Citrus Sinensis ID: 017485
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | 2.2.26 [Sep-21-2011] | |||||||
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.994 | 0.723 | 0.732 | 1e-167 | |
| Q8L7R8 | 514 | Sugar transport protein 3 | yes | no | 0.981 | 0.708 | 0.634 | 1e-128 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.991 | 0.699 | 0.543 | 1e-120 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.986 | 0.699 | 0.557 | 1e-117 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.978 | 0.706 | 0.535 | 1e-116 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.981 | 0.697 | 0.550 | 1e-116 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.967 | 0.699 | 0.535 | 1e-116 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.978 | 0.702 | 0.542 | 1e-115 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.981 | 0.708 | 0.562 | 1e-115 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.973 | 0.702 | 0.558 | 1e-115 |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 587 bits (1512), Expect = e-167, Method: Compositional matrix adjust.
Identities = 271/370 (73%), Positives = 322/370 (87%), Gaps = 1/370 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLIFGRVLLG+G+GFANQ+VPLYLSEMAPP++RGA N GFQ + IG LSANL+NYGT+K
Sbjct: 134 MLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEK 193
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
I+GGWGWRISLAMAA PA+ILT GALF+PETPNS+IQRSND ++AK MLQRVRGT DV+A
Sbjct: 194 IEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQA 253
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL+DLI+AS IS+TI HPFK I++RKYRPQLVMA+ IPFFQQVTGIN+I YAP+L RT+
Sbjct: 254 ELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTI 313
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
L ESAS LLS++VTG +G+ T ISM++VDKLGR+ LF+ GG+QMFV+Q+++GSIMAAE
Sbjct: 314 GLEESAS-LLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAE 372
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
LGDHGG +GYAY++L+L+C+Y AGF +SWGPL WLVPSEIFPLEIRSAGQSI VAV +
Sbjct: 373 LGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFL 432
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQTFL+MLCHFK+GIFFFFGGWV+VMT F+H LPETK VPIE+MD VWR HWFW
Sbjct: 433 FTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFW 492
Query: 361 KKYVGEVDEE 370
KK +GE E
Sbjct: 493 KKIIGEEAAE 502
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Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 234/369 (63%), Positives = 291/369 (78%), Gaps = 5/369 (1%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI R+LLG+G+GFANQSVPLYLSEMAP K+RGA + GFQ+C+ IG LSAN++NY TQ
Sbjct: 141 MLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVINYETQN 200
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IK GWRISLA AA PASILT+G+LF+PETPNSIIQ + D K + ML+RVRGT DV+
Sbjct: 201 IK--HGWRISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQD 258
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL DL+ ASS S T ++ F K++QRKYRP+LVMA++IPFFQQVTGIN++ YAPVL RT+
Sbjct: 259 ELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQVTGINVVAFYAPVLYRTV 318
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI-MAA 239
ES SL+ S +VTG +GT T++SM++VD++GRK LFL+GG+QM VSQV IG I M A
Sbjct: 319 GFGESGSLM-STLVTGIVGTSSTLLSMLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMVA 377
Query: 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL 299
++ D G EGY Y ++VLVCVY AGF +SWGPL WLVPSEIFPLEIRS QS+TVAV
Sbjct: 378 DVHD-GVIKEGYGYAVVVLVCVYVAGFGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSF 436
Query: 300 VFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWF 359
VF F AQ+ MLC F+AGIFFF+GGW++VMT + LFLPETKNVPIE++ +W +HWF
Sbjct: 437 VFTFAVAQSAPPMLCKFRAGIFFFYGGWLVVMTVAVQLFLPETKNVPIEKVVGLWEKHWF 496
Query: 360 WKKYVGEVD 368
W++ + D
Sbjct: 497 WRRMTSKRD 505
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 276/372 (74%), Gaps = 4/372 (1%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG G+GFANQ+VPL+LSE+AP + RG NI FQ+ + IG+L ANL+NYGT K
Sbjct: 136 MLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAK 195
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IKGGWGWR+SL +A PA +LTVGAL + ETPNS+++R + K +L+R+RGT +VE
Sbjct: 196 IKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGR-LDEGKAVLRRIRGTDNVEP 254
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E DL+ AS ++K + HPF+ ++QR+ RPQLV+A+ + FQQ TGIN I YAPVL TL
Sbjct: 255 EFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTL 314
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
ASL SAVVTG + + T++S+ VDK+GR++L L G+QMF SQV+I I+ +
Sbjct: 315 GFGSDASLY-SAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVK 373
Query: 241 LGDHG-GFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL 299
+ D S+G+A L++V++C Y A F++SWGPL WL+PSE FPLE RSAGQS+TV V L
Sbjct: 374 VTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 433
Query: 300 VFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQM-DKVWRQHW 358
+F F AQ FL+MLCHFK GIF FF WV++M+ F+ LPETKN+PIE+M ++VW++HW
Sbjct: 434 LFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHW 493
Query: 359 FWKKYVGEVDEE 370
FW +++ + ++
Sbjct: 494 FWARFMDDHNDH 505
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 276/373 (73%), Gaps = 7/373 (1%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG GIGFANQSVPLYLSEMAP K+RGA NIGFQ+ + IG+L AN+LNY K
Sbjct: 137 MLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNYFFAK 196
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IKGGWGWR+SL A PA I+TVG+L +P+TPNS+I+R ++A+ L+RVRG DV+
Sbjct: 197 IKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQH-EEARAHLKRVRGVEDVDE 255
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E DL+ AS SK + HP++ ++QRKYRP L MAI IPFFQQ+TGIN+I YAPVL T+
Sbjct: 256 EFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTGINVIMFYAPVLFDTI 315
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
A+L+ SAV+TG + T++S+ VDK GR+ LFL GG+QM + Q I+ + + A+
Sbjct: 316 GFGSDAALM-SAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAK 374
Query: 241 LGDHGG---FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV 297
G G + YA ++++ +C+Y +GF++SWGPL WLVPSEIFPLEIRSA QS+ V+V
Sbjct: 375 FGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSV 434
Query: 298 CLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQH 357
+ F F AQ FL MLCH K G+F FF +V++M+ F++ FLPETK +PIE+M +VW+QH
Sbjct: 435 NMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPETKGIPIEEMGQVWKQH 494
Query: 358 WFWKKYVGEVDEE 370
W+W +YV VDE+
Sbjct: 495 WYWSRYV--VDED 505
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Ricinus communis (taxid: 3988) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/368 (53%), Positives = 268/368 (72%), Gaps = 5/368 (1%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG+G+GFANQS P+YLSEMAP K RGA NIGFQ+ + IG+L ANL+NYGT K
Sbjct: 137 MLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSK 196
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+ GWR+SL +AA PA ++ +G+ +P+TPNS+++R + ++AK+ML+++RG +V+
Sbjct: 197 M-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKN-EEAKQMLKKIRGADNVDH 254
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E DLI A +K + +P+K I++ KYRP L+ IPFFQQ+TGIN+I YAPVL +TL
Sbjct: 255 EFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTL 314
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
+ A+L+ SAV+TG + + T +S+ VD+ GR++LFL GGIQMF+ Q+++GS + A
Sbjct: 315 GFGDDAALM-SAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGAR 373
Query: 241 LGDHGG--FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVC 298
G G + A IL +CVY AGF++SWGPL WLVPSEI PLEIR AGQ+I V+V
Sbjct: 374 FGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVN 433
Query: 299 LVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHW 358
+ F F Q FL MLCH K G+F+FF V +MT F++ LPETK VPIE+M +VW+QHW
Sbjct: 434 MFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHW 493
Query: 359 FWKKYVGE 366
FWKKY+ E
Sbjct: 494 FWKKYIPE 501
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 274/369 (74%), Gaps = 5/369 (1%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG GIGFANQ+VPLYLSEMAP K+RGA NIGFQ+ + IG+L A +LNY K
Sbjct: 135 MLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAK 194
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IKGGWGWR+SL A PA I+T+G+L +P+TPNS+I+R ++AK L+R+RG DV
Sbjct: 195 IKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQH-EEAKTKLRRIRGVDDVSQ 253
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E +DL+ AS S++I HP++ +++RKYRP L MA++IPFFQQ+TGIN+I YAPVL T+
Sbjct: 254 EFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTI 313
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
+ ASL+ SAVVTG + T++S+ VD+ GR+ LFL GG QM + Q ++ + + A+
Sbjct: 314 GFTTDASLM-SAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAK 372
Query: 241 LGDHGGFSE---GYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV 297
G G E YA +++ +C+Y AGF++SWGPL WLVPSEIFPLEIRSA QSITV+V
Sbjct: 373 FGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSV 432
Query: 298 CLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQH 357
++F F AQ FL MLCH K G+F F +V+VM+ F+++FLPETK +PIE+M +VWR H
Sbjct: 433 NMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSH 492
Query: 358 WFWKKYVGE 366
W+W ++V +
Sbjct: 493 WYWSRFVED 501
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Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/362 (53%), Positives = 269/362 (74%), Gaps = 3/362 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
ML+ GR++LG+GIGF NQ+VPLYLSE+AP RG N+ FQ+ IG+ +AN++NYGTQ+
Sbjct: 138 MLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQ 197
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+K WGWR+SL +AA PA ++T+G F+PETPNS+++R ++ +R+L ++RGT +V A
Sbjct: 198 LKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLT-ERGRRVLVKLRGTENVNA 255
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL D++ AS ++ +I HPF+ I+Q+++RPQLVMAI +P FQ +TGIN I YAPVL +T+
Sbjct: 256 ELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTM 315
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
+ASL SA+ TG + + T IS+ LVD+LGR+ L + GGIQM + QVI+ I+ +
Sbjct: 316 GFGGNASLYSSAL-TGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVK 374
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
GD+ S+GY+ ++++ +C++ F +SWGPL W +PSEIFPLE RSAGQSITVAV L+
Sbjct: 375 FGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLL 434
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQ FL +LC FK GIF FF GWV VMT F++ LPETK VPIE+M +W +HWFW
Sbjct: 435 FTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFW 494
Query: 361 KK 362
KK
Sbjct: 495 KK 496
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 269/369 (72%), Gaps = 6/369 (1%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG+G+GFANQS P+YLSEMAP K RGA NIGFQ+ + IG+L ANL+NYGT +
Sbjct: 137 MLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQ 196
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+ GWR+SL +AA PA I+ +G+ +P+TPNS+++R Q A+ MLQ++RG +V+
Sbjct: 197 MAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQ-AREMLQKIRGADNVDE 254
Query: 121 ELNDLIRASSISKTINHPFKKIIQR-KYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT 179
E DL A +K +++P+K I Q+ KYRP LV IPFFQQ+TGIN+I YAPVL +T
Sbjct: 255 EFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKT 314
Query: 180 LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239
L ++ ASL+ SAV+TG + V T++S+ VD+ GR+ILFL GGIQM VSQ+++G+++
Sbjct: 315 LGFADDASLI-SAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGM 373
Query: 240 ELGDHGG--FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV 297
+ G G + A IL +C+Y AGF++SWGPL WLVPSEI PLEIR AGQ+I V+V
Sbjct: 374 KFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSV 433
Query: 298 CLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQH 357
+ F F Q FL MLCH K G+F+FFGG V VMT F++ LPETK VPIE+M +VW+QH
Sbjct: 434 NMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQH 493
Query: 358 WFWKKYVGE 366
FWK+Y+ +
Sbjct: 494 PFWKRYMPD 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/368 (56%), Positives = 272/368 (73%), Gaps = 4/368 (1%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
ML+ GR+LLG G+GFANQSVP+YLSEMAPP RGAFN GFQV + G++ A ++NY T +
Sbjct: 134 MLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFTAQ 193
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+KG GWRISL +A PA ++ +GAL +P+TPNS+I+R ++AK MLQ +RGT +V+
Sbjct: 194 MKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYT-EEAKEMLQSIRGTNEVDE 252
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E DLI AS SK + HP+K I+ +YRPQL+M IPFFQQ+TGIN+I YAPVL +TL
Sbjct: 253 EFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQTL 312
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
ASLL SA+VTG I + T +S+ VD+ GR+ILFL GGIQM VSQ+ IG+++ +
Sbjct: 313 GFGSKASLL-SAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVK 371
Query: 241 LG--DHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVC 298
G G + A LI+ L+C+Y AGF++SWGPL WLVPSEI PLEIRSA Q+I V+V
Sbjct: 372 FGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQAINVSVN 431
Query: 299 LVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHW 358
+ F F AQ FL MLCH K G+FFFF +V++MT F++L LPETKNVPIE+M++VW+ HW
Sbjct: 432 MFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPIEEMNRVWKAHW 491
Query: 359 FWKKYVGE 366
FW K++ +
Sbjct: 492 FWGKFIPD 499
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/365 (55%), Positives = 268/365 (73%), Gaps = 4/365 (1%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+ LG+G+GFANQSVPLYLSEMAP K RGA NIGFQ+ + IG+L+AN++NY T K
Sbjct: 137 MLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVTPK 196
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
++ G GWR+SL +A PA ++ VG F+P+TPNSI++R N +KAK MLQ++RGT +VE
Sbjct: 197 LQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNK-EKAKEMLQKIRGTMEVEH 255
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E N+L A +K + HP+ I+Q +YRPQL IPFFQQ+TGIN+I YAPVL +T+
Sbjct: 256 EFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKTI 315
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
ASL+ SAV+TG + + TI+S+ VDK GR+ LFL GG QM V+Q+ +GS++ +
Sbjct: 316 GFGNDASLI-SAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWK 374
Query: 241 LG--DHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVC 298
G G S A +IL L+C+Y AGF++SWGPL WLVPSEI PLEIRSAGQS+ V+V
Sbjct: 375 FGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVN 434
Query: 299 LVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHW 358
+ F FF Q FL MLCH K G+F+FF G V++MT F++ LPETK VPIE+M KVW++H
Sbjct: 435 MFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEMGKVWKEHR 494
Query: 359 FWKKY 363
+W KY
Sbjct: 495 YWGKY 499
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | ||||||
| 255539853 | 510 | sugar transporter, putative [Ricinus com | 0.994 | 0.723 | 0.732 | 1e-165 | |
| 1708191 | 510 | RecName: Full=Hexose carrier protein HEX | 0.994 | 0.723 | 0.732 | 1e-165 | |
| 224129904 | 516 | predicted protein [Populus trichocarpa] | 0.997 | 0.717 | 0.700 | 1e-161 | |
| 147816021 | 508 | hypothetical protein VITISV_025873 [Viti | 0.983 | 0.718 | 0.726 | 1e-161 | |
| 47078687 | 508 | putative hexose transporter [Vitis vinif | 0.983 | 0.718 | 0.726 | 1e-161 | |
| 225466031 | 508 | PREDICTED: hexose carrier protein HEX6 [ | 0.983 | 0.718 | 0.726 | 1e-161 | |
| 224139190 | 509 | predicted protein [Populus trichocarpa] | 0.994 | 0.724 | 0.735 | 1e-159 | |
| 357455795 | 509 | Hexose carrier [Medicago truncatula] gi| | 0.991 | 0.722 | 0.720 | 1e-157 | |
| 356515367 | 510 | PREDICTED: hexose carrier protein HEX6-l | 0.994 | 0.723 | 0.708 | 1e-156 | |
| 449458415 | 513 | PREDICTED: hexose carrier protein HEX6-l | 0.994 | 0.719 | 0.697 | 1e-154 |
| >gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 271/370 (73%), Positives = 322/370 (87%), Gaps = 1/370 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLIFGRVLLG+G+GFANQ+VPLYLSEMAPP++RGA N GFQ + IG LSANL+NYGT+K
Sbjct: 134 MLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEK 193
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
I+GGWGWRISLAMAA PA+ILT GALF+PETPNS+IQRSND ++AK MLQRVRGT DV+A
Sbjct: 194 IEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQA 253
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL+DLI+AS IS+TI HPFK I++RKYRPQLVMA+ IPFFQQVTGIN+I YAP+L RT+
Sbjct: 254 ELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTI 313
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
L ESAS LLS++VTG +G+ T ISM++VDKLGR+ LF+ GG+QMFV+Q+++GSIMAAE
Sbjct: 314 GLEESAS-LLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAE 372
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
LGDHGG +GYAY++L+L+C+Y AGF +SWGPL WLVPSEIFPLEIRSAGQSI VAV +
Sbjct: 373 LGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFL 432
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQTFL+MLCHFK+GIFFFFGGWV+VMT F+H LPETK VPIE+MD VWR HWFW
Sbjct: 433 FTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFW 492
Query: 361 KKYVGEVDEE 370
KK +GE E
Sbjct: 493 KKIIGEEAAE 502
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 271/370 (73%), Positives = 322/370 (87%), Gaps = 1/370 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLIFGRVLLG+G+GFANQ+VPLYLSEMAPP++RGA N GFQ + IG LSANL+NYGT+K
Sbjct: 134 MLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEK 193
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
I+GGWGWRISLAMAA PA+ILT GALF+PETPNS+IQRSND ++AK MLQRVRGT DV+A
Sbjct: 194 IEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQA 253
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL+DLI+AS IS+TI HPFK I++RKYRPQLVMA+ IPFFQQVTGIN+I YAP+L RT+
Sbjct: 254 ELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTI 313
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
L ESAS LLS++VTG +G+ T ISM++VDKLGR+ LF+ GG+QMFV+Q+++GSIMAAE
Sbjct: 314 GLEESAS-LLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAE 372
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
LGDHGG +GYAY++L+L+C+Y AGF +SWGPL WLVPSEIFPLEIRSAGQSI VAV +
Sbjct: 373 LGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFL 432
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQTFL+MLCHFK+GIFFFFGGWV+VMT F+H LPETK VPIE+MD VWR HWFW
Sbjct: 433 FTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFW 492
Query: 361 KKYVGEVDEE 370
KK +GE E
Sbjct: 493 KKIIGEEAAE 502
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 264/377 (70%), Positives = 321/377 (85%), Gaps = 7/377 (1%)
Query: 1 MLIFGRVLLGIGIGFANQS-------VPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANL 53
MLIFGRVLLG+G+GFANQ+ VPLYLSEMAPP++RGA N GFQ+C+AIGVLSAN
Sbjct: 134 MLIFGRVLLGVGVGFANQAGAEPRRAVPLYLSEMAPPRYRGAINNGFQLCIAIGVLSANF 193
Query: 54 LNYGTQKIKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVR 113
+N+GT+KI+GGWGWRISLAM A PA+ LT+G+LF+PETPNS+IQR ND QKAK MLQR+R
Sbjct: 194 INFGTEKIEGGWGWRISLAMGAIPATFLTIGSLFLPETPNSLIQRFNDEQKAKTMLQRIR 253
Query: 114 GTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYA 173
GT DVEAE NDLI+AS +SK+I HP KKIIQ+KYRPQLVMAI IPFFQQVTGIN+I YA
Sbjct: 254 GTTDVEAEFNDLIKASLVSKSIEHPIKKIIQKKYRPQLVMAIAIPFFQQVTGINVISFYA 313
Query: 174 PVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVII 233
P+L RT+ LSES SL++SA++ G +GT T +SM++VDKLGR+++ + GG+QMFVSQ++I
Sbjct: 314 PILFRTIGLSESVSLIMSALIAGVVGTASTFLSMLVVDKLGRRVMLICGGVQMFVSQIMI 373
Query: 234 GSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSI 293
GSIMAA+LGDHG ++GYAY +L ++ +Y +GF++SWGPL WLVPSEIFPLEIRS GQSI
Sbjct: 374 GSIMAAQLGDHGSINKGYAYFVLTMISIYVSGFAWSWGPLGWLVPSEIFPLEIRSVGQSI 433
Query: 294 TVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKV 353
VAV VF F AQTFLAMLCHFK+GIFFFFGGWV VMT F++L LPETK VPIE MD+V
Sbjct: 434 VVAVNFVFTFIVAQTFLAMLCHFKSGIFFFFGGWVAVMTAFVYLLLPETKKVPIEVMDRV 493
Query: 354 WRQHWFWKKYVGEVDEE 370
WR+HWFWK+ V E D++
Sbjct: 494 WREHWFWKRIVEEFDDK 510
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/366 (72%), Positives = 321/366 (87%), Gaps = 1/366 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
M+I GR+LLG+G+GFANQ+VPLYLSEMAPP++RGA N GFQ + +G LSANL+N+GT+K
Sbjct: 134 MVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEK 193
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IKGGWGWR+SLA+AA PASILT+GALF+PETPNS+IQRS D KA+ MLQRVRGT DV+A
Sbjct: 194 IKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQA 253
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL+DL++ASS++KTIN PFKKI+QRKYRPQLVMAI IPFFQQVTGIN+I YAPVL R +
Sbjct: 254 ELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAI 313
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
L SAS LLSAVVTG +G T ISM++VDKLGR++LFLVGGIQM VSQ+++G I+AAE
Sbjct: 314 GLGVSAS-LLSAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAE 372
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
LGDHGG S+ YA+L+L+L+CVY AGF +SWGPL WLVPSEIFPLEIRSAGQSITVAV +
Sbjct: 373 LGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFI 432
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQTFL+MLCHFK+GIFFFFGGWV++MT F++ LPETK++PIEQMD+VW++HWFW
Sbjct: 433 FTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKSIPIEQMDRVWKEHWFW 492
Query: 361 KKYVGE 366
K+ V E
Sbjct: 493 KRIVVE 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/366 (72%), Positives = 321/366 (87%), Gaps = 1/366 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
M+I GR+LLG+G+GFANQ+VPLYLSEMAPP++RGA N GFQ + +G LSANL+N+GT+K
Sbjct: 134 MVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEK 193
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IKGGWGWR+SLA+AA PASILT+GALF+PETPNS+IQRS D KA+ MLQRVRGT DV+A
Sbjct: 194 IKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQA 253
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL+DL++ASS++KTIN PFKKI+QRKYRPQLVMAI IPFFQQVTGIN+I YAPVL R +
Sbjct: 254 ELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAI 313
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
L SAS LLSAVVTG +G T ISM++VDKLGR++LFLVGGIQM VSQ+++G I+AAE
Sbjct: 314 GLGVSAS-LLSAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAE 372
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
LGDHGG S+ YA+L+L+L+CVY AGF +SWGPL WLVPSEIFPLEIRSAGQSITVAV +
Sbjct: 373 LGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFI 432
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQTFL+MLCHFK+GIFFFFGGWV++MT F++ LPETK++PIEQMD+VW++HWFW
Sbjct: 433 FTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKSIPIEQMDRVWKEHWFW 492
Query: 361 KKYVGE 366
K+ V E
Sbjct: 493 KRIVVE 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/366 (72%), Positives = 321/366 (87%), Gaps = 1/366 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
M+I GR+LLG+G+GFANQ+VPLYLSEMAPP++RGA N GFQ + +G LSANL+N+GT+K
Sbjct: 134 MVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEK 193
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IKGGWGWR+SLA+AA PASILT+GALF+PETPNS+IQRS D KA+ MLQRVRGT DV+A
Sbjct: 194 IKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQA 253
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL+DL++ASS++KTIN PFKKI+QRKYRPQLVMAI IPFFQQVTGIN+I YAPVL R +
Sbjct: 254 ELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAI 313
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
L SAS LLSAVVTG +G T ISM++VDKLGR++LFLVGGIQM VSQ+++G I+AAE
Sbjct: 314 GLGVSAS-LLSAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAE 372
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
LGDHGG S+ YA+L+L+L+CVY AGF +SWGPL WLVPSEIFPLEIRSAGQSITVAV +
Sbjct: 373 LGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFI 432
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQTFL+MLCHFK+GIFFFFGGWV++MT F++ LPETK++PIEQMD+VW++HWFW
Sbjct: 433 FTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKSIPIEQMDRVWKEHWFW 492
Query: 361 KKYVGE 366
K+ V E
Sbjct: 493 KRIVVE 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139190|ref|XP_002323002.1| predicted protein [Populus trichocarpa] gi|222867632|gb|EEF04763.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 272/370 (73%), Positives = 326/370 (88%), Gaps = 1/370 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLIFGRVLLG+G+GFANQ+VPLYLSEMAPP++RGA N GFQ + IG LSANL+NYGT+K
Sbjct: 135 MLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGIGALSANLINYGTEK 194
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IKGGWGWRISLA+AA PA+ILT+GA+F+PETPNS+IQ ++D ++AK MLQRVRGT DV+A
Sbjct: 195 IKGGWGWRISLALAAVPATILTLGAVFLPETPNSLIQLTDDTERAKLMLQRVRGTEDVQA 254
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL+DLI+ASSISKT+ HPFKKII+RKYRPQLVMAI IPFFQQVTGIN+I YAP+L RT+
Sbjct: 255 ELDDLIKASSISKTVEHPFKKIIKRKYRPQLVMAIAIPFFQQVTGINVIAFYAPILFRTI 314
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
L ESAS L+S+VVTG +GT T ISM++VDKLGR+ LF+ GG+QM VSQ+++G IMAA+
Sbjct: 315 GLGESAS-LMSSVVTGIVGTGSTFISMLVVDKLGRRALFIFGGVQMLVSQIMVGGIMAAQ 373
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
LGDHGG GYAY++L+L+C+Y AGFS+SWGPL WLVPSEIFPLEIRSAGQSI VAV +
Sbjct: 374 LGDHGGIGGGYAYVVLILICIYVAGFSWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFL 433
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQTFLAMLCHFK+GIFFFFGGWV+VMT F++ FLPETKN PIE+MD+VWR+H FW
Sbjct: 434 FTFIVAQTFLAMLCHFKSGIFFFFGGWVVVMTAFVYYFLPETKNTPIEKMDRVWREHGFW 493
Query: 361 KKYVGEVDEE 370
K VGE+DE+
Sbjct: 494 NKIVGEMDEQ 503
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 266/369 (72%), Positives = 313/369 (84%), Gaps = 1/369 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GRVLLG+GIGFANQ+VPLYLSEMA P++RGA NIGFQ+C+ IGVLSANL+N+GT+K
Sbjct: 135 MLILGRVLLGVGIGFANQAVPLYLSEMALPRYRGAINIGFQLCVGIGVLSANLINFGTEK 194
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IK GWGWRISLAMAA PA+ILT+GA F+PETPNSIIQ S + QKAK MLQ +RGT DV+
Sbjct: 195 IKDGWGWRISLAMAAVPATILTLGAFFLPETPNSIIQNSKNHQKAKLMLQSIRGTHDVQQ 254
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E DLI AS +S +I HPFK I+QRKYRPQLVMAI IPFFQQ TGIN+I YAP+L T+
Sbjct: 255 EFEDLIEASIMSNSIKHPFKNILQRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTI 314
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
L ESAS LLSAV+ G +GT T ISM++VDKLGR++LF+ GGIQMF SQ++IGSIMAA+
Sbjct: 315 GLGESAS-LLSAVMVGIVGTTSTFISMLIVDKLGRRVLFISGGIQMFFSQILIGSIMAAQ 373
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
LGDHG S+ YAYLILVL+C+Y AGF++SWGPL WLVPSEIFPLEIRSA QSITVAV +
Sbjct: 374 LGDHGEISKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVAVNFL 433
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQTFL+MLCHFK G FFFFGGWV++MT F++ LPETKNVPIEQMD+VWR+H+FW
Sbjct: 434 FTFIVAQTFLSMLCHFKYGTFFFFGGWVVIMTVFVYFLLPETKNVPIEQMDRVWREHFFW 493
Query: 361 KKYVGEVDE 369
K+ VG+ E
Sbjct: 494 KRIVGDKIE 502
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 263/371 (70%), Positives = 319/371 (85%), Gaps = 2/371 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG+G+GFANQ+VPLYLSEMA P+ RGA N GFQ+ + IG LSANL+NYGT+K
Sbjct: 135 MLIVGRLLLGVGVGFANQAVPLYLSEMALPRLRGAINNGFQLSIGIGALSANLINYGTEK 194
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
I+GGWGWR+SLAMAA PAS+LT+GALF+PETPNS+IQRS+D QKAK MLQR+RG DV+A
Sbjct: 195 IEGGWGWRMSLAMAAVPASVLTLGALFLPETPNSVIQRSHDKQKAKLMLQRIRGMEDVQA 254
Query: 121 ELNDLIRASSISKTIN-HPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT 179
EL+DLI+ASS SKT N K I++ +YRPQLVMA+ IPFFQQVTGIN+I YAP+L RT
Sbjct: 255 ELDDLIKASSPSKTNNKQSLKLILKGRYRPQLVMALAIPFFQQVTGINVIAFYAPLLFRT 314
Query: 180 LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239
+ L ESASLL SAV+TG +GT T ISM +VDKLGR+ LF++GGIQMFVSQ I+G IMA
Sbjct: 315 IGLGESASLL-SAVMTGVVGTGSTFISMFVVDKLGRRTLFMIGGIQMFVSQCIVGGIMAL 373
Query: 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL 299
L DHGG S+GYA+++LV++C+Y AGF +SWGPL WLVPSEIFPLEIRSAGQSITVAV
Sbjct: 374 HLKDHGGLSKGYAFVVLVMICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSF 433
Query: 300 VFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWF 359
+F F AQTFL+MLCHF++GIFFFFGGWV+VMTTF++ FLPETK+VP+EQM+KVW++HWF
Sbjct: 434 IFTFIVAQTFLSMLCHFRSGIFFFFGGWVVVMTTFVYYFLPETKSVPLEQMEKVWQEHWF 493
Query: 360 WKKYVGEVDEE 370
WK+ VGEV +
Sbjct: 494 WKRIVGEVSDR 504
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458415|ref|XP_004146943.1| PREDICTED: hexose carrier protein HEX6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 258/370 (69%), Positives = 312/370 (84%), Gaps = 1/370 (0%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GRVLLG+G+GFANQ+VPLYLSEMAP +RGA N GFQ + IG L+ANL+N+GTQK
Sbjct: 134 MLILGRVLLGVGVGFANQAVPLYLSEMAPSNYRGAINNGFQFSVGIGALTANLINFGTQK 193
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IK G GWRISLAMAA PASILT+GA F+PETPNS+IQR + Q MLQR+RGT +V++
Sbjct: 194 IKSGNGWRISLAMAAFPASILTLGAFFLPETPNSLIQRGSSHQLVDEMLQRIRGTPNVQS 253
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL DLI+AS I+K+I+ PFK I++RKYRPQLVMAI IPFFQQVTGIN+I YAPVL RT+
Sbjct: 254 ELADLIKASEIAKSIDSPFKNIMRRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRTI 313
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
L ESA+L SA++TG +G V T +SM++VDKLGR++LF+ GG+QMFVSQVI+G ++AA
Sbjct: 314 GLGESAALF-SAIMTGAVGLVTTFLSMLVVDKLGRRVLFIAGGLQMFVSQVIVGVLLAAL 372
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
LGD G S+GY+YL+LVL+CVY AGF +SWGPL WLVPSEIFPLEIRSAGQSITVA V
Sbjct: 373 LGDQGTVSKGYSYLLLVLICVYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVATNFV 432
Query: 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQTFLAMLCH KAGIFFFFGGWV+VMT F++ FLPETKN+PIE++++VWR+HWFW
Sbjct: 433 FTFIIAQTFLAMLCHLKAGIFFFFGGWVVVMTVFVYYFLPETKNLPIEKVERVWREHWFW 492
Query: 361 KKYVGEVDEE 370
++ VGE D E
Sbjct: 493 RRVVGEDDNE 502
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | ||||||
| TAIR|locus:2151596 | 514 | AT5G61520 [Arabidopsis thalian | 0.981 | 0.708 | 0.601 | 5e-115 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.991 | 0.704 | 0.529 | 7.1e-109 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.981 | 0.692 | 0.521 | 1.7e-105 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.975 | 0.704 | 0.535 | 7.5e-105 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.986 | 0.712 | 0.529 | 6.7e-104 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.978 | 0.706 | 0.516 | 4.2e-102 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.967 | 0.699 | 0.505 | 2.3e-101 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.973 | 0.698 | 0.514 | 6.4e-99 | |
| TAIR|locus:2009323 | 506 | AT1G34580 [Arabidopsis thalian | 0.967 | 0.709 | 0.462 | 1.9e-90 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.986 | 0.726 | 0.459 | 9.6e-89 |
| TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 222/369 (60%), Positives = 277/369 (75%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI R+LLG+G+GFANQSVPLYLSEMAP K+RGA + GFQ+C+ IG LSAN++NY TQ
Sbjct: 141 MLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVINYETQN 200
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IK GW RISLA AA PASILT+G+LF+PETPNSIIQ + D K + ML+RVRGT DV+
Sbjct: 201 IKHGW--RISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQD 258
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL DL+ ASS S T ++ F K++QRKYRP+LVMA++IPFFQQVTGIN++ YAPVL RT+
Sbjct: 259 ELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQVTGINVVAFYAPVLYRTV 318
Query: 181 KXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI-MAA 239
+VTG +GT T++SM++VD++GRK LFL+GG+QM VSQV IG I M A
Sbjct: 319 -GFGESGSLMSTLVTGIVGTSSTLLSMLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMVA 377
Query: 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL 299
++ D G EGY Y ++VLVCVY AGF +SWGPL WLVPSEIFPLEIRS QS+TVAV
Sbjct: 378 DVHD-GVIKEGYGYAVVVLVCVYVAGFGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSF 436
Query: 300 VFIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWF 359
VF F AQ+ MLC F+A W++VMT + LFLPETKNVPIE++ +W +HWF
Sbjct: 437 VFTFAVAQSAPPMLCKFRAGIFFFYGGWLVVMTVAVQLFLPETKNVPIEKVVGLWEKHWF 496
Query: 360 WKKYVGEVD 368
W++ + D
Sbjct: 497 WRRMTSKRD 505
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 198/374 (52%), Positives = 265/374 (70%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG GIGFANQ+VPLYLSEMAP K+RGA NIGFQ+ + IG+L A +LNY K
Sbjct: 135 MLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAK 194
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IKGGWGWR+SL A PA I+T+G+L +P+TPNS+I+R ++AK L+R+RG DV
Sbjct: 195 IKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQH-EEAKTKLRRIRGVDDVSQ 253
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E +DL+ AS S++I HP++ +++RKYRP L MA++IPFFQQ+TGIN+I YAPVL T+
Sbjct: 254 EFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTI 313
Query: 181 KXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
VVTG + T++S+ VD+ GR+ LFL GG QM + Q ++ + + A+
Sbjct: 314 -GFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAK 372
Query: 241 LGDHGGFSE---GYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV 297
G G E YA +++ +C+Y AGF++SWGPL WLVPSEIFPLEIRSA QSITV+V
Sbjct: 373 FGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSV 432
Query: 298 CLVFIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQMDKVWRQH 357
++F F AQ FL MLCH K +V+VM+ F+++FLPETK +PIE+M +VWR H
Sbjct: 433 NMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSH 492
Query: 358 WFWKKYVGEVDEEG 371
W+W ++V E E G
Sbjct: 493 WYWSRFV-EDGEYG 505
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 192/368 (52%), Positives = 264/368 (71%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG G+GFANQ+VPL+LSE+AP + RG NI FQ+ + IG+L ANL+NYGT K
Sbjct: 136 MLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAK 195
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
IKGGWGWR+SL +A PA +LTVGAL + ETPNS+++R + K +L+R+RGT +VE
Sbjct: 196 IKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGR-LDEGKAVLRRIRGTDNVEP 254
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E DL+ AS ++K + HPF+ ++QR+ RPQLV+A+ + FQQ TGIN I YAPVL TL
Sbjct: 255 EFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTL 314
Query: 181 KXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
VVTG + + T++S+ VDK+GR++L L G+QMF SQV+I I+ +
Sbjct: 315 -GFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVK 373
Query: 241 LGDHG-GFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL 299
+ D S+G+A L++V++C Y A F++SWGPL WL+PSE FPLE RSAGQS+TV V L
Sbjct: 374 VTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 433
Query: 300 VFIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQM-DKVWRQHW 358
+F F AQ FL+MLCHFK WV++M+ F+ LPETKN+PIE+M ++VW++HW
Sbjct: 434 LFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHW 493
Query: 359 FWKKYVGE 366
FW +++ +
Sbjct: 494 FWARFMDD 501
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 196/366 (53%), Positives = 259/366 (70%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
ML+ GR+LLG G+GFANQSVP+YLSEMAPP RGAFN GFQV + G++ A ++NY T +
Sbjct: 134 MLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFTAQ 193
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+KG GWRISL +A PA ++ +GAL +P+TPNS+I+R ++AK MLQ +RGT +V+
Sbjct: 194 MKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYT-EEAKEMLQSIRGTNEVDE 252
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E DLI AS SK + HP+K I+ +YRPQL+M IPFFQQ+TGIN+I YAPVL +TL
Sbjct: 253 EFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQTL 312
Query: 181 KXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
+VTG I + T +S+ VD+ GR+ILFL GGIQM VSQ+ IG+++ +
Sbjct: 313 -GFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVK 371
Query: 241 LG--DHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVC 298
G G + A LI+ L+C+Y AGF++SWGPL WLVPSEI PLEIRSA Q+I V+V
Sbjct: 372 FGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQAINVSVN 431
Query: 299 LVFIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHW 358
+ F F AQ FL MLCH K +V++MT F++L LPETKNVPIE+M++VW+ HW
Sbjct: 432 MFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPIEEMNRVWKAHW 491
Query: 359 FWKKYV 364
FW K++
Sbjct: 492 FWGKFI 497
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
Identities = 196/370 (52%), Positives = 258/370 (69%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+ LG+G+GFANQSVPLYLSEMAP K RGA NIGFQ+ + IG+L+AN++NY T K
Sbjct: 137 MLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVTPK 196
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
++ G GWR+SL +A PA ++ VG F+P+TPNSI++R N +KAK MLQ++RGT +VE
Sbjct: 197 LQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNK-EKAKEMLQKIRGTMEVEH 255
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E N+L A +K + HP+ I+Q +YRPQL IPFFQQ+TGIN+I YAPVL +T+
Sbjct: 256 EFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKTI 315
Query: 181 KXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
V+TG + + TI+S+ VDK GR+ LFL GG QM V+Q+ +GS++ +
Sbjct: 316 -GFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWK 374
Query: 241 LGDHG-GFSEGY-AYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVC 298
G +G G G A +IL L+C+Y AGF++SWGPL WLVPSEI PLEIRSAGQS+ V+V
Sbjct: 375 FGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVN 434
Query: 299 LVFIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHW 358
+ F FF Q FL MLCH K V++MT F++ LPETK VPIE+M KVW++H
Sbjct: 435 MFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEMGKVWKEHR 494
Query: 359 FWKKYVGEVD 368
+W KY D
Sbjct: 495 YWGKYSNNDD 504
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 190/368 (51%), Positives = 256/368 (69%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG+G+GFANQS P+YLSEMAP K RGA NIGFQ+ + IG+L ANL+NYGT K
Sbjct: 137 MLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSK 196
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+ GWR+SL +AA PA ++ +G+ +P+TPNS+++R + ++AK+ML+++RG +V+
Sbjct: 197 M-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKN-EEAKQMLKKIRGADNVDH 254
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
E DLI A +K + +P+K I++ KYRP L+ IPFFQQ+TGIN+I YAPVL +TL
Sbjct: 255 EFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTL 314
Query: 181 KXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
V+TG + + T +S+ VD+ GR++LFL GGIQMF+ Q+++GS + A
Sbjct: 315 -GFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGAR 373
Query: 241 LGDHG-G-FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVC 298
G G G + A IL +CVY AGF++SWGPL WLVPSEI PLEIR AGQ+I V+V
Sbjct: 374 FGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVN 433
Query: 299 LVFIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHW 358
+ F F Q FL MLCH K V +MT F++ LPETK VPIE+M +VW+QHW
Sbjct: 434 MFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHW 493
Query: 359 FWKKYVGE 366
FWKKY+ E
Sbjct: 494 FWKKYIPE 501
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 183/362 (50%), Positives = 257/362 (70%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
ML+ GR++LG+GIGF NQ+VPLYLSE+AP RG N+ FQ+ IG+ +AN++NYGTQ+
Sbjct: 138 MLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQ 197
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+K WGWR+SL +AA PA ++T+G F+PETPNS+++R ++ +R+L ++RGT +V A
Sbjct: 198 LKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLT-ERGRRVLVKLRGTENVNA 255
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
EL D++ AS ++ +I HPF+ I+Q+++RPQLVMAI +P FQ +TGIN I YAPVL +T+
Sbjct: 256 ELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTM 315
Query: 181 KXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
+TG + + T IS+ LVD+LGR+ L + GGIQM + QVI+ I+ +
Sbjct: 316 -GFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVK 374
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
GD+ S+GY+ ++++ +C++ F +SWGPL W +PSEIFPLE RSAGQSITVAV L+
Sbjct: 375 FGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLL 434
Query: 301 FIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFW 360
F F AQ FL +LC FK WV VMT F++ LPETK VPIE+M +W +HWFW
