             CEEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCC
Confidence            35689999999999999999999999999999999999985   688899999999988654

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.25  E-value=1.4e-11  Score=104.27  Aligned_cols=56  Identities=27%  Similarity=0.420  Sum_probs=51.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~---~Gk~G~FPsnYVE~i~  359 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|++.. +|||.|++   +|+.||||++||+.+.
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            35799999999999999999999999999885 69999998   8999999999998764

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.24  E-value=9.9e-12  Score=116.89  Aligned_cols=58  Identities=26%  Similarity=0.475  Sum_probs=54.5

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ..++|+|||.+.+++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+...
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   60 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDM   60 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGS
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCcc
Confidence            5689999999999999999999999999999999999999999999999999987654

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.23  E-value=1.8e-11  Score=95.23  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=45.2

Q ss_pred             EEEecCCCCC---CCCCccCCCCCEEEEEEeC-CCCeeEEE--eCCeeeEecCCceeecc
Q 017467          306 AEAIHPFTAA---SEKELSLGVGDYVVVRKVS-PSGWSEGE--CKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       306 arALydfea~---~~~ELsf~~GDiI~Vl~~~-d~GWweGe--~~Gk~G~FPsnYVE~i~  359 (371)
                      +.++|+|.+.   .++||+|++||+|.|++.. ++|||.|+  .+|+.||||+|||+.+.
T Consensus        18 ~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           18 FQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             CSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            4556666664   3589999999999999984 89999999  58999999999998653

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.22  E-value=1.4e-11  Score=93.69  Aligned_cols=49  Identities=33%  Similarity=0.559  Sum_probs=40.8

Q ss_pred             CCCCCCCCCccCCCCCEEEEEEe-CCCCeeEEE--eCCeeeEecCCceeecc
Q 017467          311 PFTAASEKELSLGVGDYVVVRKV-SPSGWSEGE--CKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       311 dfea~~~~ELsf~~GDiI~Vl~~-~d~GWweGe--~~Gk~G~FPsnYVE~i~  359 (371)
                      +|.+.+++||+|++||+|.|++. .++|||.|+  .+|+.||||++||+.+.
T Consensus        18 ~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           18 PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             CCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            33334455999999999999998 688999995  68999999999998753

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.21  E-value=1.1e-11  Score=115.14  Aligned_cols=57  Identities=33%  Similarity=0.488  Sum_probs=52.0

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEE-----eCCCCeeEEEe----------CCeeeEecCCceeec
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRK-----VSPSGWSEGEC----------KGKAGWFPSANVEKR  358 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~-----~~d~GWweGe~----------~Gk~G~FPsnYVE~i  358 (371)
                      ....|+|||+|.+...+||+|.+||+|.|+.     ..++|||.|+.          +|+.||||.|||+.+
T Consensus       141 ~~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          141 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             CCEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             cceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            3457999999999999999999999999999     78899999996          499999999999875

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.21  E-value=1.6e-11  Score=111.77  Aligned_cols=58  Identities=29%  Similarity=0.578  Sum_probs=54.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+..++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus       158 ~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEECC
T ss_pred             ceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECCC
Confidence            4579999999999999999999999999999999999999999999999999998753

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.17  E-value=2.4e-11  Score=107.91  Aligned_cols=55  Identities=20%  Similarity=0.363  Sum_probs=51.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceee
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK  357 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~  357 (371)
                      ...++|+|||.+..++||+|.+||+|.|++..++|||.|+ .+|+.||||+|||+.
T Consensus       118 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          118 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             ccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            4579999999999999999999999999999999999999 599999999999974

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.17  E-value=1.9e-11  Score=110.78  Aligned_cols=60  Identities=32%  Similarity=0.475  Sum_probs=55.5

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ....|+|+|||.+..++||+|.+||+|.|+...++|||.|+.+|+.||||++||+.+...
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   69 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSP   69 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCS
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccc
Confidence            356799999999999999999999999999998999999999999999999999987654

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.16  E-value=4.2e-11  Score=108.44  Aligned_cols=58  Identities=29%  Similarity=0.309  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|+|.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+..
T Consensus        81 ~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             ceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence            3568999999999999999999999999999899999999999999999999998754

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.15  E-value=3.4e-11  Score=116.28  Aligned_cols=58  Identities=38%  Similarity=0.553  Sum_probs=53.8

Q ss_pred             eEEEEecCCC--CCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          304 FLAEAIHPFT--AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfe--a~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ..|+|+|||.  +..++||+|.+||+|.|++..++|||.|+++|+.||||+|||+.+...
T Consensus       238 ~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (304)
T 2eyz_A          238 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ  297 (304)
T ss_dssp             CCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSC
T ss_pred             EEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCCC
Confidence            4689999999  669999999999999999999999999999999999999999988654

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.12  E-value=1.5e-11  Score=114.20  Aligned_cols=62  Identities=26%  Similarity=0.429  Sum_probs=56.3

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccCCCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ....|+|+|||.+..++||+|++||+|.|+++.++|||.|+ .+|+.||||+|||+.+.+.++
T Consensus       135 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~  197 (230)
T 2dvj_A          135 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA  197 (230)
T ss_dssp             CCCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSCC
T ss_pred             cceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCCc
Confidence            34568999999999999999999999999999999999999 799999999999999876543

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.12  E-value=7.2e-11  Score=119.24  Aligned_cols=59  Identities=27%  Similarity=0.481  Sum_probs=55.2

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ....|+|+|||.+.+++||+|.+||+|.|+...++|||.|+++|+.||||++||+.+.+
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   87 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVN   87 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccC
Confidence            35689999999999999999999999999999999999999999999999999998754

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.09  E-value=1.2e-10  Score=103.34  Aligned_cols=57  Identities=19%  Similarity=0.418  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+..++||+|.+||+|.|+.. +.+||.|+.  +|+.||||++||+....
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~~   70 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANS   70 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccccc
Confidence            3579999999999999999999999999988 789999998  89999999999997643

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.09  E-value=1e-10  Score=105.60  Aligned_cols=58  Identities=26%  Similarity=0.379  Sum_probs=51.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~---~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|++..+ |||.|++   +|+.||||++||+.+...
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~~   77 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEVT   77 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC-
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEeccc
Confidence            357999999999999999999999999998866 6999998   789999999999987653

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.08  E-value=9.2e-11  Score=120.14  Aligned_cols=59  Identities=20%  Similarity=0.376  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||++..++||+|++||+|.|++..++|||.|+.  +|+.||||+|||+....+
T Consensus        85 ~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l  145 (535)
T 2h8h_A           85 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI  145 (535)
T ss_dssp             --CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             CcEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccccc
Confidence            34699999999999999999999999999999999999998  899999999999986543

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.06  E-value=2e-10  Score=86.10  Aligned_cols=46  Identities=22%  Similarity=0.434  Sum_probs=42.7

Q ss_pred             CCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          316 SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       316 ~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      +++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+.+.
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   47 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   47 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCS
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCCC
Confidence            5789999999999999999999999999999999999999988654

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=99.06  E-value=3.8e-08  Score=92.66  Aligned_cols=197  Identities=8%  Similarity=0.076  Sum_probs=144.3

Q ss_pred             hhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017467           75 RSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHVEKEQEDFNRLL  153 (371)
Q Consensus        75 ~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~-~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~  153 (371)
                      ..+-.-+..=+.+++.+..++.+|.-.....+.+++.+..|+... +.++++..++.|+..||++++.|...+..|..++
T Consensus        28 ~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~~l~~~~  107 (265)
T 2q12_A           28 EDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQL  107 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555566777888888888777777789999999999852 2134677899999999999999999999999999


Q ss_pred             HhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHH
Q 017467          154 SSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKE  233 (371)
Q Consensus       154 ~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgke  233 (371)
                      ...|++||+.++.+|+++. +.+...|++.+.++++-..-+.. +.|.+   .+|  ..++.|+.+|...+..+....-+
T Consensus       108 ~~~~~~PL~~f~~~dlk~~-ke~kk~fdk~~~~yd~al~k~~~-~~k~k---~~e--~~l~Ea~~~l~~~Rk~f~~~~ld  180 (265)
T 2q12_A          108 ADAMMFPITQFKERDLKEI-LTLKEVFQIASNDHDAAINRYSR-LSKKR---END--KVKYEVTEDVYTSRKKQHQTMMH  180 (265)
T ss_dssp             HHHTHHHHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHTSC---CCH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCCC---cch--hhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998754 45555777777676544433321 22222   122  45778999999999998877778


Q ss_pred             HHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHH-HhHHHH
Q 017467          234 AAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG-DVEAEM  278 (371)
Q Consensus       234 a~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~-~L~~~l  278 (371)
                      ....|+++.....---+..|..+++++..|+++..+++. ++...+
T Consensus       181 yv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~  226 (265)
T 2q12_A          181 YFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFL  226 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888776633222368899999999999999998873 554443

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.04  E-value=3.5e-10  Score=109.15  Aligned_cols=61  Identities=26%  Similarity=0.435  Sum_probs=55.6

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccCCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ....|+|+|+|.+..++||+|++||+|.|+...++|||.|+ .+|+.||||++||+.+...+
T Consensus       133 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~  194 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS  194 (304)
T ss_dssp             CCCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCST
T ss_pred             cceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCCC
Confidence            34579999999999999999999999999999999999999 69999999999999886543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.99  E-value=5.6e-10  Score=111.52  Aligned_cols=59  Identities=25%  Similarity=0.456  Sum_probs=53.5

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEe-CCCCeeEEEeC-CeeeEecCCceeeccCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGECK-GKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~-~d~GWweGe~~-Gk~G~FPsnYVE~i~~lP  362 (371)
                      ..|+|+|||.+..++||+|++||+|.|++. .++|||.|+.. |+.||||+|||++...+|
T Consensus        12 ~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~~~   72 (450)
T 1k9a_A           12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK   72 (450)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCC
T ss_pred             CEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccccc
Confidence            469999999999999999999999999998 67899999986 999999999999876643

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=98.98  E-value=2.7e-10  Score=88.62  Aligned_cols=48  Identities=23%  Similarity=0.428  Sum_probs=44.2

Q ss_pred             CCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          314 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       314 a~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      +.+++||+|++||+|.|+...++|||.|+++|+.||||++||+.+.+.
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   49 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   49 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCS
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCC
Confidence            467899999999999999998999999999999999999999988654

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.51  E-value=6.2e-11  Score=114.36  Aligned_cols=59  Identities=32%  Similarity=0.460  Sum_probs=53.1

Q ss_pred             ceEEEEecCCCCCC--CCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAAS--EKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~--~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||.++.  ++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+...
T Consensus       237 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (303)
T 2lqn_A          237 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ  297 (303)
Confidence            45799999998654  779999999999999999999999999999999999999988653

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.96  E-value=5e-10  Score=111.94  Aligned_cols=58  Identities=21%  Similarity=0.389  Sum_probs=53.6

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      ..|+|+|||.+..++||+|++||+|.|++..++|||.|+.  +|+.||||+|||+....+
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l   62 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccccc
Confidence            3689999999999999999999999999998999999998  899999999999986544

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=98.95  E-value=5e-10  Score=101.86  Aligned_cols=55  Identities=31%  Similarity=0.484  Sum_probs=46.9

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCceeecc
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      .|+|+|||.+..++||+|++||+|.|+... ++|||.|+.+|+.||||.+||+...
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   57 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   57 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCC
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCccccccc
Confidence            489999999999999999999999998876 6799999999999999999998653

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.95  E-value=6.9e-10  Score=107.05  Aligned_cols=56  Identities=20%  Similarity=0.351  Sum_probs=52.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i  358 (371)
                      ...|+|+|||.+..++||+|.+||+|.|++..++|||.|+. +|+.||||++||+..
T Consensus       147 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~  203 (308)
T 3qwy_A          147 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ  203 (308)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC
T ss_pred             ceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccc
Confidence            35799999999999999999999999999999999999996 999999999999943

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.94  E-value=8.5e-11  Score=113.45  Aligned_cols=58  Identities=17%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             ceEEEEecCCCC--CCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTA--ASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea--~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|+|.+  ..++||+|.+||+|.|+...++|||.|+++|+.||||.|||+.+.+
T Consensus       247 ~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          247 PAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEecC
Confidence            346899999955  4569999999999999999889999999999999999999998754

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.93  E-value=9.6e-10  Score=114.11  Aligned_cols=58  Identities=24%  Similarity=0.343  Sum_probs=53.7

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|||.|++++||+|++||+|.|+...++|||.|+  ++|+.|+||+|||+.+..
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~  501 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIE  501 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEccc
Confidence            3568999999999999999999999999999999999999  689999999999998754

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.86  E-value=2.3e-09  Score=108.56  Aligned_cols=59  Identities=25%  Similarity=0.434  Sum_probs=53.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||++..++||+|++||+|.|++.. +.+||.|+.+|..||||+|||+.+.++
T Consensus        43 ~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~l  102 (495)
T 1opk_A           43 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSL  102 (495)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSSG
T ss_pred             CcEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccccc
Confidence            34699999999999999999999999999877 789999999999999999999986543

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.37  E-value=2.5e-10  Score=110.07  Aligned_cols=61  Identities=20%  Similarity=0.353  Sum_probs=55.3

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccCCC
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ....|+|+|||.+..++||+|++||+|.|+...++|||.|+ .+|+.||||++||+.+.+.+
T Consensus       124 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~  185 (303)
T 2lqn_A          124 NLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSS  185 (303)
Confidence            34579999999999999999999999999999899999999 48999999999999886643

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.83  E-value=3.1e-09  Score=106.13  Aligned_cols=57  Identities=25%  Similarity=0.435  Sum_probs=51.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+..++||+|++||+|.|++. ++|||.|+  .+|+.||||+|||..+..
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccccc
Confidence            3468999999999999999999999999988 58999999  689999999999987643

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=98.83  E-value=8.5e-07  Score=82.94  Aligned_cols=172  Identities=13%  Similarity=0.146  Sum_probs=122.6

Q ss_pred             chhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHh-hhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017467           79 GTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCC-RYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLS  154 (371)
Q Consensus        79 ~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~-kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~  154 (371)
                      +.+++||+   +..++.++...+   .    .+++++. =|+..|+    +.      -.+......++..+..+...|.
T Consensus        48 ~~~kL~k~~k~y~~ai~~~~~~q---~----~~~~~l~~~y~~~~~----~~------~~~~~~~~~~~~l~~~~~~~l~  110 (237)
T 4avm_A           48 EGHKLYKDLKNFLSAVKVMHESS---K----RVSETLQEIYSSEWD----GH------EELKAIVWNNDLLWEDYEEKLA  110 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHSCTTST----TH------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHhCCccC----cH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            46789988   455555555443   2    3444443 2776665    21      1344455566778999999999


Q ss_pred             hhhhhHHHHhhhcCh------hhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHH
Q 017467          155 SQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMA  228 (371)
Q Consensus       155 ~~~~~PL~~~~~~~~------~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~  228 (371)
                      +.|+.||..+..-.|      .++.++|. |||+.|+.++....       |.    ..| ..||..||++++..+..+.
T Consensus       111 ~~vi~Pl~~~~~~~~~i~k~I~KR~~kll-Dyd~~~~~~~kl~~-------k~----~kd-~~kl~kae~el~~a~~~ye  177 (237)
T 4avm_A          111 DQAVRTMEIYVAQFSEIKERIAKRGRKLV-DYDSARHHLEAVQN-------AK----KKD-EAKTAKAEEEFNKAQTVFE  177 (237)
T ss_dssp             CCCCHHHHHHHHTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHT-------CS----SCC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-------cc----CCc-HHHHHHHHHHHHHHHHHHH
Confidence            999999999987654      24567777 89987777654321       11    123 4799999999999999999


Q ss_pred             HhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467          229 ILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  280 (371)
Q Consensus       229 ~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s  280 (371)
                      .++..+..-|+.+.+-...+-..-+.+++..+..||.....+...|..-|..
T Consensus       178 ~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~  229 (237)
T 4avm_A          178 DLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSK  229 (237)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999987663333333568899999999999999988888776653

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.81  E-value=5.2e-09  Score=83.50  Aligned_cols=53  Identities=28%  Similarity=0.436  Sum_probs=47.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEe----CCeeeEecCCce
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGEC----KGKAGWFPSANV  355 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~----~Gk~G~FPsnYV  355 (371)
                      ...+.|+|||.+.+..||+|++||.+.|++..  +++||.++.    .++.||||+|||
T Consensus        17 ~e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           17 CELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             CEEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             ceEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            45689999999999999999999999999876  489999996    247899999998

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=98.80  E-value=1.3e-06  Score=86.36  Aligned_cols=180  Identities=7%  Similarity=0.053  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 017467           85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA  163 (371)
Q Consensus        85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~-~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~  163 (371)
                      +.+++.++.++.+|.-.......+++.+..|+.+. |.+.++..++.++..||++++.|+..+..|..++...|++||+.
T Consensus        38 ~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~l~~~~~~~~~~PL~~  117 (385)
T 2q13_A           38 NQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQ  117 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555444444456778888888852 21235667889999999999999999999999999999999999


Q ss_pred             hhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017467          164 MITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA  243 (371)
Q Consensus       164 ~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~  243 (371)
                      ++.+|+++. +.+-..|++.+.++++-..-+    ...+.+..++  ..+..|+..|...+..+....-+....|+.++.
T Consensus       118 f~~~di~~~-ke~kk~fek~~~~yd~al~k~----~~~~k~k~~e--~~~~ea~~~l~~~rk~f~~~~ldy~~~l~~l~~  190 (385)
T 2q13_A          118 FKERDLKEI-LTLKEVFQIASNDHDAAINRY----SRLSKKREND--KVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQY  190 (385)
T ss_dssp             HHHTHHHHH-HHHHHHHHHHHHHHHHHHHHH----HTCCSSSCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----hcCCCCCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988764 344445555555554333222    1121111122  345668888888888876666666677777765


Q ss_pred             HhhHhhHhhHHHHHHHHHHHHHHHHHHH
Q 017467          244 QQHRLTFQRLVAMVEGEKNYHLRIAAIL  271 (371)
Q Consensus       244 qqqrlt~~~L~~~veae~~yhq~~~~IL  271 (371)
                      ....--+..|..+++++..|+.+..+++
T Consensus       191 rk~~e~le~l~~~~~a~~~ff~~g~~~~  218 (385)
T 2q13_A          191 KKKIALLEPLLGYMQAQISFFKMGSENL  218 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333336789999999999998888764

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.70  E-value=2.3e-08  Score=74.30  Aligned_cols=42  Identities=19%  Similarity=0.314  Sum_probs=38.9

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK  344 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~  344 (371)
                      ...|+|+|||.+..++||+|++||+|.|+...+++||.|+++
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEeC
Confidence            457999999999999999999999999999999999999864

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.70  E-value=3.4e-09  Score=102.20  Aligned_cols=55  Identities=22%  Similarity=0.396  Sum_probs=49.0

Q ss_pred             eEEEEecCCCCCCCC-----CccCCCCCEEEEEEeCCCCeeEEEeCC------eeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEK-----ELSLGVGDYVVVRKVSPSGWSEGECKG------KAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~-----ELsf~~GDiI~Vl~~~d~GWweGe~~G------k~G~FPsnYVE~i  358 (371)
                      ..++|+|||++..++     +|+|++||++.|++..++|||.|+..+      +.||||+||+.+.
T Consensus         2 ~~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            468999999998877     999999999999999999999999743      7899999999754

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.58  E-value=2.3e-08  Score=106.16  Aligned_cols=59  Identities=22%  Similarity=0.324  Sum_probs=50.5

Q ss_pred             eEEEEecCCC---CCCCCCccCCCCCEEEEEEe-----CCCCeeEEE--eCCeeeEecCCceeeccCCC
Q 017467          304 FLAEAIHPFT---AASEKELSLGVGDYVVVRKV-----SPSGWSEGE--CKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       304 ~~arALydfe---a~~~~ELsf~~GDiI~Vl~~-----~d~GWweGe--~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      .+++|+|||.   +.++++|+|++||+|.+...     .++|||.|+  ++|+.|+||.+||..+.+++
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl~  642 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVT  642 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCSS
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCCC
Confidence            4699999998   78899999999999999887     478999999  68999999999999987653

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.50  E-value=3.2e-06  Score=81.04  Aligned_cols=57  Identities=12%  Similarity=0.046  Sum_probs=46.6

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...++|+|||.+.   ++++.+|+.+++++..++.||.++. +|..|++|++|+....|-|
T Consensus       198 ~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~p~~  255 (283)
T 3pe0_A          198 RLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPPPNQ  255 (283)
T ss_dssp             CEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCSCCH
T ss_pred             CceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCCCCH
Confidence            3568999999774   7999999999999998889999995 7889999999998665544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.46  E-value=1.6e-07  Score=85.05  Aligned_cols=60  Identities=18%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCC---eeEEEeCCeeeEecCCceeeccCCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSG---WSEGECKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~G---WweGe~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ..+.++|+|.+..+.+|.+..|++|.|+.+.+.+   ||.+..+|+.||||.+||+.+...++
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~~~~  233 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKP  233 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC----
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCcCCc
Confidence            3468999999999999999999999998776655   99999999999999999998865543

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.38  E-value=2.4e-07  Score=76.52  Aligned_cols=57  Identities=11%  Similarity=0.177  Sum_probs=49.3

Q ss_pred             ceEEEEecCC--CCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeecc
Q 017467          303 YFLAEAIHPF--TAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQ  359 (371)
Q Consensus       303 ~~~arALydf--ea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i~  359 (371)
                      ...++|+|+|  ...+..+|+|++|+++.|+...+.+||.++. .|+.|++|.+||+.+.
T Consensus        39 l~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d   98 (102)
T 1ri9_A           39 LYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADND   98 (102)
T ss_dssp             SSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC--
T ss_pred             EEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhcccc
Confidence            3457888999  6677899999999999999999999999996 8999999999998653

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.36  E-value=3.6e-07  Score=90.01  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=46.6

Q ss_pred             ceEEEEecCCCCCCCC-------CccCCCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCc
Q 017467          303 YFLAEAIHPFTAASEK-------ELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSAN  354 (371)
Q Consensus       303 ~~~arALydfea~~~~-------ELsf~~GDiI~Vl~~~d~GWweGe~---~Gk~G~FPsnY  354 (371)
                      ...++|+|||++..++       +|+|..||++.|++..+++||.|++   +|..|+||+++
T Consensus        38 ~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             cEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            4679999999998766       4999999999999999999999997   57899999987

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.35  E-value=3.7e-07  Score=81.04  Aligned_cols=57  Identities=26%  Similarity=0.497  Sum_probs=52.4

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ....++++|+|.+..+.+|.|..||++.|....+.+||.+...|..|+||.+|+...
T Consensus        13 ~~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHH
T ss_pred             CceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccc
Confidence            456789999999999999999999999999999999999999999999999998653

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.31  E-value=1.5e-06  Score=70.39  Aligned_cols=59  Identities=24%  Similarity=0.126  Sum_probs=48.5

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCC----CeeEEEeCCeeeEecCCceeeccCCCC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPS----GWSEGECKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~----GWweGe~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      .+.+..+|.+..+-||++.+||+|.|+++.|+    +||....+|..||||++|++.+.+.+.
T Consensus        19 LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~~   81 (92)
T 1ug1_A           19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS   81 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSS
T ss_pred             eEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCCC
Confidence            46677777778888999999999999987644    455566699999999999999988664

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.13  E-value=2e-06  Score=91.95  Aligned_cols=57  Identities=21%  Similarity=0.351  Sum_probs=49.7

Q ss_pred             cceEEEEecCCCCCCCCC-----ccCCCCCEEEEEEeCCCCeeEEEeC------CeeeEecCCceeec
Q 017467          302 VYFLAEAIHPFTAASEKE-----LSLGVGDYVVVRKVSPSGWSEGECK------GKAGWFPSANVEKR  358 (371)
Q Consensus       302 ~~~~arALydfea~~~~E-----Lsf~~GDiI~Vl~~~d~GWweGe~~------Gk~G~FPsnYVE~i  358 (371)
                      ...+++|+|||++..+++     |+|++||++.|++..+++||.++..      +..|+||++|+.+.
T Consensus       426 ~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          426 RGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             cceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHH
Confidence            346789999999998888     9999999999999999999999963      35699999998653