Sbjct: 435 FTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFW 494
Query: 361 KK 362
KK
Sbjct: 495 KK 496
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| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 189/367 (51%), Positives = 252/367 (68%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG+G+GFANQS P+YLSEMAP K RGA NIGFQ+ + IG+L ANL+NYGT +
Sbjct: 137 MLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQ 196
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+ GWR+SL +AA PA I+ +G+ +P+TPNS+++R Q A+ MLQ++RG +V+
Sbjct: 197 MAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQ-AREMLQKIRGADNVDE 254
Query: 121 ELNDLIRASSISKTINHPFKKIIQR-KYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT 179
E DL A +K +++P+K I Q+ KYRP LV IPFFQQ+TGIN+I YAPVL +T
Sbjct: 255 EFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKT 314
Query: 180 LKXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239
L V+TG + V T++S+ VD+ GR+ILFL GGIQM VSQ+++G+++
Sbjct: 315 L-GFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGM 373
Query: 240 ELGDHGG--FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV 297
+ G G + A IL +C+Y AGF++SWGPL WLVPSEI PLEIR AGQ+I V+V
Sbjct: 374 KFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSV 433
Query: 298 CLVFIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQMDKVWRQH 357
+ F F Q FL MLCH K V VMT F++ LPETK VPIE+M +VW+QH
Sbjct: 434 NMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQH 493
Query: 358 WFWKKYV 364
FWK+Y+
Sbjct: 494 PFWKRYM 500
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| TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 171/370 (46%), Positives = 250/370 (67%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+LLG G+GF NQ+ P+YLSE+APP+ RGAFNIGF +++GV++ANL+NYGT
Sbjct: 135 MLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNIGFSCFISMGVVAANLINYGTDS 194
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGT---AD 117
+ GW RISL +AA PA+I+TVG LF+ +TP+S++ R + A L ++RG AD
Sbjct: 195 HRNGW--RISLGLAAVPAAIMTVGCLFISDTPSSLLARGKHDE-AHTSLLKLRGVENIAD 251
Query: 118 VEAELNDLIRASSISKTINHPF--KKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPV 175
VE EL +L+R+S ++ K I+QR+YRP LV+A++IP FQQ+TGI + YAPV
Sbjct: 252 VETELAELVRSSQLAIEARAELFMKTILQRRYRPHLVVAVVIPCFQQLTGITVNAFYAPV 311
Query: 176 LLRTLKXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235
L R++ ++ G + ++S +++D+ GR+ LF+ GGI M + Q+ +
Sbjct: 312 LFRSVGFGSGPALIATFIL-GFVNLGSLLLSTMVIDRFGRRFLFIAGGILMLLCQIAVAV 370
Query: 236 IMAAELG--DHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSI 293
++A +G G +GYA ++VL+C+Y+AGF +SWGPL+WLVPSEIFPL+IR AGQS+
Sbjct: 371 LLAVTVGATGDGEMKKGYAVTVVVLLCIYAAGFGWSWGPLSWLVPSEIFPLKIRPAGQSL 430
Query: 294 TVAVCLVFIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQMDKV 353
+VAV F +QTFLA LC FK W+ MT F+ +FLPETK +P++ M +V
Sbjct: 431 SVAVNFAATFALSQTFLATLCDFKYGAFLFYGGWIFTMTIFVIMFLPETKGIPVDSMYQV 490
Query: 354 WRQHWFWKKY 363
W +HW+W+++
Sbjct: 491 WEKHWYWQRF 500
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| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 170/370 (45%), Positives = 239/370 (64%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GR+ LGIGIGF NQ+VPLYLSEMAP K RG N FQ+ IG+L ANL+NY T++
Sbjct: 138 MLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKTEQ 197
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
I WGWR+SL +A PA ++ +G L +PETPNS++++ +KAK +L +VRGT ++EA
Sbjct: 198 IHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGK-LEKAKAVLIKVRGTNNIEA 255
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVM-AILIPFFQQVTGINIIGLYAPVLLRT 179
E DL+ AS ++ + +PF+ ++ R+ RPQLV+ AI +P FQQ+TG+N I YAPV+ ++
Sbjct: 256 EFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQS 315
Query: 180 LKXXXXXXXXXXXVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239
L + + V I+SM DK GR+ L L ++MF V++G +A
Sbjct: 316 LGFGGSASLISSTITNAAL-VVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLAL 374
Query: 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL 299
+ G+ + +++VL+C++ + SWGP+ WLVPSE+FPLE RSAGQS+ V V L
Sbjct: 375 KFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNL 434
Query: 300 VFIFFTAQTFLAMLCHFKAXXXXXXXXWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWF 359
F AQ FL LCH K ++ M +F++ LPETK VPIE++ +WRQHW
Sbjct: 435 FFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEVYLLWRQHWL 494
Query: 360 WKKYVGEVDE 369
WKKYV +VDE
Sbjct: 495 WKKYVEDVDE 504
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L7R8 | STP3_ARATH | No assigned EC number | 0.6341 | 0.9811 | 0.7081 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.7324 | 0.9946 | 0.7235 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | HT4 | SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00002307001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa) | • | 0.481 | |||||||
 | VvSUC11 | SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa) | • | 0.480 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 371 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 9e-79 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-71 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 5e-48 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-14 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 9e-11 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-08 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 6e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-06 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 6e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-04 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 9e-79
Identities = 114/356 (32%), Positives = 196/356 (55%), Gaps = 11/356 (3%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GRV++G+G+G + VP+Y+SE+AP K RGA +Q+ + G+L A ++ G K
Sbjct: 103 MLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNK 162
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
GWRI L + PA +L +G LF+PE+P ++ + ++A+ +L ++RG +DV+
Sbjct: 163 YSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKL-EEARAVLAKLRGVSDVDQ 221
Query: 121 ELNDLIRASSISKTINHPFKK--IIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLR 178
E+ + + S + R +L+M +++ FQQ+TGIN I Y+P +
Sbjct: 222 EIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFE 281
Query: 179 TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238
TL LS+S L ++ G + V T I++ LVD+ GR+ L L+G M + +++G
Sbjct: 282 TLGLSDSL---LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLG---V 335
Query: 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVC 298
A LG S+G + +V + ++ A F+ WGP+ W++ SE+FPL +R +I A
Sbjct: 336 ALLGVAK--SKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAAN 393
Query: 299 LVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVW 354
+ F F + +F F G +++ F+ F+PETK +E++D+++
Sbjct: 394 WLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 1e-71
Identities = 120/358 (33%), Positives = 194/358 (54%), Gaps = 13/358 (3%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
MLI GRVLLGIG+G A+ VP+YLSE+AP RGA +Q+ + G+L A G
Sbjct: 129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS 188
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+ GWRI L + PA +L +G F+PE+P ++ + ++A++ L R+RGT+ +
Sbjct: 189 LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGK-GRVEEARKSLARLRGTSGEDK 247
Query: 121 ELNDLIRASSISKTINHPFKKI-------IQRKYRPQLVMAILIPFFQQVTGINIIGLYA 173
EL D + I ++I + R+ R +L + +++ +FQQ TGIN I Y+
Sbjct: 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYS 307
Query: 174 PVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVII 233
P + +S + L+S +V G + T +++ LVD+ GR+ L L+G M + ++
Sbjct: 308 PTIFENAGVSTDHAFLVSIIV-GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVL 366
Query: 234 GSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSI 293
G + A+ + + + +V + ++ A F+ WGP+ W++ SEIFPL +R G SI
Sbjct: 367 GILGASFVTGSS---KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISI 423
Query: 294 TVAVCLVFIFFTAQTFLAMLCHFKAG-IFFFFGGWVIVMTTFMHLFLPETKNVPIEQM 350
VA + F F ML G +F FFGG ++ F++ FLPETK +E++
Sbjct: 424 AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 5e-48
Identities = 107/380 (28%), Positives = 183/380 (48%), Gaps = 53/380 (13%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRG---AFNIGFQVCLAIGVLSANLLNYG 57
+ R++ GIG+G A+ P+Y++E+AP RG +FN Q + G L +NY
Sbjct: 122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFN---QFAIIFGQLVVYFVNYF 178
Query: 58 TQKIKGG----W----GWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRML 109
I W GWR A A PA + + F+PETP ++ R ++A+ +L
Sbjct: 179 ---IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ-EQAEGIL 234
Query: 110 QRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQL-------VMAILIPFFQQ 162
+++ G L + I+ S ++ L V+ +++ FQQ
Sbjct: 235 RKIMGNTLATQALQE-IKHSL----------DHGRKTGGKLLMFGVGVIVIGVMLSVFQQ 283
Query: 163 VTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVG 222
GIN++ YAP + +TL S +LL + ++ G I T+++++ VDK GRK L ++G
Sbjct: 284 FVGINVVLYYAPEIFKTLGASTDIALLQT-IIVGVINLTFTVLAIMTVDKFGRKPLQIIG 342
Query: 223 GIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIF 282
+ M + +G+ +++ + L+ + Y A F+ SWGP+ W++ SEIF
Sbjct: 343 ALGMAIGMFSLGTAF---------YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF 393
Query: 283 PLEIRSAGQSITVAVCLVFIFFTAQTFLAM------LCHFKAGI-FFFFGGWVIVMTTFM 335
P IR +I VA + +F + TF M + HF G ++ +G ++ FM
Sbjct: 394 PNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 453
Query: 336 HLFLPETKNVPIEQMDKVWR 355
F+PETK +E+M+ +W
Sbjct: 454 WKFVPETKGKTLEEMEALWE 473
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Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 73/360 (20%), Positives = 147/360 (40%), Gaps = 49/360 (13%)
Query: 1 MLIFGRVLLGIGI-GFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQ 59
L+F R+L+G+GI G Q+V L E P K R QV ++G++ L+ Y
Sbjct: 183 FLVF-RLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP 240
Query: 60 KIKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVE 119
WR + P + + + F+PE+P +I + ++A ++LQR+
Sbjct: 241 ------DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRI------- 286
Query: 120 AELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIG------LYA 173
A++N + K + K + + P ++ T ++ Y
Sbjct: 287 AKING--KKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYY 344
Query: 174 PVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRK----ILFLVGGIQMFVS 229
++L L ++ L ++G + +I+++L+D+LGR+ L+ G+ + +
Sbjct: 345 GLVLDLGNLG--GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLL 402
Query: 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSA 289
+ +L L + G + ++ + +L +E++P +R+
Sbjct: 403 LFVP---------------VDLYFLRTALAVLGKFGITSAFQ-MVYLYTAELYPTVVRNL 446
Query: 290 GQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQ 349
G + + V + FL L + G + ++ + LFLPETK VP+ +
Sbjct: 447 GVGVCSTMARVGSIISP--FLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 9e-11
Identities = 64/303 (21%), Positives = 112/303 (36%), Gaps = 50/303 (16%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
+L+ R++ G +G LYL+E APP RG + QV +G+L A L
Sbjct: 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157
Query: 61 IKGG-----WGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGT 115
+ G WGWRI ++A I + ETP + +K +
Sbjct: 158 LLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP-VFEKAQEKHKKKRG-------- 208
Query: 116 ADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPV 175
P + + K+R ++ + + T +I Y P
Sbjct: 209 ----------------------PIAETL-TKHRKPFLLGLGLVIATTTT-FYLITTYLPT 244
Query: 176 LLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234
L TL LS +++LL+ + + + L D++GR+ + ++ + + V +
Sbjct: 245 YLTQTLGLSANSALLVLMLSLILFFITIPLSGA-LSDRIGRRPVLIIFTVLAALLAVPLL 303
Query: 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSIT 294
+ G L LV + GP+ +P E+FP E+R G S+
Sbjct: 304 MALLD---------SGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLA 353
Query: 295 VAV 297
+
Sbjct: 354 YNL 356
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 37/304 (12%)
Query: 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI 61
L+ R L G+G+G ++ +SE AP + RG IG L
Sbjct: 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL------- 160
Query: 62 KGGW-----GWRISLAMAA-APASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGT 115
GW GWR + AP +L + F+PE+ + ++ + P+ +R++ +
Sbjct: 161 -AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR--PETVRRIVNAIAPQ 217
Query: 116 ADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPV 175
EA + L + T FK + Q K V+ L+ F V G+ + + P
Sbjct: 218 MQAEA-QSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPK 275
Query: 176 LLRTL--KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVII 233
L+ L LS +A+ G IG+ II L D+LG ++ L+ +++
Sbjct: 276 LMVELGFSLSLAATGGALFNFGGVIGS---IIFGWLADRLGPRVTALL---------LLL 323
Query: 234 GSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSI 293
G++ A +G L + + G S + +A +P IR+ G
Sbjct: 324 GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMA-----LFYPTAIRATGVGW 378
Query: 294 TVAV 297
+ +
Sbjct: 379 AIGI 382
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[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 88/411 (21%), Positives = 144/411 (35%), Gaps = 87/411 (21%)
Query: 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANL-------- 53
L F R LG+GIG + SE A K RGA G+L+ +
Sbjct: 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAG 177
Query: 54 ----LNY--------GTQKIKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSND 101
L G+ + WRI + A PA + L +PETP + D
Sbjct: 178 FKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKD 237
Query: 102 PQKAKRMLQRVRGTADVEAELNDLIRASS--ISKTINHP----------FKKIIQRKYRP 149
++A +D+ A L I A + K F + ++
Sbjct: 238 VEQA---------ASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGK 288
Query: 150 QLVMAILIPFFQQVT--GINIIGLYAPVLLRTLKLSESAS--LLLSAVVTGGIGTVLTII 205
L+ F + G+N L V+L + S A+ + +G ++ +
Sbjct: 289 HLLGTAGSWFLLDIAFYGVN---LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIAL 345
Query: 206 ---------SMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLIL 256
++ LVD +GRK + L+G + V ++G L HG
Sbjct: 346 AGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG-FAYNHLSTHG----------- 393
Query: 257 VLVCVYSAGFSYSWGPLA--WLVPSEIFPLEIRSAGQSITVA------VCLVFIFFTAQT 308
L A F ++GP A ++VP E+FP RS I+ A + F F
Sbjct: 394 FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453
Query: 309 FLAMLCHFKAGIFF-----FFGGWVI--VMTTFMHLFLPETKNVPIEQMDK 352
+ GI+ F ++ ++ T + +PETK +E++
Sbjct: 454 HGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLL---IPETKGKSLEELSG 501
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 15/193 (7%)
Query: 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMI 208
+L++ + + FF G + Y P+ L+ + +A L + G G + ++ +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 209 LVDKLGRK-ILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFS 267
L D+LGR+ +L L+G + + +++ L+ +L+ + GF+
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLAL-----------APSLALLLVALLLLGFGLGFA 282
Query: 268 YSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGW 327
+ SE+ P E R + + +L G F
Sbjct: 283 FPALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAA 339
Query: 328 VIVMTTFMHLFLP 340
+ ++ + L LP
Sbjct: 340 LALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
+L+ GR LLG+G G + ++E PPK RG F +G L LL +
Sbjct: 89 LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMP 89
GWR + A +L + LF+
Sbjct: 149 S---LGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 63/329 (19%), Positives = 103/329 (31%), Gaps = 29/329 (8%)
Query: 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI 61
L RVLLG + L ++ P R F +G + L I
Sbjct: 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL-I 143
Query: 62 KGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAE 121
W W + I V L P PQKAK + T + +
Sbjct: 144 HFSWQWAFIIEGV--LGIIWGVLWLKFIPDP---------PQKAKWL------TEEEKYI 186
Query: 122 LNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLK 181
+ + A K + P K I+ + + V + + F G+ + P L +
Sbjct: 187 VVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQER 246
Query: 182 LSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241
A + G +G + I+ L D L R+ LV + II ++ + L
Sbjct: 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKT----AIIAGLVLSLL 302
Query: 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVF 301
Y L LV + F G + W + S+ P I + ++ +
Sbjct: 303 M-FATNYVNIPYAALALVAL--GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLG 359
Query: 302 IFFTAQTFLAMLCHFKAGIFFFFGGWVIV 330
A+ A F G ++V
Sbjct: 360 GIVGPIVIGAI----AATTGSFAGALMVV 384
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 51/297 (17%), Positives = 100/297 (33%), Gaps = 46/297 (15%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
+L+ RVL G+G G + +++ PP+ RG +G LL
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL--- 143
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
+ +GWR + + A A + V A + P +R ++A L
Sbjct: 144 LASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPL----------- 192
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
+ V+ +L+ + Y P+ L
Sbjct: 193 --------------------VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL 232
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
LS + LL + G +G + ++ L D+LGR+ L+ + + ++ + + + E
Sbjct: 233 GLSALLAGLLLGL-AGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE 291
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV 297
+ +LV + + G + P + S++ P E R +
Sbjct: 292 ----------SSLWLLVALLLLGFGAGLVF-PALNALVSDLAPKEERGTASGLYNTA 337
|
Length = 346 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQ---------VCLAIGVLSA 51
+++ GR+L G G V +YL+E+A P +G F +Q +G L
Sbjct: 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG-FYTSWQSASQQVAVVFAALLGYLLN 177
Query: 52 NLLNYGTQKIKGGWGWRI 69
L + WGWRI
Sbjct: 178 QWL---SPAQMAEWGWRI 192
|
Length = 434 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.96 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.96 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.95 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.94 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.94 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.94 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.94 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.94 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.93 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.93 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.93 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.92 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.92 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.92 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.92 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.92 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.91 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.91 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.91 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.91 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.91 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.9 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.9 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.9 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.9 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.9 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.9 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.89 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.88 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.88 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.88 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.87 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.87 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.87 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.86 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.85 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.85 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.85 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.84 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.84 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.84 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.84 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.84 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.83 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.82 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.82 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.81 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.79 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.76 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.75 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.75 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.74 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.74 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.72 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.72 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.71 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.71 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.71 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.71 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.69 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.69 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.69 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.68 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.68 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.67 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.66 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.66 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.65 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.65 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.65 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.65 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.63 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.63 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.62 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.61 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.61 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.6 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.6 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.6 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.59 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.59 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.59 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.59 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.59 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.58 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.58 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.57 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.57 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.57 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.57 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.57 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.56 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.56 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.55 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.55 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.55 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.54 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.54 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.53 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.53 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.53 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.52 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.52 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.52 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.52 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.52 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.51 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.51 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.51 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.5 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.5 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.5 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.5 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.49 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.49 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.49 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.49 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.49 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.49 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.48 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.48 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.47 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.46 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.46 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.45 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.45 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.44 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.44 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.44 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.43 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.42 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.42 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.42 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.41 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.38 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.37 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.37 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.36 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.36 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.36 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.35 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.34 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.34 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.33 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.32 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.29 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.29 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.29 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.28 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.28 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.27 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.26 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.26 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.25 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.23 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.22 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.22 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.21 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.21 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.2 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.19 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.17 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.16 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.13 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.12 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.11 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.1 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.09 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.04 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.03 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.99 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.98 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.96 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.93 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.93 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.89 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.86 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.78 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.75 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.75 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.74 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.69 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.69 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.67 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.66 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.65 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.62 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.6 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.56 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.55 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.53 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.46 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.36 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.25 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.23 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.23 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.21 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.18 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.16 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.04 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.88 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.87 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.8 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.76 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.76 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.72 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.72 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.56 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.55 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.52 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.48 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.44 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.34 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.33 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.32 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 97.29 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.26 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.12 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.11 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.91 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.81 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.7 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.69 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.59 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.41 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.33 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.25 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.2 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.16 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.14 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.03 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.91 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 95.73 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.7 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.45 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 95.34 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 95.13 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 94.8 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.72 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 94.44 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 94.32 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 94.04 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 93.55 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.52 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 92.38 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 85.65 | |
| PF05297 | 381 | Herpes_LMP1: Herpesvirus latent membrane protein 1 | 85.33 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 82.38 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=294.63 Aligned_cols=350 Identities=26% Similarity=0.480 Sum_probs=301.3
Q ss_pred CchhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCC-CcchHHHHhhhHHHHH
Q 017485 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKG-GWGWRISLAMAAAPAS 79 (371)
Q Consensus 1 ~l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~Wr~~f~~~~~~~~ 79 (371)
+++++|++.|+..|......+.|+.|..|++.||....+.+.+..+|.+++..++. .+..+ +..|++.+.+..++++
T Consensus 118 ~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l--~~ilGt~~~W~~l~~~~~i~~~ 195 (485)
T KOG0569|consen 118 MLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL--PSLLGTEDLWPYLLAFPLIPAL 195 (485)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc--HHhcCCCcchHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999987763 23332 3469999999999999
Q ss_pred HHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhc---ccccccchhhhhhhc-cchhHHHHHH
Q 017485 80 ILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASS---ISKTINHPFKKIIQR-KYRPQLVMAI 155 (371)
Q Consensus 80 ~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (371)
+..+...++||||||+..++++.+||++.++.+++.++.+++.+++.++.+ .+++++.++++++++ ..+++..+.+
T Consensus 196 ~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~ 275 (485)
T KOG0569|consen 196 LQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGI 275 (485)
T ss_pred HHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHH
Confidence 999999999999999999555599999999999999866655554433322 223356788899876 4666777788
Q ss_pred HHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
.+....++.+.+...+|...++++.|++..++. +.+...++..++.++++.++.||.|||++++.+..++.+..+++..
T Consensus 276 ~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~-~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~ 354 (485)
T KOG0569|consen 276 VVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ-YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSI 354 (485)
T ss_pred HHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999 8999999999999999999999999999999999999888887776
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
......... ....+..+...+++...++.+.+|+++.+.+|++|++.|+.++++..+..++..++....+..+.+.
T Consensus 355 ~~~l~~~~~----~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~ 430 (485)
T KOG0569|consen 355 ALFLSNSFG----SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV 430 (485)
T ss_pred HHHHHHHhh----hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 644321110 1223445677888889999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhcC
Q 017485 316 FKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQH 357 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (371)
.|...++.+.+.+.+..+.++.++||||+|+..|+.+..+++
T Consensus 431 ~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 431 IGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 998888888999999999999999999999999998888776
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=277.37 Aligned_cols=339 Identities=20% Similarity=0.252 Sum_probs=230.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhccc--------------------
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI-------------------- 61 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------------- 61 (371)
++++|+++|++.|+..+....+++|++|+++|++.+++.+....+|.++++.++..+...
T Consensus 118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (502)
T TIGR00887 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVP 197 (502)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 568999999999999999999999999999999999999999999999999887654321
Q ss_pred CCCcchHHHHhhhHHHHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhh
Q 017485 62 KGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKK 141 (371)
Q Consensus 62 ~~~~~Wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (371)
..+++||++|.+.++++++..+..+++||||+|+..|+++.+++++.+++.++.+..++ .++..+.+++++..+.++++
T Consensus 198 ~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 276 (502)
T TIGR00887 198 AVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSD 276 (502)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHH
Confidence 11257999999999998888888889999999999988854556666666654321111 01111000111111235677
Q ss_pred hhhccchh---HHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHH-----------HHHHHHHHHHHHHHHHHHH
Q 017485 142 IIQRKYRP---QLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASL-----------LLSAVVTGGIGTVLTIISM 207 (371)
Q Consensus 142 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~g 207 (371)
++++..++ +..+...+.++.....++....+.|.++++.|++..... ........++.+++.++++
T Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 356 (502)
T TIGR00887 277 FFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV 356 (502)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76532211 223333334444445566777889999988888654221 0123344556777889999
Q ss_pred HHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhh
Q 017485 208 ILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIR 287 (371)
Q Consensus 208 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 287 (371)
+++||+|||+.++.+..+..++..++...... ...........+.....+.+..+..+.+.+|++|++.|
T Consensus 357 ~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R 426 (502)
T TIGR00887 357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH----------LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYR 426 (502)
T ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh----------cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHH
Confidence 99999999999988877777666555543210 00111112222222233444556777888999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhc----------cc-chhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 017485 288 SAGQSITVAVCLVFIFFTAQTFLAMLCHF----------KA-GIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDK 352 (371)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (371)
+++.|+.+..++++++++|.+.+.+.+.. +. ..++++++++.+. .+.++++|||+++++||+++
T Consensus 427 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~i~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 427 STAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLG-ILFTLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHH-HHHheEeccCCCCCHHhhhC
Confidence 99999999999999999999999988743 22 2344454444444 34556789999999877643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=260.07 Aligned_cols=343 Identities=29% Similarity=0.555 Sum_probs=241.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhccc-----CCCcchHHHHhhhHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI-----KGGWGWRISLAMAAA 76 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~Wr~~f~~~~~ 76 (371)
++++|+++|++.|+..+...++++|++|+++|++++++.+.+..+|.++++.++..+... .+.+|||+.|++.++
T Consensus 123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~ 202 (479)
T PRK10077 123 FVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAI 202 (479)
T ss_pred HHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999998887655421 124689999999988
Q ss_pred HHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 77 PASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 77 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
+.++..+..+++||+|+|+..+++ .+++++..++..+..+.+...++..+....++. ..+..+. ...........