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.10  E-value=2.4e-06  Score=85.43  Aligned_cols=55  Identities=20%  Similarity=0.205  Sum_probs=48.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe---CCCCeeEEEeCC------eeeEecCCceee
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGECKG------KAGWFPSANVEK  357 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~---~d~GWweGe~~G------k~G~FPsnYVE~  357 (371)
                      ..+++|+|||++..+.+|+|..||++.|+..   .+.+||.+.+.+      ..|+||++|+.+
T Consensus       106 ~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          106 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            4678999999999999999999999999988   578999999632      479999999875

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.07  E-value=2.3e-06  Score=69.96  Aligned_cols=54  Identities=24%  Similarity=0.388  Sum_probs=47.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCC--CCeeEEEe-CCeeeEecCCceee
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGEC-KGKAGWFPSANVEK  357 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d--~GWweGe~-~Gk~G~FPsnYVE~  357 (371)
                      ...++|+|+ ...+..+|+|.+|+++.|+...+  +|||.++. .|+.|++|.+||+.
T Consensus        28 l~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           28 IHLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             CEEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             EEEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEE
Confidence            457899999 46788899999999999998765  78999995 89999999999985

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.06  E-value=3e-06  Score=82.55  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=45.5

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCC---------eeEEEeC------CeeeEecCCceee
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSG---------WSEGECK------GKAGWFPSANVEK  357 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~G---------WweGe~~------Gk~G~FPsnYVE~  357 (371)
                      +.++++|+|||++..+++|+|..||++.|+...++|         ||.+..-      +..|++|++|+.+
T Consensus         3 dsfyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            3 DSFYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             CCEEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             ccEEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            456789999999999999999999999999877665         9999862      2679999998754

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=98.02  E-value=0.00023  Score=72.53  Aligned_cols=57  Identities=12%  Similarity=0.100  Sum_probs=49.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeeccCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ...++|+|||.   ..+.++.+||.+++....++.||..+. +|..|++|+.|+.+..|-|
T Consensus       283 ~~~V~alcdy~---~~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipppd~  340 (450)
T 3r6n_A          283 PIILRALCDYK---QDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNP  340 (450)
T ss_dssp             CCEEEESSCEE---ETTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCSCCH
T ss_pred             CceEEEecccc---CCeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCCCCH
Confidence            45689999998   478999999999999999999999996 6899999999997665544

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.94  E-value=8e-06  Score=83.65  Aligned_cols=55  Identities=18%  Similarity=0.174  Sum_probs=48.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEe---CCCCeeEEEe---CC---eeeEecCCceee
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGEC---KG---KAGWFPSANVEK  357 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~---~d~GWweGe~---~G---k~G~FPsnYVE~  357 (371)
                      .++++++|+|++..+.+|+|+.||++.|+..   .+.+||.+.+   ++   ..|+||++|+.+
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            3578999999999999999999999999988   6789999986   33   589999999864

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=97.86  E-value=0.0031  Score=62.47  Aligned_cols=183  Identities=9%  Similarity=0.148  Sum_probs=111.7

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHH
Q 017467           67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKE  145 (371)
Q Consensus        67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~-~~~~~~l~~A~~~~g~a~~~~~~~  145 (371)
                      ...|.+|+.+++..-+-++++..++..|              ++.+..|..+... ...+..+..++..|+.+.+.+...
T Consensus        57 ~~~l~kl~k~~~~~~~~~~~~~~a~~~f--------------~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~  122 (407)
T 4h8s_A           57 TDYTNQLLQAMQRVYGAQNEMCLATQQL--------------SKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLL  122 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777666666666666555544              3444445443320 112334677788999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHH
Q 017467          146 QEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKA  225 (371)
Q Consensus       146 ~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~  225 (371)
                      +..|...+...+++||+.++.+++++. +-+-..|++....+++...-+.. +.|.+    +. ......+...+.+.+.
T Consensus       123 ~~~L~~~~~~~i~~pL~~f~k~di~~~-ke~kK~Fek~~~~Yd~~l~Ky~~-~~k~k----~~-~~~~~e~~~~l~~~Rk  195 (407)
T 4h8s_A          123 HTELAKQLADTMVLPIIQFREKDLTEV-STLKDLFGLASNEHDLSMAKYSR-LPKKK----EN-EKVKTEVGKEVAAARR  195 (407)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-SCSTT----CC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-ccccC----Cc-hHHHHHHHHHHHHHHH
Confidence            999999999999999999999887643 23333444444444333333211 11211    12 1223345566666666


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHH
Q 017467          226 NMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAI  270 (371)
Q Consensus       226 ~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~I  270 (371)
                      .+....-+....|..+......--+..|..+++++..|+.+..+.
T Consensus       196 ~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~  240 (407)
T 4h8s_A          196 KQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEM  240 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655444556666766655333333567888999999888777664

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.73  E-value=2.3e-05  Score=75.57  Aligned_cols=53  Identities=19%  Similarity=0.351  Sum_probs=39.1

Q ss_pred             ceEEEEecCCCCCCCC-----CccCCCCCEEEEEEeCCCCeeEEEe---C---CeeeEecCCce
Q 017467          303 YFLAEAIHPFTAASEK-----ELSLGVGDYVVVRKVSPSGWSEGEC---K---GKAGWFPSANV  355 (371)
Q Consensus       303 ~~~arALydfea~~~~-----ELsf~~GDiI~Vl~~~d~GWweGe~---~---Gk~G~FPsnYV  355 (371)
                      ..+++|+|||+|..++     .|+|+.||++.|.+..++|||.+..   +   +..|++|+...
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~   68 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRR   68 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHH
Confidence            3678999999998665     6999999999999999999999985   2   24799998543

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=97.65  E-value=5.3e-07  Score=88.21  Aligned_cols=55  Identities=15%  Similarity=0.260  Sum_probs=43.3

Q ss_pred             EEEecCCCC----CCCCCccC--CCCCEEEEEEeCCCCeeEEEeCC---eeeEecCC-ceeeccC
Q 017467          306 AEAIHPFTA----ASEKELSL--GVGDYVVVRKVSPSGWSEGECKG---KAGWFPSA-NVEKRQR  360 (371)
Q Consensus       306 arALydfea----~~~~ELsf--~~GDiI~Vl~~~d~GWweGe~~G---k~G~FPsn-YVE~i~~  360 (371)
                      +.|+|+|.+    .++.+|+|  .+||+|.|+...++|||.|+++|   +.||||.+ ||+....
T Consensus       269 ~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~~~  333 (341)
T 2dyb_A          269 LKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDN  333 (341)
T ss_dssp             HHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEECC-
T ss_pred             hhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEecCC
Confidence            356788876    55666666  89999999999999999999754   55699998 8776654

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A

Probab=97.60  E-value=0.013  Score=55.47  Aligned_cols=177  Identities=11%  Similarity=0.155  Sum_probs=120.2

Q ss_pred             HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467           87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus        87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      |.+++.+.+.++.--+++..++||....  +- |   . -.+|.+|..+.+.++.++.-.+.+...+-..||.||..-+.
T Consensus        41 Y~~al~~~~~a~~~f~dal~kia~~A~~--s~-g---s-~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie  113 (253)
T 2ykt_A           41 YEKALAGVTYAAKGYFDALVKMGELASE--SQ-G---S-KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVE  113 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-S---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc--Cc-c---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777777777777888888876553  11 2   2 46999999999999999999999999999999999999888


Q ss_pred             cChhhh---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCccc-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-H
Q 017467          167 GAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPEN-VAKLHAAEARMQELKANMAILGKEAAAALAA-I  241 (371)
Q Consensus       167 ~~~~e~---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~-~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~-v  241 (371)
                      .+.+..   -++-..+|++.+.+++....|+.|-+.|.+...++.. .+++.++.+-+.+-+..+...   ...++-. +
T Consensus       114 ~d~K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~le~~---~~~~lr~aL  190 (253)
T 2ykt_A          114 LDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENY---VSDGYKTAL  190 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            777754   3666678899999988888887544433321112210 135555555454444443333   4444443 2


Q ss_pred             HHHhhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467          242 EAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       242 e~qqqrlt--~~~L~~~veae~~yhq~~~~IL~~  273 (371)
                      -++-.|++  +..++.+++.+..||.++..+|..
T Consensus       191 ~EERrRycflv~~~~~v~~~~~~~h~~~~~~L~~  224 (253)
T 2ykt_A          191 TEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQ  224 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22345555  478899999999999988777665

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}

Probab=97.33  E-value=0.019  Score=54.32  Aligned_cols=172  Identities=15%  Similarity=0.207  Sum_probs=113.2

Q ss_pred             HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467           87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus        87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      |-+++.|.+.++.--.|+..++||.-.  ++-.+    .-.+|.+|..+.+.++.|+.-.+.+...+-..+|-||..-+.
T Consensus        43 y~~al~~~~~a~~af~Da~qKvad~A~--~s~g~----s~elG~~L~~i~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e  116 (253)
T 2d1l_A           43 LQSQLRTTVVAAAAFLDAFQKVADMAT--NTRGG----TREIGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQME  116 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677777777777788778877554  22211    246999999999999999999999999999999999998888


Q ss_pred             cChhhh---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC---CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017467          167 GAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP---NPENVAKLHAAEARMQELKANMAILGKEAAAALAA  240 (371)
Q Consensus       167 ~~~~e~---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~---~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~  240 (371)
                      -+-+-.   -++-...|++.|.+......+..|-+.|.|..+   ..+.-.-+..|-   ++.......|...-..++-.
T Consensus       117 ~d~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~---q~v~~~~~~le~~~~~~~r~  193 (253)
T 2d1l_A          117 EWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSAL---QDVNDKYLLLEETEKQAVRK  193 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            555433   233346789999999999999887776665421   122112233232   33333333333333344443


Q ss_pred             -HHHHhhHhh--HhhHHHHHHHHHHHHHHH
Q 017467          241 -IEAQQHRLT--FQRLVAMVEGEKNYHLRI  267 (371)
Q Consensus       241 -ve~qqqrlt--~~~L~~~veae~~yhq~~  267 (371)
                       +-++-.|++  +.+|+..++.+..++...
T Consensus       194 AL~EERrRycflv~~l~pv~~~e~~~~~e~  223 (253)
T 2d1l_A          194 ALIEERGRFCTFISMLRPVIEEEISMLGEI  223 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGGGH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhhH
Confidence             223345555  477888888899888644

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*

Probab=97.13  E-value=0.037  Score=51.48  Aligned_cols=177  Identities=15%  Similarity=0.219  Sum_probs=117.6

Q ss_pred             HHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 017467           86 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  165 (371)
Q Consensus        86 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  165 (371)
                      .+++-++.++..=+--...=+.||+++.--|..-+      .++.+...+|++++.|++-...|...|+- |+.-|++++
T Consensus        25 ~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p------~l~~~f~~~~~~~r~~~k~g~~Ll~~L~~-f~s~l~T~~   97 (224)
T 1i4d_A           25 SVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP------ELQEEFGYNAETQKLLCKNGETLLGAVNF-FVSSINTLV   97 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc------HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHH
Confidence            35555555555545444445589999999998744      48999999999999999999999988864 777788888


Q ss_pred             hcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017467          166 TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ  245 (371)
Q Consensus       166 ~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qq  245 (371)
                      ++++ +|.+.-...|..-|-|+.+-..+++.=...-+   .++...+++.+...+++.|..+..|-.+..--|.-+++.-
T Consensus        98 ~kaI-~DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~~---~~~~l~rve~~q~~~~~ak~kf~kLR~DV~~KleLLd~~r  173 (224)
T 1i4d_A           98 TKTM-EDTLMTVKQYEAARLEYDAYRTDLEELSLGPR---DAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENK  173 (224)
T ss_dssp             HTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhc-cHHHHHHHHHHHHhHhHHHHHhhHHHhhcccc---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            8765 55666666777777776666665532211110   1111124444556666666666666555666666666643


Q ss_pred             hHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 017467          246 HRLTFQRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       246 qrlt~~~L~~~veae~~yhq~~~~IL~~  273 (371)
                      -++-..+|..+..+...||..+.++|+.
T Consensus       174 ~kv~~~qL~~~~~al~~y~~~~~~~l~~  201 (224)
T 1i4d_A          174 IKVMHKQLLLFHNAVSAYFAGNQKQLEQ  201 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3333468999999999999999888854

>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}

Probab=96.92  E-value=0.13  Score=47.75  Aligned_cols=171  Identities=11%  Similarity=0.137  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 017467           85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM  164 (371)
Q Consensus        85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~  164 (371)
                      +.|.+++.|.+.++.--.+++.++||.-..= .  |    .-.||.||+.+.+.++.|....+.+...+-..+|-||..=
T Consensus        37 ~~Y~kAl~a~~~A~~~y~dA~~Kige~A~~S-~--~----skeLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k  109 (222)
T 3ok8_A           37 NNYLRAFHALSEAAEVYFSAIQKIGEQALQS-S--T----SQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKN  109 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S--S----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C--c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466788888888887888888888876441 1  2    2359999999999999999999999999999999999877


Q ss_pred             hhcChhh---hhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017467          165 ITGAPLE---DARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI  241 (371)
Q Consensus       165 ~~~~~~e---~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v  241 (371)
                      +..|-+-   .-++....|+.....+|.-..++.|+..|...  |+.   |   ..   +.....-..|......+.-.+
T Consensus       110 ~e~D~k~i~~~~K~y~~e~k~~~~~leK~~~elkK~~rksqk--~~~---k---~~---e~v~~~q~el~~f~~~s~r~A  178 (222)
T 3ok8_A          110 TKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDK--NAR---E---MK---ESVNRLHAQMQAFVSESKRAA  178 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT--THH---H---HH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc--ChH---H---HH---HHHHHHHhHHHHHHHHHHHHH
Confidence            7655442   24555556666555667777777555433211  332   3   11   222233334555555555543


Q ss_pred             -HHHhhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467          242 -EAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD  273 (371)
Q Consensus       242 -e~qqqrlt--~~~L~~~veae~~yhq~~~~IL~~  273 (371)
                       -++..|++  +..-+++......||..+..+|.+
T Consensus       179 l~EErRRYcFL~ekhc~~~~~~~~~h~k~~~~L~~  213 (222)
T 3ok8_A          179 ELEEKRRYRFLAEKHLLLSNTFLQFLGRARGMLQN  213 (222)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             23345555  367788888899999999888765

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=95.72  E-value=0.81  Score=44.81  Aligned_cols=149  Identities=9%  Similarity=0.045  Sum_probs=87.4

Q ss_pred             hHhHHHhhhhc--cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhhhhhhhhhhHHh
Q 017467          107 KLSEDCCRYGA--ENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLEDARHLAQRYSR  182 (371)
Q Consensus       107 ~l~e~~~kYg~--e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e~~R~L~~dy~r  182 (371)
                      .||..+...|.  ++..+.+...|++|+..+|+.+..+++.-+.-...--..|.|||+.+..  ++.++.    -.+-++
T Consensus       208 ~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~----l~~r~~  283 (366)
T 3dyt_A          208 KIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDI----IGTHKG  283 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHH----HHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            45555555554  2211123346999999999999999988887777777789999987764  122221    111111


Q ss_pred             hhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH-hhH-hhHHHHHHHH
Q 017467          183 MRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR-LTF-QRLVAMVEGE  260 (371)
Q Consensus       183 ~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqr-lt~-~~L~~~veae  260 (371)
                      --+...  .++=..+.+|      ++ ..++..|+.+++.....       +...|...+.  ++ ..+ ..|..+++.+
T Consensus       284 aL~k~~--e~~kl~~~~K------~~-~~~~~~~~~r~e~is~~-------~~~El~rF~~--~r~~Dfk~~l~~yl~~q  345 (366)
T 3dyt_A          284 AIEKVK--ESDKLVATSK------IT-LQDKQNMVKRVSIMSYA-------LQAEMNHFHS--NRIYDYNSVIRLYLEQQ  345 (366)
T ss_dssp             HHHHHH--THHHHHHTTS------SC-HHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHhccC------cc-hhHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            111110  0010012222      33 24677788888777665       4444444433  22 123 4588899999


Q ss_pred             HHHHHHHHHHHHHhHHH
Q 017467          261 KNYHLRIAAILGDVEAE  277 (371)
Q Consensus       261 ~~yhq~~~~IL~~L~~~  277 (371)
                      ..|++..++.+..+...
T Consensus       346 i~~~k~~~~~w~~~l~~  362 (366)
T 3dyt_A          346 VQFYETIAEKLRQALSR  362 (366)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988876543

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=95.11  E-value=0.92  Score=44.90  Aligned_cols=133  Identities=12%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccC
Q 017467          125 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA  204 (371)
Q Consensus       125 ~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~  204 (371)
                      ...|++|+..+|++...+++....-...--..|.|||+.+..  ++...+-+-.+.++.-+..    .+.+|-+.+.   
T Consensus       248 ~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~--ll~s~Kdll~~R~~aL~k~----~ea~kl~~~~---  318 (386)
T 4akv_A          248 SEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQG--LLSNFPDIIHLQKGAFAKV----KESQRMSDEG---  318 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----HHHHHHHHTT---
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----HHHHHHHHhC---
Confidence            346999999999999999988777777777889999998765  2222333333333322222    1111211121   


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH-hhH-hhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017467          205 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR-LTF-QRLVAMVEGEKNYHLRIAAILGDVEAE  277 (371)
Q Consensus       205 ~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqr-lt~-~~L~~~veae~~yhq~~~~IL~~L~~~  277 (371)
                       +++ ..++..|+.+++.....       +...|...+.  ++ ..+ ..|..+++.+..||++.++.++.+...
T Consensus       319 -K~~-~~~~~e~~~r~e~IS~~-------~~~El~rF~~--~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~  382 (386)
T 4akv_A          319 -RMV-QDEADGIRRRCRVVGFA-------LQAEMNHFHQ--RRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRM  382 (386)
T ss_dssp             -SSC-HHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             -Ccc-HHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             244 25666677777776655       4444444433  22 113 468889999999999999988876543

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=94.20  E-value=4  Score=39.09  Aligned_cols=41  Identities=10%  Similarity=0.118  Sum_probs=37.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +.|..|.-.+-..+..+++....|..+|.+++++||+.++.
T Consensus        84 gtl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~  124 (350)
T 3aco_A           84 GTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQK  124 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888888999999999999999999999999999998865

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=94.14  E-value=3.8  Score=38.41  Aligned_cols=41  Identities=10%  Similarity=0.118  Sum_probs=37.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +.|..|.-.+-..+..+++....|...|.+.+++||+.++.
T Consensus        84 gtl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~  124 (312)
T 3abh_A           84 GTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQK  124 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36888998999999999999999999999999999998865

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=94.01  E-value=0.085  Score=40.18  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=36.0

Q ss_pred             cCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          321 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       321 sf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      .+..|+.+.|+.. ..+|+....+|..||+...|+....+.|..
T Consensus        26 ~l~~G~~v~v~~~-~~~W~kV~~~g~~GwV~~~yl~~~~~~~~~   68 (74)
T 2krs_A           26 TLRNNDKVEIIKE-VDGWYEIRFNGKVGYASKSYITIVNEGSLE   68 (74)
T ss_dssp             EEETTCEEEEEEE-ETTEEEEEETTEEEEECSSSEEESSSSCCC
T ss_pred             EECCCCEEEEEEE-eCCEEEEEECCeEEEEEhHHcCCCCCccch
Confidence            5678999999876 468999999999999999999987766643

>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}

Probab=93.89  E-value=4.7  Score=38.55  Aligned_cols=119  Identities=13%  Similarity=0.127  Sum_probs=75.7

Q ss_pred             HHHHHHHHhhhhchhhhhHHHHH--------------HHHHHhhcCcc-------h-hhhhhhHhHHHhhhh-ccCCCCC
Q 017467           67 HQQLEKLYRSTRGTKDFQRDLVK--------------VAEVFTAIGYK-------H-IEAGTKLSEDCCRYG-AENNQNI  123 (371)
Q Consensus        67 ~~~~~~~~~~~~~~~~~q~~~vr--------------~~~~~~~~~~~-------q-~E~~~~l~e~~~kYg-~e~~~~~  123 (371)
                      .|-.+-|-.-.+.||.+-+|+..              +..-++.-..|       + +|.+-.=+|++.+|+ .++|   
T Consensus        42 ~qa~~iL~~Rl~~~k~i~keL~~f~kERa~IEe~YakqLrkLakk~~~l~k~~~~~~~~~~vlt~ee~~~~~~~e~G---  118 (287)
T 3g9g_A           42 YEATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLG---  118 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTSSCHHHHHHCCCCCST---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccchhhccccccccc---
Confidence            44455555556666666666444              44444443332       1 222212256777777 5554   


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh-hhhhhhhhhHHhhhhHHHHHHHHHHHHH
Q 017467          124 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL-EDARHLAQRYSRMRQEAETQAVEVSKRQ  198 (371)
Q Consensus       124 ~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~-e~~R~L~~dy~r~Rq~~e~~~~ev~rRq  198 (371)
                         .|..+...+-.+...++.....|...|..+++.||+.+..++.. -+.|++-+       .++..+.++++-+
T Consensus       119 ---~l~~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~e~~~~~~e~~~l~~-------~L~~~ak~le~~~  184 (287)
T 3g9g_A          119 ---ELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHS-------KLSKNAASIEHYS  184 (287)
T ss_dssp             ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSSSSCHHHHHHHHHHH-------HHHHHHHHHHHCS
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence               58888888888999999999999999999999999999976532 23454444       3444455554443

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=93.00  E-value=0.13  Score=39.44  Aligned_cols=41  Identities=17%  Similarity=0.189  Sum_probs=34.7

Q ss_pred             cCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          321 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       321 sf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      .+..|+.+.|+.. ..+|+....+|..||+...|+....+.+
T Consensus        28 ~l~~G~~v~vl~~-~~~W~kV~~~g~~GwV~~~yl~~~~~~~   68 (76)
T 2kt8_A           28 SLSGNTKVTIVGE-EGAFYKIEYKGSHGYVAKEYIKDIKDEV   68 (76)
T ss_dssp             EECTTCEEEEEEE-ETTEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             EECCCCEEEEEEE-eCCEEEEEECCEEEEEEhHHhCcCCCcc
Confidence            5678999999876 4689999999999999999999876544

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=92.43  E-value=7.4  Score=36.80  Aligned_cols=41  Identities=12%  Similarity=0.131  Sum_probs=37.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +.|..|.-.+-..+..++.....|...|.+++++||+.++.
T Consensus        75 gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~  115 (337)
T 2x3v_A           75 GSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQK  115 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45888888888999999999999999999999999999865

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=92.24  E-value=6.9  Score=36.00  Aligned_cols=42  Identities=14%  Similarity=0.051  Sum_probs=37.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG  167 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~  167 (371)
                      +++..|...+-+.+..++.....+...+.+++++||..+...
T Consensus        72 ~t~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~  113 (305)
T 2efl_A           72 YTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQE  113 (305)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788888888889999999999999999999999998763

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=91.62  E-value=8.3  Score=35.63  Aligned_cols=41  Identities=7%  Similarity=-0.017  Sum_probs=37.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +.|..|...+-..+..++.....+..+|..++++||+.++.
T Consensus        63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~  103 (290)
T 3i2w_A           63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQK  103 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35888888888889999999999999999999999999885

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=91.05  E-value=0.099  Score=39.31  Aligned_cols=39  Identities=28%  Similarity=0.465  Sum_probs=32.3

Q ss_pred             cCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467          321 SLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       321 sf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      .+..|+.+.|+.. ..+|+....+|..||++..|+...+-
T Consensus        27 ~l~~G~~v~v~~~-~~~W~~V~~~G~~GwV~~~~l~~~~~   65 (70)
T 2kq8_A           27 ALPQGQKVQVISE-NSGWSKINYNGQTGYIGTRYLSKLEH   65 (70)
T ss_dssp             CCCSSSSCCCCEE-ETTEEEEEETTEEEEEETTSCSCCCS
T ss_pred             EECCCCEEEEEEe-cCCEEEEEECCEEEEEEhHHccchhh
Confidence            4678888888765 46899999999999999999986653

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=89.95  E-value=16  Score=36.00  Aligned_cols=43  Identities=14%  Similarity=0.119  Sum_probs=38.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          124 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       124 ~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      .++.+..|...+-....+++..+..+..++..++++||..++.
T Consensus        66 ~~~tl~~aW~~ll~ete~~a~~H~~lae~L~~~v~~~l~~~~k  108 (406)
T 4dyl_A           66 PDSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIR  108 (406)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999998876