T Consensus 203 ~~~~~~~~~~~l~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~ 277 (479)
T PRK10077 203 PALLFLMLLYFVPETPRYLMSRGK-QEQAEGILRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVM 277 (479)
T ss_pred HHHHHHHHHHcCCCCcHHHHHcCC-HHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHH
Confidence 888777777889999999877766 777776666665443332222222111110000 0011111 11111122223
Q ss_pred HHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
...+.+..+++...++.|.+.++.|.+..... ......++..+++.+++++++||+|||+.++.+.++..++.+.+...
T Consensus 278 ~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~ 356 (479)
T PRK10077 278 LSVFQQFVGINVVLYYAPEIFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 356 (479)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHH
Confidence 33444455566677888999999998877666 67777888999999999999999999999999988888877666543
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAML--- 313 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--- 313 (371)
.. .............++..+++..+.+..+.+++|.+|++.|++++|+.+..++++..+++.+.+.+.
T Consensus 357 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~ 427 (479)
T PRK10077 357 FY---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNS 427 (479)
T ss_pred Hh---------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 21 001122233344445555555556777788899999999999999999999999999987776554
Q ss_pred ---hhcccc-hhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhcCcc
Q 017485 314 ---CHFKAG-IFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWF 359 (371)
Q Consensus 314 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (371)
+..++. .+..+...+.+..++.+++.||+|+++.+|.++..++..+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 477 (479)
T PRK10077 428 WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETK 477 (479)
T ss_pred chhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhccc
Confidence 344433 4444455555555566667899999999888887766544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=259.28 Aligned_cols=353 Identities=34% Similarity=0.648 Sum_probs=289.8
Q ss_pred CchhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 1 ~l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+++++|+++|+|.|+.....+.|++|..|++.||...+..+....+|..++..++....+. . ++||..+.+..+++++
T Consensus 144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~ 221 (513)
T KOG0254|consen 144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVI 221 (513)
T ss_pred HHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999997777766554 1 5799999999999999
Q ss_pred HHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCc--cchHHHHHHHHHHhccc---ccccchhhhhhhccchhHHHHHH
Q 017485 81 LTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGT--ADVEAELNDLIRASSIS---KTINHPFKKIIQRKYRPQLVMAI 155 (371)
Q Consensus 81 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
..+..+++||||+|+.++++ .+++++.++++++. .+.+.+.++.......+ .+.+..+.+++++..+++..+.+
T Consensus 222 ~~~~~~~~pesp~~L~~~g~-~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 300 (513)
T KOG0254|consen 222 LALGMLFLPESPRWLIEKGR-LEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGL 300 (513)
T ss_pred HHHHHHhCCCChHHHHHcCC-hHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHH
Confidence 88888889999999999888 99999999999983 34444444443111111 11122466666666777888889
Q ss_pred HHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
.+..+.++.+++...+|.+.+++..|.+... . ......++..+++..++.++.||+|||+.++.+...+.++.++++.
T Consensus 301 ~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~-~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~ 378 (513)
T KOG0254|consen 301 LLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-F-LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAV 378 (513)
T ss_pred HHHHHHHHhCCceEEeehHHHHHhcCCCCch-H-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999988665 3 6677888889999999999999999999999999999999988887
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
.......... ......+..+...+++...++.++.++++.+.+|.+|.+.|+.+.++.....++.+++....+....+.
T Consensus 379 ~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~ 457 (513)
T KOG0254|consen 379 VGVFALYYPN-SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA 457 (513)
T ss_pred HHHHhccCCC-cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6543322110 122446777888888888899999999999999999999999999999999999999988887777777
Q ss_pred cc-cchhhHHHHHHHHHHH-HHHHhccCCCCCCHHHHHHHHhcCcc
Q 017485 316 FK-AGIFFFFGGWVIVMTT-FMHLFLPETKNVPIEQMDKVWRQHWF 359 (371)
Q Consensus 316 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (371)
.+ ...+..+.+++.+... ..++++||||+++.||+++.+.+...
T Consensus 458 ~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 458 LGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred ccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence 65 6677777777777777 68888999999999999988776544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=259.65 Aligned_cols=328 Identities=18% Similarity=0.243 Sum_probs=236.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC----------CCcchHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK----------GGWGWRISL 71 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~Wr~~f 71 (371)
++++|+++|++.|+..+...+++.|++|+++|++.++++..++.+|.++++.++..+.... ...+||+.+
T Consensus 258 llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~ 337 (742)
T TIGR01299 258 FLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFV 337 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHH
Confidence 5789999999999999999999999999999999999999999999999998776554321 124799999
Q ss_pred hhhHHHHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccch-----HHHH--HHHHHHhcc------cccc---
Q 017485 72 AMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADV-----EAEL--NDLIRASSI------SKTI--- 135 (371)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~------~~~~--- 135 (371)
++.++++++.++..+++||||+|+..+++ .+++.+.+++++..+.. .... +..+..... ++..
T Consensus 338 ~i~~lp~ll~ll~~~~lPESPrwL~~~gr-~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (742)
T TIGR01299 338 IVCAFPCVFAIGALTFMPESPRFFLENGK-HDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTW 416 (742)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHCCC-HHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccch
Confidence 99999888887778889999999999988 89999999988765421 1110 010000000 0000
Q ss_pred ---------------cchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHh--------------------
Q 017485 136 ---------------NHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL-------------------- 180 (371)
Q Consensus 136 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 180 (371)
..+++++++++.+++ .+.+++.+++...+++++..|+|.++++.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~-tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (742)
T TIGR01299 417 YQRCFVRALSEGGGIWGNFLRCFNPEVREI-TIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHF 495 (742)
T ss_pred hhcchhhhhhhhhhHHHHHHHHcCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhcc
Confidence 013455665544444 45566677888889999999999886432
Q ss_pred ----------------------CC-----C----------------c---------------------------------
Q 017485 181 ----------------------KL-----S----------------E--------------------------------- 184 (371)
Q Consensus 181 ----------------------g~-----~----------------~--------------------------------- 184 (371)
|+ + .
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (742)
T TIGR01299 496 SFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCS 575 (742)
T ss_pred ccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhcc
Confidence 00 0 0
Q ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 017485 185 ------------------SASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGG 246 (371)
Q Consensus 185 ------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (371)
....+....+..++.+++.+++|+++||+|||+++.++.++.+++.+++.+.
T Consensus 576 ~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~---------- 645 (742)
T TIGR01299 576 FLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG---------- 645 (742)
T ss_pred ccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH----------
Confidence 0011244667778999999999999999999999998888888877766653
Q ss_pred CchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHH
Q 017485 247 FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGG 326 (371)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (371)
.+....+++.++.+++.+.. .+..+.+++|++|++.|++++|+.++.+.+|++++|.+.+.+.+.. ...++++++
T Consensus 646 ---~s~~~ll~~~~l~g~~~~~~-~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a 720 (742)
T TIGR01299 646 ---NSESAMIALLCLFGGLSIAA-WNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFAS 720 (742)
T ss_pred ---ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 22223333334444443333 3455678899999999999999999999999999999998887654 334444444
Q ss_pred HHHHHHHHHHHhccCCCCCC
Q 017485 327 WVIVMTTFMHLFLPETKNVP 346 (371)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~ 346 (371)
++.+++.++..++|||+++.
T Consensus 721 ~~lll~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 721 AALACGGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHhCCCCcccc
Confidence 44455555566779998875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=292.30 Aligned_cols=345 Identities=32% Similarity=0.645 Sum_probs=269.8
Q ss_pred CchhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 1 ~l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+++++|+++|++.|+..+....++.|..|+++|++..++.+.++.+|.+++..++..+.+..++++||+.+.+..+++++
T Consensus 104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~ 183 (451)
T PF00083_consen 104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL 183 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36789999999999999999999999999999999999999999999999998877665444346799999999999988
Q ss_pred HHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccc-hhHHHHHHHHHH
Q 017485 81 LTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKY-RPQLVMAILIPF 159 (371)
Q Consensus 81 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 159 (371)
..+..+++||||+|+..|+| .+|+++.++++++.+..+++.++..++.++.++.+.+++++++++. +++.+..+.+..
T Consensus 184 ~~~~~~~~pESP~wL~~~~~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 262 (451)
T PF00083_consen 184 VLLLRFFLPESPRWLLSKGR-DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQF 262 (451)
T ss_pred ccccccccccccceeccccc-ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccc
Confidence 88888899999999999988 7799999998777665555555544443333333356777776543 455566666666
Q ss_pred HHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 160 FQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
+....+.+....+.|.+.++.+.+.. . .......+...++.+++.++.||+|||+.++.+..++.++.+.++.....
T Consensus 263 ~~~~~g~~~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~ 339 (451)
T PF00083_consen 263 FQQFSGINFIFYYSPSIFENAGISNS--F-LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL 339 (451)
T ss_pred cccccccccccccccccccccccccc--c-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66667777788888888888887777 2 44556667788888888899999999999999888887777766511100
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK-A 318 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 318 (371)
. .+ .+.......+....+....++.++.+..+.+.+|++|++.|+++.++....+++++++++.+...+.+..+ .
T Consensus 340 ~-~~---~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 415 (451)
T PF00083_consen 340 G-VS---SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGW 415 (451)
T ss_pred c-cc---cccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00 00011333444455555666667788888999999999999999999999999999999999888887777 7
Q ss_pred chhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Q 017485 319 GIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKV 353 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (371)
..+.++++++.+..++.++++||||+++++|++++
T Consensus 416 ~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 416 GVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 77788888888888888899999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=243.22 Aligned_cols=309 Identities=17% Similarity=0.205 Sum_probs=203.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhccc-----CCCcchHHHHhhhHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI-----KGGWGWRISLAMAAA 76 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~Wr~~f~~~~~ 76 (371)
++++|+++|++.|+.++.+.+++.|++|+++||++.++...+..+|.++++.+...+... ..++|||+.|++.++
T Consensus 121 l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~ 200 (490)
T PRK10642 121 LLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALP 200 (490)
T ss_pred HHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999889988888765444321 124789999999887
Q ss_pred HHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 77 PASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 77 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
++++..++..++||+|+|...+++ .++.. . +...++.+.++++++++ .++.... ..
T Consensus 201 ~~l~~~~~~~~~~esp~~~~~~~~-~~~~~-------~--------------~~~~~~~~~~~~~~~~~-~~~~~~~-~~ 256 (490)
T PRK10642 201 LGIIGLYLRHALEETPAFQQHVDK-LEQGD-------R--------------EGLQDGPKVSFKEIATK-HWRSLLT-CI 256 (490)
T ss_pred HHHHHHHHHHcCCCChhHHHHHHh-hhhhc-------c--------------ccccccccCCHHHHHHH-hHHHHHH-HH
Confidence 777666566789999987543222 10000 0 00001113345566543 2222222 22
Q ss_pred HHHHHHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
...+.....++.+..|.|.+++ .+|++..+.. .......++.+++.++.|+++||+|||+.+..+.++..+....+..
T Consensus 257 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 335 (490)
T PRK10642 257 GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGV-LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFI 335 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 2333344567778889999984 5788877766 6777778889999999999999999999887776544433322221
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
.. ...+.........+.+++.+.... ....+..|.+|++.|+++.|+.+..+.+++.++|.+.+.+.+.
T Consensus 336 ~~----------~~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~ 404 (490)
T PRK10642 336 LI----------NSNVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES 404 (490)
T ss_pred HH----------hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 001122222333333333222222 2235557899999999999988777888889999999988876
Q ss_pred cc-cchhhHHHHHHHHHHHHHHHhccCCCCCC
Q 017485 316 FK-AGIFFFFGGWVIVMTTFMHLFLPETKNVP 346 (371)
Q Consensus 316 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (371)
.+ +.....+..+..+++++..++.||++++.
T Consensus 405 ~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 405 TQNLMMPAYYLMVVAVIGLITGVTMKETANRP 436 (490)
T ss_pred hCCchHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 54 33333333444444555556678876543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=234.51 Aligned_cols=339 Identities=34% Similarity=0.646 Sum_probs=235.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHh---hhhcccCCCcchHHHHhhhHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLN---YGTQKIKGGWGWRISLAMAAAPA 78 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~Wr~~f~~~~~~~ 78 (371)
++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++ ....+ ..+||+.|++.++..
T Consensus 130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~---~~~w~~~f~~~~~~~ 206 (481)
T TIGR00879 130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN---TLGWRIPLGLQLIPA 206 (481)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC---CccHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999998 44333 357999999977777
Q ss_pred HHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHH----HHHHh-cccccccchhhhhhhcc--chhHH
Q 017485 79 SILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELND----LIRAS-SISKTINHPFKKIIQRK--YRPQL 151 (371)
Q Consensus 79 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~--~~~~~ 151 (371)
++..+..+++||+|++...+++ .+++++..++..+.++.+.+..+ ..... .+.+..+..+.+.++.. ..++.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (481)
T TIGR00879 207 GLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRL 285 (481)
T ss_pred HHHHHHHhcCCCChHHHHHcCC-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHH
Confidence 7776667889999988776655 45555544444332221111111 00000 00001111233333211 23555
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
++...+..+...........+.|.+.++.|++..+.+ .......++.+++.++.++++||++||+.+..+.++..++.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 286 FLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF-LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6656666666666667778888999999999987777 788888899999999999999999999999888777766666
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
.+........... +.......+....++..+++.+..+....+..|.+|++.|+++.++.+...++++++++.+.+.
T Consensus 365 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~ 441 (481)
T TIGR00879 365 VLGILGASFVTGS---SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT 441 (481)
T ss_pred HHHHHhhcccCCc---ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553211100000 0001233334444455555556667777788999999999999999999999999999999999
Q ss_pred HHhhcccch-hhHHHHHHHHHHHHHHHhccCCCCCCHH
Q 017485 312 MLCHFKAGI-FFFFGGWVIVMTTFMHLFLPETKNVPIE 348 (371)
Q Consensus 312 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (371)
+.++.++.. ++..++++.+.+++..++.||+++++.+
T Consensus 442 ~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 442 MLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 988877544 4444445555555556667888776543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=240.17 Aligned_cols=318 Identities=20% Similarity=0.311 Sum_probs=217.7
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.++..+...+++.|++|+++|++..++...+..+|.++++.+++.+.+ ||+.|++.+++.++.
T Consensus 183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------wr~~~~~~~i~~~~~ 256 (505)
T TIGR00898 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD------WRWLQLAVSLPTFLF 256 (505)
T ss_pred HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999876653 999999999988887
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchH--HHHHHHH-HHhcccccccchhhhhhhccchhHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVE--AELNDLI-RASSISKTINHPFKKIIQRKYRPQLVMAILIP 158 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (371)
.+..+++||||+|+..+++ .+++.+.+++..+.+..+ .+..+.. +....+++.+.+++++++++..+...+.....
T Consensus 257 ~~~~~~~~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (505)
T TIGR00898 257 FLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMML 335 (505)
T ss_pred HHHHHhcCCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHH
Confidence 7777889999999998888 788877777665433211 1111111 11111111234667777665554444444444
Q ss_pred HHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
++.....++....+ ....+.+.. ......++..+++.++.+++.||+|||+.+.++.++.+++.+.+...
T Consensus 336 ~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-- 405 (505)
T TIGR00898 336 WFTTAFSYYGLVLD----LGNLGGNIY----LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV-- 405 (505)
T ss_pred HHHHHHHHHHHhcc----ccccCCChH----HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc--
Confidence 44333333333322 233444422 34456677888999999999999999999998887777776655443
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKA 318 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
+....+.......+..++....+ +..+.+.+|.+|++.|++++|+.+..+.++++++|.+.+ +.+ .+.
T Consensus 406 ---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~ 473 (505)
T TIGR00898 406 ---------PVDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KWL 473 (505)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHH
Confidence 11112223333333333333222 345677899999999999999999999999999999988 433 333
Q ss_pred chhhHHHHHHHHHHHHHHHhccCCCCCCHH
Q 017485 319 GIFFFFGGWVIVMTTFMHLFLPETKNVPIE 348 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (371)
...+.+.+...+.+.+..+++||+++++++
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~lpet~~~~l~ 503 (505)
T TIGR00898 474 FLPLVLFGGLALLAGILTLFLPETKGVPLP 503 (505)
T ss_pred hhHHHHHHHHHHHHHHHHHcCcCCCCCCCC
Confidence 333333334444445556678999987754
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-30 Score=203.30 Aligned_cols=323 Identities=19% Similarity=0.224 Sum_probs=231.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|.+.|+|.|+ .|...++-.|.-|..+|+..+-.. ..+.+|.+....++..+... .||||..+....+..+.
T Consensus 169 L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~---~gwr~~l~~~~~pl~~~ 243 (528)
T KOG0253|consen 169 LCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN---FGWRYLLFTSSTPLMFA 243 (528)
T ss_pred hhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHH
Confidence 67899999999999 899999999999999999988888 99999999999998877764 46999998888888888
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchH-----------HHHHHHHH-----Hhcccccccchhhhhhhc
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVE-----------AELNDLIR-----ASSISKTINHPFKKIIQR 145 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 145 (371)
+.+.+++|||||++..+++ +++|.+.++++++.|..+ ++.+++.. ..+..++......+++.+
T Consensus 244 a~f~~w~~ESpRf~~~~G~-~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp 322 (528)
T KOG0253|consen 244 ARFLVWVYESPRFYLAKGD-DYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSP 322 (528)
T ss_pred HHHHhhcccCcchhhhcCC-hHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcCh
Confidence 8888999999999999999 889988888887655221 11111110 111223334556677766
Q ss_pred cchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhC--------------------CCchhHHHHHHHHHHHHHHHHHHH
Q 017485 146 KYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLK--------------------LSESASLLLSAVVTGGIGTVLTII 205 (371)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 205 (371)
+.++..+. .+..++.+-..+|+.......+++.-. .+. ...+.-.....+..++|.++
T Consensus 323 ~lrkttll-lw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~-~~dYrdllitslaefPGlLI 400 (528)
T KOG0253|consen 323 KLRKTTLL-LWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSV-AKDYRDLLITSLAEFPGLLI 400 (528)
T ss_pred HHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccc-hhHHHHHHHHHHhhCCchhH
Confidence 66555544 555566555566666555555543211 111 12335667788899999999
Q ss_pred HHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh
Q 017485 206 SMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE 285 (371)
Q Consensus 206 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 285 (371)
.+++.||+|||+.+..+.++++++.+.+.... ......+..+..-++...++ ...+.|..|++|+.
T Consensus 401 t~~iverlGRKkTMal~l~~f~iflfll~~c~-------------~rn~~tvllf~arafisg~f-qvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 401 TGVIVERLGRKKTMALSLILFGIFLFLLTTCK-------------TRNAYTVLLFTARAFISGAF-QVAYVYTPEVYPTA 466 (528)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-------------CcchhHHHHHHHHHHHhchh-eEEEEecCcccchh
Confidence 99999999999999999988888877765541 12222333344444444444 36689999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccCCCCCCH
Q 017485 286 IRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPI 347 (371)
Q Consensus 286 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (371)
.|+++.|.+...+.+|+++.|.+. ...+..-....+++.+++++.++...++--|||+|..
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999999999999999999999987 3333333444555555555555555555558998863
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=216.14 Aligned_cols=299 Identities=16% Similarity=0.203 Sum_probs=195.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-----CCcchHHHHhhhHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK-----GGWGWRISLAMAAA 76 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~Wr~~f~~~~~ 76 (371)
++++|+++|++.|+.++....++.|++|+++|++..+..+.+..+|.+++..+...+.... .++|||++|++.++
T Consensus 128 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~ 207 (438)
T PRK09952 128 LVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIV 207 (438)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999887766554321 13689999999988
Q ss_pred HHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhh-hhhccchhHHHHHH
Q 017485 77 PASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKK-IIQRKYRPQLVMAI 155 (371)
Q Consensus 77 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 155 (371)
+.++........||+|+|...+++ .++ .+.+.+..+ +++++ +.+...
T Consensus 208 ~~l~~~~l~~~~~es~~~~~~~~~-~~~----------------------------~~~~~~~~~~l~~~~---~~~~~~ 255 (438)
T PRK09952 208 LVLIALWVRNGMEESAEFEQQQHE-QAA----------------------------AKKRIPVIEALLRHP---GAFLKI 255 (438)
T ss_pred HHHHHHHHHHhCCCChhHHHHHhh-ccc----------------------------ccccCCHHHHHHHch---HHHHHH
Confidence 876655556678999876433211 000 000111112 22221 122222
Q ss_pred HHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
....++.....+....|.|.+. +++|.+..... ......++..+++.++.|+++||+|||+.+..+.++..++...+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~-~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~ 334 (438)
T PRK09952 256 IALRLCELLTMYIVTAFALNYSTQNLGLPRELFL-NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 2233334445666777888887 45787776544 445556677788899999999999999988877655544333222
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHH-HHHHHHHHHHHHHH
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL-VFIFFTAQTFLAML 313 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~ 313 (371)
.... ..+..........+.+++.+.. .+..+.+.+|.+|++.|+++.++.+..+. +++.++|.+.+.+.
T Consensus 335 ~~~~---------~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~ 404 (438)
T PRK09952 335 MALE---------AQSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALV 404 (438)
T ss_pred HHHH---------cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2110 0011222222333333333322 23345677999999999999999776654 88999999999998
Q ss_pred hhcc--cchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 314 CHFK--AGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 314 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
+..+ +...+.+.+++.+++.+..+..+|++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 405 TYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 7543 44555555555666666666666643
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=213.30 Aligned_cols=294 Identities=20% Similarity=0.226 Sum_probs=186.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-----CCcchHHHHhhhHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK-----GGWGWRISLAMAAA 76 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~Wr~~f~~~~~ 76 (371)
+++.|+++|++.|+.++...+++.|++|+++|+++.++.+.+...|.++++.+...+.... ..+|||++|++.++
T Consensus 127 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~ 206 (432)
T PRK10406 127 LLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAV 206 (432)
T ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 6789999999999999999999999999999999999999888888888887765544321 13689999999888
Q ss_pred HHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 77 PASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 77 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
++++..++...+||+|++..++ ++++.+++++++++ +.+....
T Consensus 207 ~~ll~~~~~~~~~e~~~~~~~~----------------------------------~~~~~~~~~l~~~~---~~~~~~~ 249 (432)
T PRK10406 207 LAVVALWLRRQLDETSQQETRA----------------------------------LKEAGSLKGLWRNR---RAFIMVL 249 (432)
T ss_pred HHHHHHHHHhcCCCCchHHHhh----------------------------------hcccccHHHHHhhH---HHHHHHH
Confidence 8877766666788887521000 00012345555422 1222222
Q ss_pred HHHHHHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
...+.....++.+..|.|.+++ ++|.+..+.+ .......+...++.++.|+++||++||+.+....++..+....+..
T Consensus 250 ~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~-~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 328 (432)
T PRK10406 250 GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVAS-GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILS 328 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 2223334456777889999884 5788887777 6666666777888889999999999999877665544333222211
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV-FIFFTAQTFLAMLC 314 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (371)
... ...+....+....+...+.+. ..+..+.+.+|.+|++.|++++|+.+..+++ .+...|.+.+.+ +
T Consensus 329 ~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~ 397 (432)
T PRK10406 329 ALQ---------NVSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-K 397 (432)
T ss_pred HHH---------cCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-H
Confidence 110 001112111112111111111 1223446678999999999999999988775 344566666644 5
Q ss_pred hcc-cchhhHHHHHHHHHHHHHHHhccCCCCC
Q 017485 315 HFK-AGIFFFFGGWVIVMTTFMHLFLPETKNV 345 (371)
Q Consensus 315 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (371)
..+ +...+++.++..+++.+..+++ ++++|
T Consensus 398 ~~g~~~~~~~~~~~~~~i~~~~~~~l-~~~~~ 428 (432)
T PRK10406 398 SIGMETAFFWYVTLMAVVAFLVSLML-HRKGK 428 (432)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHh-hhccc
Confidence 445 4444444444445544444443 33444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=202.64 Aligned_cols=300 Identities=14% Similarity=0.075 Sum_probs=210.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHh--hhhcccCCCcchHHHHhhhHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLN--YGTQKIKGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~Wr~~f~~~~~~~~ 79 (371)
+.+.-++.|...|..+|++...+..|+|++|||+..++++.+.++|..+.+++. +.+... .+||..|++.+++++
T Consensus 120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~---~~w~~~f~~pgiiai 196 (448)
T COG2271 120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH---GGWRAAFYFPGIIAI 196 (448)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc---cchhHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999988 555543 369999999999988
Q ss_pred HHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhh-hccchhHHHHHHHH
Q 017485 80 ILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKII-QRKYRPQLVMAILI 157 (371)
Q Consensus 80 ~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 157 (371)
+..+. ++..+|+|+- .+ ....++.+++..+.. .++++++..+.++++ +...+++.+|.+.+
T Consensus 197 ival~~~~~~rd~Pqs---~G------LP~ie~~~~d~~e~~--------~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~ 259 (448)
T COG2271 197 IVALILLFLLRDRPQS---EG------LPPIEEYRGDPLEIY--------EEEKENEGLTAWQIFVKYVLKNKLIWLLAL 259 (448)
T ss_pred HHHHHHHHHhCCCccc---cC------CCCHHHhhcCchhhh--------hhhccCCCccHHHHHHHHHHcChHHHHHHH
Confidence 88777 5667888841 11 111111111110000 111111113444444 45567788888888
Q ss_pred HHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHH
Q 017485 158 PFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL--GRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~ 234 (371)
..+.....-+.+..|.|.|+ +..|++..++. ...+.+-.++++|++++|+++||+ |||.+..+.+.+....++...
T Consensus 260 a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~-~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~ 338 (448)
T COG2271 260 ANVFVYVVRYGINDWGPLYLSEVKGFSLVKAN-WAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLY 338 (448)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 88888888899999999999 66899999999 899999999999999999999996 677665544333333322222
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV-FIFFTAQTFLAML 313 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~ 313 (371)
... +..+.+...+++.+.++... +..-+.-....|..|.+..|++.|+...++++ |...+....+.+.
T Consensus 339 w~~----------~~~~~~l~~~~l~~iGf~Iy-GPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~ 407 (448)
T COG2271 339 WLA----------PNGSYLLDAILLFIIGFLIY-GPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA 407 (448)
T ss_pred HcC----------CCccHHHHHHHHHHHHHHHh-hHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE
Confidence 221 11223333443333333322 22234445668999999999999999999999 8888888888888
Q ss_pred hhcccchhhHHHHHHHHHHH
Q 017485 314 CHFKAGIFFFFGGWVIVMTT 333 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~ 333 (371)
|.++|...++...+..+++.
T Consensus 408 d~~gW~g~Fi~~~~~a~l~~ 427 (448)
T COG2271 408 DTWGWDGGFIVLSIAALLAI 427 (448)
T ss_pred ecCCCcchHHHHHHHHHHHH
Confidence 88887655554444444333
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-30 Score=211.30 Aligned_cols=339 Identities=22% Similarity=0.257 Sum_probs=240.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhccc----CC--------CcchHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI----KG--------GWGWRI 69 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~--------~~~Wr~ 69 (371)
|.+.|++.|+|.|+.+|.+.++.+|....++||...+.+.+....|.+.|.+++..+... .+ +.-||.
T Consensus 147 L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl 226 (538)
T KOG0252|consen 147 LCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRI 226 (538)
T ss_pred HHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHH
Confidence 678999999999999999999999999999999999998888888888887776655321 11 135999
Q ss_pred HHhhhHHHHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhh---hhhhcc
Q 017485 70 SLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFK---KIIQRK 146 (371)
Q Consensus 70 ~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 146 (371)
.|.+..++++.++...+.+|||++|.....++.+.+.+..++.-. . +.++..+.....+..+.++. ..+...
T Consensus 227 ~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~---~--~~~~~~~~~~~~~~~~~~~~~F~~~f~~~ 301 (538)
T KOG0252|consen 227 IFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLS---V--DIEAESTAESDVPPPSNSFGLFSRLFLRW 301 (538)
T ss_pred HHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccc---c--ccchhhccccCCCCcccccchHHHHHHHH
Confidence 999999999999999999999999875554444433311111100 1 11111111111111122222 222222
Q ss_pred chhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHH--------HHHHHHHHHHHHHHHHHHHHHhhhCchHH
Q 017485 147 YRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLL--------LSAVVTGGIGTVLTIISMILVDKLGRKIL 218 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 218 (371)
.-+.++.....++..-..+|....+...+++..|+.+....+ ....+...+.++|..+...++|++|||+.
T Consensus 302 -hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i 380 (538)
T KOG0252|consen 302 -HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI 380 (538)
T ss_pred -HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence 224566777888888888999999999999988887655442 22333444555677788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHH
Q 017485 219 FLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVC 298 (371)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 298 (371)
.+.++.++.+..+.++.... +..+....++...+..++...+.+.....+.+|.+|++.|+++.|+..+.+
T Consensus 381 q~~GF~~~~i~~~~~~~~y~---------~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~G 451 (538)
T KOG0252|consen 381 QLMGFFIMTIFFFVIAGPYN---------QLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASG 451 (538)
T ss_pred HHhhHHHHHHHHHHHcCCcc---------cccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhc
Confidence 99999999888777766421 012333445555666666677777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-----hcccchhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHh
Q 017485 299 LVFIFFTAQTFLAMLC-----HFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWR 355 (371)
Q Consensus 299 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (371)
-.|++++...+.++.+ ..+....++..+.+.....+..+++||++++++++++.+.+
T Consensus 452 K~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 452 KAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEEE 513 (538)
T ss_pred cchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChhh
Confidence 9999999999999988 44544444444445555666667788999999998865443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=205.09 Aligned_cols=302 Identities=20% Similarity=0.293 Sum_probs=183.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-----CCcchHHHHhhhHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK-----GGWGWRISLAMAAA 76 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~Wr~~f~~~~~ 76 (371)
++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.++..+.... +.+|||++|++..+
T Consensus 120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 4789999999999999999999999999999999999999888888888887776653211 24689999998655
Q ss_pred HHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 77 PASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 77 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
...+..+.....||++++...+++ .+.+..+++..++ ++......
T Consensus 200 ~~~~~~~~~~~~~e~~~~~~~~~~--------------------------------~~~~~~~~~~~~~---~~~~~~~~ 244 (434)
T PRK15075 200 IVPFIFLIRRSLEETEEFLARKHR--------------------------------PSMREIFRSLAAN---WRIVLAGM 244 (434)
T ss_pred HHHHHHHHHHhcCCCHHHHHhhhc--------------------------------cccccHHHHHHHh---HHHHHHHH
Confidence 433332223334444321110000 0000111111111 12222222
Q ss_pred HHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
+..+.....++....|.|.++++ +|++..+.. +......++.+++.++.|+++||+|||+.+..+..+..+.......
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSL-LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 33333445567788899999865 799888877 7778888899999999999999999999887665443322111111
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV-FIFFTAQTFLAMLC 314 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (371)
... . . ...........+.+.+.+. ..+..+.+..|.+|++.|+++.++.+..+.. ++.++|.+.+.+.+
T Consensus 324 ~~~----~----~-~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 324 WLV----A----A-PSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHH----c----C-CchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 100 0 0 1111111212222222222 2233345668999999999999997666654 58889999999999
Q ss_pred hcccc-hhhHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 017485 315 HFKAG-IFFFFGGWVIVMTTFMHLFLPETKNVPIEQ 349 (371)
Q Consensus 315 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
..++. ....+.....++..+..+..++.++.+++.