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=88.91  E-value=16  Score=34.66  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=37.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI  165 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~  165 (371)
                      +.|..|...+-..+..++.....+..+|..++++||+.++
T Consensus        75 gsl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~  114 (320)
T 3m3w_A           75 GTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQ  114 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3688899999999999999999999999999999999886

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=88.13  E-value=15  Score=33.32  Aligned_cols=39  Identities=8%  Similarity=0.180  Sum_probs=32.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      +|..+.-.+-+....++.....+...+ .++++||..+..
T Consensus        70 s~~~~w~~~~~~~e~~a~~h~~~a~~l-~~~~~~l~~~~~  108 (276)
T 2v0o_A           70 TFAPVWDVFKTSTEKLANCHLDLVRKL-QELIKEVQKYGE  108 (276)
T ss_dssp             SSGGGHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            466677777777788999999999999 599999999876

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=87.88  E-value=16  Score=33.50  Aligned_cols=42  Identities=12%  Similarity=-0.073  Sum_probs=37.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 017467          126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG  167 (371)
Q Consensus       126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~  167 (371)
                      ++|..|...+-.....++.....|...|..++++||..+...
T Consensus        65 ~t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~  106 (301)
T 2efk_A           65 FSQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQE  106 (301)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378888888888899999999999999999999999998763

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=85.49  E-value=0.43  Score=34.45  Aligned_cols=18  Identities=28%  Similarity=0.455  Sum_probs=14.7

Q ss_pred             CeeeEecCCceeeccCCC
Q 017467          345 GKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       345 Gk~G~FPsnYVE~i~~lP  362 (371)
                      |+.||||.+||+.+.+.+
T Consensus         2 g~~G~~P~~yv~~~~~~~   19 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSGT   19 (62)
T ss_dssp             CEEEEEEGGGEEECCCCS
T ss_pred             CCccccccceEeecCCCC
Confidence            689999999999765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-14
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-13
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	3e-13
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	4e-13
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	1e-12
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-12
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	2e-12
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-12
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	3e-12
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	4e-12
d1i4da_	200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	5e-12
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-11
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	2e-11
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	2e-11
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-11
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	4e-11
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	8e-11
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	1e-10
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	2e-10
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-10
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	2e-10
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	4e-10
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	5e-10
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	6e-10
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	6e-10
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	8e-10
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	1e-09
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	1e-09
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	1e-09
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-09
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	2e-09
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-09
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	3e-09
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	8e-09
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	8e-09
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	2e-08
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	3e-08
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	7e-08
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	2e-07
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	4e-07
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	4e-07
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	7e-07
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	1e-05
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	7e-04
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	8e-04
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	0.002
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	0.003
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	0.004

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 296 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355
           + S  +   + +A   F   +E ELS+  GD + V +V   GW EG   G+ GWFPS  V
Sbjct: 3   SGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

Query: 356 EKRQRIPVS 364
            + +    S
Sbjct: 63  REIKSSERS 71

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (154), Expect = 1e-13
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            +A+  F    + EL    GD++ V   S   W +G C G+ G FP   V  
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 55

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 61.6 bits (150), Expect = 3e-13
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
            +A+  F      EL+   GD + +       W EG+   + G FPS  V 
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (149), Expect = 4e-13
 Identities = 18/52 (34%), Positives = 22/52 (42%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A A++ F A  E EL    G+ V V   S   W  G    K G FP+  V  
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (146), Expect = 1e-12
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
            EA+  + A   ++L    GD ++V       W EGE KGK G FP   VE 
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 1e-12
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 364
           A++P+++    +L+   G+ ++V +     W  G    ++G FPS  V+ +   P S
Sbjct: 13  ALYPYSSVEPGDLTFTEGEEILVTQKDG-EWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.3 bits (144), Expect = 2e-12
 Identities = 12/50 (24%), Positives = 27/50 (54%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           A++ +   S +E+++  GD + +   +   W + E   + G+ P+A V+K
Sbjct: 5   ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 54

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 3e-12
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 287 SAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK 346
           S+    P+ +   + +     A++ + A +E ELS   G  + V       W +GE  G 
Sbjct: 23  SSERATPAFHPVCQVI-----AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV 77

Query: 347 AGWFPSANVEK 357
            G FPS  V+ 
Sbjct: 78  TGLFPSNYVKM 88

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (143), Expect = 3e-12
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
             A++ F A  + EL+   G+ + V   S + W +GE     G FPS  V 
Sbjct: 5   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 4e-12
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 296 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVV-RKVSPSGWSEGECKGKAGWFPSAN 354
           + S    +  A+A++   A  + ELS   G            GW EG   GK G  P   
Sbjct: 3   SGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENY 62

Query: 355 VE 356
           VE
Sbjct: 63  VE 64

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 5e-12
 Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 11/203 (5%)

Query: 69  QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL 128
           +LE      R TK     ++++    TA  Y  ++    L +       ++ +      L
Sbjct: 7   ELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPE------L 60

Query: 129 PKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAE 188
            +      + +K + K  E     ++  V      +     +ED     ++Y   R E +
Sbjct: 61  QEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTK--TMEDTLMTVKQYEAARLEYD 118

Query: 189 TQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRL 248
               ++ +     R+A       +L +A+A  Q  +     L  + A  L  +E  + ++
Sbjct: 119 AYRTDLEELSLGPRDAGTRG---RLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKV 175

Query: 249 TFQRLVAMVEGEKNYHLRIAAIL 271
             ++L+        Y       L
Sbjct: 176 MHKQLLLFHNAVSAYFAGNQKQL 198

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A+A+  +TA  +  L+    D + V +     W  GE  G  GWFP + V+
Sbjct: 13  AQALCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEVHGGRGWFPKSYVK 62

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEKR 358
           A A + F A ++ ELS   GD + V+ +     W + E  GK G+ P   +E +
Sbjct: 3   AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 357
             A+  F    E++L    GD + +R      W   E  +GK G  P   VEK
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP----SGWSEGECKGKAGW 349
           SE    +  +    A++ F A +  ELS+     + + +       + W   E  GK G+
Sbjct: 8   SEAEGNQVYF----AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGY 63

Query: 350 FPSANVEKRQRIPVS 364
            PS  + K +  P S
Sbjct: 64  VPSNYIRKTESGPSS 78

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-GWFPSANVEK 357
            +A+  + A  E EL+      +   +    GW  G+  GK   WFPS  VE+
Sbjct: 9   VKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (132), Expect = 8e-11
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 308 AIHPFTAASEKELSLGVGDYVVV-RKVSPSGWSEGECKGKAGWFPSANVE 356
           A++ F A+ +  LS+  G+ + V        W E + K   GW PS  + 
Sbjct: 5   ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYIT 54

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVE 356
           A A + + AA + EL+    D ++  +     W  GE +  G  G FPS  V 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGECKGKAGWFPSANVE 356
           A+  +   ++ EL +  GD + +          W       K G+ P   + 
Sbjct: 9   ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 60

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360
           AI  +TA    E+SL  G+ V V      GW         G+FPS  ++K  +
Sbjct: 19  AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ 71

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVE 356
           A A++ F      +L    GD + + K   S + W  G   G+ G FP+  VE
Sbjct: 4   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVV-VRKVSPSGWSEGECK-GKAGWFPSANVEKRQRIP 362
             A + F   +E++L    GD +  V       W + + K G+ G  P+  V+KR+ + 
Sbjct: 9   CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK 67

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 5e-10
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS-EGECKGKAGWFPSANVEK 357
           L  A+H +  + + +L    G+ + + + S   W  +    G+ G+ P   V K
Sbjct: 8   LVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQ 359
           A++ + + +E +LS   G+ + +   +   W        G+ G+ PS  V    
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQ 359
           A++ F A    +L L  G   ++ + +   W     K G  G+ PS  V  ++
Sbjct: 7   AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 8e-10
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKRQ 359
           A++ +   +  +L L  GD   + + S   W     K G+ G+ PS  V + +
Sbjct: 13  ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 357
           A++ + A +E +LS   G+   +   S   W E      G+ G+ PS  V  
Sbjct: 5   ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVEK 357
           A++ + AA   E+S   GD ++  +    GW  G  +  G+ G  P+  VE 
Sbjct: 8   AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWS-EGECKGKAGWFPSANVEKRQRIP 362
           A++ + A   ++LS   GD +VV + S   W        K G+ PS  V +   + 
Sbjct: 9   ALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLE 64

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 308 AIHPFTAASEKELSLGVGDYV--VVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 364
           A++PF A +  E+S   GD +    + V   GW  G  +G  GWFP   VEK       
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE 68

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 302 VYFLAEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGE-CKGKAGWFPSANVEKR 358
           V  + + ++PF++ +E+EL+   G+ + V  +  +   W + +  +G+ G  P   V   
Sbjct: 5   VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 64

Query: 359 QRIPVSN 365
              P  +
Sbjct: 65  SDGPALH 71

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-----KGKAGWFPSANVEK 357
           +A+    + A+  ++LSL  G  +++ K + SGW +GE      K + GWFP+++V+ 
Sbjct: 9   IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 308 AIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVE 356
            I P   A    L L  GD V + +  +   W EG      + GWFP   V 
Sbjct: 15  GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 8e-09
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357
           AI  +   S  E++L  GD V V + S SGW   + K K GW P++ +E 
Sbjct: 7   AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 56

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 8e-09
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           AI  +TA    E+SL  G+ V V      GW         G+FPS  ++
Sbjct: 5   AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356
           A++ + F A +  ELS+   D + +       W      G +G+ P+  ++
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILD 54

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 15/71 (21%)

Query: 302 VYFLAEAIHPFTAASEKELSLGVGDYVVV-----RKVSPSGWSEG----------ECKGK 346
             F  +A H +TA    EL L  GD V+V      +    GW  G          E +  
Sbjct: 11  FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKC 70

Query: 347 AGWFPSANVEK 357
            G FP    E+
Sbjct: 71  RGVFPENFTER 81

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 46.4 bits (110), Expect = 7e-08
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK 357
           A++ +     +EL+L   +   +   S   W   +   G  G+ PS+ + +
Sbjct: 3   ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 53

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 306 AEAIHPFTAAS-EKELSLGVGDYV-VVRKVSPSG-----WSEGECKGKAGWFPSANVE 356
           A A++ F   + E E++L  GD + ++ K  P G     W      G  G+ P   +E
Sbjct: 8   ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 65

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 306 AEAIHPFTAA-SEKELSLGVGDYV-VVRKVSPSGWSEGECK--GKAGWFPSANVEK 357
            + I P TA  ++  LS   GD + ++      GW  GE       GWFPS+  + 
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 306 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSG--WSEGECKGKAGWFPSANVE 356
            + ++ +    + E+++  GD + +V + + SG      +  G+ G  P+  + 
Sbjct: 2   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 7e-07
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 17/78 (21%)

Query: 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS---------------GWSEG--ECKGK 346
           +   A++ +    E+++ L +GD + V K S                 GW  G  E  G+
Sbjct: 4   YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 63

Query: 347 AGWFPSANVEKRQRIPVS 364
            G FP   VE   R  +S
Sbjct: 64  RGDFPGTYVEYIGRKKIS 81

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 11/70 (15%)

Query: 294 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGW------SEGECKGKA 347
           S +S           I  + A  E E+ +  G+ V V  V+          +        
Sbjct: 3   SGSSGSTMT-----VIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAE 57

Query: 348 GWFPSANVEK 357
           GW P + +  
Sbjct: 58  GWVPGSILAP 67

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 7e-04
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 287 SAPPVIPSENSSQKAVYFLA----EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEG 341
           S       +  S K    +A              E EL L  G Y+ V   +   G+ EG
Sbjct: 3   SGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEG 62

Query: 342 E-CKGKAGWFPSANVEK 357
           E   G+ G  PS  V+ 
Sbjct: 63  ELLDGQRGLVPSNFVDF 79

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 284 RKESAPPVIPS-ENSSQKAVYFLAEAIHPFTAASEKE-------LSLGVGDYVVVRKVSP 335
           R+E+        E +  K V F       ++AA E +       +S    D++ V++   
Sbjct: 1   RREAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFN 60

Query: 336 SGWSEGEC---KGKAGWFPSANVEKRQRI 361
           + W  G       + G+ PS    +  R+
Sbjct: 61  NDWWIGRLVKEGCEIGFIPSPVKLENMRL 89

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVR-----------KVSPSGWSEGECKGKAGWFPSA 353
           +A A+  + A   + L++  G  V V              S  G   G+   + G+FPS+
Sbjct: 23  MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 82

Query: 354 NVE 356
            V 
Sbjct: 83  IVR 85

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVS----PSGWSEGECKGKAGWFPSANVEKRQR 360
           L +A   F AA + ++SL  GD V V K             +     G+  S+ ++    
Sbjct: 19  LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNP 78

Query: 361 IP 362
             
Sbjct: 79  RR 80

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 11/67 (16%)

Query: 304 FLAEAIHPFTAASE-----KELSLGVGDYVVVRKVSPSGW------SEGECKGKAGWFPS 352
           F   A+  +    +     + LS   GD + V       W               G+ PS
Sbjct: 2   FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPS 61

Query: 353 ANVEKRQ 359
               +R+
Sbjct: 62  KRRVERR 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d2d4ca1	237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.58
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.58
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.57
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.56
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.55
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.54
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.52
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.52
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.52
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.52
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.52
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.51
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.49
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.48
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.48
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.47
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.46
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.46
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.45
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	99.45
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.45
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.45
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.45
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.43
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.42
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.42
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.42
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.42
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.41
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.41
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.41
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.4
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.39
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.39
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.39
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.38
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.38
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.36
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.35
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.33
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.31
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.29
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.29
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.28
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	99.26
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.26
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.09
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	99.04
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.92
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.77
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	92.89
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	92.27
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	91.94
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	80.85

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.2e-15  Score=135.26  Aligned_cols=208  Identities=17%  Similarity=0.271  Sum_probs=158.8

Q ss_pred             HHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhhch-hhhhHHHHHHHHHHh--------------------hcCc
Q 017467           41 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGT-KDFQRDLVKVAEVFT--------------------AIGY   99 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~vr~~~~~~--------------------~~~~   99 (371)
                      -|.-.||.+     +..=+|+.    ..+||+-+..+|.+ ++++|++.-.+.+-+                    ..++
T Consensus         6 ~~~ek~G~~-----e~T~ld~~----f~~lEk~~~~~~~~~~kl~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (237)
T d2d4ca1           6 KVSEKVGGA-----EGTKLDDD----FKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGY   76 (237)
T ss_dssp             HHHHHHTSH-----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGCSCC-----------------C
T ss_pred             HHHhHcCCC-----CcCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhhcccccccch
Confidence            677888732     22223543    67788888888876 788888765544321                    2246


Q ss_pred             chhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhh
Q 017467          100 KHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQR  179 (371)
Q Consensus       100 ~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~d  179 (371)
                      |+.+.  .||++|..+|.+++   .++.+|.++..||+++..|+..+..++..+.+.|++||+.++..|+.+.    ...
T Consensus        77 ~~~~~--~l~~~~~~~~~~~~---~d~~~~~~L~~~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~d~~~~----~~~  147 (237)
T d2d4ca1          77 PQAEA--LLAEAMLKFGRELG---DDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREI----QSA  147 (237)
T ss_dssp             CCHHH--HHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHH----HHH
T ss_pred             hhhhH--HHHHHHHHhcccCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence            67776  79999999999999   7899999999999999999999999999999999999999999877654    224


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhHhhHhhHHHHHH
Q 017467          180 YSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ-QHRLTFQRLVAMVE  258 (371)
Q Consensus       180 y~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~q-qqrlt~~~L~~~ve  258 (371)
                      +++.|..++....++++.+.+..+  .++  ++++.|+.+|+.++..       +...|..+..- ..-  +..|..|++
T Consensus       148 ~~~~rk~~d~~~~~~~~~~~k~~~--~~~--e~l~~a~~~~e~~~~~-------~~~~l~~l~~~~~~~--~~~l~~~~~  214 (237)
T d2d4ca1         148 LQHHLKKLEGRRLDFDYKKKRQGK--IPD--EELRQALEKFDESKEI-------AESSMFNLLEMDIEQ--VSQLSALVQ  214 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSS--CCH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh--hhH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHccHHH--HHHHHHHHH
Confidence            455555666666666655555432  233  6899999999998887       88888887652 222  578999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHh
Q 017467          259 GEKNYHLRIAAILGDVEAEMV  279 (371)
Q Consensus       259 ae~~yhq~~~~IL~~L~~~l~  279 (371)
                      +++.||+.+.++|++|...+.
T Consensus       215 aq~~y~~~~~~~l~~l~~~l~  235 (237)
T d2d4ca1         215 AQLEYHKQAVQILQQVTVRLE  235 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998775

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.1e-15  Score=112.13  Aligned_cols=54  Identities=33%  Similarity=0.480  Sum_probs=52.1

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      .|+|+|||.+++++||+|.+||.|.|++..++|||.|+.+|+.||||++||+++
T Consensus         3 yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            689999999999999999999999999999999999999999999999999976

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-15  Score=122.53  Aligned_cols=59  Identities=29%  Similarity=0.445  Sum_probs=55.2

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|||||+++.++||+|++||+|.|++..++|||+|+++|+.||||+|||+.+.+.
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~   92 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCC
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCCC
Confidence            45799999999999999999999999999999999999999999999999999988764

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2e-15  Score=110.40  Aligned_cols=54  Identities=30%  Similarity=0.620  Sum_probs=51.6

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      .|+|+|||.+..++||+|.+||+|.|+...++|||.|+.+|+.||||++||+++
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            589999999999999999999999999998999999999999999999999874

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=2.7e-15  Score=109.32  Aligned_cols=54  Identities=24%  Similarity=0.455  Sum_probs=51.4

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      .++|+|||.++.++||+|++||.|.|++..++|||.|+++|+.||||+|||+.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            378999999999999999999999999999999999999999999999999864

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.55  E-value=3.3e-15  Score=109.99  Aligned_cols=55  Identities=25%  Similarity=0.451  Sum_probs=52.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..|+|+|+|.++.++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            4689999999999999999999999999999999999999999999999999864

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.1e-15  Score=111.50  Aligned_cols=55  Identities=35%  Similarity=0.578  Sum_probs=52.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|+|.++.++||+|.+||+|.|++..++|||.|+++|+.||||++||++.
T Consensus         6 ~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            4689999999999999999999999999999999999999999999999999865

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=4.5e-15  Score=109.28  Aligned_cols=54  Identities=30%  Similarity=0.467  Sum_probs=51.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceee
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK  357 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~  357 (371)
                      ..|+|+|+|.++.++||+|++||+|.|++..++|||.|+.+|+.||||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            468999999999999999999999999999999999999999999999999973

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.3e-15  Score=106.01  Aligned_cols=51  Identities=31%  Similarity=0.395  Sum_probs=49.3

Q ss_pred             EEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcee
Q 017467          306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE  356 (371)
Q Consensus       306 arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE  356 (371)
                      ++|+|+|.++.++||+|.+||+|.|+++.++|||.|+++|+.||||++||+
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            579999999999999999999999999999999999999999999999986

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.6e-15  Score=109.63  Aligned_cols=55  Identities=35%  Similarity=0.511  Sum_probs=52.3

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+++++||+|++||+|.|++..++|||.|+++|+.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            4689999999999999999999999999999999999999999999999999875

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.5e-15  Score=115.39  Aligned_cols=59  Identities=36%  Similarity=0.682  Sum_probs=55.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...++|+|||.+..++||+|.+||+|.|++..+++||.|+++|+.||||.+||+.+...
T Consensus        10 ~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~~   68 (76)
T d1ujya_          10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCHH
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCCC
Confidence            45789999999999999999999999999998999999999999999999999988654

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=7.9e-15  Score=107.67  Aligned_cols=55  Identities=29%  Similarity=0.389  Sum_probs=51.5

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      |.|+|+|+|.+..++||+|++||+|.|++..++|||.|.+  +|+.||||+|||+.+
T Consensus         1 P~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            4699999999999999999999999999999999999996  689999999999875

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1e-14  Score=107.32  Aligned_cols=55  Identities=29%  Similarity=0.483  Sum_probs=50.5

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCC--CCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d--~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      |.|+|+|+|.+++++||+|++||+|.|+...+  .|||.|.++|+.||||++||+.+
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            46999999999999999999999999998763  58999999999999999999864

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=111.76  Aligned_cols=58  Identities=28%  Similarity=0.499  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...++|+|||.+..++||+|.+||+|.|++. +++||.|+++|+.||||.+||+.+...
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCCC
Confidence            4579999999999999999999999999987 579999999999999999999988654

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.8e-14  Score=109.34  Aligned_cols=62  Identities=27%  Similarity=0.543  Sum_probs=54.9

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC-----CeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-----GKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~-----Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...|+|+|+|.+..++||+|.+||+|.|++..++|||.|++.     |+.||||.+||+.+.+.+..
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~~~   73 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSER   73 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCCSS
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCCCCC
Confidence            457999999999999999999999999999999999999864     45899999999988765443

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.7e-14  Score=117.30  Aligned_cols=56  Identities=30%  Similarity=0.335  Sum_probs=53.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ  359 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~  359 (371)
                      ..++|+|||.+..++||+|.+||+|.|++..++|||.|+++|+.||||++||+.+.
T Consensus        15 ~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~   70 (118)
T d1ng2a2          15 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSG   70 (118)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETT
T ss_pred             cEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECC
Confidence            46799999999999999999999999999999999999999999999999999764

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.5e-14  Score=110.51  Aligned_cols=61  Identities=26%  Similarity=0.404  Sum_probs=55.5

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeC----CCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS----PSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~----d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ..++|||+|.+..++||+|.+||+|.|++..    +.|||.|+++|+.||||++||+.+.+.|.+
T Consensus        14 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~pss   78 (79)
T d1uhca_          14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS   78 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSCCC
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCCCCC
Confidence            4689999999999999999999999999764    468999999999999999999999887765

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.9e-14  Score=109.52  Aligned_cols=61  Identities=23%  Similarity=0.400  Sum_probs=55.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ...++|+|+|.+..++||+|++||+|.|++. +++||.|+++|+.||||.+||+.+...|.+
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~~pss   68 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS   68 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCCCC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCCCCCC
Confidence            4568999999999999999999999999976 568999999999999999999998776654

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-14  Score=104.92  Aligned_cols=53  Identities=32%  Similarity=0.486  Sum_probs=45.2

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEe-CCCCeeEEEeCCeeeEecCCceee
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKV-SPSGWSEGECKGKAGWFPSANVEK  357 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~-~d~GWweGe~~Gk~G~FPsnYVE~  357 (371)
                      .|+|+|||.+++++||+|++||.|.|+.. .+++||.|.++|+.||||+|||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            58999999999999999999999998765 467899999999999999999974

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.8e-14  Score=103.82  Aligned_cols=53  Identities=30%  Similarity=0.540  Sum_probs=50.0

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceee
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEK  357 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~  357 (371)
                      .++|+|||.++++++|+|++||+|.|++..+++||.|+. +|+.||||++||++
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            589999999999999999999999999999999999985 78999999999985

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-14  Score=105.77  Aligned_cols=55  Identities=27%  Similarity=0.473  Sum_probs=51.0

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+++++||+|.+||+|.|+...++|||.|.+  +|+.||||+|||+.+
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            3589999999999999999999999999999999999996  689999999999864

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-12  Score=116.15  Aligned_cols=194  Identities=10%  Similarity=0.123  Sum_probs=124.0

Q ss_pred             hchhhhhH---HHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017467           78 RGTKDFQR---DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLS  154 (371)
Q Consensus        78 ~~~~~~q~---~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~  154 (371)
                      .+.|.+.+   .|.+++.++..+     ..  .++|+|.++|...+.......+|.||..+|++++.|++.++.|...+.
T Consensus        26 p~~k~li~~~k~y~~a~~~~~~a-----~~--~f~dal~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i~~~~~~l~~~~~   98 (248)
T d1y2oa1          26 PSLRNFIAMGKNYEKALAGVTYA-----AK--GYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFH   98 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444443   366666665444     33  689999998854221223456999999999999999999999999999


Q ss_pred             hhhhhHHHHhhhcChhhh---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCc-ccHHHHHHHHHHHHHHHHHHHHh
Q 017467          155 SQVLDPLRAMITGAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNP-ENVAKLHAAEARMQELKANMAIL  230 (371)
Q Consensus       155 ~~~~~PL~~~~~~~~~e~---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~-d~~~kl~~Ae~Kl~elk~~m~~l  230 (371)
                      ++|++||+.++.+|++++   -++++..+++.+..++.-..++.+-+.|.+...++ ....+...+++-+...+..+..+
T Consensus        99 ~~~i~PL~~~~~~d~k~i~~~kK~~~k~~k~~~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  178 (248)
T d1y2oa1          99 NELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENY  178 (248)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998864   33444445555555555555554333332222211 11234444555555555443333