T Consensus 394 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK15075 394 VTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQA 429 (434)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 87742 112122222233334444555555544443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=191.70 Aligned_cols=282 Identities=19% Similarity=0.224 Sum_probs=204.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|++.|+..|..++...++..+..|+++|++++++...+.+++.++|.+++.++.+. +|||..|++.+.++++.
T Consensus 104 Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~---~GWR~~F~~ia~l~ll~ 180 (394)
T COG2814 104 LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL---FGWRATFLAIAVLALLA 180 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH---hhHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999986 45999999999999888
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. +..+| |+. +.+ +.+.+.++.++-..+++ ++...+..+
T Consensus 181 ~~~~~~~lP--~~~---~~~---------------------------------~~~~~~~~~~~~l~~p~-v~~~l~~t~ 221 (394)
T COG2814 181 LLLLWKLLP--PSE---ISG---------------------------------SLPGPLRTLLRLLRRPG-VLLGLLATF 221 (394)
T ss_pred HHHHHHhCC--Ccc---CCC---------------------------------CCCcchhHHHHHhcCch-HHHHHHHHH
Confidence 877 66688 210 000 00122222222122222 333333344
Q ss_pred HHhhchhhhHhhH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYA-PVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
....+.+....|. |.+.+..|++.+... +....++++.++|+.++|++.|| +.|+.+.....+..+....+.+..
T Consensus 222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs-~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-- 297 (394)
T COG2814 222 LFMTGHFALYTYIRPFLESVAGFSVSAVS-LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-- 297 (394)
T ss_pred HHHcchhhhHHhHHHHHHHccCCCHhHHH-HHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc--
Confidence 4444555555555 555567889999988 99999999999999999999999 888888877777777666655542
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
.+.+.......+.++......... ....++ .-++.+..+.++.....++|..++..+.|.+.++.++.
T Consensus 298 ----------~~~~~~~~~~~~wg~a~~~~~~~~-~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~ 365 (394)
T COG2814 298 ----------ASPALALALLFLWGFAFSPALQGL-QTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYA 365 (394)
T ss_pred ----------chHHHHHHHHHHHHHHhhhhhhHH-HHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 333444444444444433222222 233344 23588899999999999999999999999999998877
Q ss_pred hhhHHHHHHHHHHHHHHHhccC
Q 017485 320 IFFFFGGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~ 341 (371)
.....++...+.++...+...+
T Consensus 366 ~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 366 ATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7777776666666666555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=203.91 Aligned_cols=278 Identities=17% Similarity=0.176 Sum_probs=185.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+..++....++.|++|+++|++++++...+..+|.++++.+...+.+. .+||+.|++..+..++.
T Consensus 109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~---~~w~~~f~i~~~~~~~~ 185 (426)
T PRK12307 109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA---YGWRAAFFVGLLPVLLV 185 (426)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc---CCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999888776654 46999999866554443
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.......||++++...+.+ + .++.+ ....+..+.++++.++++..+..... ....+.
T Consensus 186 ~~~~~~~p~~~~~~~~~~~---~----------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 242 (426)
T PRK12307 186 IYIRARAPESKEWEEAKLS---G----------KGKHS---------QSAWSVFSLSMKGLFNRAQFPLTLCV-FIVLFS 242 (426)
T ss_pred HHHHHHCCCChHHHHhhhh---c----------ccccc---------ccchhhhhHHHHHHHhhchHHHHHHH-HHHHHH
Confidence 3333345776643221100 0 00000 00000011234555554433322222 222222
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
.....+.+..+.|.++++.|.+....+ .......++.+++.++.+++.||++||+.+..+.++..+..+.+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~----- 316 (426)
T PRK12307 243 IFGANWPIFGLLPTYLAGEGFDTGVVS-NLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI----- 316 (426)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333444566788999888898888877 77788889999999999999999999998887776655544333222
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhh-hccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAG-FSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
+ ...... ....+++.+ ...+..+....++.|.+|++.|++++|+.+....+++.++|.+.+.+.+..+..
T Consensus 317 ------~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 317 ------P-QDNYLL-LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred ------c-cccHHH-HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 0 111111 111222221 111222333456689999999999999999999999999999999999888743
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=203.28 Aligned_cols=288 Identities=16% Similarity=0.142 Sum_probs=196.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+. .+||+.|++.++..++.
T Consensus 106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 182 (406)
T PRK11551 106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD---AAWRHIFYVGGVGPLLL 182 (406)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cCHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999998776653 46999999988766555
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. ..++||+|++..++++ .++. +...+..+++...++ ........+
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~-~~~~------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~ 230 (406)
T PRK11551 183 VPLLMRWLPESRAFAQAAGA-GKQR------------------------------APVLRALFGEGRATA-TLLLWISYF 230 (406)
T ss_pred HHHHHHhCCCChhHHhccCc-chhh------------------------------hhhHHHHhhhhhhhH-HHHHHHHHH
Confidence 544 5568998864322111 0000 000011111111111 112222333
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
......+....+.|.++++.|.+..+.+ .......++.+++.++.|++.||+|||+.+..+.+...++...+...
T Consensus 231 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---- 305 (406)
T PRK11551 231 FTLIVLYFLLNWLPSLLVGQGLSRSQAG-LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA---- 305 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3334455667788999988999988888 78888889999999999999999999998877655554444333221
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc-c
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKA-G 319 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (371)
.+.+...+...+.+++.. +..+....+..|.+|++.|+++.|+.+....++..++|.+.|.+.++.+. .
T Consensus 306 ---------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~ 375 (406)
T PRK11551 306 ---------PSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTV 375 (406)
T ss_pred ---------CcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchH
Confidence 122223333333333332 23344556778999999999999999999999999999999999887653 3
Q ss_pred hhhHHHHHHHHHHHHHHHhc
Q 017485 320 IFFFFGGWVIVMTTFMHLFL 339 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~ 339 (371)
..+.....+.+.+.+..+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 376 GVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444443333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=201.82 Aligned_cols=297 Identities=14% Similarity=0.154 Sum_probs=189.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhccc---CCCcchHHHHhhhHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI---KGGWGWRISLAMAAAPA 78 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~Wr~~f~~~~~~~ 78 (371)
+++.|+++|++.++..+....++.|++|+++|++++++++.+.++|.++++.+++.+.+. .+..|||+.|++.++++
T Consensus 99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~ 178 (412)
T TIGR02332 99 LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPS 178 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999998877532 12358999999998887
Q ss_pred HHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHH
Q 017485 79 SILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILI 157 (371)
Q Consensus 79 ~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (371)
++..++ ++++||+|+.. +.-++++.+...++.+......++.+ +..++.+...++.+++.. .+.++...+
T Consensus 179 l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 249 (412)
T TIGR02332 179 VILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQPE------GAFAHAAMPQRSMLREIF-TPAIMLYTL 249 (412)
T ss_pred HHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccccc------cccccccccHHHHHHHhc-ChHHHHHHH
Confidence 766554 66789998521 10001111111111111000000000 000000111111122212 233555566
Q ss_pred HHHHHhhchhhhHhhHHHHHHHh--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHH-HHHHHHHHHHHHHH
Q 017485 158 PFFQQVTGINIIGLYAPVLLRTL--KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFL-VGGIQMFVSQVIIG 234 (371)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~ 234 (371)
.+++....++.+..|.|.+++++ +.+..+.+ .......++.+++.++.|+++||++||+... .......++ ..+.
T Consensus 250 ~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~-~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~-~~~~ 327 (412)
T TIGR02332 250 AYFCLTNTLSAINIWTPQILQSFNQGSSNIMIG-LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG-WLLA 327 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhH-HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH-HHHH
Confidence 66666677888899999999875 55666667 7788889999999999999999999877533 332222222 1111
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
.. . ...........+...+.... .+..+....|.+|++.|+++.|+.+..++++++++|.+.+.+.+
T Consensus 328 ~~-----------~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~ 394 (412)
T TIGR02332 328 SA-----------T-DHNLIQLLGIIMASMGSFSA-MAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD 394 (412)
T ss_pred Hh-----------c-CCHHHHHHHHHHHHHHhhhh-hhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence 11 0 11111121122222222111 23334555688999999999999999999999999999999998
Q ss_pred hcc-cchhh
Q 017485 315 HFK-AGIFF 322 (371)
Q Consensus 315 ~~~-~~~~~ 322 (371)
..+ +...+
T Consensus 395 ~~g~~~~~~ 403 (412)
T TIGR02332 395 ATGSFNSGL 403 (412)
T ss_pred cCCCCchhH
Confidence 875 54433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=205.10 Aligned_cols=308 Identities=12% Similarity=0.057 Sum_probs=192.7
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|++.|++.|..++...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+. +|||+.|++.+++.++.
T Consensus 114 l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 114 FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH---YGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999998877654 46999999988876655
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhh-ccchhHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQ-RKYRPQLVMAILIPF 159 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 159 (371)
.+. .+++||+|++...+.. .++.++ .+ +.. ++.++.+.+.++.++ ...+++.++.+.+..
T Consensus 191 ~~~~~~~~~~~p~~~~~~~~-~~~~~~----------~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (434)
T PRK11663 191 GLFLCWRLRDKPQAMGLPSV-GEWRHD----------AL----ELA---QQQEGAGLSRKEILTKYVLLNPYIWLLSFSY 252 (434)
T ss_pred HHHHHHHcCCCHhhcCCCCc-cccccc----------cc----ccc---hhccccCCChhhhHHHHHhcChHHHHHHHHH
Confidence 444 5567888764211110 000000 00 000 000001112233222 122233444444445
Q ss_pred HHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CchHHH-HHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL--GRKILF-LVGGIQMFVSQVIIGS 235 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~ 235 (371)
+......+.+..|.|.++ +++|++..+.+ .......++.+++.++.|+++||+ ++|+.. ....+...+....+..
T Consensus 253 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~ 331 (434)
T PRK11663 253 VLVYVVRAAINDWGNLYMSETLGVDLVTAN-SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL 331 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH
Confidence 544555667778899998 56899998888 788888899999999999999998 333332 2222222212111111
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
. +..+...........+++. .+.......+..|.+|++.|++++|+.+...++++.++|.+.+.+.++
T Consensus 332 ~-----------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~ 399 (434)
T PRK11663 332 M-----------PFASYVMQAACFFTIGFFV-FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI 399 (434)
T ss_pred c-----------ccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence 1 0011112212222222211 111112234557999999999999999999999999999999999998
Q ss_pred cccchhhHHHHHHHHH-HHHHHHhccCCC
Q 017485 316 FKAGIFFFFGGWVIVM-TTFMHLFLPETK 343 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 343 (371)
.++...+...+++.++ ++..+...++++
T Consensus 400 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 400 WHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8876555544444433 333433444333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=209.47 Aligned_cols=306 Identities=10% Similarity=-0.026 Sum_probs=195.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...|...+++.||+|+++||++++++..+.++|.++++.++..+.......+||..|.+.++++++.
T Consensus 125 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~ 204 (467)
T PRK09556 125 MIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALII 204 (467)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999988765544221125999999988887766
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhh-ccchhHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQ-RKYRPQLVMAILIPF 159 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 159 (371)
.+. +++.+++|+.. +. .++ ++. .++.. .++ + +. .++.+.+..+.++ ...+++.++...+..
T Consensus 205 ~i~~~~~~~~~p~~~---~~-~~~-~~~---~~~~~--~~~--~--~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (467)
T PRK09556 205 GFIGLRYGSDSPEEL---GW-GKA-EEI---FGEPI--SEE--D--KE---TESTDMTKWQIFVEYVLKNPVIWLLCFAN 267 (467)
T ss_pred HHHHHHhCCCChhhc---CC-CCh-hhc---ccCcc--chh--h--hc---cccccCcHHHHHHHHHHcChHHHHHHHHH
Confidence 655 44567776421 11 010 000 00000 000 0 00 0000111122111 123344456566666
Q ss_pred HHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
++....++.+..|.|.|+ +++|++..+.+ .......++.+++.+++|+++||++||+..........++...+....
T Consensus 268 ~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~- 345 (467)
T PRK09556 268 IFLYIVRIGIDNWSPVYAFQELGFSKEDAI-NTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH- 345 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh-
Confidence 666666677888999888 55899998888 777888889999999999999999999876655443333222211110
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHh---
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV-FIFFTAQTFLAMLC--- 314 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~--- 314 (371)
. .+.....+..++.+.+.. +..........|.+|++.|+++.|+.+..+++ +++++|.+.|.+.+
T Consensus 346 ---------~-~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~ 414 (467)
T PRK09556 346 ---------A-TSEYMYLASLFALGFLVF-GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTK 414 (467)
T ss_pred ---------c-CcHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccc
Confidence 0 122222233333332221 11111124456999999999999999999997 67999999999999
Q ss_pred ---------hcccchhhHHHHHHHHHHHHHHH
Q 017485 315 ---------HFKAGIFFFFGGWVIVMTTFMHL 337 (371)
Q Consensus 315 ---------~~~~~~~~~~~~~~~~~~~~~~~ 337 (371)
..+|...+.+..++.+++.+..+
T Consensus 415 ~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 415 NGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred cccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 34555444444444444444433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=196.67 Aligned_cols=273 Identities=10% Similarity=0.048 Sum_probs=178.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++..+.+. +|||+.|++.++++++.
T Consensus 82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~---~gWr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA---GGLQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHH
Confidence 57899999999986 566667779999999999999999999999999999999888764 56999999988887766
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. ++++||+|++. ++..+ .. +. ..++++++++ +.++...+..+
T Consensus 158 ~~~~~~~lp~~p~~~---~~~~~---------------~~---~~----------~~~~~~ll~~----~~~~~~~~~~~ 202 (368)
T TIGR00903 158 IILVLAALPALPFQA---AEGFG---------------FK---DA----------VKEFGALAGR----KDLWIIGAILG 202 (368)
T ss_pred HHHHHHHcCCCCCCC---CCCcc---------------hH---HH----------HHHHHHHHcC----hhHHHHHHHHH
Confidence 555 66789998641 11000 00 00 0123445443 33566666677
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCch---HHHHH-HHHHHHHHHHHHHHH
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRK---ILFLV-GGIQMFVSQVIIGSI 236 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr---~~~~~-~~~~~~~~~~~~~~~ 236 (371)
+....++.+..|+|.++++.|++.. .+ .......+.+.++ .++++||..|| +.... ...+..+....+...
T Consensus 203 ~~~~~~~~~~~wlp~~L~~~g~s~~-~~-~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~ 277 (368)
T TIGR00903 203 FGVALFDNLAIWLEAALRPAGLEDI-AG-DAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE 277 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChH-HH-HHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777888899999999988887754 44 4444444444444 57788887654 33222 222222222222111
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
.+....+....+.+++.. ...+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..
T Consensus 278 -------------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-- 341 (368)
T TIGR00903 278 -------------LNRLALFAFIGIAGLLML-PAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-- 341 (368)
T ss_pred -------------cccHHHHHHHHHHHHhhh-hhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--
Confidence 112222333333333322 2223455778999999999999999999999999999999887773
Q ss_pred c-cchhhHHHHHHHHHHHH
Q 017485 317 K-AGIFFFFGGWVIVMTTF 334 (371)
Q Consensus 317 ~-~~~~~~~~~~~~~~~~~ 334 (371)
+ ...+..+++...+..+.
T Consensus 342 ~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 342 SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4 23444444444443333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=198.33 Aligned_cols=314 Identities=14% Similarity=0.017 Sum_probs=186.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHH-HHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVL-SANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+++.|+++|++.+..++.....+.|++|+++|++++++++.+..+|.. .+++++..+... .+||+.|++.+++.++
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~ 199 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAIL 199 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHH
Confidence 467899999999998888888999999999999999999999998864 455543333222 3699999998887776
Q ss_pred HHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhh-ccchhHHHHHHHHH
Q 017485 81 LTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQ-RKYRPQLVMAILIP 158 (371)
Q Consensus 81 ~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 158 (371)
..++ .+++||+|+....+ + .++.++ +. +. +. +.+++.+.+.++.++ ...+++.++...+.
T Consensus 200 ~~~l~~~~~~~~~~~~~~~-~-~~~~~~-------~~--~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 261 (452)
T PRK11273 200 VALFAFAMMRDTPQSCGLP-P-IEEYKN-------DY--PD---DY----NEKHEQELTAKQIFMQYVLPNKLLWYIAIA 261 (452)
T ss_pred HHHHHHHHccCCHhhcCCC-C-hhhhhh-------cc--cc---cc----ccccCCCccHHHHHHHHHHcChHHHHHHHH
Confidence 5544 66788887532111 0 111000 00 00 00 000001112222221 12233445545455
Q ss_pred HHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CchHHHHH-HHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKL--GRKILFLV-GGIQMFVSQVIIG 234 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~-~~~~~~~~~~~~~ 234 (371)
.+......+....+.|.++++ .|++..+.+ .......++.+++.++.|+++||+ +||+...+ ...+..++...+.
T Consensus 262 ~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~ 340 (452)
T PRK11273 262 NVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 340 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH
Confidence 444445556778899999965 688888877 777788889999999999999999 45543222 1122222211111
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFF-TAQTFLAML 313 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~ 313 (371)
.. ...+.+.........+.... +.......+..|.+|++.|++++|+.+...++++.+ +|.+.+.+.
T Consensus 341 ~~-----------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~ 408 (452)
T PRK11273 341 LN-----------PAGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 408 (452)
T ss_pred Hh-----------cccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 10 00112222222222222211 111122234568999999999999999999998765 799999999
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 017485 314 CHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQ 349 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
|+.++...+..++.+.+++++........++|+.||
T Consensus 409 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 409 DFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 998876555444444444444444444334443333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-25 Score=197.71 Aligned_cols=327 Identities=15% Similarity=0.142 Sum_probs=223.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.++....+..++.|++++++|+.+..+ ......+..++++.++++.. +||+.+++..+++++.
T Consensus 174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~ 247 (521)
T KOG0255|consen 174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLF 247 (521)
T ss_pred HHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999 55555555566666555554 4999999999999988
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCcc----chHHHHHHH--HHHhc-ccccccchhhhhhhccchhHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTA----DVEAELNDL--IRASS-ISKTINHPFKKIIQRKYRPQLVMA 154 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
.+.+++.||||||+..+++ .+++.+.+++..+.+ +.++..+.. .+... ...+.+..+.++++.+..++..+.
T Consensus 248 ~~~~~l~~Es~rwl~~~g~-~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 326 (521)
T KOG0255|consen 248 LLLWFLPPESPRWLLSKGR-IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLY 326 (521)
T ss_pred HHHHHccCcChHHHHHcCc-hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHH
Confidence 8887777899999999999 899999888876533 111111111 11111 111223456777766543444444
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
....++.....+++... ....+|.+.. ......+.....+....+...|+.|||.....+..+..++.+..+
T Consensus 327 ~~~~~~~~~~~y~gl~~----~~~~lg~~~~----~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~ 398 (521)
T KOG0255|consen 327 LLFIWFVFSLVYYGLSL----NVSGLGGNIY----LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFG 398 (521)
T ss_pred HHHHHHHHhHHHHhhhh----hhhhcCchHH----HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 44444333333333222 2233443333 334444557888888889999999999999999999999988888
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
+... ....+...+...+..++.+.++... +.+.+|++|+..|+.+.+.......++++++|.+......
T Consensus 399 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 399 WLPD----------DLGGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred Hhhc----------cchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7631 1111234444444444445455544 7888999999999999999999999999999988654444
Q ss_pred hcccchhhH-HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHh
Q 017485 315 HFKAGIFFF-FGGWVIVMTTFMHLFLPETKNVPIEQMDKVWR 355 (371)
Q Consensus 315 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (371)
........ +.....+.+.+...++||++++.+.+..++.+
T Consensus 468 -~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 468 -MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred -hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 33222222 35555666666668999999988765544444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=198.65 Aligned_cols=298 Identities=11% Similarity=0.020 Sum_probs=206.7
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|+.|+++|+++.++...+..+|..+|+.+++.+.+. .+||+.|++.++..++.
T Consensus 113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~~~~~~~ 189 (417)
T PRK10489 113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAAAGTFIT 189 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence 457899999999988899999999999999999999999999999999999999887664 35999999888877776
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+..+.+||+++. +.+ .++. .++ .+..++..++++..+. ..+..+.
T Consensus 190 ~~~~~~l~~~~~~---~~~-~~~~----------------~~~----------~~~~~~~~~~~~~~~~----~~~~~~~ 235 (417)
T PRK10489 190 LLPLLRLPALPPP---PQP-REHP----------------LRS----------LLAGFRFLLASPVVGG----IALLGGL 235 (417)
T ss_pred HHHHHhCCCCCCC---Ccc-cccc----------------hHH----------HHHHHHHHHcChHHHH----HHHHHHH
Confidence 6666677776531 000 0000 000 0111222222222111 1111111
Q ss_pred HhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 162 QVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
.. .......+.|.+.++ +|.+....+ +......++.+++.++.+++.||.++++.+..+.++..++.+.+...
T Consensus 236 ~~-~~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---- 309 (417)
T PRK10489 236 LT-MASAVRVLYPALADEVWQMGAAQIG-LLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM---- 309 (417)
T ss_pred HH-HHHhHHHhhHHHHHhccCCChhHhH-HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc----
Confidence 11 123456678888876 898888888 77788889999999999999999877777777766665554443321
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc-c
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKA-G 319 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (371)
++.+...+...+.+.+.+. ..+....++.|..|++.|++++|+.+....++..+++.+.|.+.+..+. .
T Consensus 310 ---------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~ 379 (417)
T PRK10489 310 ---------PMWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVA 379 (417)
T ss_pred ---------chHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh
Confidence 2233333444444444332 2234446778999999999999999999999999999999999998885 4
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 017485 320 IFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDK 352 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (371)
.+...+++..+.+++.....+++|+++.+|.++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 380 SASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 445556566666677777788888877666544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=194.40 Aligned_cols=291 Identities=16% Similarity=0.100 Sum_probs=188.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.+++.+.+..+ .+||+.|++.+++.++.
T Consensus 103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999887765432 35999999887777666
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+....+||+|++...+++ .++.++..++..+..+. .++ ..++.....++. ...+++.+....+....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 249 (405)
T TIGR00891 182 LWLRKNIPEAEDWKEKHAG-KALVRTMVDILYGGEHR---IAN------IVMTLAAAMVQS--AGKRWPTFVYLVVLVLF 249 (405)
T ss_pred HHHHHhCCCChhHHHHhhh-hhhhhhHHHHHhccchh---hhh------hhhhhhHHhhhh--hhhhhHHHHHHHHHHHH
Confidence 6666778998765432222 11111111111110000 000 000000011111 11111212222222222
Q ss_pred HhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 162 QVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
..........+.|.++ ++.|.+..+.+ .......++.+++.++.+++.||++||+.+..+.....+........
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---- 324 (405)
T TIGR00891 250 ANLYSHPIQDLLPTYLKADLGLSPHTVA-NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI---- 324 (405)
T ss_pred HHHHHhhhhhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh----
Confidence 2233344556677777 56899988888 77888899999999999999999999998887765543322221111
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cc
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK-AG 319 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 319 (371)
. .+.+...+...+.+.+... ..+....++.|.+|++.|++++|+.+....++..++|.+.|.+.+..+ +.
T Consensus 325 -------~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~ 395 (405)
T TIGR00891 325 -------G-ANVAVLGLGLFFQQMLVQG-IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG 395 (405)
T ss_pred -------C-CchHHHHHHHHHHHHHHcc-chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 0 1222222322333333222 223444667899999999999999999999999999999999999887 44
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=189.22 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=185.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..+++++++.+.+. .|||+.|++.++++++.
T Consensus 100 l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~ 176 (390)
T PRK03545 100 LLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALIT 176 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999887654 46999999999887766
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. ..++||.|+ +++ ++ ..+.++.++++..+. .....+
T Consensus 177 ~~~~~~~~~~~~~----~~~--~~-------------------------------~~~~~~~~~~~~~~~----~~~~~~ 215 (390)
T PRK03545 177 LLLLIKLLPLLPS----EHS--GS-------------------------------LKSLPLLFRRPALVS----LYLLTV 215 (390)
T ss_pred HHHHHHhCCCCCC----CCc--ch-------------------------------HHHHHHHHhCcHHHH----HHHHHH
Confidence 555 445666542 000 00 001223333332221 111122
Q ss_pred HHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
......+....+.+.+++ ..|.+..+.+ .......++.+++.++.+++.||++||... .+..+..++...+....
T Consensus 216 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~-- 291 (390)
T PRK03545 216 VVVTAHFTAYSYIEPFVQQVAGLSENFAT-LLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA-- 291 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh--
Confidence 222233333455666654 4788888888 777888899999999999999999987654 33333333332222210
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
++.+...+...+.+.+.. ...+.......|..| +.|++++|+.+....+|..++|.+.|.+.++.++.
T Consensus 292 ----------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~ 359 (390)
T PRK03545 292 ----------NSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS 359 (390)
T ss_pred ----------chHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 223333444444444432 222333345567766 68899999999999999999999999999999876
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 017485 320 IFFFFGGWVIVMTTFMHLF 338 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~ 338 (371)
..+...+.+.+.+++....
T Consensus 360 ~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 360 SIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6665555555554444433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=194.23 Aligned_cols=305 Identities=17% Similarity=0.163 Sum_probs=195.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+...+....++.|++|+++|++.+++.+....+|.++++.+++.+.+. .+||+.|++.+++.++.
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999998877654 45999999998887776
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .++.||+|+.. +.. .++.++...+ ...++ .+..+.++..+...++.++ ++.++...+..+
T Consensus 162 ~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 225 (399)
T TIGR00893 162 GVLWLKFIPDPPQKA--KWL-TEEEKYIVVG--------GLLAE-QQGKGPSTPKKYQIKELLK----DRRVWGLALGQF 225 (399)
T ss_pred HHHhhheecCCCCcc--ccC-CHHHHhhcch--------hhccc-cccccccCCCccchHHHhc----CHHHHHHHHHHH
Confidence 665 44567665311 001 1111000000 00000 0000111111223333333 233444555555
Q ss_pred HHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHH-HHHHHHHHHHHHHHHH
Q 017485 161 QQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVG-GIQMFVSQVIIGSIMA 238 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~-~~~~~~~~~~~~~~~~ 238 (371)
........+..+.|.+++ ..|.+..+.+ .......++.+++.++.++++||++||+..... .....++.+.......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (399)
T TIGR00893 226 LVNIGLGFFLTWFPTYLVQERGLSILEAG-FMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF 304 (399)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcccHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 556666777888888884 5788888888 778888899999999999999999999622111 1111111111111110
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK- 317 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 317 (371)
.. + .....+.......+...+. +..+....+..|.+|++.|+++.|+.+....++..++|.+.+.+.+..+
T Consensus 305 ~~--~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~ 376 (399)
T TIGR00893 305 AT--N----YVNIPYAALALVALGFFGL--GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS 376 (399)
T ss_pred Hh--c----cchhHHHHHHHHHHHHhch--hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence 00 0 0012222222222222222 2456667888999999999999999999999999999999999999877
Q ss_pred cchhhHHHHHHHHHHHH
Q 017485 318 AGIFFFFGGWVIVMTTF 334 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~ 334 (371)
+...+.+.++..+.+.+
T Consensus 377 ~~~~~~~~~~~~~~~~~ 393 (399)
T TIGR00893 377 FAGALMVVAALALIGAL 393 (399)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 65555544444444333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=191.99 Aligned_cols=299 Identities=17% Similarity=0.202 Sum_probs=208.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|++||++.|..+|....+.+.|.|++||++..++..++..+|.+++.++++++.+. ..||+++|++.++.+++.
T Consensus 131 ~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~ 208 (466)
T KOG2532|consen 131 LLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIW 208 (466)
T ss_pred hHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999988875 367999999999999998
Q ss_pred HHhh-hcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhccc---ccccchhhhhhhccchhHHHHHHHH
Q 017485 82 TVGA-LFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSIS---KTINHPFKKIIQRKYRPQLVMAILI 157 (371)
Q Consensus 82 ~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (371)
.+++ ++..|+|.. ++... ++|.+.+.+...++ ++.+.|++++++++ .++...+
T Consensus 209 ~~~w~~~~~d~P~~----h~~is---------------~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~----~vwai~~ 265 (466)
T KOG2532|consen 209 FILWFLFYSDSPSK----HPNIS---------------EKELKYIEKGKSEAHVKKKPPVPYKAILTSP----PVWAIWI 265 (466)
T ss_pred HHHHHHHhcCCccc----CCCCC---------------HHHHHHHHhcccccccCCCCCCCHHHHHcCH----HHHHHHH
Confidence 8885 456777751 11011 11222222222211 11467888887654 4788888
Q ss_pred HHHHHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCch--------H-HHHHHHHHHH
Q 017485 158 PFFQQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRK--------I-LFLVGGIQMF 227 (371)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--------~-~~~~~~~~~~ 227 (371)
..++...+++.+..|+|.|++ -++++..+.+ +..++..+...+..+++|.++||..+| | .-.++....+
T Consensus 266 ~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G-~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~a 344 (466)
T KOG2532|consen 266 SAFGGNWGFYLLLTYLPTYLKEVLGFDVRETG-FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPA 344 (466)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHH
Confidence 899999999999999999995 4899999999 899999999999999999999998663 2 2233333333
Q ss_pred HHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHH
Q 017485 228 VSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
++++.+++. +..+.+..++++.+.....+...... +.-..|. .+++.+..+|+.+....+.++++|.
T Consensus 345 i~l~~l~~~-----------~~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~ 411 (466)
T KOG2532|consen 345 VFLLVLAFT-----------SDEHRLLAVILLTIAIGLSGFNISGF-YKNHQDI-APQHAGFVMGIINFVGALAGFIAPL 411 (466)
T ss_pred HHHHeeeec-----------CCCcchHHHHHHHHHHHHcccchhhh-Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332 11222233333333222222222111 1111232 4678899999999999999999999
Q ss_pred HHHHHHhhc---ccchhhHHHHHHHHHHHHHHHhc
Q 017485 308 TFLAMLCHF---KAGIFFFFGGWVIVMTTFMHLFL 339 (371)
Q Consensus 308 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 339 (371)
+.+.+..+. .|...+.+.+...+++.+.+.+.
T Consensus 412 ~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 412 LVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred heeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 999988422 35555554444444444443333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=196.40 Aligned_cols=306 Identities=16% Similarity=0.142 Sum_probs=192.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++++++++.+.+.. .+||+.|++.++++++.
T Consensus 134 l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~ 211 (465)
T TIGR00894 134 VVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAW 211 (465)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHH
Confidence 5679999999999999999999999999999999999999999999999999988876532 26999999999988777
Q ss_pred HHhh-hcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVGA-LFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+.+ .+.+|+|+. +++..++.++.. ++..+.++.+.+.+.++++.++ ++.++...+..+
T Consensus 212 ~~~~~~~~~~~p~~---~~~~~~~~~~~i-------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 271 (465)
T TIGR00894 212 SLLWFVFPADDPSI---HPCISKFEKKYI-------------NSSLQGQKGSTRQSLPIKAIPK----SLPVWAIWFAIF 271 (465)
T ss_pred HHHHHHHhcCCccc---CCCCCHHHHHHH-------------HhhcccccCCCCCCCCHHHHhc----CHHHHHHHHHHH
Confidence 6664 446677741 111011100000 0000000001111233444443 344666666777
Q ss_pred HHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHH---HHHHHHHHHH---HHH
Q 017485 161 QQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFL---VGGIQMFVSQ---VII 233 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~---~~~~~~~~~~---~~~ 233 (371)
+.....+.+..|+|.++ +.+|++..+.+ +......++.+++.+++|+++||.++|+... .......++. ...
T Consensus 272 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (465)
T TIGR00894 272 GHFWLYTILPTYLPTFISWVLRVSGKENG-LLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIF 350 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 77777888889999998 45899988888 7888888999999999999999986543211 0001111111 111
Q ss_pred HHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017485 234 GSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAML 313 (371)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (371)
.+... . ........+....+.+++.+.. .+.......|..| +.+|.+.++.+..+.+++.++|.+.+.+.
T Consensus 351 ~~~~~--~------~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~ 420 (465)
T TIGR00894 351 AYALP--Y------LSAAFYLTIIILTLANAVSSGP-LAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNIL 420 (465)
T ss_pred HHHHH--H------cCCchHHHHHHHHHHHHHhhhh-hhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 11100 0 0011222233333333332222 2233344456666 58999999999999999999999999887
Q ss_pred hhc--c-cchhhHHHHHHHHHHHHHHHhcc
Q 017485 314 CHF--K-AGIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 314 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
+.. + +...+.+.++..+++.+.....+
T Consensus 421 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 421 SQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 654 2 33334444434444444444443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-26 Score=194.17 Aligned_cols=281 Identities=18% Similarity=0.132 Sum_probs=182.7
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC---CCcchHHHHhhhHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK---GGWGWRISLAMAAAPA 78 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~Wr~~f~~~~~~~ 78 (371)
+++.|++.|+.+++.+|....+++.|+.+++|++.++++.++.++|.++|+++++.+.++. ...||||.|++.++++
T Consensus 137 ~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~ 216 (495)
T KOG2533|consen 137 LIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVIT 216 (495)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999998864422 2368999999999999
Q ss_pred HHHHHh-hhcCCCChh--hHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHH
Q 017485 79 SILTVG-ALFMPETPN--SIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAI 155 (371)
Q Consensus 79 ~~~~~~-~~~~~esp~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
++..++ ++++|+.|. +..++ +|..-..++.+ +.......++.++..+++ ..+.+.++.+
T Consensus 217 ~~~gi~~f~~lp~~P~~~~fl~~----~ek~~~~~~~~----------~~~~~~~~~~~~~~~~~~----a~~dp~vw~~ 278 (495)
T KOG2533|consen 217 LVLGIVVFFFLPDNPSKAWFLTD----EEKELVVERLR----------ESPSGGIENKFKWKGFKE----ALKDPGVWPF 278 (495)
T ss_pred HHHHheEEEEecCChhhccccch----HHHHHHHHHHH----------hccCCCcccccCHHHHHH----HHhchhHHHH
Confidence 988877 677999996 22111 11000011000 000000001111223333 3444557778
Q ss_pred HHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCchHHHHHHHHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDK----LGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~~~~~ 230 (371)
.+..++.....+++.+|+|.++++ .|++..++. .+..+..++++++.+++|+++|| ..+|........+..+..
T Consensus 279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~-~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g 357 (495)
T KOG2533|consen 279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQAN-LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG 357 (495)
T ss_pred HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhc-cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 888888888899999999999987 668888888 89999999999999999999999 455555554444443333
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh-hhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE-IRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
...... . ...............+ .....+......++....+ .|-+..+........++.+++++.
T Consensus 358 ~~~l~~-----------~-~~~~~~~~~~~~~~~~-~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~ 424 (495)
T KOG2533|consen 358 AISLLA-----------A-AVLPGAYGAFLIGPYG-LIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF 424 (495)
T ss_pred HHHHHh-----------h-ccchHHhHHHHhcchh-hHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence 222221 0 1111111111111111 1122233334445544444 444555555556667777777766
Q ss_pred HHHHh
Q 017485 310 LAMLC 314 (371)
Q Consensus 310 ~~~~~ 314 (371)
.....
T Consensus 425 ~~~~a 429 (495)
T KOG2533|consen 425 RSLDA 429 (495)
T ss_pred ccccC
Confidence 54433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=184.61 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=191.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+...+....++.|++| ++|+++++++..+..+|..+++.++..+.+.. .+||+.+.+.++..++.
T Consensus 100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999997 88999999999999999999999888766542 26999887766665544
Q ss_pred HHhhhcC-CCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVGALFM-PETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~~~~~-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+.++.. ++.|+ + + +++ +...++.+++ +..+...+..+
T Consensus 177 ~~~~~~~~~~~~~------~---~---------------------------~~~-~~~~~~~l~~----~~~~~l~~~~~ 215 (393)
T PRK09705 177 LFAWWWQSAREVA------S---S---------------------------HKT-TTTPVRVVFT----PRAWTLGVYFG 215 (393)
T ss_pred HHHHHHHhcCCCc------c---c---------------------------cCC-CcCCcccccC----HhHHHHHHHHH
Confidence 3333322 11111 0 0 000 0011112221 22233333444
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
.....++....+.|.+++++|.+..+.+ .......++.+++.++.+++.||++||+....+..+..++...+...
T Consensus 216 ~~~~~~~~~~~~lp~~l~~~g~s~~~ag-~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~---- 290 (393)
T PRK09705 216 LINGGYASLIAWLPAFYIEIGASAQYSG-SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL---- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhhh-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc----
Confidence 4445667788899999988999988888 78888999999999999999999999998888776666655443322
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccC-chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK-A 318 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 318 (371)
+.. ..... ..+.+.+.+... +.......+.. |++.+++..|+.+..+++++.++|.+.+++.|..+ +
T Consensus 291 -------~~~-~~~~~--~~l~g~g~g~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~ 359 (393)
T PRK09705 291 -------PLQ-LPVLW--AMVCGLGLGGAF-PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNY 359 (393)
T ss_pred -------cch-HHHHH--HHHHHHhccchH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 111 11111 222333333332 22333334555 56789999999999999999999999999999887 5
Q ss_pred chhhHHHHHHHH-HHHHHHHhccCCCCCC
Q 017485 319 GIFFFFGGWVIV-MTTFMHLFLPETKNVP 346 (371)
Q Consensus 319 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 346 (371)
...+.+.+++.+ ..+....+.||++++.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 360 LMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 554554444433 3344456677776654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=190.54 Aligned_cols=303 Identities=14% Similarity=0.109 Sum_probs=187.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|++.|++.++..+....++.|++|+++|++.+++...+..+|..+++.+++.+.+. ++||+.|++..+..++.
T Consensus 111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~w~~~f~~~~~~~~~~ 187 (496)
T PRK03893 111 LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV---WGWRALFFIGILPIIFA 187 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999998887764 56999998866655554
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHH-HHHH----Hhcccccccchh-------------hhh-
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELN-DLIR----ASSISKTINHPF-------------KKI- 142 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~-------------~~~- 142 (371)
.+....+||++++...+++ .++.++..+.....+....... .... ...........+ ...
T Consensus 188 ~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (496)
T PRK03893 188 LWLRKNLPEAEDWKEKHAG-KAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFM 266 (496)
T ss_pred HHHHHhCCCchhhhhhccc-cccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Confidence 4445667888765432222 1111111111100000000000 0000 000000000000 000
Q ss_pred h-hccchhHHHHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHH
Q 017485 143 I-QRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFL 220 (371)
Q Consensus 143 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 220 (371)
. .+..+++.........+......+....+.|.++ +++|.+..+.+ .......++.+++.++.|+++||++||+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~ 345 (496)
T PRK03893 267 VQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVA-NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYV 345 (496)
T ss_pred HHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 0 0111112222222222222222234567889998 57899998888 8888899999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHH
Q 017485 221 VGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300 (371)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 300 (371)
.+..+..+..+.+... .....+.........+. .+.+..+....++.|.+|++.|++++|+.+....+
T Consensus 346 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 413 (496)
T PRK03893 346 CSLLISQLLIIPVFAI-----------GGANVWVLGLLLFFQQM-LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGAL 413 (496)
T ss_pred HHHHHHHHHHHHHhhc-----------cccHHHHHHHHHHHHHH-HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhH
Confidence 7665554443322221 11112222222222111 12222334445678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchh
Q 017485 301 FIFFTAQTFLAMLCHFKAGIF 321 (371)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ 321 (371)
++.++|.+.+.+.+..++...
T Consensus 414 g~~lgp~l~g~l~~~~g~~~~ 434 (496)
T PRK03893 414 GGALAPILGALIAQRLDLGTA 434 (496)
T ss_pred HHHHHHHHHHHHhccCChHHH
Confidence 999999999999998886533
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-25 Score=189.76 Aligned_cols=289 Identities=20% Similarity=0.271 Sum_probs=191.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|++.|++.+...+...+++.|++|+++|++.+++...+..+|..+++.+++.+.+. .+||+.|++.++..++.
T Consensus 108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPLLL 184 (398)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc---ccceeehhhhhhHHHHH
Confidence 467899999999999999999999999999999999999999999999999998877664 46999999987555554
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. ..++||+|++...+ + .++.++..++.......+.+. +..+..+.++..+...+..+++ ...+..+.+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (398)
T TIGR00895 185 LLLLMRFLPESIDFLVSK-R-PETVRRIVNAIAPQMQAEAQS-ALPEQKATQGTKRSVFKALFQG-KTARITVLLWLLYF 260 (398)
T ss_pred HHHHHHhCCCCChHHHhc-C-HHHHHHHHHHHHHhccccccc-cccccccccchhhHHHHHHhcc-hhHHHHHHHHHHHH
Confidence 444 66789998765444 2 333333333322111110000 0000000000111112222222 22223333444444
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
......+....+.|.+.++.|.+..+.+ .......++.+++.++.++++||++||+.... ..+..+....+....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 335 (398)
T TIGR00895 261 MLLVGVYFLTNWLPKLMVELGFSLSLAA-TGGALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTL--- 335 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHh---
Confidence 4555666777888977888999988888 78888899999999999999999999944433 333333322222211
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAM 312 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (371)
.+.+......++.+.+.+... +....+..|.+|++.|+++.|+.+....++..++|.+.|.+
T Consensus 336 ---------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 336 ---------FSPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred ---------hCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 223333444445555444333 44557779999999999999999999999999999998864
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-25 Score=189.15 Aligned_cols=281 Identities=22% Similarity=0.247 Sum_probs=190.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-----CCcchHHHHhhhHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK-----GGWGWRISLAMAAA 76 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~Wr~~f~~~~~ 76 (371)
++++|+++|++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+.... ..++||+.|++.++
T Consensus 99 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 178 (394)
T TIGR00883 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAV 178 (394)
T ss_pred HHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999998876554311 23689999998887
Q ss_pred HHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 77 PASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 77 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
+.++..+.....||+|++..++++ +++.+.+.++.++++. + .++...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~-~-~~~~~~ 225 (394)
T TIGR00883 179 LVLIGLYLRRNLEETPVFEKAQEK-------------------------------HKKKRGPIRETLTKHR-K-PFLLGL 225 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHhc-------------------------------cccccCCHHHHHHhch-H-HHHHHH
Confidence 776666556667777643211100 0111223444443322 1 123333
Q ss_pred HHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
...+......+....+.|.+. +++|.+..+.+ .......+..+++.++.++++||+|||+.+.....+..+.......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T TIGR00883 226 GLVIATTTTFYLITTYLPTYLTQTLGLSANSAL-LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM 304 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666777888888 56888888887 7778888899999999999999999999877555444433322111
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV-CLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 314 (371)
... ...+.+.......+.+.+.+... +....+..|.+|++.|+++.++.+.. ..++..++|.+.+.+.+
T Consensus 305 ~~~---------~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 305 ALL---------DSGSFTLFFFLVLGLALIGGMYT-GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHh---------cCCchHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 110 01223333333444444443333 34457778999999999999985444 56788899999999999
Q ss_pred hcc-cchhhHHHH
Q 017485 315 HFK-AGIFFFFGG 326 (371)
Q Consensus 315 ~~~-~~~~~~~~~ 326 (371)
+.+ +...+...+
T Consensus 375 ~~g~~~~~~~~~~ 387 (394)
T TIGR00883 375 MTGDWYAIGYYLA 387 (394)
T ss_pred HcCcchhHHHHHH
Confidence 887 544444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=189.69 Aligned_cols=312 Identities=15% Similarity=0.023 Sum_probs=188.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+.+.|++.|++.|..++.....+.|++|+++|++++++.+.+..+|..+++.+.+..... ..+||+.|++.++++++.
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~ 198 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIV 198 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999988776543321 146999999999887776
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhh-hccchhHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKII-QRKYRPQLVMAILIPF 159 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 159 (371)
.+. ++++||+|+....+ ..+.. +++.. ++. .+ +.++ +.+.++.+ +...+++.++...+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~-~~~----~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (438)
T TIGR00712 199 ALFAFAMMRDTPQSCGLP---PIEEY------RNDYP-DDY----NE--KAEQ--ELTAKEIFMQYVLPNKLLWYIAIAN 260 (438)
T ss_pred HHHHHHhccCCHHhcCCC---Cchhc------ccccc-ccc----cc--cccc--ccchHHHHHHHHccCchHHHHHHHH
Confidence 544 66678887532100 00000 00000 000 00 0000 00111111 1112233344444444
Q ss_pred HHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
++.....+.+..+.|.++++ .|.+..+.+ +......+..+++.+++|+++||+++++....+.....+..........
T Consensus 261 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (438)
T TIGR00712 261 VFVYLLRYGVLDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM 339 (438)
T ss_pred HHHHHHHHHHHHhHHHHHHHccCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh
Confidence 44445556777899999965 688888888 7778888999999999999999996543322332222221111111100
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHhhcc
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFI-FFTAQTFLAMLCHFK 317 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 317 (371)
. +..+.+.........+.+.. +..........|.+|++.|+++.|+.+...++++ .++|.+.|.+.++.+
T Consensus 340 ---~-----~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g 410 (438)
T TIGR00712 340 ---N-----PAGNPLVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 410 (438)
T ss_pred ---c-----CCCchHHHHHHHHHHHHHHc-cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence 0 00112222222222222211 1111112345689999999999999999888875 689999999999888
Q ss_pred cchhh-HHHHHHHHHHHHHHHhccCCC
Q 017485 318 AGIFF-FFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 318 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 343 (371)
+...+ +.+++..+..+...+..||.|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 411 WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 65444 344444455555556666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=183.24 Aligned_cols=278 Identities=14% Similarity=0.053 Sum_probs=186.1
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+..++.....+.|++| ++|+++.++...+..+|..+++++...+.+. .+||+.|++.+++.++.
T Consensus 94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~ 169 (377)
T TIGR00890 94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL---EGVPAAFIYMGIIFLLV 169 (377)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc---ccHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999997 6899999999999999988766665544432 46999999999888777
Q ss_pred HHhh-hcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVGA-LFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+.. ++++|+|+.. .+++ ++ .++.+...++.++++. ++...+..+
T Consensus 170 ~~~~~~~~~~~~~~~-~~~~--~~---------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~ 215 (377)
T TIGR00890 170 IVLGAFLIGYPPGQL-IKTN--IE---------------------------VSVKDYTVWEMLRTPQ----FWVLYLSFF 215 (377)
T ss_pred HHHHHHheecCchhc-cccC--cc---------------------------cchhhhhHHHHHcCcc----HHHHHHHHH
Confidence 6664 4455443210 0000 00 0000111223333322 222222233
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
...........+.+.+.++++.+..+.+ .......++.+++.++.+++.||++||+.+..+..+..++.+.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---- 290 (377)
T TIGR00890 216 LNAVSGLLLIGLYKPYGQSLGLSDGFLV-LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI---- 290 (377)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc----
Confidence 2223333344556667788888877777 77888899999999999999999999999888777777665554432
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGI 320 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
+............+.+.+.+... +....+..|.+|+++|+++.|+.+....++..++|.+.+.+.+..++..
T Consensus 291 -------~~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 362 (377)
T TIGR00890 291 -------PMLNDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEY 362 (377)
T ss_pred -------ccchhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 11112222222333333333322 3334567899999999999999999999999999999999998888765
Q ss_pred hhHHHHHHHH
Q 017485 321 FFFFGGWVIV 330 (371)
Q Consensus 321 ~~~~~~~~~~ 330 (371)
.+.+.+++.+
T Consensus 363 ~f~~~~~~~~ 372 (377)
T TIGR00890 363 TFIVTGAFAL 372 (377)
T ss_pred HHHHHHHHHH
Confidence 5555444443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=183.47 Aligned_cols=280 Identities=15% Similarity=0.112 Sum_probs=187.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+. .|||+.+++..+..++.
T Consensus 115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 115 LLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW---GGLAGLGLLIMLLALLG 191 (399)
T ss_pred HHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999998887764 46999988877665544
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+.....|++++ +++ + +.+.++.+++.... .. ....
T Consensus 192 ~~~~~~~~~~~~----~~~---~-------------------------------~~~~~~~~~~~~~~--~~----~~~~ 227 (399)
T PRK05122 192 LLLARPRPAVPP----VKG---E-------------------------------RLPFRRVLGRVWPY--GM----GLAL 227 (399)
T ss_pred HHHHhcCCCCCC----CCc---c-------------------------------chhHHHHHHHHHHH--HH----HHHH
Confidence 433333333221 000 0 00111111111111 11 1111
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
....+.....+.|.+..+.+.+ ..+ .......++.+++.++.+++.||+++|+.+..+..+..++...+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----- 299 (399)
T PRK05122 228 ASIGFGTIATFITLYYAARGWD--GAA-LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA----- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHcccc--cch-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----
Confidence 1223344556677777666653 333 45567778888999999999999999998887777666665544432
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIF 321 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (371)
++.+...+...+.+++.+... +.......|..|++.|+++.|+.+....++..+++.+.+.+.+..++...
T Consensus 300 --------~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 370 (399)
T PRK05122 300 --------PSPWMALIGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSI 370 (399)
T ss_pred --------ccHHHHHHHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 223334444455555554333 23234446888999999999999999999999999999999998887655
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCC
Q 017485 322 FFFGGWVIVMTTFMHLFLPETKNV 345 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~ 345 (371)
+...+.+.+.+++...+.+++++|
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 371 FLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc
Confidence 555555555555555555554433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-24 Score=186.28 Aligned_cols=294 Identities=14% Similarity=0.078 Sum_probs=196.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+. ..|||..|++.++..++.
T Consensus 110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~ 187 (491)
T PRK11010 110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPC 187 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999998877652 146999999999887777
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+..+++||+++.. ++ +++. + +....++++.++++..+..... .+.
T Consensus 188 ~l~~~~~~e~~~~~---~~-~~~~-------------~-------------~~~~~~l~~~~~~~~~~~~ll~----~~l 233 (491)
T PRK11010 188 IIATLLAPEPTDTI---PV-PKTL-------------E-------------QAVVAPLRDFFGRNNAWLILLL----IVL 233 (491)
T ss_pred HHHHHhcCCCcccc---cc-ccch-------------h-------------hhHHHHHHHHHcCcCHHHHHHH----HHH
Confidence 66666678865310 00 0000 0 0001234445443332222211 122
Q ss_pred HhhchhhhHhhHHHHH-HHhCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 162 QVTGINIIGLYAPVLL-RTLKLSESASLLLSA-VVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
..........+.+.++ ++.|++..+.+ ... ....++.+++.+++|+++||+|+|+.+.++.++..+....+.....
T Consensus 234 ~~~~~~~~~~~~~~~l~~~~G~s~~~~g-~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~- 311 (491)
T PRK11010 234 YKLGDAFAMSLTTTFLIRGVGFDAGEVG-LVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI- 311 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 2223333444555555 66899999888 555 5666899999999999999999998877666555544433322110
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
...+.+.......+..++.+.... ..+.+..+..|++.+++..++.+....++..+++.+.|.+.+..|+.
T Consensus 312 --------~~~~~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~ 382 (491)
T PRK11010 312 --------TDKNLYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWP 382 (491)
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 001122222222222222222222 22455678889999999999999999999999999999999988887
Q ss_pred hhhHHHHHHHHHHHHHHHhccCC
Q 017485 320 IFFFFGGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ 342 (371)
..+.+..++.+.+++.....+++
T Consensus 383 ~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 383 TFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777666666666554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=187.98 Aligned_cols=295 Identities=14% Similarity=0.031 Sum_probs=167.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcc----c--CCCcchHHHHhhhH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK----I--KGGWGWRISLAMAA 75 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~--~~~~~Wr~~f~~~~ 75 (371)
+++.|+++|++.+... ....++.|++|+++|++++++......+|..+++.+...+.. . .+..|||+.|++.+
T Consensus 127 l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g 205 (476)
T PLN00028 127 FIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG 205 (476)
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 4578999999987654 456789999999999999999987777777776655543321 1 11247999999999
Q ss_pred HHHHHHHHhhhcCC-CChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHH
Q 017485 76 APASILTVGALFMP-ETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMA 154 (371)
Q Consensus 76 ~~~~~~~~~~~~~~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
+++++..+..++++ +.|+ ++ .++.. + +...++.+....+++.+++ +.++.
T Consensus 206 ~l~l~~~l~~~~~~~~~p~-----~~-~~~~~---~----------------~~~~~~~~~~~~~~~~~~~----~~~~~ 256 (476)
T PLN00028 206 LLHIIMGILVLTLGQDLPD-----GN-YRELK---K----------------SGTMPKDSFSKVLRYGVTN----YRTWI 256 (476)
T ss_pred HHHHHHHHHHHHHcCcCCC-----Cc-hhhHH---h----------------cCccccccHHHHHHHHHcC----chhHH
Confidence 88877766654444 3332 00 00000 0 0000000001112222222 22333
Q ss_pred HHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHH----HHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKIL----FLVGGIQMFVS 229 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~----~~~~~~~~~~~ 229 (371)
..+.++......+.+..+.|.++ +++|++..+++ .......++.+++.+++|+++||++||+. .........+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~ 335 (476)
T PLN00028 257 LALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAG-AIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLG 335 (476)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 33334433444455666788887 55799998888 88888999999999999999999987621 11111111111
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
.+.+..... . .+.........+++.+..... +..+.+..+.. ++.++++.|+.+..+.+++.+++.+.
T Consensus 336 ~i~~~~~~~---------~-~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~ 403 (476)
T PLN00028 336 GVFCIWLGR---------A-NSLGAAIVVMILFSIFVQAAC-GATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLF 403 (476)
T ss_pred HHHHHHhcc---------c-chHHHHHHHHHHHHHHHHHhh-hhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHH
Confidence 111111100 0 122222333333333322222 23345556664 57899999999888888888888765
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHhcc
Q 017485 310 LAMLCHFKAGIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
+ ..+..++...+.+.+++.+++.+..++.+
T Consensus 404 ~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 404 F-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred H-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 4 11222344444444444444555555543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=183.81 Aligned_cols=292 Identities=12% Similarity=0.012 Sum_probs=193.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhC-CCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMA-PPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++.+.+.. +|||.|++...++++
T Consensus 97 li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~---gwr~~f~i~~~~~~~ 173 (495)
T PRK14995 97 LIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF---YWGSVFLINVPIVLV 173 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---ChHHHHHHHHHHHHH
Confidence 578999999999999998888887776 6789999999999999999999999999988754 599999998877776
Q ss_pred HHHh-hhcCCCChhhHHhhCCChHHHHHHH------------HHHhCccchHHH-HHH-------HHHHhcccccccchh
Q 017485 81 LTVG-ALFMPETPNSIIQRSNDPQKAKRML------------QRVRGTADVEAE-LND-------LIRASSISKTINHPF 139 (371)
Q Consensus 81 ~~~~-~~~~~esp~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~ 139 (371)
..++ .+++||+|+. +.++.|...... ++.......... ... .......+.+.+.+.
T Consensus 174 ~~~l~~~~l~~~~~~---~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~ 250 (495)
T PRK14995 174 VMGLTARYVPRQAGR---RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPM 250 (495)
T ss_pred HHHHHHHhCCCCCCC---CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6555 5667876631 111122111100 000000000000 000 000000011111222
Q ss_pred --hhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCch
Q 017485 140 --KKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRK 216 (371)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 216 (371)
.++++++ .+....+..+......+....+.|.+++. +|.++.+++ ....+..++..++.++.|++.||+|+|
T Consensus 251 ~~~~lf~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag-~~~~~~~~~~~~~~~~~g~l~~r~g~~ 325 (495)
T PRK14995 251 IDMRLFTHR----IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAG-MFMLPVMVASGFSGPIAGILVSRLGLR 325 (495)
T ss_pred cCHHHhCCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 2334332 23333344444444556677788888865 799999999 888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHH
Q 017485 217 ILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVA 296 (371)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 296 (371)
+.+..+.++..++...+.... ...+.+.......+.+++.+....+.. ....+..|++.++.+.++.+.
T Consensus 326 ~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 394 (495)
T PRK14995 326 LVATGGMALSALSFYGLAMTD----------FSTQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETM 394 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHH
Confidence 988877776666655443321 112233334445555666555444443 444677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 017485 297 VCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~ 315 (371)
...+|+.+++.+.+.+.++
T Consensus 395 ~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 395 AYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-23 Score=175.76 Aligned_cols=281 Identities=14% Similarity=0.146 Sum_probs=184.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccch--hhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAF--NIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 79 (371)
+++.|+++|.+.+...|...+++.|+.|+++|++. .+....+.++|.++++.+++.+.+. .+||+.|++.++..+
T Consensus 90 l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~ 166 (375)
T TIGR00899 90 LLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFV 166 (375)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHH
Confidence 45789999988888889889999999987777754 5778888899999999998887764 469999999998877
Q ss_pred HHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHH
Q 017485 80 ILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIP 158 (371)
Q Consensus 80 ~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (371)
+..+. ++++||+|++. + .++ .+.+.++.++++..+......
T Consensus 167 ~~~~~~~~~~~~~~~~~----~-~~~------------------------------~~~~~~~~~~~~~~~~~~~~~--- 208 (375)
T TIGR00899 167 LCGVLVWLFLPSYPRGA----P-GAL------------------------------TRLEVRGLLASRDTRLLFVAC--- 208 (375)
T ss_pred HHHHHHHHhCCCcccCc----c-ccc------------------------------CcchhhhhhcCcchHHHHHHH---
Confidence 66655 45588876421 1 000 000111122222222111111
Q ss_pred HHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIM 237 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 237 (371)
+...........+.|.++ +++|.++.+.+ .......+..+++.++.+++.||++||+.+..+.+...+....+...
T Consensus 209 -~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~- 285 (375)
T TIGR00899 209 -TLMWGCNILYIINMPLLIIHELGLPDKLAG-LMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD- 285 (375)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-
Confidence 111222333445667776 56888888887 66666667778888999999999999998877665544433222221
Q ss_pred HhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 238 AAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
++.+.......+.+.+.+.. .+....+..|..|+ +++++.++.+...+++..++|.+.+.+.+..+
T Consensus 286 ------------~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g 351 (375)
T TIGR00899 286 ------------NSLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS 351 (375)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22333333334444443332 23444566788775 56799999999999999999999999999888
Q ss_pred cchhhHHHHHHHHHHHHHHHhcc
Q 017485 318 AGIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
+...+...+++.+.+.+...+++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 352 YHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred chhHHHHHHHHHHHHHHHHheec
Confidence 76666665555555555555544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-23 Score=175.73 Aligned_cols=276 Identities=14% Similarity=0.072 Sum_probs=178.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+....++.|++|+++|++.+++...+..+|..+++++++.+.+. .+||+.|++.++..++.
T Consensus 94 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~gwr~~f~~~~~~~~~~ 170 (382)
T PRK10091 94 LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE---FSWRYTFLLIAVFNIAV 170 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---ccHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999998887664 46999999998877666
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. +.++||.++ +.+ .+. +..+ +.++++. .+......+
T Consensus 171 ~~~~~~~lp~~~~----~~~-~~~-------------------------------~~~~-~~~~~~~----~~~~~~~~~ 209 (382)
T PRK10091 171 LASIYFWVPDIRD----EAK-GGL-------------------------------REQF-HFLRSPA----PWLIFAATM 209 (382)
T ss_pred HHHHHHhCCCCCc----ccc-cCH-------------------------------HHHH-HHhcChH----HHHHHHHHH
Confidence 554 456777542 100 000 0001 1111211 122222222
Q ss_pred HHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
....+.+....+.+.++ +..|.++.+.+ .......++.+++.++.+++.||+++|+.+..+..+..++.+.+....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~-- 286 (382)
T PRK10091 210 FGNAGVFAWFSYIKPYMMFISGFSETSMT-FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG-- 286 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH--
Confidence 22223333344555455 55899988888 888888999999999999999999999998887777666654443321
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF-KA 318 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 318 (371)
+..+...+...+.+.+......+.......+..|++.++.+ ..+....+|..++|.+.|.+.+.. ++
T Consensus 287 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~ 354 (382)
T PRK10091 287 ----------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAY 354 (382)
T ss_pred ----------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCc
Confidence 11222233333333332222222222333455455555544 346778899999999999999864 56
Q ss_pred chhhHHHHHHHHHHHHHH
Q 017485 319 GIFFFFGGWVIVMTTFMH 336 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~ 336 (371)
...+...++..++.+...
T Consensus 355 ~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 355 NYVALPAALLSFAAMSSL 372 (382)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 555555444444443333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=179.16 Aligned_cols=267 Identities=12% Similarity=0.014 Sum_probs=186.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++.+++.+.+..+|.++++.+++.+.+. .+||+.|++.++..++.
T Consensus 95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~ 171 (365)
T TIGR00900 95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---LGIKWAIWVDAVGFAIS 171 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999888764 45999999988776665
Q ss_pred HHhhhcC--CCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHH
Q 017485 82 TVGALFM--PETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPF 159 (371)
Q Consensus 82 ~~~~~~~--~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (371)
.+..+.+ ||+++ +++ ++.. ++..+ +.+..+++.++++. ++...+..
T Consensus 172 ~~~~~~~~~~~~~~----~~~-~~~~-------------~~~~~----------~~~~~~~~~~~~~~----~~~~~~~~ 219 (365)
T TIGR00900 172 ALLIVSVRIPELAA----SEI-QALS-------------NAVLR----------DTREGIKFVLKNPL----LRTLLLLA 219 (365)
T ss_pred HHHHHhcccccCCC----ccc-cccc-------------hhHHH----------HHHhHHHHHHcCcH----HHHHHHHH
Confidence 5543333 33321 000 0000 00000 00112333333332 22222222
Q ss_pred HHHhhchhhhH-hhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIG-LYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIM 237 (371)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 237 (371)
+.......... .+.|.+.++ +|.+..+.+ .......++.+++.++.+++.||.+||+.+..+..+..++...+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 297 (365)
T TIGR00900 220 LLFNLVFAPAIVALFPYVQSKYLGRGSTHYG-WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT- 297 (365)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-
Confidence 22223333333 677888865 788888888 88888899999999999999999999998887766665555444432
Q ss_pred HhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 238 AAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
+ ++.+...+..++.+.+.+.. .+....+..|..|++.|+++.|+.+....++..+++.+.|.+.|..|
T Consensus 298 ----------~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 298 ----------P-PNFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred ----------c-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 12344444455555555433 34455677899999999999999999999999999999999988653
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=175.50 Aligned_cols=272 Identities=14% Similarity=0.142 Sum_probs=182.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++++++.+.+. .|||+.+.+..+..++.
T Consensus 115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~ 191 (392)
T PRK12382 115 LVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH---FGFAALALTTMVLPLLA 191 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999998887664 46999877665554443
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.......||.++ +++ + +.+.++..+..... ... .+.
T Consensus 192 ~~~~~~~~~~~~----~~~---~-------------------------------~~~~~~~~~~~~~~-~~~-----~~l 227 (392)
T PRK12382 192 WAFNGTVRKVPA----HAG---E-------------------------------RPSLWSVVGLIWKP-GLG-----LAL 227 (392)
T ss_pred HHHHHhccCCCC----Ccc---c-------------------------------CchHHHHHHHHHHh-HHH-----HHH
Confidence 333223343321 000 0 00111111111111 111 111
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
..........+.|.++++.+.+. .+ .......++.+++.++.|++.||+|+|+.+..+..+..++...+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----- 299 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFASKGWAM--AG-FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA----- 299 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCCch--hH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----
Confidence 12233445566777777766653 33 44556677888999999999999999999888877776665544332
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIF 321 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (371)
++.+.......+.+.+.+... +.......|.+|+++|+++.|+.+....++..++|.+.+.+.++.++...
T Consensus 300 --------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~ 370 (392)
T PRK12382 300 --------PTAWVALAGAALTGAGCSLIF-PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSV 370 (392)
T ss_pred --------ccHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 223333444444554444333 33334557888999999999999999999999999999999999887666
Q ss_pred hHHHHHHHHHHHHHHH
Q 017485 322 FFFGGWVIVMTTFMHL 337 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~ 337 (371)
+...+.+.+.+.+...