Q ss_pred             hHHHHHHHHHHHHHhhHhh--HhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467          231 GKEAAAALAAIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  280 (371)
Q Consensus       231 gkea~~am~~ve~qqqrlt--~~~L~~~veae~~yhq~~~~IL~~L~~~l~s  280 (371)
                      -.++..-. -++ ...|..  ++.|+++++++.+||.++.++++++...+..
T Consensus       179 l~~~~~~~-~~e-erkr~~~lv~~l~~~~~a~~~~~~q~~~~l~~~~~~~~~  228 (248)
T d1y2oa1         179 VSDGYKTA-LTE-ERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQ  228 (248)
T ss_dssp             HHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            22221110 011 223444  5889999999999999999999998888764

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.7e-14  Score=106.68  Aligned_cols=61  Identities=21%  Similarity=0.432  Sum_probs=54.1

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCC--CCeeEEE-eCCeeeEecCCceeeccCCCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGE-CKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d--~GWweGe-~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ...++|+|||.++.++||+|.+||+|.|+...+  +|||.++ .+|+.||||.+||+.+...|.
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~p~   69 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   69 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCC
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCCCC
Confidence            457999999999999999999999999998653  4899998 589999999999999987664

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.45  E-value=3.4e-14  Score=102.61  Aligned_cols=52  Identities=19%  Similarity=0.307  Sum_probs=48.6

Q ss_pred             EEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceee
Q 017467          306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEK  357 (371)
Q Consensus       306 arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~  357 (371)
                      +.|+|||.+..++||+|++||+|.|++..+++||.++ .+|+.||||+|||++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            4799999999999999999999999999999999998 578999999999974

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=6.7e-14  Score=105.53  Aligned_cols=60  Identities=20%  Similarity=0.357  Sum_probs=54.0

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccCCCCC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      .++|+|||.+.+++||+|++||+|.|+...+.+||.+. .+|+.||||++||+.+.+....
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~~~~   64 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNNLD   64 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTTTTS
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCCCcc
Confidence            47999999999999999999999999999999999997 4789999999999987665443

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=5.1e-14  Score=106.31  Aligned_cols=56  Identities=23%  Similarity=0.405  Sum_probs=49.2

Q ss_pred             ceEEEEecCCCCCCCC-CccCCCCCEEEEEEeCC-----CCeeEEEe-CCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTAASEK-ELSLGVGDYVVVRKVSP-----SGWSEGEC-KGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea~~~~-ELsf~~GDiI~Vl~~~d-----~GWweGe~-~Gk~G~FPsnYVE~i  358 (371)
                      ...|+|+|+|.+.+++ ||+|++||+|.|+++.+     .|||.|+. +|+.||||+|||+.+
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            4579999999998764 99999999999998764     48999985 899999999999864

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.6e-14  Score=104.55  Aligned_cols=55  Identities=16%  Similarity=0.271  Sum_probs=49.6

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCC---CCeeEEEeCCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP---SGWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d---~GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      ..++|+|||.+++++||+|++||+|.|++..+   .|||.|+.+|+.||||++||+.+
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            46899999999999999999999999987653   47999999999999999999754

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.2e-14  Score=107.66  Aligned_cols=58  Identities=31%  Similarity=0.425  Sum_probs=51.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCC-CCeeEEEeCCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSP-SGWSEGECKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d-~GWweGe~~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|||+|.+..++||+|.+||+|.|++..+ ++||.|+++|+.||||.+||+.+..
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCC
Confidence            346999999999999999999999999887654 5799999999999999999998754

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.1e-13  Score=101.28  Aligned_cols=54  Identities=28%  Similarity=0.494  Sum_probs=48.7

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCC-CeeEEEeCCeeeEecCCceeec
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGECKGKAGWFPSANVEKR  358 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~-GWweGe~~Gk~G~FPsnYVE~i  358 (371)
                      .+.|+|||.+..++||+|++||+|.|+...++ +||.++.+|+.||||++||+.+
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            47899999999999999999999999987665 5788999999999999999875

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-13  Score=109.29  Aligned_cols=58  Identities=34%  Similarity=0.615  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeeccCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i~~l  361 (371)
                      ..++|||||.+++++||+|++||+|.|+.+.  +.+||.+.++|+.||||++||+.+...
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCC
Confidence            4689999999999999999999999999765  467999999999999999999987553

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.9e-14  Score=106.87  Aligned_cols=58  Identities=21%  Similarity=0.332  Sum_probs=52.8

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|+|.+.+++||+|++||+|.|+...+.+||.+.. +|+.||||++||+.+.+
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            45789999999999999999999999999998999999984 78999999999987653

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=9.9e-14  Score=106.07  Aligned_cols=58  Identities=29%  Similarity=0.465  Sum_probs=49.4

Q ss_pred             ceEEEEecCCCCC-CCCCccCCCCCEEEEEEe-CCCCeeEEEe--CCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAA-SEKELSLGVGDYVVVRKV-SPSGWSEGEC--KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~-~~~ELsf~~GDiI~Vl~~-~d~GWweGe~--~Gk~G~FPsnYVE~i~~  360 (371)
                      ...|+|+|||.+. +++||+|++||+|.|+.. .++|||.|++  +|+.||||+|||+.+..
T Consensus         7 ~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            3468999999985 578999999999999865 4568999997  48899999999998854

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-13  Score=99.93  Aligned_cols=54  Identities=28%  Similarity=0.466  Sum_probs=49.8

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      .++|+|||.+.+++||+|++||+|.|+...+++||.+..  +|+.||||+|||+.+
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            367999999999999999999999999999999999985  789999999999864

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3e-14  Score=108.75  Aligned_cols=59  Identities=27%  Similarity=0.436  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCe-eeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK-AGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk-~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|+|.+.+++||+|.+||+|.|++..++|||.|++++. .||||++||+.+.+.
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            34689999999999999999999999999999999999997554 469999999987553

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=103.08  Aligned_cols=57  Identities=21%  Similarity=0.408  Sum_probs=51.9

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      .++|+|||.+..++||+|++||.|.|++..+++||.|+.  +|+.||||++||+.+..+
T Consensus         4 ~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s~   62 (64)
T d1fmka1           4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSI   62 (64)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             EEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECccC
Confidence            578999999999999999999999999988999999986  689999999999987543

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.6e-13  Score=103.29  Aligned_cols=59  Identities=24%  Similarity=0.418  Sum_probs=51.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEe-CCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGEC-KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~-~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...|+|+|||.+.+++||+|++||+|.|+... +.+||.+.. +|+.||||.+||+.+...
T Consensus         6 g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~~   66 (71)
T d1k9aa1           6 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV   66 (71)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCC
T ss_pred             CCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEcccC
Confidence            35699999999999999999999999998875 557888886 589999999999987653

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.9e-13  Score=103.76  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe------CCeeeEecCCceeeccC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC------KGKAGWFPSANVEKRQR  360 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~------~Gk~G~FPsnYVE~i~~  360 (371)
                      ...++|+|||.+..++||+|.+||+|.|++..++|||.++.      +|+.||||++||+.+..
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            35689999999999999999999999999999999999985      47899999999997754

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6e-14  Score=110.43  Aligned_cols=59  Identities=31%  Similarity=0.478  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeC---------------CCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS---------------PSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~---------------d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...++|+|+|.+..++||+|++||+|.|+...               ++|||.|..  +|+.||||+|||+.+.+.
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~   78 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK   78 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCc
Confidence            45789999999999999999999999998642               468999985  799999999999988653

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.1e-13  Score=107.94  Aligned_cols=59  Identities=24%  Similarity=0.112  Sum_probs=53.2

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCC----CCeeEEEeCCeeeEecCCceeeccCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP----SGWSEGECKGKAGWFPSANVEKRQRIP  362 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d----~GWweGe~~Gk~G~FPsnYVE~i~~lP  362 (371)
                      ..|+|+|+|.+..++||+|.+||+|.|+++.+    .+||.++.+|+.||||+|||+.+.+..
T Consensus        18 ~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~~   80 (92)
T d1ug1a_          18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCS
T ss_pred             eEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCcc
Confidence            45899999999999999999999999998764    689999999999999999999886543

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.5e-13  Score=101.14  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=49.4

Q ss_pred             EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccC
Q 017467          305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQR  360 (371)
Q Consensus       305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~  360 (371)
                      .|+|+|||.+++++||+|.+||+|.|++.. ++||.+. .+|+.||||+|||+.+.+
T Consensus         3 ~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           3 YAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            589999999999999999999999999864 5899887 589999999999998753

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.5e-13  Score=107.69  Aligned_cols=58  Identities=34%  Similarity=0.507  Sum_probs=50.2

Q ss_pred             cceEEEEecCCCCCCCCCccCCCCCEEEEEEeC-----CCCeeEEEe----------CCeeeEecCCceeecc
Q 017467          302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-----PSGWSEGEC----------KGKAGWFPSANVEKRQ  359 (371)
Q Consensus       302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~-----d~GWweGe~----------~Gk~G~FPsnYVE~i~  359 (371)
                      ....|+|+|+|.+.+++||+|++||+|.|++..     ++|||.|..          +|+.||||+|||+.++
T Consensus        11 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          11 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             CCEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            345799999999999999999999999999754     468999975          3678999999999864

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.7e-13  Score=99.55  Aligned_cols=58  Identities=24%  Similarity=0.441  Sum_probs=50.4

Q ss_pred             ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeeccCC
Q 017467          303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRI  361 (371)
Q Consensus       303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~~l  361 (371)
                      ...++|+|||.++.++||+|.+||+|.|++. +++||.+..  +|+.||||+|||+.+..+
T Consensus         4 ~~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~~   63 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSL   63 (65)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTCG
T ss_pred             cEEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECccC
Confidence            3468899999999999999999999999975 567888874  689999999999987654

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=4e-13  Score=97.58  Aligned_cols=52  Identities=13%  Similarity=0.418  Sum_probs=45.0

Q ss_pred             EEEecCCCCCCCCCccCCCCCEEEEEEeCCCC-eeEEE--eCCeeeEecCCceee
Q 017467          306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGE--CKGKAGWFPSANVEK  357 (371)
Q Consensus       306 arALydfea~~~~ELsf~~GDiI~Vl~~~d~G-WweGe--~~Gk~G~FPsnYVE~  357 (371)
                      ++|||||.+++++||+|++||+|.|++..+.+ ||.+.  .+|+.||||+|||+.
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            68999999999999999999999999876654 56555  379999999999973

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=9.9e-13  Score=105.91  Aligned_cols=62  Identities=31%  Similarity=0.365  Sum_probs=50.9

Q ss_pred             cceEEEEecCCCCCC------CCCccCCCCCEEEEEEeCC-CCeeEEE-eCCeeeEecCCceeeccCCCC
Q 017467          302 VYFLAEAIHPFTAAS------EKELSLGVGDYVVVRKVSP-SGWSEGE-CKGKAGWFPSANVEKRQRIPV  363 (371)
Q Consensus       302 ~~~~arALydfea~~------~~ELsf~~GDiI~Vl~~~d-~GWweGe-~~Gk~G~FPsnYVE~i~~lP~  363 (371)
                      ....|+|+|||++..      ++||+|++||+|.|+...+ ++||.+. ++|+.||||+|||+.+...+.
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~~~   85 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNES   85 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCCC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCccc
Confidence            346799999998753      5799999999999997655 4688887 489999999999998865543

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1.5e-12  Score=98.87  Aligned_cols=56  Identities=29%  Similarity=0.472  Sum_probs=47.3

Q ss_pred             ceEEEEecCCCC------CCCCCccCCCCCEEEEEEe-CCCCeeEEEe--CCeeeEecCCceeec
Q 017467          303 YFLAEAIHPFTA------ASEKELSLGVGDYVVVRKV-SPSGWSEGEC--KGKAGWFPSANVEKR  358 (371)
Q Consensus       303 ~~~arALydfea------~~~~ELsf~~GDiI~Vl~~-~d~GWweGe~--~Gk~G~FPsnYVE~i  358 (371)
                      .+.++++++|.+      ..++||+|++||+|.|++. .++|||.|+.  +|+.||||+|||+..
T Consensus         4 ~Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           4 MPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CCEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            356778887754      6789999999999999875 5679999996  799999999999864