T Consensus 371 ~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 371 FLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655555555444443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=172.79 Aligned_cols=266 Identities=17% Similarity=0.122 Sum_probs=177.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.++++++++.+.+. +|||+.|++.++++++.
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~ 187 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLC 187 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999988764 46999999988777665
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. ....||+|+. + ++ .+.+.++.++++ .++...+..+
T Consensus 188 ~l~~~~~~p~~~~~-----~--~~------------------------------~~~~~~~~l~~~----~~~~~~~~~~ 226 (394)
T PRK10213 188 IFWIIKSLPSLPGE-----P--SH------------------------------QKQNTFRLLQRP----GVMAGMIAIF 226 (394)
T ss_pred HHHHHHHCCCCCcc-----c--cc------------------------------chhHHHHHhcCH----HHHHHHHHHH
Confidence 544 3346765420 0 00 001122233222 2222222233
Q ss_pred HHhhchhhhHhhH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYA-PVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
......+....+. |.+.+++|++....+ ......+++.+++.++.+++.||.+ |+.+..+..+.....+.+....
T Consensus 227 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~-- 302 (394)
T PRK10213 227 MSFAGQFAFFTYIRPVYMNLAGFGVDGLT-LVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG-- 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh--
Confidence 3333334444454 777788899988888 7788888999999999999999954 4443433333333322222221
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
++.+.......+.+++++... +....++.+..| +.++...+.......++..+++.+.|.+.+..+..
T Consensus 303 ----------~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~ 370 (394)
T PRK10213 303 ----------SDKIVATGVAIIWGLTFALVP-VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLT 370 (394)
T ss_pred ----------hhHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 223444445555555554333 333334456666 44566777777888899999999999999988765
Q ss_pred hhhHHHHH
Q 017485 320 IFFFFGGW 327 (371)
Q Consensus 320 ~~~~~~~~ 327 (371)
..+..+++
T Consensus 371 ~~~~~~~~ 378 (394)
T PRK10213 371 SPLMLSGT 378 (394)
T ss_pred hHHHHHHH
Confidence 55555443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=174.03 Aligned_cols=290 Identities=14% Similarity=0.078 Sum_probs=180.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHH-HHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGV-LSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+++.|+++|++.+...+....++.|++|+++|++++++.+.+.++|. ++++.+++.+.+. .||+..++......++
T Consensus 108 l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~ 184 (402)
T TIGR00897 108 ILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLT 184 (402)
T ss_pred HHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHH
Confidence 45789999999998888888999999999999999999999999997 5788887766553 3555554443333222
Q ss_pred HHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHH
Q 017485 81 LTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPF 159 (371)
Q Consensus 81 ~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (371)
..+. .++.+|.++.. .+++ +++ .++ .+..+++.++++ .++...+..
T Consensus 185 ~~~~~~~~~~~~~~~~-~~~~-~~~-----------------~~~----------~~~~~~~~~~~~----~~~~~~~~~ 231 (402)
T TIGR00897 185 GGVIALFSNKDIFTPQ-HMQT-REK-----------------FSE----------LGKAATILFTNP----NVLLGGMVR 231 (402)
T ss_pred HHHHHHhccCCCCCcc-cccC-Ccc-----------------hhh----------HHHHHHHHHcCh----hHHHHHHHH
Confidence 2222 33344432100 0000 000 000 011122333332 234444444
Q ss_pred HHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHH-HHHHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFL-VGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~ 238 (371)
++.....+.+..+.|.+.+++|.+..+.+ .......++.+++.+..|+++||++||+... .+.+...++...+.....
T Consensus 232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~ 310 (402)
T TIGR00897 232 IINTIGLFGFAVFLPMFVAELGFSTSEWL-QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ 310 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667788899999988999988887 7777788999999999999999999988764 222223332222222100
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKA 318 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
. ..++.+...+...+.+.+.+. ..+.. ....|.. +++|+++.|+.+....+++.++|.+.+.+.+..++
T Consensus 311 ---~-----~~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~ 379 (402)
T TIGR00897 311 ---H-----FGHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA 379 (402)
T ss_pred ---c-----cCCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 0 001223333334444444332 23333 3446764 46899999999999999999999999999998886
Q ss_pred chhhHHHHHHHHHHHHHHHhc
Q 017485 319 GIFFFFGGWVIVMTTFMHLFL 339 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~ 339 (371)
...+.+.+++.+++.+...++
T Consensus 380 ~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 380 IGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 554444444444444444433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=177.08 Aligned_cols=293 Identities=14% Similarity=0.155 Sum_probs=188.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+...+...+++.|++|+++|++..++.....++|..+++.+++.+.+. .|||+.|++..+..++.
T Consensus 101 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---~gw~~~f~~~~~~~~l~ 177 (471)
T PRK10504 101 LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---ASWHWIFLINIPVGIIG 177 (471)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---ccHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999888764 46999999988776666
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHH---------HhCccc---hHHHHHH-----------HHHHhcccccccc
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQR---------VRGTAD---VEAELND-----------LIRASSISKTINH 137 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~-----------~~~~~~~~~~~~~ 137 (371)
.+. ....|+.+. .+.+ .+........ ..+... ....... ...+++..++...
T Consensus 178 ~~~~~~~~~~~~~---~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (471)
T PRK10504 178 AIATLMLMPNYTM---QTRR-FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALF 253 (471)
T ss_pred HHHHHHhCCCccc---cCCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 555 344555432 1111 2211111000 000000 0000000 0000001111111
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCch
Q 017485 138 PFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRK 216 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 216 (371)
+. ++++++. +.......+...........+.|++++ ..|.++...+ +......++.+++.++.+++.||+|||
T Consensus 254 ~~-~l~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~g~~ 327 (471)
T PRK10504 254 SL-KLFRTRT----FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRIVVQVVNRFGYR 327 (471)
T ss_pred CH-HHhcccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 22 2333332 333333333434445556677888886 4888888888 778888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHH
Q 017485 217 ILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVA 296 (371)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 296 (371)
+.+..+..+..+....+.... ...+.+.......+.+.+.+....+. ..+..+..|++.++.++++.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~ 396 (471)
T PRK10504 328 RVLVATTLGLALVSLLFMLVA----------LLGWYYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLSM 396 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----------ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHHH
Confidence 999888777766655544321 01112222222333334333333333 3555678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 017485 297 VCLVFIFFTAQTFLAMLCHFKA 318 (371)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
...++..+++.+.+.+.+..++
T Consensus 397 ~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 397 IMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988776553
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-24 Score=183.61 Aligned_cols=288 Identities=13% Similarity=0.058 Sum_probs=180.1
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHH-HHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSAN-LLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+++.|++.|++.+...+...+++.|++|+++|++.+++.+.+..+|..+++ .++..+.+. .+||+.|++.+++.++
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---YSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999 465555443 4699999998887766
Q ss_pred HHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHH
Q 017485 81 LTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPF 159 (371)
Q Consensus 81 ~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (371)
..+. .++.||+|+....++. ++.+ .++.+. +.++.+++.+..+...++.++ ++.++...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 225 (379)
T TIGR00881 163 VSLICFLLLRDSPQSCGLPPA--EEMP--------NEEPDG---DAEKKEEELTKKQIFLQYVLL----NKVLWYISLGY 225 (379)
T ss_pred HHHHHheeeCCCccccccCcc--ccCc--------cccccc---ccccccccccchHHHHHHHHh----cchHHHHHHHH
Confidence 5555 5567777642111100 0000 000000 000000000011112223332 23344444444
Q ss_pred HHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
+........+..+.|.++ +.+|.+..+.+ .......++.+++.++.+++.||..+|+...............+.....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
T TIGR00881 226 VFVYVVRTGILDWSPLYLTQEKGFSKEKAS-WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence 444455566777888888 45799988888 7888888999999999999999864333222222211111111111100
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKA 318 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
.+..+...........+.... +..+....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.++.++
T Consensus 305 --------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 375 (379)
T TIGR00881 305 --------NPAANPLMDLICLFALGFLVY-GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW 375 (379)
T ss_pred --------CcchhHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence 001122222233333332222 22233345668999999999999999999999999999999999998876
Q ss_pred c
Q 017485 319 G 319 (371)
Q Consensus 319 ~ 319 (371)
.
T Consensus 376 ~ 376 (379)
T TIGR00881 376 A 376 (379)
T ss_pred c
Confidence 4
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=175.55 Aligned_cols=283 Identities=11% Similarity=0.005 Sum_probs=184.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+....++.|++|+++|++.++..+....+|..++|.+.+.+... ..+||+.|.+.+++.++.
T Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~gw~~~f~~~~~~~~~~ 175 (394)
T PRK03699 98 FSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--SIEWYWVYACIGLVYVAI 175 (394)
T ss_pred HHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999888999988988887665431 246999999988877665
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+..++ ++.|+. ++++ + +++ +... +... ++.++...+..++
T Consensus 176 ~~~~~~-~~~p~~--~~~~--~--------------------------~~~---~~~~----~~~~-~~~~~~~~~~~~~ 216 (394)
T PRK03699 176 FILTLF-SEFPAL--GKHA--P--------------------------KAD---KPVA----KEKW-GIGVLFLAIAALL 216 (394)
T ss_pred HHHHHh-cCCccc--cccC--c--------------------------ccc---Cccc----cccC-ChHHHHHHHHHHH
Confidence 554333 222210 0000 0 000 0000 0111 1223334444444
Q ss_pred HhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 162 QVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
.....+.+..|.|.++ +++|++..+.+ .......++..++.++.++++||++||+.+.....+..+....+...
T Consensus 217 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~---- 291 (394)
T PRK03699 217 YILAQLTFISWVPEYAQKKFGMSLEDAG-NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT---- 291 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHhh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc----
Confidence 4555667788999999 55799988888 77788888999999999999999999998877665554443332221
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGI 320 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
++........+..+++.+..+ +....+..|..| +.++...+.......+|..++|.+.+.+.+..++..
T Consensus 292 ---------~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~ 360 (394)
T PRK03699 292 ---------DDPSHLLYAILGLGFFSSAIY-TTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQA 360 (394)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchh
Confidence 112222333333443333222 333344456555 445677888888899999999999999999888655
Q ss_pred hhHHHHHHHHHHHHHHHhccC
Q 017485 321 FFFFGGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~ 341 (371)
.+....++.+++.+.....++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 361 ALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=173.86 Aligned_cols=282 Identities=15% Similarity=0.090 Sum_probs=185.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|.+..++......+|..++|.+++.+.+. .+||+.|++.++..++.
T Consensus 104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~~~ 180 (406)
T PRK15402 104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAALS 180 (406)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHH
Confidence 567899999999998899999999999999999999999888889999999998877664 45999999988887766
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. ....||+++.. ++ ..+ .++ ...++++.++++. ++...+..+
T Consensus 181 ~~~~~~~~~~~~~~~---~~-~~~-----------------~~~----------~~~~~~~~~~~~~----~~~~~~~~~ 225 (406)
T PRK15402 181 FFGLWRAMPETAGRV---GE-KLS-----------------LKE----------LGRDYKLVLKNRR----FVAGALALG 225 (406)
T ss_pred HHHHHHhCCCCCccc---cc-ccc-----------------HHH----------HHHHHHHHHcCcH----HHHHHHHHH
Confidence 654 44567765310 00 000 000 0112233333322 222322222
Q ss_pred HHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
...........+.|.++ +++|.++.+.+ .......++.+++.++.+++.||+++|+.+.++.++..++...+......
T Consensus 226 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~ 304 (406)
T PRK15402 226 LVSLPLLAWIALSPVILISGEQLSSYEYG-LLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI 304 (406)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22233344455677776 56888888777 66666777889999999999999999999888877766666555443100
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
...+.+.......+.+.+.+....+. ....... +++.|++..++.+....++..+++.+.+.+.+..+..
T Consensus 305 --------~~~~~~~~~~~~~~~g~g~~~~~~~~-~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 374 (406)
T PRK15402 305 --------SSHAYLWLTAGLSLYAFGIGLANAGL-YRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG 374 (406)
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHhhhH-HHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Confidence 01123333444444554444333222 2222223 4589999999999999999999999999988877654
Q ss_pred hhhHHHHHHHHHH
Q 017485 320 IFFFFGGWVIVMT 332 (371)
Q Consensus 320 ~~~~~~~~~~~~~ 332 (371)
.+....+++.+..
T Consensus 375 ~~~~~~~~~~~~~ 387 (406)
T PRK15402 375 LFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHH
Confidence 4444443333333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=183.22 Aligned_cols=293 Identities=14% Similarity=0.123 Sum_probs=180.5
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTV 83 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 83 (371)
..|+++|++.+...+....++.|+++ ++|+++.++.+.+..+|..+++++++.+.+. +|||+.|++.+++.++..+
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v 188 (455)
T TIGR00892 113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCV 188 (455)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHH
Confidence 35799999999877888888999996 7999999999999999999999998877664 4699999999988776655
Q ss_pred hhhcC-CCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHH
Q 017485 84 GALFM-PETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQ 162 (371)
Q Consensus 84 ~~~~~-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (371)
..+++ |+.+.. .+.+ ++.. +..+..+..+ +.......++..+....+.++ ++.++......+..
T Consensus 189 ~~~~~~~~~~~~--~~~~--~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~ 253 (455)
T TIGR00892 189 CGALMRPVGPSQ--RVSK--SKSK---EGLPPDGSTK----KLSKKSTAEKINRFLDFSLFT----HRGFLVYLSGNVIM 253 (455)
T ss_pred HHHHhCCCCccc--cccc--cccc---ccCCCCCccc----cccccchhhhhhhhcchHHhc----CchHHHHHHHHHHH
Confidence 53333 322210 0000 0000 0000000000 000000000000000012222 22344444444444
Q ss_pred hhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CchHHHHHHHHHHH--HHHHHHHHHHH
Q 017485 163 VTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL--GRKILFLVGGIQMF--VSQVIIGSIMA 238 (371)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~--~~~~~~~~~~~ 238 (371)
..+++....++|.+.++.|++..+.+ ......+++.+++.++.++++||. ++|+...++..... ++.+.....
T Consensus 254 ~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-- 330 (455)
T TIGR00892 254 FLGFFAPIIFLVPYAKDKGVDEYEAA-FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-- 330 (455)
T ss_pred HHHccchHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 45556667788888888999988888 788888999999999999999973 33433333222222 222221111
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK- 317 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 317 (371)
.+.+...+...+.+++.+.. .+....+..|.+|++.++++.|+.+....++++++|.+.|.+.+..+
T Consensus 331 -----------~~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~ 398 (455)
T TIGR00892 331 -----------GDYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKN 398 (455)
T ss_pred -----------chHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCC
Confidence 22344444455555554433 33445666888999999999999999999999999999999988764
Q ss_pred cchhhHHHHHHHH
Q 017485 318 AGIFFFFGGWVIV 330 (371)
Q Consensus 318 ~~~~~~~~~~~~~ 330 (371)
+...+...++..+
T Consensus 399 ~~~~f~~~~~~~l 411 (455)
T TIGR00892 399 YKYIFYASGSIVV 411 (455)
T ss_pred cchHHHHhhHHHH
Confidence 5444444433333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-22 Score=171.59 Aligned_cols=279 Identities=15% Similarity=0.116 Sum_probs=175.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcc--cchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHR--GAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+.+.+.|...+...|....++.|+.++++| +...++.+.+.++|.++++++++.+.+. .|||..|++.++..++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~~~~~~~~~~ 186 (393)
T PRK15011 110 FVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYLSAAVAFIVC 186 (393)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHHHHHHHHHHH
Confidence 344444444457788888888898876655 3456788899999999999999988764 46999999998877766
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. +.++||+|+ +++ .++ ++ .... ++.. +..+....+. .
T Consensus 187 ~~~~~~~~~~~~~----~~~-~~~-------------------------~~----~~~~----~~~~-~~~~~~~~~~-~ 226 (393)
T PRK15011 187 GVMVWLFLPSMRK----ELP-LAT-------------------------GT----LEAP----RRNR-RDTLLLFVIC-T 226 (393)
T ss_pred HHHHHhhcCccCC----CCc-ccc-------------------------cc----cccc----cccc-ccHHHHHHHH-H
Confidence 655 556787653 100 000 00 0000 0000 1111111111 2
Q ss_pred HHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
........+..+.|.++ ++++.+..+.+ .......+..+++.++.|+++||++||+.+..+.....+....+...
T Consensus 227 ~~~~~~~~~~~~~p~~l~~~~~~~~~~~g-~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--- 302 (393)
T PRK15011 227 LMWGTNSLYIINMPLFIINELHLPEKLAG-VMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--- 302 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH---
Confidence 22233444556788877 56888888877 66666667788899999999999999998776654444332222111
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
++.+..+....+...+.+.... ....+..|.+|+ .|+++.++.+...++|..+++.+.+.+.+..++.
T Consensus 303 ----------~~~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~ 370 (393)
T PRK15011 303 ----------HSPAILLGLQLLNAIYIGILGG-IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYH 370 (393)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1222222222222222222111 223445788875 5899999999999999999999999999988876
Q ss_pred hhhHHHHHHHHHHHHHHHhccC
Q 017485 320 IFFFFGGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~ 341 (371)
..+....++.+.+++.+++.||
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 371 AVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 6666666666666666666664
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-22 Score=168.59 Aligned_cols=285 Identities=16% Similarity=0.062 Sum_probs=184.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhc-----cc----------CCCcc
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQ-----KI----------KGGWG 66 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~----------~~~~~ 66 (371)
+++.|++.|++ ++.++.....+++|+|+++||+++++.....++|..+++++...+. .. .+..+
T Consensus 131 lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~ 209 (462)
T PRK15034 131 FIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS 209 (462)
T ss_pred HHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence 57899999998 7799999999999999999999999997666666665555443221 10 11346
Q ss_pred hHHHHhhhHHHHHHHHHhhhc-CCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhc
Q 017485 67 WRISLAMAAAPASILTVGALF-MPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQR 145 (371)
Q Consensus 67 Wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (371)
||..+++..++.++..+..++ .++.|. + + .......+.+|+
T Consensus 210 ~~~~~~~~~~~~iv~~i~~~~~~~~~~~----~-~---------------------------------~~~~~~~~vlk~ 251 (462)
T PRK15034 210 LANAAWIWVPLLAIATIAAWSGMNDIAS----S-R---------------------------------ASIADQLPVLQR 251 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccc----c-c---------------------------------cCHHHHHHHhCC
Confidence 999988888887777666444 433221 0 0 001112223333
Q ss_pred cchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 017485 146 KYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQ 225 (371)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 225 (371)
+ ..|.+.+.+++.+.++..+..++|++.++ .++..... .......+...+..+++|+++||+|+|+++.++.+.
T Consensus 252 ~----~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l-~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~ 325 (462)
T PRK15034 252 L----HLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNIL-RLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIF 325 (462)
T ss_pred C----chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHH-HHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHH
Confidence 3 35566666777777888888899999865 23322222 334445677888899999999999999999988877
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCch---------------------
Q 017485 226 MFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL--------------------- 284 (371)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--------------------- 284 (371)
+.++...+..... . ....+.+...........+.+.+...+ +-++.+.+|+
T Consensus 326 ~~i~~~~~~l~lp----~---~~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~ 397 (462)
T PRK15034 326 MAIFSALLFLTLP----G---TGSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAV 397 (462)
T ss_pred HHHHHHHHHHHhc----c---ccccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHH
Confidence 7766544333320 0 011223333333333334444444433 3455677764
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cc-hhhHHHHHHHHHHHHHHHhc
Q 017485 285 EIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK-AG-IFFFFGGWVIVMTTFMHLFL 339 (371)
Q Consensus 285 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 339 (371)
++-|.+.|+..+.+.+|+++.|.+++...+..+ +. .++.+.+...++.++.+++.
T Consensus 398 ~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 398 TETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 156788899999999999999999999988776 33 34445555555555555544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-22 Score=171.37 Aligned_cols=263 Identities=16% Similarity=0.105 Sum_probs=176.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++..++.+....+|..+++.+++.+.+. .+||+.|++.++..++.
T Consensus 96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999877664 45999999988877666
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .++.||+++. ++ .++. ++ ....+++.++++. ++...+...
T Consensus 173 ~~~~~~~~~~~~~~----~~-~~~~-------------~~--------------~~~~~~~~~~~~~----~~~~~~~~~ 216 (385)
T TIGR00710 173 SALIFFILPETLPY----EA-RIQI-------------ST--------------YFETFLLLLKSKM----FWGYALIYG 216 (385)
T ss_pred HHHHHHhCCCCCCC----cc-cCCH-------------HH--------------HHHHHHHHHcCch----hHHHHHHHH
Confidence 555 4556776431 11 0000 00 0111233333322 222222222
Q ss_pred HHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
......+....+.|.+++ ++|.++.+.+ .......++.+++.++.+++.||+++|+.+..+..+..++...+......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (385)
T TIGR00710 217 ASFGGFFAFFSGAPFVYIDIMGVSPSVFG-LLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL 295 (385)
T ss_pred HHHHHHHHHHHcChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344556667787774 6899988888 77888889999999999999999999999888776666665554433110
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
.............+.+.+.+... +....+..|..| +.++++.++.+.....++.+.+.+.+...+
T Consensus 296 --------~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 296 --------GLGSWAMIIGPMMFVGIGNSMIS-SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred --------ccchHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00112222333333434333332 333455567766 678999999998888777777777664433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-22 Score=168.91 Aligned_cols=258 Identities=23% Similarity=0.308 Sum_probs=204.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+.. +||+.+++.+++.++.
T Consensus 90 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 166 (352)
T cd06174 90 LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL---GWRWLFLILAILGLLL 166 (352)
T ss_pred HHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999998887654 4999999998887776
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+...+++ +.++...+..+.
T Consensus 167 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~~~ 186 (352)
T cd06174 167 ALLLLFLL------------------------------------------------------------RLLLLLALAFFL 186 (352)
T ss_pred HHHHHHHH------------------------------------------------------------HHHHHHHHHHHH
Confidence 66544431 123334444555
Q ss_pred HhhchhhhHhhHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchH-HHHHHHHHHHHHHHHHHHHHHh
Q 017485 162 QVTGINIIGLYAPVLLRTL-KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKI-LFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
..........+.|.+.++. +.+..+.+ .......++..++.++.+++.||++||+ .+..+..+..++...+...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 262 (352)
T cd06174 187 LSFGYYGLLTYLPLYLQEVLGLSAAEAG-LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--- 262 (352)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---
Confidence 5566677888889888665 88888888 8889999999999999999999999999 8888888777776666553
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
++.+.......+.+.+.+.. .+....+..|..|+++|++..|+.+....++..+++.+.+.+.+..++.
T Consensus 263 ----------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~ 331 (352)
T cd06174 263 ----------PSLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331 (352)
T ss_pred ----------ccHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 22444555555555555544 3555678899999999999999999999999999999999999887776
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 017485 320 IFFFFGGWVIVMTTFMHL 337 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ 337 (371)
..+....+..+.+.+...
T Consensus 332 ~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 332 GVFLILAALALLAALLLL 349 (352)
T ss_pred hHHHHHHHHHHHHHHHhe
Confidence 666555555555444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=182.30 Aligned_cols=294 Identities=15% Similarity=0.085 Sum_probs=192.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+++.+++.+.+. ++||+.|++.++++++.
T Consensus 93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~w~~~f~~~~~~~~~~ 169 (485)
T TIGR00711 93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN---YHWRWIFLINVPIGIIV 169 (485)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC---cCceehhhhhhHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999888764 56999999998887766
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHH---------HH-hCcc-c--hHHHHHHH----------HHHhcccccccc
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQ---------RV-RGTA-D--VEAELNDL----------IRASSISKTINH 137 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~---------~~-~~~~-~--~~~~~~~~----------~~~~~~~~~~~~ 137 (371)
.+. .++.||+++. +.++.|....... .. ++.. + .+.+.... ....+.+++++.
T Consensus 170 ~~~~~~~~~~~~~~---~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (485)
T TIGR00711 170 VVVAFFILPRDKPA---ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPL 246 (485)
T ss_pred HHHHHHHcCCcccc---ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 655 4556765431 1111221111000 00 0000 0 00000000 000000011111
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCch
Q 017485 138 PFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRK 216 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 216 (371)
...+.++++. ++...+..+......+....+.|.++++ +|.++.+.+ ....+..++.+++.++.|++.||++||
T Consensus 247 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~ 321 (485)
T TIGR00711 247 VDLRLFKYRN----FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAG-LHILPVGLAPMLSSPIAGRMGDKIDPR 321 (485)
T ss_pred cCHHHHcCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcH
Confidence 1122333332 2223333334444556667788988865 799998888 888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHH
Q 017485 217 ILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVA 296 (371)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 296 (371)
+.+..+..+..++...+.... .+..+.+.......+.+++.+....+.. ....+..|++.|+++.|+.+.
T Consensus 322 ~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 391 (485)
T TIGR00711 322 KLVTIGLILYAVGFYWRAFTF---------TPDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNF 391 (485)
T ss_pred HHHHHHHHHHHHHHHHHhccC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHH
Confidence 998888777766655544211 0112223333334455555544443443 333577799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 017485 297 VCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~ 316 (371)
...+++.+++.+.+.+.++.
T Consensus 392 ~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 392 TRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-22 Score=173.08 Aligned_cols=280 Identities=13% Similarity=0.059 Sum_probs=178.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|..+++.+++.+.+. .+||+.|++.++..++.
T Consensus 110 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~ 185 (408)
T PRK09874 110 FLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVFFITASVLFLC 185 (408)
T ss_pred HHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHH
Confidence 5678999999854 5678888999999999999999999999999999999999887664 45999999998877666
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .+++||.++.. ++ .++ .+.+ ...+.++++. .........+
T Consensus 186 ~~~~~~~~~~~~~~~---~~-~~~---------------~~~~--------------~~~~~~~~~~---~~~~~~~~~~ 229 (408)
T PRK09874 186 FLVTLFCIRENFQPV---SK-KEM---------------LHMR--------------EVVTSLKNPK---LVLSLFVTTL 229 (408)
T ss_pred HHHHHHHhccCcccc---cc-hhh---------------hHHH--------------HHHHhCcCCc---hHHHHHHHHH
Confidence 555 45566653210 00 000 0000 0011111211 1111111111
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchh----HHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESA----SLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
...........+.|.+..+.+.+..+ .+ .......++.+++.+..|++.||++||+.+..+..+..++.+.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T PRK09874 230 IIQVATGSIAPILTLYVRELAGNVSNIAFISG-MIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV 308 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh
Confidence 11122233445566666554433322 22 44455677888889999999999999999888776665554443332
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
++.+...+...+.+.+.+... +....+..+..|++.|++.+++.+....++..++|.+.+.+.+..
T Consensus 309 -------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~ 374 (408)
T PRK09874 309 -------------QTPLQLGILRFLLGAADGALL-PAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY 374 (408)
T ss_pred -------------ccHHHHHHHHHHHHhhhHhhH-HHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 223333444444444444332 333345567778899999999999999999999999999999888
Q ss_pred ccchhhHHHHHHHHHHHHHH
Q 017485 317 KAGIFFFFGGWVIVMTTFMH 336 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~ 336 (371)
++...+...++..+.+.+..
T Consensus 375 g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 375 GFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 87655555555444444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-23 Score=165.91 Aligned_cols=288 Identities=18% Similarity=0.139 Sum_probs=206.3
Q ss_pred CchhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 1 ~l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
++++.+++.|++ |+.+.+...++++|+|++++|.++|+.. ..++|..+...++..+....+.-.||....+..++.++
T Consensus 107 ~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v 184 (417)
T COG2223 107 QLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184 (417)
T ss_pred HHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 367899999997 7788999999999999999999999999 88888888877776665532211299999888888777
Q ss_pred HHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHH
Q 017485 81 LTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPF 159 (371)
Q Consensus 81 ~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (371)
..+. ++.+.|.|......++ ..+.+++..+ +++..|.+.+.+
T Consensus 185 ~~v~~~~~~~d~p~~r~~~~~---------------------------------~~~~~~~~v~----~~~~~W~lsllY 227 (417)
T COG2223 185 AAVLAWLGMNDVPEHRASVKP---------------------------------QLPAQLKAVF----SNKDTWLLSLLY 227 (417)
T ss_pred HHHHHHHHhCCChhhhccccc---------------------------------cchhHHHHHh----cCcchHHHHHHH
Confidence 6666 5566666642111100 0001223333 334467788888
Q ss_pred HHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
+..+.++..+..++|.++ +++|.+..+++ .......+.+.+..+++|+++||+|.++++......++++.........
T Consensus 228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag-~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~ 306 (417)
T COG2223 228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAG-LIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT 306 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhHH-HHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc
Confidence 888899999999999999 66999999998 7788888889999999999999999999999888888887776665421
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK- 317 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 317 (371)
. . ....+.............+.+.+.... +-++...+|. +-|.+.|+..+.+.+|++.-|...+...+.++
T Consensus 307 ~---~---~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~ 378 (417)
T COG2223 307 G---F---GHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS 378 (417)
T ss_pred c---c---ccCcchHHHHHHHHHHHHHhccCcchh-eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence 0 0 001223344444444555555555444 5666788775 56888999999999999999999999999988
Q ss_pred cch-hhHHHHHHHHHHHHHH
Q 017485 318 AGI-FFFFGGWVIVMTTFMH 336 (371)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~~ 336 (371)
+.. ++.+..+.+++.+..+
T Consensus 379 ~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 379 YTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 433 3333333333333333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=167.73 Aligned_cols=258 Identities=17% Similarity=0.157 Sum_probs=165.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++.+++.+.+..+|..+++.+++.+.+. .+||+.|++.+++.++.
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999998877664 46999999988877766
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .+++||+++. +++++.+ .+ +...++++.++++. .+...+..+
T Consensus 159 ~~~~~~~~~~~~~~---~~~~~~~-------------~~--------------~~~~~~~~~~~~~~----~~~~~~~~~ 204 (377)
T PRK11102 159 AALVFFFIPETLPK---ERRQPFH-------------LR--------------TTIRNFASLFRHKR----VLGYMLASG 204 (377)
T ss_pred HHHHHHhCCccCcc---cccCCCC-------------hH--------------HHHHHHHHHHcChH----HHHHHHHHH
Confidence 555 5567776421 0000000 00 00112223333221 222222333
Q ss_pred HHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
....+.+.+..+.|.++ +..|.++.+.+ .......++.+++.++.+++.||+|||+.+..+..+..+..+.+.....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~- 282 (377)
T PRK11102 205 FSFAGMFSFLTAGPFVYIELNGVSPQNFG-YYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL- 282 (377)
T ss_pred HHHHHHHHHHHcCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33344455555666666 55899988888 7888889999999999999999999999988877665444333222210
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHH-HHHHHHHHH
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL-VFIFFTAQT 308 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~ 308 (371)
.+...+...+...++..+.+... +....+..|..| +.++++.++.+.... ++..+++.+
T Consensus 283 --------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 283 --------LDLGFWALVVGVAAFVGCVSMIS-SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred --------HhhhHHHHHHHHHHHHHHHHHhh-HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 00112222222223333222222 222234467666 788999998877654 444455444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=174.25 Aligned_cols=261 Identities=20% Similarity=0.310 Sum_probs=181.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+. .+||+.|++.+++.++.
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~~~~~~~~~~~~~~~~~ 164 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY---FGWRWAFLISAILSLIA 164 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---CHHCCHHHHHHHHHHHH
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc---cccccccccccchhhhh
Confidence 578999999999999999999999999999999999999999999999999999988754 45999999999998887
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccc-hhhhhhhccchhHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINH-PFKKIIQRKYRPQLVMAILIPF 159 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 159 (371)
.++ ..+++++|+....+++++++ +++++... .++..++++.. +......
T Consensus 165 ~il~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 215 (352)
T PF07690_consen 165 AILFILFLPEPPPPRERESPKESE-------------------------SKKPKPLKPGFKSLFKNPVL----WILLIAF 215 (352)
T ss_dssp HHHHHCCC---STTTT--SSTTTT---------------------------HHHCCCH-CTHHHHHHCC----HHHHHHH
T ss_pred hhhHhhhhhhcccccccccccccc-------------------------cccccccccccccccccchh----hhhhhhh
Confidence 764 34555544311111110000 00000111 23444333322 2223333
Q ss_pred HHHhhchhhhHhhHHHH-HHHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVL-LRTLKLS-ESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIM 237 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 237 (371)
+...........+.|.+ .+++|.+ ..+.+ .......+..+++.++.+++.||+++|+..........+....+....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
T PF07690_consen 216 FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAG-LLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLP 294 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSH
T ss_pred hHHHHHHHHhhcccchhhhhccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555678888988 4788988 67777 778888899999999999999999998887776666655555444331
Q ss_pred HhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHH
Q 017485 238 AAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
. .++....+....+.+.+.+.. .+....+..|..|+++|+++.|+.+....+++.++|
T Consensus 295 ~----------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 295 F----------SSSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp H----------HCHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 1 112333444445555554433 445567778999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=167.97 Aligned_cols=258 Identities=15% Similarity=0.180 Sum_probs=162.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++..++.+....+|..++|.+++.+.+. .+||+.|++.++..++.
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~---~g~~~~~~~~~~~~~i~ 170 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK---FPWQSLFYTMAAMGILV 170 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cChHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999998876653 46999999998877766
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .+++||+++. +++ .++ .. ....++.++++....... ...
T Consensus 171 ~~~~~~~~~~~~~~---~~~-~~~---------------~~--------------~~~~~~~~~~~~~~~~~~----~~~ 213 (392)
T PRK10473 171 LLLSLFILKETRPA---RAP-AAS---------------SK--------------PRENSESLLNRFFLSRLV----ITT 213 (392)
T ss_pred HHHHHHHcCCCCCc---ccC-Ccc---------------ch--------------HHHHHHHHhCHHHHHHHH----HHH
Confidence 655 5567776421 000 000 00 001112222221111111 111
Q ss_pred HHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
........+..+.|.++ +++|.+..+.+ .......++.+++.++.+++.||+|||+.+..+..+..++.+.+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--- 289 (392)
T PRK10473 214 LSVTVILTFVNTSPVLLMEQMGFSRGEYA-IIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS--- 289 (392)
T ss_pred HHHHHHHHHHHhCHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH---
Confidence 11122233444556665 56798888877 77788889999999999999999999999888887776666555443
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
...+.......+...+.+.+... ....+..|.+.|+ +.......++..+++.+.+.+.+..++.
T Consensus 290 ----------~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 290 ----------PSHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11222222223333333322221 1223444544443 3444445566666677777777666644
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=168.62 Aligned_cols=258 Identities=13% Similarity=0.116 Sum_probs=168.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+|+.+++.+.+ ++||+.|++.++..++.
T Consensus 102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~ 177 (400)
T PRK11646 102 LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLA 177 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHH
Confidence 56789999999998899999999999999999999999999999999999999988863 46999999988776665
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .++.||.+. ++. .++ .+.++++.++++. ++...+..+
T Consensus 178 ~i~~~~~~~~~~~----~~~-~~~------------------------------~~~~~~~~~~~~~----~~~~~~~~~ 218 (400)
T PRK11646 178 AAFNAWLLPAYKL----STV-RTP------------------------------VREGMTRVLRDKR----FVTYVLTLT 218 (400)
T ss_pred HHHHHHhCCcccc----ccc-chh------------------------------hHHHHHHHHcCch----HHHHHHHHH
Confidence 544 445554211 000 000 0112333333322 111112222
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVD-KLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
...........+.|.+.++.+.++.+.+ .......+....+....+++.| |++.++.+..+.++..++...+...
T Consensus 219 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--- 294 (400)
T PRK11646 219 GYYMLAVQVMLMLPIMVNDIAGSPSAVK-WMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--- 294 (400)
T ss_pred HHHHHHHHHHHhhhhhHHhhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---
Confidence 2122222344578888887766766666 5666666655555544555555 5665666666666555555444332
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
++.+.......+++.+.+.. .|....+..|..|++.|+++.|+.+....++..++|.+.|.+.++.+
T Consensus 295 ----------~~~~~~~~~~~l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 295 ----------SNLQQLFTLICLFYIGSIIA-EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHH-HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 22233333333344443322 24444667899999999999999999999999999999999998753
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-21 Score=165.10 Aligned_cols=280 Identities=11% Similarity=0.029 Sum_probs=180.1
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILT 82 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~ 82 (371)
++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+...++..
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAA 167 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999988763 37877777766555555
Q ss_pred HhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHH
Q 017485 83 VGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQ 162 (371)
Q Consensus 83 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (371)
+....+||+|+.. +++ +++..+. .++. +...+.+++++..+..++...+..
T Consensus 168 ~~~~~l~~~~~~~--~~~-~~~~~~~-------------~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~--- 218 (393)
T PRK11195 168 LFNLFIPRLGARR--PGQ-SWNPIAL-------------LRDF----------FHACRVLWRDKLGRFSLAGTTLFW--- 218 (393)
T ss_pred HHHhcCCCCcccc--ccc-CCCHHHH-------------HHHH----------HHHHHHHHhCchhHHHHHHHHHHH---
Confidence 5566788876421 101 0000000 0000 011233343333222222221111
Q ss_pred hhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 163 VTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 163 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
.......+..|.+. +.+|.++.+.+ .......++.+++++..+++.||.++|+.+..+.. ..+....+...
T Consensus 219 -~~~~~~~~~~~~~~~~~lg~s~~~~G-~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~----- 290 (393)
T PRK11195 219 -GAGATLRFLVLAWAPVALGITLNQPA-YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ----- 290 (393)
T ss_pred -HHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH-----
Confidence 22233344455555 44788888888 88889999999999999999999998887766642 22222222211
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEI-RSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGI 320 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
++.+.......+.+.+.+....+.. +...|..|++. +|++.++.+...+++..++..+.+.+ +..+-..
T Consensus 291 --------~~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 360 (393)
T PRK11195 291 --------HSLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPV 360 (393)
T ss_pred --------hHHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCH
Confidence 2233334444455555554444443 44567655554 79999999999999999999888855 5666554
Q ss_pred hhHHHHHHHHHHH
Q 017485 321 FFFFGGWVIVMTT 333 (371)
Q Consensus 321 ~~~~~~~~~~~~~ 333 (371)
.+.+.+++.+...
T Consensus 361 ~~~~~~~~~~~~~ 373 (393)
T PRK11195 361 VAVIVGFGLLVAL 373 (393)
T ss_pred HHHHHHHHHHHHH
Confidence 4555444444433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=165.81 Aligned_cols=271 Identities=14% Similarity=0.053 Sum_probs=192.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|.+.+...|...++..|+ +++|++..+....+.++|.++++++++.+.+. +|||..|++..+..++.
T Consensus 97 l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~~~~~ 171 (382)
T TIGR00902 97 LFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAGLAFM 171 (382)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHH
Confidence 46789999999888899988887765 47899999999999999999999998888775 46999998876553333
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+.. .++|+++ +++ .++ +++++...+.++.+|++ .++...+..+.
T Consensus 172 ~~~~-~~~~~~~----~~~-~~~-------------------------~~~~~~~~~~~~~l~~~----~~~~~l~~~~l 216 (382)
T TIGR00902 172 LIGF-LIKPTIP----PKD-AIP-------------------------EDESQGDSAFIALLKNP----MNLRFLAAVCL 216 (382)
T ss_pred HHHH-HcCCCCC----CCc-ccc-------------------------ccccccchhHHHHHcCh----HHHHHHHHHHH
Confidence 3323 3344321 000 000 00000011233444332 23334444444
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
.......+..+.|.++++.|.+....+ .......++.+++.++.+++.||+|+|+.+.++.+...+....+...
T Consensus 217 ~~~~~~~~~~~~~~~l~~~g~s~~~~g-~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~----- 290 (382)
T TIGR00902 217 IQGAHAAYYGFSAIYWQAAGISASATG-LLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI----- 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-----
Confidence 445566677788888888999999998 77778899999999999999999999999999888888887766553
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHhhcccch
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVA-VCLVFIFFTAQTFLAMLCHFKAGI 320 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
++.+..+....+.+..++..... ...++.+. |++.|+++.++.+. ...++..+++.+.|.+.|+.+...
T Consensus 291 --------~~~~~~~~~q~l~g~~~~~~~~~-~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~ 360 (382)
T TIGR00902 291 --------EAFPLIFLLQILHCGTFAVCHLA-AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGT 360 (382)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44555555666666666655443 45677777 99999999999874 467899999999999999988655
Q ss_pred hhHHHHHH
Q 017485 321 FFFFGGWV 328 (371)
Q Consensus 321 ~~~~~~~~ 328 (371)
++..+++.
T Consensus 361 ~~~~~~~~ 368 (382)
T TIGR00902 361 FVFMAIIA 368 (382)
T ss_pred HHHHHHHH
Confidence 55544433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-21 Score=162.78 Aligned_cols=270 Identities=12% Similarity=0.064 Sum_probs=171.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHH-H
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS-I 80 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~-~ 80 (371)
++++|+++|++.+...+.....+.|..++++|+++++.+..+..+|..+|+.+++.+.+... |+..+ ..+.... +
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~---~~~~~-~~~~~~~~~ 172 (381)
T PRK03633 97 WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM---SVLPW-VTGLVLAAI 172 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---chHHH-HHHHHHHHH
Confidence 56899999999999999988888999999999999999999999999999999888765321 22222 2222111 1
Q ss_pred HHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 81 LTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 81 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
..+.....+|+++ + ++++.+.++.++++..+ ......+
T Consensus 173 ~~~~~~~~~~~~~------~--------------------------------~~~~~~~~~~~~~~~~~----~~~~~~~ 210 (381)
T PRK03633 173 LPLLFTRILNQQA------E--------------------------------NHDSTSIWPMLKLRQAR----LGVNGCI 210 (381)
T ss_pred HHHHHhcccCCCC------C--------------------------------CCCCCCHHHHHHhcchH----HHHHHHH
Confidence 1111212222110 0 00011223333333211 1111111
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
.....+.....+.|.+.++.|.+....+ .......++.+++.+..+++.||+++|+.+..+.....++...+...
T Consensus 211 ~~~~~~~~~~~~lp~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~---- 285 (381)
T PRK03633 211 ISGIVLGSLYGLMPLYLNHQGMSDASIG-FWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ---- 285 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh----
Confidence 1222233445678988888899888887 67778888999999999999999999998887766666554332210
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGI 320 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
. . ......+.+.+.. ...|....+..|..|+++++...+..+....+|..++|.+.|.+.++.++..
T Consensus 286 ---------~-~--~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~ 352 (381)
T PRK03633 286 ---------A-A--MAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNL 352 (381)
T ss_pred ---------H-H--HHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 1 1 1112222222222 2335555666788888888888888888889999999999999999888655
Q ss_pred hhHHHHHHHHHHHHH
Q 017485 321 FFFFGGWVIVMTTFM 335 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~ 335 (371)
.+...+.+.+...+.
T Consensus 353 ~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 353 LFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544444444333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=165.66 Aligned_cols=262 Identities=17% Similarity=0.125 Sum_probs=174.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|++++++..+.......+|..+++.+++.+.+. .|||+.|++.+++.++.
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~~ 173 (401)
T PRK11043 97 LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLLL 173 (401)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Confidence 567899999999888888889999999999999999998888999999999998887764 46999999998887777
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+..++++|+++. + + .++ .+.++++.++++..+. ..+....
T Consensus 174 ~~~~~~~~~~~~~---~-~-~~~------------------------------~~~~~~~~~~~~~~~~----~~~~~~~ 214 (401)
T PRK11043 174 ILPTLRLKPSKKA---R-K-QSQ------------------------------DALTFKQLLKSKTYLG----NVLIFAA 214 (401)
T ss_pred HHHHHHcCCCCCc---c-c-cch------------------------------HHHHHHHHHcChhHHH----HHHHHHH
Confidence 6665556655420 0 0 000 0112333333322111 1111222
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
....++.+..+.|.+.++.|++..+.+ +......++.+++.++.+++.||+++|+..........++...+......
T Consensus 215 ~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 291 (401)
T PRK11043 215 CSAAFFAWLTGSPFILEQMGYSPADIG-LSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL-- 291 (401)
T ss_pred HHHHHHHHHHHhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 223344556678888888999988888 77777788889999999999999999987765555544443332222110
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
.....+.......+.+.+.+... +.......|..| +.++++.|+.+..+..++..++.+.+.+.+..
T Consensus 292 ------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 292 ------SHPSLVPLLIPFCVMAAANGAIY-PIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred ------ccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 00122223333334444443332 333344446655 57999999999999999999999988887643
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=162.05 Aligned_cols=289 Identities=13% Similarity=0.099 Sum_probs=177.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++..++.++..+...+...+++.|+.|+++|+++.++...+..+|.++++.++..+.+.. +|||..|++.++..++.
T Consensus 97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~ 174 (402)
T PRK11902 97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGWGNTYLLMAGLMLAG 174 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCHHHHHHHHHHHHHHH
Confidence 3456677788888888999999999999999999999999999999999999887776532 36999999988887766
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+..+++||+++. +++ .++.+ ++.+.+++++++++..+..+....+....
T Consensus 175 ~l~~~~~~e~~~~---~~~-~~~~~--------------------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~ 224 (402)
T PRK11902 175 ALTTLWAPEPEVP---ARP-PRSLG--------------------------EAVVGPLRDFFSRRGAWALLLLIVLYKLG 224 (402)
T ss_pred HHHHHhcCCCccc---ccc-cchhH--------------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhH
Confidence 6656667776531 000 00000 00012344555554433322222221111
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVV-TGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
. ........+.+.+++|.++.+.+ +.... ..++.+++.++++++.||+++|+.+..+..+..+..+.+.....
T Consensus 225 ~---~~~~~~~~~~l~~~~G~~~~~~g-~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~-- 298 (402)
T PRK11902 225 D---AFAGSLSTTFLIRGAGFSAGEVG-IVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV-- 298 (402)
T ss_pred H---HHHHHHHHHHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 1 11112233445567899988888 55544 44568999999999999999999877666665554433322211
Q ss_pred hCCCCCCchhhHHHHHHHHH----HHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 241 LGDHGGFSEGYAYLILVLVC----VYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
..++.+....... ..+...+ ...+....++.+.+|.+.+ ++.+....++...++.+.|.+.|..
T Consensus 299 -------~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~ 366 (402)
T PRK11902 299 -------TPKHLWTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAY 366 (402)
T ss_pred -------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0012232222222 2222222 1223334565677675544 4555555667766677899999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHhcc
Q 017485 317 KAGIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
|+...+...+++.+.+++.....+
T Consensus 367 G~~~~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 367 GWPGFYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHh
Confidence 987777766666655555544443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=160.93 Aligned_cols=275 Identities=13% Similarity=0.068 Sum_probs=171.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+...+....++.|++|+++|++.+++...+..+|..+++.+++.+.+. .|||+.|++.++..++.
T Consensus 107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 107 FLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Confidence 578999999999887788888999999999999999999999999999999999887654 46999999999887777
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. ++++||+++. ++++.+. + .....+++.+++ +.++...+..+
T Consensus 184 ~~~~~~~lp~~~~~---~~~~~~~-~---------------------------~~~~~~~~ll~~----~~~~~~~l~~~ 228 (413)
T PRK15403 184 FVGLLLAMPETVKR---GAVPFSA-K---------------------------SVLRDFRNVFRN----RLFLTGAATLS 228 (413)
T ss_pred HHHHHHhCCCCccc---cCCCCCh-H---------------------------HHHHHHHHHHcC----HHHHHHHHHHH
Confidence 665 5567887531 1110000 0 001122333333 33444444444
Q ss_pred HHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
......+.+..+.|.++++ .|.++.+.+ +.......+.++++.+.+.+.++..+++.......+..++..++......
T Consensus 229 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~g-l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~ 307 (413)
T PRK15403 229 LSYIPMMSWVAVSPVILIDAGGMTTSQFA-WTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL 307 (413)
T ss_pred HHHHHHHHHHHhChHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677778988865 588988888 77777777888888888877655444444333222333332222221100
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
. + ++.+.......+++.+.+....+. ... +..-....+|++.++.+.....+...++...+++.+.....
T Consensus 308 --~-----~-~~~~~~~~~~~l~~~G~~~~~p~~-~~~-al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~ 377 (413)
T PRK15403 308 --W-----P-HVWLWSVLGTSLYAFGIGLIFPTL-FRF-TLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRL 377 (413)
T ss_pred --c-----c-ccHHHHHHHHHHHHHHHHHHhHHH-HHH-HhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 0 0 112223344444555544333222 211 11112234799999999999999999998888877664433
Q ss_pred hhhHHH
Q 017485 320 IFFFFG 325 (371)
Q Consensus 320 ~~~~~~ 325 (371)
.+....
T Consensus 378 ~~~~~~ 383 (413)
T PRK15403 378 PFHLLA 383 (413)
T ss_pred HHHHHH
Confidence 333333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=159.82 Aligned_cols=259 Identities=15% Similarity=0.108 Sum_probs=172.1
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+++.+.+..+ .+||+.|.+.++..++.
T Consensus 90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 90 LFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHH
Confidence 4678999999999988888889999996 689999999999999999999988877765322 24999998776654433
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.. .++||.++ +++ + +++..+...++.+++ +.++...+..+.
T Consensus 168 ~~--~~~~~~~~----~~~-~----------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 208 (355)
T TIGR00896 168 LL--AWIPQVRR----RVA-A----------------------------NQTTTRLTPVRIWRS----PLAWQVTVFFGL 208 (355)
T ss_pred HH--HHhhhhcc----ccC-C----------------------------CCCCCCCCCchhhcC----HhHHHHHHHHHH
Confidence 22 23344321 000 0 000001122333332 223333333344
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLG-RKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-rr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
....++....+.|.++++.|.+..+.+ ...+...++.+++.++.|++.||++ ||+.+..+..+..++.+.+....
T Consensus 209 ~~~~~~~~~~~lp~~~~~~g~~~~~~g-~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--- 284 (355)
T TIGR00896 209 QSGLYYSLIGWLPAILISHGASAATAG-SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--- 284 (355)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh---
Confidence 444556677889999988999988888 8888899999999999999999994 56566666666666555444321
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeec-ccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPS-EIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
.... . ....+++.+.+... +....... +..+++.++...++.+..++++..++|.+.|.+.|+.+
T Consensus 285 ---------~~~~-~-~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 285 ---------MHGL-W-AWALVLGLGQGGAF-PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred ---------hhHH-H-HHHHHHHHhhhhHh-HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 1 12334444443332 23223333 34456777899999999999999999999999998876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-21 Score=166.80 Aligned_cols=268 Identities=15% Similarity=0.142 Sum_probs=168.3
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhC-CCCcccchhhHHHHHHHHHHHHHHHHhhhhccc----CCCcchHHHHhhhHHH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMA-PPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI----KGGWGWRISLAMAAAP 77 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~Wr~~f~~~~~~ 77 (371)
++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+...+... .+..+||+.+.+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 45677778887777777788888987 468999999999888888877776654433321 1235899999999988
Q ss_pred HHHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 78 ASILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 78 ~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
+++..+. .+++||.++. .+ ++ ++.+.+.++.++...+++.++...
T Consensus 183 ~~~~~~~~~~~~~e~~~~----~~--~~----------------------------~~~~~~~~~~~~~l~~~~~~~~~~ 228 (437)
T TIGR00792 183 GVVSLIICFFGTKERYSE----IP--KN----------------------------IEKKLSLKQIFKALFKNDQLLILC 228 (437)
T ss_pred HHHHHHHHHcCCEecCCC----CC--cc----------------------------cccCCCHHHHHHHHhCCHHHHHHH
Confidence 8777665 4566765420 00 00 000111222222222223333333
Q ss_pred HHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
+..+......+....+.+.+.+....+....+ .......++.+++.++.++++||+|+|+.+..+..+..++.+.+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 229 LAYLFYNLAFNIKNGVQVYYFTYVLGDPELFS-YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred HHHHHHHHHHHHHcchhheeEeeecCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333444444445555443222344445 55666789999999999999999999999988877776665544332
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCc-------hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
+ ++.+...+...+.+++.+.. .+..+++.+|..+ ++.+|+..|+.+....++..+++.+.
T Consensus 308 -----------~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~ 374 (437)
T TIGR00792 308 -----------G-SNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV 374 (437)
T ss_pred -----------c-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12233333444444444433 2344556667654 45678999999999999999999999
Q ss_pred HHHHhhccc
Q 017485 310 LAMLCHFKA 318 (371)
Q Consensus 310 ~~~~~~~~~ 318 (371)
+.+.+..|+
T Consensus 375 g~ll~~~G~ 383 (437)
T TIGR00792 375 GLILGIIGY 383 (437)
T ss_pred HHHHHHcCC
Confidence 999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=159.34 Aligned_cols=266 Identities=14% Similarity=0.039 Sum_probs=178.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|++.|++.+...|...+++.++ .++|++..+....+.++|.++||++++.+.+. +|||..|++.++..++.
T Consensus 97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHH
Confidence 45789999999888889888887877 45788889999999999999999999988764 45999998887655544
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+...+.||.++ +++ +++ ..++...++++.++++. ++...+..+.
T Consensus 172 ~~~~~~~~~~~~----~~~-~~~--------------------------~~~~~~~~~~~i~~~~~----~~~~~~~~~l 216 (382)
T PRK11128 172 LLGQLLRPTIMP----QGE-SRQ--------------------------QESAGWPAWKALLKEPT----VWRFLLCVSL 216 (382)
T ss_pred HHHHHccCCCCC----ccc-ccc--------------------------ccccccchHHHHHcChh----HHHHHHHHHH
Confidence 444444555321 000 000 00001223455554433 3333332332
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
..........+.|.+.++.|.+..+.+ .......++.++..++.+++.||+++|+.+..+.+...+....+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~----- 290 (382)
T PRK11128 217 LQGSHAAYYGFSAIYWQAAGYSASTIG-YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST----- 290 (382)
T ss_pred HHHHhHhHHHHHHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 233344555667778888999988888 67777788899999999999999999999888887777765544432
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcccch
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV-CLVFIFFTAQTFLAMLCHFKAGI 320 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
++.+..++..++.+++.+.... ....+..+. +++++++..++.+.. ..++..++|.+.|.+.|..+...
T Consensus 291 --------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~ 360 (382)
T PRK11128 291 --------TALPWLIVIQILHCGTFTVCHL-AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGV 360 (382)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3344455555555555554333 333555565 566678888887644 45677899999999999887644
Q ss_pred hhH
Q 017485 321 FFF 323 (371)
Q Consensus 321 ~~~ 323 (371)
++.
T Consensus 361 ~~~ 363 (382)
T PRK11128 361 FWV 363 (382)
T ss_pred HHH
Confidence 333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=184.38 Aligned_cols=269 Identities=11% Similarity=-0.019 Sum_probs=178.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC------CCcchHHHHhhhH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK------GGWGWRISLAMAA 75 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~Wr~~f~~~~ 75 (371)
++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+++++++.... +..+|++.+.+..
T Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 185 (1146)
T PRK08633 106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL 185 (1146)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999998876541 0113555544444
Q ss_pred HH-HHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHH
Q 017485 76 AP-ASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMA 154 (371)
Q Consensus 76 ~~-~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
+. .++..++.+.+||+|+....+.+ .+. . ...+.....++.+++++. ++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------~-------------~~~~~~~~~~~~l~~~~~----~~~ 236 (1146)
T PRK08633 186 LAVAVLGLIFAYRLPKVPAAAPEVFD--KKK----------Y-------------LFPKLLWRNLKLLRSDRV----LWL 236 (1146)
T ss_pred HHHHHHHHHHHhcCcCCCCCCccccc--ccc----------c-------------ccHHHHHHHHHHHhcCcH----HHH
Confidence 33 33344445667887642111000 000 0 000000112333333322 222
Q ss_pred HHHHHHHHhhchhhhHhhHHHHH-HHhCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLL-RTLKLSES-ASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVI 232 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 232 (371)
..+..+........+..+.|.++ +.+|.+.. ..+ +......++.+++.++.+++.||+++++.+.++.++..++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g-~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 315 (1146)
T PRK08633 237 AIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQ-YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFL 315 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHH
Confidence 33333333333445556677776 56888888 777 7888889999999999999999999998888777766666555
Q ss_pred HHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017485 233 IGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAM 312 (371)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (371)
+... .+.+..++..++++++.+....+ ..+++.+..|++.|++++|+.+.+..++..+++.+.+.+
T Consensus 316 ~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 316 LPTA-------------PSLASVLVLFFLFGFSAGLFIVP-LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred HHHh-------------hhHHHHHHHHHHHHHHHHHhhHH-HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 23344444455555555444333 346668889999999999999999999887777666554
Q ss_pred Hh
Q 017485 313 LC 314 (371)
Q Consensus 313 ~~ 314 (371)
..
T Consensus 382 ~~ 383 (1146)
T PRK08633 382 SG 383 (1146)
T ss_pred HH
Confidence 43
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=161.82 Aligned_cols=262 Identities=13% Similarity=0.058 Sum_probs=169.0
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCC-----CcchHHHHhhhHHH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKG-----GWGWRISLAMAAAP 77 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~Wr~~f~~~~~~ 77 (371)
....++.|++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+....+ .++||..|++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~ 166 (356)
T TIGR00901 87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL 166 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence 3456677888888889999999999999999999999999999999999999877765433 24599999999988
Q ss_pred HHHHHHhhh-cCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 78 ASILTVGAL-FMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 78 ~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
.++..+..+ ..||+++. +++ .++ +. ++.+.+++++++++..++.. ...
T Consensus 167 ~l~~~~~~~~~~~e~~~~---~~~-~~~----------------~~----------~~~~~~~~~~~~~~~~~~~~-~~~ 215 (356)
T TIGR00901 167 ILPGLLVTLFLAKEPQED---ASV-PKP----------------LT----------QAVLKPIREFFQRKNMIQAL-LLL 215 (356)
T ss_pred HHHHHHHHHHhccCCCcc---ccc-chh----------------HH----------HHHHHHHHHHHHhcCchHHH-HHH
Confidence 777666544 45664320 000 000 00 00012334444433322222 233
Q ss_pred HHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVV-TGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
+..+......+....+.|.++++.|++..+.+ ..... ..+..+++.++++++.||+|||+.+..+.++..+....+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 294 (356)
T TIGR00901 216 LLIVLYKLGDSAATVLTTLFLLDMGFSKEEIA-LVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345556677788888877999998887 55544 44678899999999999999999988877776665544433
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHH
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL 299 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 299 (371)
.... ....+.+....+......++.+++.+... +....+..|.+|+++|++.+|+.+...+
T Consensus 295 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 295 LASN--GHHDGITFPHLLMLFLTITLEAVTGGLGT-VAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHhc--CcccccccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2100 00000000122333333444444444333 4445777999999999999999877654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-22 Score=165.52 Aligned_cols=281 Identities=15% Similarity=0.170 Sum_probs=171.1
Q ss_pred CchhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 1 ~l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+++++|.+.|+|++...|.++++++|.+|.++|++.+++++.+.++|..+|.+++..+.+... .|||.|+..++++++
T Consensus 123 q~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi 200 (493)
T KOG1330|consen 123 QVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVI 200 (493)
T ss_pred HHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHH
Confidence 367899999999999999999999999999999999999999999999999999998887654 399999999999999
Q ss_pred HHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHH
Q 017485 81 LTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPF 159 (371)
Q Consensus 81 ~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (371)
+.++ +++++|.+|- .+ +|.. ++ .+..++....++++. ...+.+.+....+.+
T Consensus 201 ~~~L~~~f~~eP~rg----a~--~~~~-------~~-------------~~~~~~~ts~~kDl~-~l~~~~v~v~~sl~~ 253 (493)
T KOG1330|consen 201 VGLLVFLFVREPERG----AR--DEVD-------GE-------------NKMVKPFTSVWKDLK-VLAKIKVFVLSSLGI 253 (493)
T ss_pred HHHHHHhhccCcccc----cc--cccc-------cC-------------CcCCCCccchHHHHH-HHHccCceeeehHHH
Confidence 8887 6667776541 11 1100 00 000111112222221 111111222222222
Q ss_pred HHHhhchhhhHhhHHHHH----HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCch----HHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVLL----RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRK----ILFLVGGIQMFVSQV 231 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~ 231 (371)
.........+..|.|.+. +-.|++..... +...+...++.+|.+++|.++||+.|+ ....+.-+.+..+..
T Consensus 254 ~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~-ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~ 332 (493)
T KOG1330|consen 254 IAAQFVIGSLSWWAPAFIYYSYELIGFDHNATL-IFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAP 332 (493)
T ss_pred HHHHHhccccchhhhhHHHHHHHHhCCccccch-hhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhh
Confidence 222223334445555544 33566666666 788888999999999999999994321 122222222111111
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHH-HHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFF-TAQTFL 310 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~ 310 (371)
....+...... ....+.+..+++..+........+.+... +..|+.|++.|.++.++...+..+.+-. +|.+.|
T Consensus 333 ~s~~~L~~~~~----~~~~s~~~~~il~~~g~~~~~~~~a~n~~-i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivG 407 (493)
T KOG1330|consen 333 LSIPFLFLFPA----FTSSSMIFGLILFLVGETISWFNWATNNP-IFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVG 407 (493)
T ss_pred HHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhcccccccc-eeeEecCcccccHHHHHHHHHHHHhccCCCcceeh
Confidence 11111000000 01133333333333333333334444443 4479999999999999988877655544 454888
Q ss_pred HHHhhc
Q 017485 311 AMLCHF 316 (371)
Q Consensus 311 ~~~~~~ 316 (371)
.+.++.
T Consensus 408 ilsd~l 413 (493)
T KOG1330|consen 408 ILSDKL 413 (493)
T ss_pred hHHHHh
Confidence 888764
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=183.14 Aligned_cols=279 Identities=12% Similarity=0.016 Sum_probs=186.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|+++|++.+...|...+++.|++|+++|++++++.+.+.++|.++||++++++.... +|++.|+..++..++.
T Consensus 111 l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~---~~~~~~~~~~~~~~~~ 187 (1140)
T PRK06814 111 LFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG---NFVILVALLMGIAVLG 187 (1140)
T ss_pred HHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999987754 5999996665656655
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+..+++|+++.- .++.+.+. ....+ ....++.+.++ +.++...+..+.
T Consensus 188 ~~~~~~~~~~~~~--~~~~~~~~---------------~~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~ 236 (1140)
T PRK06814 188 WLASLFIPKTGNA--APDLKIDR---------------NIIRS----------TITLLKYAKAD----KRIWLAILGISW 236 (1140)
T ss_pred HHHHhhCCCCCCC--CCCCeecc---------------chHHH----------HHHHHHHHhcC----chHHHHHHHHHH
Confidence 5566677766420 00000000 00000 01123333332 334444444444
Q ss_pred HhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 162 QVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
.+.....+..+.|.++++ +|.+....+ +..+...++.++|.++.++++|+..+++.+..+.++..++.+.+.+.....
T Consensus 237 ~~~~~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (1140)
T PRK06814 237 FWLVGAVVLSQLPLLAKETLGGDENVAT-LFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSV 315 (1140)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCchHHHH-HHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccc
Confidence 444445666788888854 788888888 888999999999999999999988877766655555544443333210000
Q ss_pred hCCCC-------CCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017485 241 LGDHG-------GFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAML 313 (371)
Q Consensus 241 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (371)
..... -....+.+...+..++++++.+....+ ..+++.+..|++.||+++|+.+....++..+++.+.+.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 316 PAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVP-LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHH-HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000022334444455555555444433 4567789999999999999999999999999999988887
Q ss_pred hhc
Q 017485 314 CHF 316 (371)
Q Consensus 314 ~~~ 316 (371)
+..
T Consensus 395 ~~~ 397 (1140)
T PRK06814 395 ALG 397 (1140)
T ss_pred Hhc
Confidence 543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=148.61 Aligned_cols=267 Identities=14% Similarity=0.082 Sum_probs=182.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCC-------------CcchH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKG-------------GWGWR 68 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------~~~Wr 68 (371)
++++-++.|.|.+...+.+..++++..|+|++.+.+++.+..+++|..++|.+++.+..... ...||
T Consensus 13 ~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (310)
T TIGR01272 13 FLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVH 92 (310)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999887663210 13699
Q ss_pred HHHhhhHHHHHHHHHhhhc--CCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhcc
Q 017485 69 ISLAMAAAPASILTVGALF--MPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRK 146 (371)
Q Consensus 69 ~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (371)
++|++.+.+.++..+.+.+ +||.++ + .++ + ..+++ ....++.+
T Consensus 93 ~~yl~ia~~~~~~~i~~~~~~~p~~~~------~-~~~--~--------------------~~~~~---~~~~~~~~--- 137 (310)
T TIGR01272 93 TPYLLLAGALAVLAIIFAFLPLPELQE------A-DVA--R--------------------VSSGD---TTQKTSAF--- 137 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCc------c-ccc--c--------------------ccccc---ccchhhHH---
Confidence 9999777665555555434 354321 1 000 0 00000 00001122
Q ss_pred chhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH---hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHH
Q 017485 147 YRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT---LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGG 223 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 223 (371)
+++.++...+..+++.........|.+.|+++ +|.++.+.+ ........+.++|.++.+++.||+++|+.+.++.