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.9e-13  Score=109.27  Aligned_cols=55  Identities=22%  Similarity=0.427  Sum_probs=48.7

Q ss_pred             eEEEEecCCCCCC-----CCCccCCCCCEEEEEEeCCCCeeEEEe------CCeeeEecCCceeec
Q 017467          304 FLAEAIHPFTAAS-----EKELSLGVGDYVVVRKVSPSGWSEGEC------KGKAGWFPSANVEKR  358 (371)
Q Consensus       304 ~~arALydfea~~-----~~ELsf~~GDiI~Vl~~~d~GWweGe~------~Gk~G~FPsnYVE~i  358 (371)
                      +.++|+|||++..     ..||+|++||+|.|+...+++||.|+.      +|+.||||+|||++.
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            4689999999875     358999999999999999999999984      678999999999764

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.9e-12  Score=95.78  Aligned_cols=53  Identities=23%  Similarity=0.462  Sum_probs=46.6

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceee
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEK  357 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~  357 (371)
                      ..++|+|||.+..++||+|++||+|.|++..+ +||.+.  .+|+.||||++||++
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            46899999999999999999999999998764 577766  478999999999975

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.3e-12  Score=105.46  Aligned_cols=61  Identities=23%  Similarity=0.324  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCCCCCCccCCCCCEEEEEEe---CCCCeeEEEeC--------CeeeEecCCceeeccCCCCC
Q 017467          304 FLAEAIHPFTAASEKELSLGVGDYVVVRKV---SPSGWSEGECK--------GKAGWFPSANVEKRQRIPVS  364 (371)
Q Consensus       304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~---~d~GWweGe~~--------Gk~G~FPsnYVE~i~~lP~s  364 (371)
                      ..++|+|+|.+.+++||+|++||+|.|+++   .+.+||.|.+.        |+.||||+|||+++....+.
T Consensus        22 ~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~~~~   93 (106)
T d1i1ja_          22 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPG   93 (106)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSCC
T ss_pred             eEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccccCcc
Confidence            469999999999999999999999999976   35789999864        45799999999988665443

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.5e-10  Score=97.85  Aligned_cols=177  Identities=15%  Similarity=0.205  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 017467           85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM  164 (371)
Q Consensus        85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~  164 (371)
                      +.|++.++.+.....--......||+++..+|...+      .++.++..+|++++.|+...+.+...+...|. ||...
T Consensus        23 ~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~   95 (200)
T d1i4da_          23 ESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP------ELQEEFGYNAETQKLLCKNGETLLGAVNFFVS-SINTL   95 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence            567777787777777777777788999988886533      57889999999999999999999988876665 55556


Q ss_pred             hhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017467          165 ITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ  244 (371)
Q Consensus       165 ~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~q  244 (371)
                      +.+++. +.+..-..|++.|.+++.....+.+...+.+.. .+  ..+|..|++++++.+..+..++.++..-|..++..
T Consensus        96 ~~~~~~-~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~~-~~--~~kl~~ae~~~~~a~~~fe~~~~~~~~~l~~l~~~  171 (200)
T d1i4da_          96 VTKTME-DTLMTVKQYEAARLEYDAYRTDLEELSLGPRDA-GT--RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEEN  171 (200)
T ss_dssp             HHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhhccccc-ch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555544 446777788888888888888776554443211 12  25899999999999999999999999999998875


Q ss_pred             hhHhhHhhHHHHHHHHHHHHHHHHHHHH
Q 017467          245 QHRLTFQRLVAMVEGEKNYHLRIAAILG  272 (371)
Q Consensus       245 qqrlt~~~L~~~veae~~yhq~~~~IL~  272 (371)
                      ....-..+|..+++++..||+++...|+
T Consensus       172 r~~~~~~~l~~~~~~~~~f~~~~~~~le  199 (200)
T d1i4da_         172 KIKVMHKQLLLFHNAVSAYFAGNQKQLE  199 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444467899999999999999998875

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.26  E-value=2.1e-12  Score=104.18  Aligned_cols=53  Identities=23%  Similarity=0.401  Sum_probs=48.9

Q ss_pred             ceEEEEecCCCCCCCCC-------ccCCCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCce
Q 017467          303 YFLAEAIHPFTAASEKE-------LSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANV  355 (371)
Q Consensus       303 ~~~arALydfea~~~~E-------Lsf~~GDiI~Vl~~~d~GWweGe~---~Gk~G~FPsnYV  355 (371)
                      .+.|+|+|||++..+++       |+|++||+|.|++..+++||.|++   +|+.||||++|+
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            46799999999999988       999999999999999999999997   688999999874

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=3.4e-11  Score=103.08  Aligned_cols=54  Identities=17%  Similarity=0.346  Sum_probs=49.2

Q ss_pred             ceEEEEecCCCCCCCCC-------ccCCCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCcee
Q 017467          303 YFLAEAIHPFTAASEKE-------LSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANVE  356 (371)
Q Consensus       303 ~~~arALydfea~~~~E-------Lsf~~GDiI~Vl~~~d~GWweGe~---~Gk~G~FPsnYVE  356 (371)
                      .+.|+|+|||++..+++       |+|++||+|.|++..+++||.|+.   +|..||||++|+.
T Consensus        23 ~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          23 AFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             CEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHH
T ss_pred             cEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhh
Confidence            35799999999999987       999999999999999999999996   6899999998753

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=2.4e-08  Score=87.08  Aligned_cols=204  Identities=17%  Similarity=0.193  Sum_probs=139.4

Q ss_pred             ccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHH
Q 017467           55 DVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAI  134 (371)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~  134 (371)
                      +-. +||.=-...+.|..+=   ...++++++    +++++............+|+++..++...+     +..    -.
T Consensus         7 ~~T-~D~~fe~~~~~~~~~e---~~l~~l~k~----~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-----~~~----~~   69 (217)
T d1urua_           7 DRT-ADEIFDDHLNNFNRQQ---ASANRLQKE----FNNYIRCVRAAQAASKTLMDSVCEIYEPQW-----SGY----DA   69 (217)
T ss_dssp             TCC-HHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHSCTTS-----TTH----HH
T ss_pred             CCc-ccHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----chH----HH
Confidence            344 3876655555555553   333444444    444444444445556678888888876655     222    24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHH
Q 017467          135 YGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLH  214 (371)
Q Consensus       135 ~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~  214 (371)
                      +......+++...++...+..+|++||+.+..-  ....+.+-...++.+..++.....+.+...|.+.+  .+ ..++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~v~~pL~~~~~~--~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~~--~~-~~~l~  144 (217)
T d1urua_          70 LQAQTGASESLWADFAHKLGDQVLIPLNTYTGQ--FPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKR--KD-DVKLT  144 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBT--TB-CCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cc-hhhhH
Confidence            456667788888999999999999999999862  23334444455566666666666666554443221  22 24677


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467          215 AAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS  280 (371)
Q Consensus       215 ~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s  280 (371)
                      .|+.+++..+..+..++.++...|+.++......-...+.++++++..||.++.+++.+|...+..
T Consensus       145 ~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~  210 (217)
T d1urua_         145 KGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDK  210 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888888888888888899999988875444445679999999999999999999999887754

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.2e-08  Score=87.52  Aligned_cols=163  Identities=9%  Similarity=0.082  Sum_probs=116.7

Q ss_pred             hhHhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhh
Q 017467          106 TKLSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMR  184 (371)
Q Consensus       106 ~~l~e~~~kYg~e~~~-~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~R  184 (371)
                      ..+++.+..++..... +.++..++.|+..||++++.|...+..|...+...+++||..++.+|++.. +.+-..|++.+
T Consensus        54 ~~f~~~L~~~~~~~~~~~~dd~~~~~~l~~f~~~~~el~~~~~~l~~~~~~~~~~pL~~f~~~di~~~-ke~kk~fek~~  132 (268)
T d2elba1          54 HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEI-LTLKEVFQIAS  132 (268)
T ss_dssp             HHHHHHHTTGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHH
Confidence            3566666666665331 234567899999999999999999999999999999999999999998765 56666778888


Q ss_pred             hHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHH
Q 017467          185 QEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYH  264 (371)
Q Consensus       185 q~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yh  264 (371)
                      .++++....+.+.. |.+.   ++  .....|+..+...+..+....-+....|+.++......-+..++++++++..||
T Consensus       133 ~~yd~~l~k~~~~~-k~k~---~~--~~~~Ea~~~l~~~r~~f~~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff  206 (268)
T d2elba1         133 NDHDAAINRYSRLS-KKRE---ND--KVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFF  206 (268)
T ss_dssp             HHHHHHHHHHHTCC-CC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-ccCC---cc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877666553221 2221   12  233457777888888777777777778888876444444778999999999999


Q ss_pred             HHHHHHH-HHhH
Q 017467          265 LRIAAIL-GDVE  275 (371)
Q Consensus       265 q~~~~IL-~~L~  275 (371)
                      +++.+++ +.+.
T Consensus       207 ~~~~~~l~~~l~  218 (268)
T d2elba1         207 KMGSENLNEQLE  218 (268)
T ss_dssp             HHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            8888865 3344

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1.8e-09  Score=91.68  Aligned_cols=53  Identities=15%  Similarity=0.385  Sum_probs=47.6

Q ss_pred             ceEEEEecCCCCCCCCC-------ccCCCCCEEEEEEeCCCCeeEEEe---CCeeeEecCCce
Q 017467          303 YFLAEAIHPFTAASEKE-------LSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPSANV  355 (371)
Q Consensus       303 ~~~arALydfea~~~~E-------Lsf~~GDiI~Vl~~~d~GWweGe~---~Gk~G~FPsnYV  355 (371)
                      .+.++|+|+|++..+++       |+|+.||+|.|++..+++||.|+.   +|..||||++|+
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            36699999999988777       899999999999999999999996   578899999884

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=2.4  Score=35.98  Aligned_cols=95  Identities=16%  Similarity=0.027  Sum_probs=57.1

Q ss_pred             HHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC---CCCCCchhHHHHHHHHHHHHHHHHH
Q 017467           70 LEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ---NINENILPKAAAIYGDARKHVEKEQ  146 (371)
Q Consensus        70 ~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~---~~~~~~l~~A~~~~g~a~~~~~~~~  146 (371)
                      +|.|+.-|..+..|=.+|+.-+.--...=.-..-...+|   +.+|......   ....+.+..|...+-+....+++..
T Consensus         2 ~~~l~~~~~~g~~~~~~~~~~~~eRa~iE~~Yak~L~kL---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~   78 (279)
T d2efka1           2 FEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSL---VKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQR   78 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHSCC-------CTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhccccccCcccchHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555544433332222222223   2233211000   0122457778888888899999999


Q ss_pred             HHHHHHHHhhhhhHHHHhhhc
Q 017467          147 EDFNRLLSSQVLDPLRAMITG  167 (371)
Q Consensus       147 ~~l~~~~~~~~~~PL~~~~~~  167 (371)
                      ..+...+..++++||..+...
T Consensus        79 ~~~~~~l~~~i~~~l~~~~~~   99 (279)
T d2efka1          79 ELVAENLSVRVCLELTKYSQE   99 (279)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998864

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.073  Score=39.85  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=35.5

Q ss_pred             CCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCce
Q 017467          316 SEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANV  355 (371)
Q Consensus       316 ~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYV  355 (371)
                      ...+|++++|+.|.|+...++|-|.++. .|+.||+|.+++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            4568999999999999999999999995 899999998775

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=3.2  Score=35.22  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=37.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467          125 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT  166 (371)
Q Consensus       125 ~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~  166 (371)
                      .+.+..+...+-.....++.....+...+..++++||..+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~a~~h~~~a~~l~~~i~~~l~~~~~  107 (288)
T d2efla1          66 KYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQ  107 (288)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345778888888888999999999999999999999999876

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.85  E-value=12  Score=29.76  Aligned_cols=13  Identities=23%  Similarity=0.432  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHH
Q 017467          211 AKLHAAEARMQEL  223 (371)
Q Consensus       211 ~kl~~Ae~Kl~el  223 (371)
                      .++..|..+|+.+
T Consensus       145 ~~~~~a~~~fe~~  157 (200)
T d1i4da_         145 ATFQAHRDKYEKL  157 (200)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5677777777655