T Consensus 138 -~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~-~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~ 215 (310)
T TIGR01272 138 -QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA-HFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA 215 (310)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 23334445566666666677888899999964 588888888 8889999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHH
Q 017485 224 IQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIF 303 (371)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 303 (371)
.+..++..+.... + .........+.+++.+..+ |.......+.+|++ .+++.++. ..+.+|+.
T Consensus 216 ~l~~~~~~l~~~~-------------~-~~~~~~~~~l~g~~~s~i~-P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~ 278 (310)
T TIGR01272 216 FLAVLLSIGAALT-------------H-GYVAMWFVLALGLFNSIMF-PTIFSLALNALGRH-TSQGSGIL-CLAIVGGA 278 (310)
T ss_pred HHHHHHHHHHHHc-------------C-CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhh-hhhhHHHH-HHHHhcch
Confidence 6666554333221 1 1112223334555555444 34345555666643 46666774 67789999
Q ss_pred HHHHHHHHHHhhcccchhh
Q 017485 304 FTAQTFLAMLCHFKAGIFF 322 (371)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~ 322 (371)
+.|.+.|.+.|..+....+
T Consensus 279 i~P~l~G~lad~~g~~~a~ 297 (310)
T TIGR01272 279 IVPLLQGSLADCLGIQLAF 297 (310)
T ss_pred HHHHHHHHHHHhccchHHH
Confidence 9999999999987754333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=156.53 Aligned_cols=270 Identities=9% Similarity=0.006 Sum_probs=169.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhc-ccC-----------------C
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQ-KIK-----------------G 63 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~-----------------~ 63 (371)
++++|+++|+|.|...+....++.|+.|+++|.+.+++.+..+.+|..+++.++..+. ... +
T Consensus 120 ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~ 199 (438)
T PRK10133 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSA 199 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHH
Confidence 5789999999999999999999999887777777899999999999999998876543 110 0
Q ss_pred -----CcchHHHHhhhH-HHHHHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhccccccc
Q 017485 64 -----GWGWRISLAMAA-APASILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTIN 136 (371)
Q Consensus 64 -----~~~Wr~~f~~~~-~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (371)
..+||++|+... +..++..+. ....||.|. +++ .+ +..++..
T Consensus 200 w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~-~~--------------------------~~~~~~~ 248 (438)
T PRK10133 200 YKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH-SD--------------------------AKQGSFS 248 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc-cc--------------------------ccccchh
Confidence 025777776433 333333332 333454321 000 00 0000001
Q ss_pred chhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHH-H-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 017485 137 HPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLL-R-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLG 214 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 214 (371)
.+.+++++++..+. ..+..++..........|.+.++ + .+|.++.+.+ .......++.++|+++++++.||++
T Consensus 249 ~~~~~ll~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag-~~~~~~~~~~~vG~~~~g~l~~r~g 323 (438)
T PRK10133 249 ASLSRLARIRHWRW----AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_pred hhHHHHHhCchHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12334444333222 22222333344444555677664 4 4799999998 8899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHH
Q 017485 215 RKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSIT 294 (371)
Q Consensus 215 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 294 (371)
+|+++..+..+..+.+...... ... ..+....+.+++.+..+ |..+....|..|+ +.+++.++.
T Consensus 324 ~~~~l~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~l~glg~~~i~-P~~~s~a~~~~~~-~~~~as~l~ 387 (438)
T PRK10133 324 PHKVLAAYALIAMALCLISAFA-------------GGH-VGLIALTLCSAFMSIQY-PTIFSLGIKNLGQ-DTKYGSSFI 387 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------------CCh-HHHHHHHHHHHHHHHHH-HHHHHHHHcccch-hhccchhHH
Confidence 9999888766665544333221 111 22334455555655444 4445666677664 467777877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-cchhhHH
Q 017485 295 VAVCLVFIFFTAQTFLAMLCHFK-AGIFFFF 324 (371)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 324 (371)
. ...+++.++|.+.|.+.+..+ ....++.
T Consensus 388 ~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v 417 (438)
T PRK10133 388 V-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_pred h-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence 5 455788999999999988876 3333433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-20 Score=159.24 Aligned_cols=262 Identities=11% Similarity=0.033 Sum_probs=155.7
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHHhhhcC-CCChhhHHhhCCChHHHHHHH
Q 017485 31 KHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTVGALFM-PETPNSIIQRSNDPQKAKRML 109 (371)
Q Consensus 31 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~ 109 (371)
+++++..+......++|..+++++++.+.+ .+|++.|++.+++.++..+..+++ ||.|+....+ + .++
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~----- 205 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-N-ALG----- 205 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhcccccccchhhhc-c-chh-----
Confidence 467888888888999999999999888765 359999999888877766665554 3332200000 0 000
Q ss_pred HHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH----hCCCch
Q 017485 110 QRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT----LKLSES 185 (371)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~ 185 (371)
.++++......++.++++..+...+ ..+.....+.....+.|.++.+ .+.+..
T Consensus 206 -------------------~~~~~~~~~~~~~~l~~~~~~~l~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (420)
T PRK09528 206 -------------------ANASAVSLKDALALLKLPKFWFLVL----YVIGVACFYDVFDQQFPNFFASFFATPEQGTR 262 (420)
T ss_pred -------------------cccccccHHHHHHHccCCCeEeehH----HHHHHHHHHHHHHHHHHHHHHHHHhccCcchH
Confidence 0000000111223333332221111 1111112223333345555533 244545
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhh
Q 017485 186 ASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAG 265 (371)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (371)
..+ .......+...++.++.|++.||+|+|+.+..+.++..+....+.+. ++.+.......+.+.+
T Consensus 263 ~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------------~~~~~~~~~~~l~g~~ 328 (420)
T PRK09528 263 VFG-YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------------TGPLEVSILKLLHAFE 328 (420)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------------ccHHHHHHHHHHHHHH
Confidence 556 66777778888999999999999999999888877777766555442 2233333333333333
Q ss_pred hccccccceeeeecccCchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHH-HHHHHHHHHhccC
Q 017485 266 FSYSWGPLAWLVPSEIFPLEIRSAGQSI-TVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWV-IVMTTFMHLFLPE 341 (371)
Q Consensus 266 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 341 (371)
..... +....+..|.+|++.|++..+. .+....++..+++.+.|.+.|..|+...+...+++ .+..++.....++
T Consensus 329 ~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 329 VPFLL-VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHH-HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 32222 2333566788899999988766 56778899999999999999988876555544333 3344444444443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=155.38 Aligned_cols=259 Identities=12% Similarity=0.042 Sum_probs=169.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-------------------
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK------------------- 62 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------------- 62 (371)
+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+....
T Consensus 97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (410)
T TIGR00885 97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSA 176 (410)
T ss_pred HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999987664221
Q ss_pred ----CCcchHHHHhhhHHHHHHHHHhhhc--CCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhccccccc
Q 017485 63 ----GGWGWRISLAMAAAPASILTVGALF--MPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTIN 136 (371)
Q Consensus 63 ----~~~~Wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (371)
+..+||++|++.+++.++..+...+ .||.++ ++ ++ +.+..
T Consensus 177 ~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~--~~---------------------------~~~~~ 222 (410)
T TIGR00885 177 IKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD--AK---------------------------QISFS 222 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc--cc---------------------------cccch
Confidence 1136999999988877665544333 343211 00 00 00001
Q ss_pred chhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 017485 137 HPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLK--LSESASLLLSAVVTGGIGTVLTIISMILVDKLG 214 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 214 (371)
.+.++.++++. ++...+..++..........+++.+.++.+ .+..... ...........+|.++++++.||++
T Consensus 223 ~~~~~~~~~~~----~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~-~~~~~~~~~~~vGR~~~~~l~~r~~ 297 (410)
T TIGR00885 223 ASLSRLARIRH----YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAA-NYNIGAMVIFFISRFIGTWLISYLA 297 (410)
T ss_pred hhHHHHHhChh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12223333322 222333333344444456677888876543 3333334 3455555778999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHH
Q 017485 215 RKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSIT 294 (371)
Q Consensus 215 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 294 (371)
+|+.+.+..++..+..++.... + .......+.+.+++.+..+ |..+....+..+++.+..+.++.
T Consensus 298 ~~~~l~i~~~~~~~~~ll~~~~-------------~-~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~ 362 (410)
T TIGR00885 298 AHKVLMAYAIIGMALCLGSIFA-------------G-GHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLV 362 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------------C-ChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHH
Confidence 9998887777766665555442 1 1122344444555555555 56567777887876655455554
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 017485 295 VAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
... +|+.+.|++.|.+.|..
T Consensus 363 ~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 363 MAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHH--hccchHHHHHHHHHHHh
Confidence 443 99999999999999964
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=155.10 Aligned_cols=267 Identities=10% Similarity=0.008 Sum_probs=170.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++|++.|.+.+...+...++..|..|+++|++..++.....++|.+++|.+++.+.+ .+||..|++.++..++.
T Consensus 99 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 99 VVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFP 174 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHH
Confidence 35678888888888888899999999999999999999999999999999999988764 36999999888777666
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .+++||+++ +++ .++ + + ....++.++++... ...+..+
T Consensus 175 ~i~~~~~~~~~~~----~~~-~~~--------------~----~-----------~~~~~~~~~~~~~~----~~~~~~~ 216 (395)
T PRK10054 175 LVFIQIWVQRSEK----AIA-TET--------------G----S-----------VWSPSVLLQDKALL----WFTCSGF 216 (395)
T ss_pred HHHHHHHHhcccc----ccc-cch--------------h----h-----------hhhhhhhccCceeh----HHHHHHH
Confidence 544 444555431 000 000 0 0 00112233333222 2222222
Q ss_pred HHhhchhhhHhhHHHHH---HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHH
Q 017485 161 QQVTGINIIGLYAPVLL---RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIM 237 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 237 (371)
........+..+.+.+. ++.+.+....+ .......+......+..+++.||.++|+.+..+..+..++...+....
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 295 (395)
T PRK10054 217 LASFVSGAFASCISQYVMVVADSDFAEKVVA-VVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG 295 (395)
T ss_pred HHHHHHHHhhhhHHHHHHHhcccchHHHHHH-HHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc
Confidence 21112222333444444 23344444445 556666666666778889999999999998888766666655443320
Q ss_pred HhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 238 AAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
++.+...+...+++.+.. ...|....++.+..|++.|++..+..+ ..++|..++|.+.|.+.|+.+
T Consensus 296 ------------~~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g 361 (395)
T PRK10054 296 ------------NSLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP 361 (395)
T ss_pred ------------hHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 223333344444444433 223444566778889999999988654 677999999999999999998
Q ss_pred cchhhHHH
Q 017485 318 AGIFFFFG 325 (371)
Q Consensus 318 ~~~~~~~~ 325 (371)
....+...
T Consensus 362 ~~~~~~~~ 369 (395)
T PRK10054 362 PWSLFVIL 369 (395)
T ss_pred hhhHHHHH
Confidence 65444443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=150.96 Aligned_cols=260 Identities=14% Similarity=0.134 Sum_probs=166.1
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+....++.|.+++++|+++.++...+..+|..++|.+++.+.+. .|||+.|++.++..++.
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL---FGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHH
Confidence 568999999999988888889999999999999999999999999999999998887654 46999999988776655
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .+++||+++. +++ +++ .+..+++.++++..+... +..+
T Consensus 176 ~~~~~~~~~~~~~~---~~~-~~~------------------------------~~~~~~~~~~~~~~~~~~----~~~~ 217 (394)
T PRK11652 176 TFSMARWMPETRPA---DAR-RTR------------------------------VLASYRTLLSNRRFNCYL----LMLI 217 (394)
T ss_pred HHHHHHhCCccCcc---ccc-hhH------------------------------HHHHHHHHHcChHHHHHH----HHHH
Confidence 544 5567876531 000 000 011223333332222111 1122
Q ss_pred HHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
........+..+.+.++++ +|.+..+.+ +......++.+++..+.+++.||.+++.... .....+..+.+......
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 294 (394)
T PRK11652 218 GTLAGIAVFEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTLMWQS--VICCLLAGLLMWIPGWF 294 (394)
T ss_pred HHHHHHHHHHHhChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 2222333444555666655 888888877 7777778888889999999999988433322 22222221111111000
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
...+.+.......+.+.+.+... +....+..|.+| +.++++.++.+....+++.+++.+.+.+...
T Consensus 295 --------~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 295 --------GVMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 00123334444445555544333 444455567776 5789999999999999999999988876544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=137.67 Aligned_cols=269 Identities=17% Similarity=0.093 Sum_probs=194.1
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
|+.+-.+.|.|.+...+..++.+.+.+| |+-+..++++....++|..+++.++-.+.+.. .|||....+-+.++++.
T Consensus 102 L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allA 178 (395)
T COG2807 102 LFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLA 178 (395)
T ss_pred HHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999998 68899999999999999999998887777654 36999999999998888
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
++.++.-. .|.. . . ..+.+..+-.+++| ++.-|...+.+..
T Consensus 179 l~~WlPq~--~r~~----~-~----------------------------~~~~~~~~~~~vw~----~~~aW~vtLfmGl 219 (395)
T COG2807 179 LLIWLPQA--LREQ----A-A----------------------------SIATKLVSVRKVWR----SPLAWQVTLFMGL 219 (395)
T ss_pred HHHHhhhc--cccc----c-c----------------------------cccccccccccccc----CchhHHHHHHHHh
Confidence 77754321 1100 0 0 00011122233443 3446666777777
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL-GRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
+...+|....|+|.++.|.|+|..+++ ...+...+.+++.++....+.+|. ++|+..+....++.++.+.+.+.
T Consensus 220 qS~~~Y~~~~WLP~ili~~G~sa~~aG-~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~---- 294 (395)
T COG2807 220 QSLLYYIVIGWLPAILIDRGLSAAEAG-SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA---- 294 (395)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh----
Confidence 888899999999999999999999999 889999999999999999999965 56666666666677766666543
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeee-cccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVP-SEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK-A 318 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 318 (371)
+.+..+.. ..+.+.+.+..+. +....+ ...-.++..+.-.|+.+..+++...++|.++|.+.|..+ |
T Consensus 295 -------P~~~~~lw---~~llG~G~G~~F~-laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 295 -------PGQLPILW---ALLLGLGQGGAFP-LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred -------hhhHHHHH---HHHHhCccchHHH-HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 21222222 3444444443332 322332 333445677788899999999999999999999999988 4
Q ss_pred chhhHHHHHH
Q 017485 319 GIFFFFGGWV 328 (371)
Q Consensus 319 ~~~~~~~~~~ 328 (371)
...+...+.+
T Consensus 364 ~~~~~~l~~~ 373 (395)
T COG2807 364 SAPLVLLALA 373 (395)
T ss_pred HHHHHHHHHH
Confidence 4444443333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-20 Score=157.70 Aligned_cols=262 Identities=14% Similarity=0.095 Sum_probs=157.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-------CCcchHHHH-hh
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK-------GGWGWRISL-AM 73 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~Wr~~f-~~ 73 (371)
+++.|+++|++.+ ..+....++.|++|+++|++++++......+|..+++.++..+.... ...+||+.| ++
T Consensus 94 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~ 172 (366)
T TIGR00886 94 LLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIV 172 (366)
T ss_pred HHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Confidence 5679999999855 45678899999999999999999999777777777766665443311 124799999 44
Q ss_pred hHHHHHHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHH
Q 017485 74 AAAPASILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLV 152 (371)
Q Consensus 74 ~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (371)
.++...+..+. ..+.+|+|+. +++ +++.+. + +... ..+++......+.++++. +
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~--~---~~~~------------~~~~~~~~~~~~~~~~~~----~ 227 (366)
T TIGR00886 173 PAGILLLPALLIFFVGADTPPG---KPA-TGKLSF--K---GARW------------SVGTGALGDQLKVFRDRH----T 227 (366)
T ss_pred HHHHHHHHHHHHHHhcccCCcc---ccc-chhccc--c---cccc------------cccchhHHHHHHHHhccc----h
Confidence 45444443333 5556776631 101 000000 0 0000 000000012233333322 2
Q ss_pred HHHHHHHHHHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 153 MAILIPFFQQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
+...+..+......+.+..+.|.+++ .+|.+..+.+ .......+..+++.+++++++||+|||+.+..+......+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~ 306 (366)
T TIGR00886 228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAG-AYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAF 306 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHH
Confidence 33333344444455667778888885 5788888888 777888889999999999999999999887776655555444
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVF 301 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 301 (371)
.+.... .+..+.+.......+.....+.... ..+.+.+|..| +++++++|+.+..+++|
T Consensus 307 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 307 LVVLGL---------VSPLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHhcC---------CCcchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 443321 0000233333333334444444333 34566678876 68999999988887664
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=155.08 Aligned_cols=285 Identities=16% Similarity=0.141 Sum_probs=195.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.-++.|++.+...|.-.+++.|..|+++...++++.+...++..++||.+++.+.... |-.+.|.+.++.-++.
T Consensus 106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~---G~~~~f~inalsfl~~ 182 (524)
T PF05977_consen 106 LLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF---GAAAAFLINALSFLIS 182 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999887643 4677888877655444
Q ss_pred HHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHH
Q 017485 82 TVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQ 161 (371)
Q Consensus 82 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+.....+..++ +++.++| +.. +..+..++-..+++..+. ..+..+.
T Consensus 183 i~~l~~~~~~~~----~~~~~~e--~~~-----------------------~~l~~G~ryv~~~~~l~~----~l~~~~~ 229 (524)
T PF05977_consen 183 ILALLRWKPPPP----PSSLPRE--RFF-----------------------SALREGLRYVRSSPPLRS----VLLRSFL 229 (524)
T ss_pred HHHHHHcccccc----ccccchh--hhh-----------------------hhHHHHHHHHhcchHHHH----HHHHHHH
Confidence 443333332211 0000000 000 000112222222222111 1121222
Q ss_pred HhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 162 QVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
.+.....+...+|.+. +.+|.++...+ +.....+++.++|+++.+++.+|+++++.+..+.+..+++.+.+++.
T Consensus 230 ~~l~~~a~~aLlPl~a~~~l~~~a~~yG-ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~---- 304 (524)
T PF05977_consen 230 FNLFASAVWALLPLFARDVLGGGASGYG-LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS---- 304 (524)
T ss_pred HHHhhhHHHHhhhHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc----
Confidence 2222233445578887 56888888888 89999999999999999999999999998888887777776666554
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGI 320 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
.+.+...+..++.+.+........ .+...+..|++.||+++++.++....+..++..+.|.+.+..+...
T Consensus 305 ---------~~~~~~~~~l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~ 374 (524)
T PF05977_consen 305 ---------PSFWLALIALFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRT 374 (524)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 445555566666666655444333 3556788899999999999999999999999999999999988655
Q ss_pred hhHHHHHHHHHHHHHHH
Q 017485 321 FFFFGGWVIVMTTFMHL 337 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (371)
.+..+++..+++.+...
T Consensus 375 al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 375 ALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555544444444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-19 Score=151.64 Aligned_cols=290 Identities=11% Similarity=0.075 Sum_probs=170.7
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHH--------hhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhh
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLS--------EMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAM 73 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~--------e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~ 73 (371)
+++.|++.|++.+...+...+... |......|.+..| .+|.++++.+++.+... ..|+ +|++
T Consensus 95 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~---~~~~-~f~~ 164 (418)
T TIGR00889 95 MFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE---LSNI-QLYI 164 (418)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc---chhH-HHHH
Confidence 356888888887766666555432 2233334555555 35677777777665321 2355 4556
Q ss_pred hHHHHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHH
Q 017485 74 AAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVM 153 (371)
Q Consensus 74 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (371)
.++..++..+..+++||+|+. +++ +++ + .. +..+...++.+|++....
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~---~~~-~~~--------------~--~~---------~~~~~~~~~~~k~~~~~~--- 212 (418)
T TIGR00889 165 TAGSSALLGVFALTLPDIPVA---KST-AKM--------------S--IK---------VMLGLDAFILFKNKRMAI--- 212 (418)
T ss_pred HHHHHHHHHHHHhcCCCCCCC---ccc-ccc--------------C--HH---------HHhhhhHHHHhcCCCeee---
Confidence 666555555556678887631 111 000 0 00 000011223333332222
Q ss_pred HHHHHHHHHhhchhhhHhhHHHHHHHhCCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 017485 154 AILIPFFQQVTGINIIGLYAPVLLRTLKLSE--------SASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQ 225 (371)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 225 (371)
+.+..+...........+.|.+.++.|.++ ...+ .......+..+++.+..++++||+|||+.+..+.++
T Consensus 213 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g-~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~ 290 (418)
T TIGR00889 213 -FFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNAS-IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVA 290 (418)
T ss_pred -HHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 222222222222334456677777777554 3345 777788889999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHH-HHHHHHHHH
Q 017485 226 MFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITV-AVCLVFIFF 304 (371)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~ 304 (371)
..+....+.... ......+..++..++.+.+.+.. .+....++.|.+|++.|+++.|+.+ ....++..+
T Consensus 291 ~~v~~~l~~~~~---------~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 291 WALRFGFFAYGD---------PEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHHcC---------cchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 777655554420 00011223333444444444432 2344466789999999999999997 567899999
Q ss_pred HHHHHHHHHhhcc------cch-hhHHHHHHHHHHHHHHHhccCCCCC
Q 017485 305 TAQTFLAMLCHFK------AGI-FFFFGGWVIVMTTFMHLFLPETKNV 345 (371)
Q Consensus 305 ~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (371)
+|.+.|.+.+..+ |.. +...+++..+.+++.+++.+|++++
T Consensus 361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 9999999998753 443 3344445555666667777776544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-18 Score=146.69 Aligned_cols=276 Identities=9% Similarity=-0.110 Sum_probs=167.3
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHHhhhc
Q 017485 8 LLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTVGALF 87 (371)
Q Consensus 8 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~ 87 (371)
+.++..+...+..-++..|..++++++...+....+..+|.++++...+++.+. .|||..|++.+++.++..+..++
T Consensus 106 ~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 106 CASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---FGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556666778888888888888888888899999999887776654 45999999999887776666555
Q ss_pred CCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHhhchh
Q 017485 88 MPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGIN 167 (371)
Q Consensus 88 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (371)
++|+++ .+++ .++ +...++++.+|++..+..+. ..+.......
T Consensus 183 ~~~~~~---~~~~-~~~-----------------------------~~~~~~~~~l~~~~~~~~~~----~~~l~~~~~~ 225 (390)
T TIGR02718 183 LKDRAV---ASPE-APL-----------------------------ARRASLFRFFRRPLAWSLLA----LALLSAMTAV 225 (390)
T ss_pred cCCCCc---Cccc-cch-----------------------------hhHHHHHHHHcCcCHHHHHH----HHHHHHHHHH
Confidence 443321 0000 000 00112344554443222222 2222223334
Q ss_pred hhHhhHHHHHHHhCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 017485 168 IIGLYAPVLLRTLKLSESASLLLSAVVTG-GIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGG 246 (371)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (371)
....+.+.++++.|++.++.+ ....... ...+++.++.|++.||+|+|+.+..+..+..+.......... . .
T Consensus 226 ~~~~~~~~~l~~~G~s~~~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~-~-~---- 298 (390)
T TIGR02718 226 SGFGLSKLYLVDAGWPLEWIG-RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAA-F-W---- 298 (390)
T ss_pred HHHHHhhHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-c-c----
Confidence 444567777888999999988 5555554 566778899999999999999988776655333222211110 0 0
Q ss_pred CchhhHHHHHHHHHHHHhhhccccccceeeeecccCch-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 017485 247 FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL-EIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFG 325 (371)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (371)
.............+..++.+...... .....+..++ +.+++.+++.+....++..++|.+.|.+.+..++...+..+
T Consensus 299 -~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~ 376 (390)
T TIGR02718 299 -LAPGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSG 376 (390)
T ss_pred -cCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 00111122222222222233222222 2333344454 88999999999999999999999999999988876555555
Q ss_pred HHHHHHH
Q 017485 326 GWVIVMT 332 (371)
Q Consensus 326 ~~~~~~~ 332 (371)
..+.+.+
T Consensus 377 ~~~~l~a 383 (390)
T TIGR02718 377 TVLAVLA 383 (390)
T ss_pred HHHHHHH
Confidence 5444443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-20 Score=162.75 Aligned_cols=316 Identities=16% Similarity=0.194 Sum_probs=210.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTV 83 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 83 (371)
..=++.|+|.|..+..+..++..+|+ ++|+++.|+..++.++|..+-|.+...+.+. .|||+.+++.+.+.+-..+
T Consensus 140 t~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~---~G~r~~~l~~~~~~l~~~~ 215 (509)
T KOG2504|consen 140 TFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSK---YGWRGALLIFGGISLNVLV 215 (509)
T ss_pred HHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHH
Confidence 34578999999999999999998885 7999999999999999999999887776664 5699999999888766666
Q ss_pred h-hhcCCCChhhHHhhCCChHHHHHHHH--------HHhCccc-hH----HHHHHHHHHhcccccccchhhhhh----hc
Q 017485 84 G-ALFMPETPNSIIQRSNDPQKAKRMLQ--------RVRGTAD-VE----AELNDLIRASSISKTINHPFKKII----QR 145 (371)
Q Consensus 84 ~-~~~~~esp~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~ 145 (371)
. ...-|.+++....+.++.+......+ +....+. .. .+.+...+.+++.. ..+.+..+ .+
T Consensus 216 ~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~ 293 (509)
T KOG2504|consen 216 AGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWR--NSPLQAFLSMLDLS 293 (509)
T ss_pred HHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccc--ccchhhhhhhhhHH
Confidence 5 33444333210000000000000000 0000000 00 00000000011011 00111111 13
Q ss_pred cchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHH--HHHHH
Q 017485 146 KYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKIL--FLVGG 223 (371)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~--~~~~~ 223 (371)
..+.+.++.+.+.......+++....++|.+.++.|++..++. ...+..++..+++.++.|+++|+...++. ..++.
T Consensus 294 ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa-~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~l 372 (509)
T KOG2504|consen 294 LLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAA-FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTL 372 (509)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH-HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHH
Confidence 3444667778888888888899999999999999999999999 89999999999999999999999884443 33444
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHH
Q 017485 224 IQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIF 303 (371)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 303 (371)
+..+++...+... .+.+..+....+++.+.+. +..+....+.|+.+.++-..+.|+...++.++..
T Consensus 373 l~~gl~~~~~p~~-------------~~~~~l~~~~~~fG~~~g~-~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l 438 (509)
T KOG2504|consen 373 LIAGLARLFLPFA-------------TTYVGLIVFSILFGFCVGS-FSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL 438 (509)
T ss_pred HHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH
Confidence 4444443222222 3344555555555555543 3344445668999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHhcc
Q 017485 304 FTAQTFLAMLCHFK-AGIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 304 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
++|++.+.+.|..+ +...+.++.++.+.+...++..+
T Consensus 439 ~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 439 VGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999888 77777777777777776666666
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-19 Score=158.74 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=144.1
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCC-----------------
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGG----------------- 64 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------- 64 (371)
++++|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++++.+...+
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr 254 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR 254 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence 568999999999999999999999999999999999999999999999999999887654211
Q ss_pred c--chHHHHhhhHHHHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhh
Q 017485 65 W--GWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKI 142 (371)
Q Consensus 65 ~--~Wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (371)
| +||..|++.+++.++..+.++++|+..+....+.+ .++.++. ..+ ..+.+.. .........+.+.
T Consensus 255 WiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~-~~~~~~~--~~~-~~~~~~~--------~~~~~~~~~~~~~ 322 (633)
T TIGR00805 255 WIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN-VDVHETE--KLE-KSEDKSR--------KKNSDITKDFPKI 322 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc-hhhhhhh--ccc-ccccccc--------hhhhhhHHHHHHH
Confidence 1 38888999998888777666667654310000000 0000000 000 0000000 0000000111122
Q ss_pred hhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHhhhCc--hHH
Q 017485 143 IQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGG-IGTVLTIISMILVDKLGR--KIL 218 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~gr--r~~ 218 (371)
++...+++.++...+..+.....++.+..|+|.+++ .+|+++.+++ +......+ +.+++.+++|+++||+++ |+.
T Consensus 323 ~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag-~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~ 401 (633)
T TIGR00805 323 IKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEAN-FLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKA 401 (633)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHhhhhhhhHHHHHHhhhhheeeeecccHHHH
Confidence 223344455666767777777788889999999995 5899999888 55555554 678999999999999984 456
Q ss_pred HHHHHHHHHHHHHH
Q 017485 219 FLVGGIQMFVSQVI 232 (371)
Q Consensus 219 ~~~~~~~~~~~~~~ 232 (371)
+..+.++..++.+.
T Consensus 402 ~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 402 AYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555555433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=147.85 Aligned_cols=274 Identities=10% Similarity=0.084 Sum_probs=166.5
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTV 83 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 83 (371)
+.|++.|++.+...+....++.|.. +++++..+......++|.++++.+++.+.+ .+||.+|++.+++.++..+
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~ 177 (396)
T TIGR00882 104 VGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILML 177 (396)
T ss_pred HHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHH
Confidence 4567777777777777777776653 334566777778888999999999887754 4699999999888777665
Q ss_pred hhhc-CCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHH
Q 017485 84 GALF-MPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQ 162 (371)
Q Consensus 84 ~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (371)
..++ .||+|+. ++.++. . +.++++++..+.++.++++. ++...+..+..
T Consensus 178 ~~~~~~~~~~~~--------~~~~~~-----------------~-~~~~~~~~~~~~~~~l~~~~----~~~~~l~~~~~ 227 (396)
T TIGR00882 178 LLMFAKPKAPSS--------ATVANA-----------------L-GANASAFSLKLALELFRQRK----FWMFVLYVVGV 227 (396)
T ss_pred HHHHhCCCCchh--------hhhhcc-----------------c-ccccCCCCHHHHHHHHcCCc----HHHHHHHHHHH
Confidence 5444 4444321 000000 0 00001111123445554433 22222222222
Q ss_pred hhchhhhHhhHHHHHHHh----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 163 VTGINIIGLYAPVLLRTL----KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
...+.....+.|.++++. +.+....+ .......+...++.+..+++.||+|||+.+.++..+..+........
T Consensus 228 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g-~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-- 304 (396)
T TIGR00882 228 ACVYDVFDQQFANFFTSFFATPQQGTRVFG-YVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-- 304 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--
Confidence 233334444566666543 33444455 66777778888889999999999999999888877776655443332
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSI-TVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
.+.+.......+.+.+..... .....+..+..|++.++++.+. .+....+++.+++.+.|.+.+..|
T Consensus 305 -----------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G 372 (396)
T TIGR00882 305 -----------TTALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG 372 (396)
T ss_pred -----------CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 223333444444444332211 1223345666788888887776 567889999999999999999888
Q ss_pred cchhhHHHHHH
Q 017485 318 AGIFFFFGGWV 328 (371)
Q Consensus 318 ~~~~~~~~~~~ 328 (371)
+...+.+.+++
T Consensus 373 ~~~~f~~~~~~ 383 (396)
T TIGR00882 373 FQGAYLVLGCI 383 (396)
T ss_pred cHHHHHHHHHH
Confidence 65555444333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-16 Score=135.71 Aligned_cols=302 Identities=16% Similarity=0.145 Sum_probs=204.4
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCcc--------------------------cchhhHHHHHHHHHHHHHHHHhhhhccc
Q 017485 8 LLGIGIGFANQSVPLYLSEMAPPKHR--------------------------GAFNIGFQVCLAIGVLSANLLNYGTQKI 61 (371)
Q Consensus 8 l~G~~~~~~~~~~~~~i~e~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 61 (371)
+.-++.+...+.-.+++.|..+++++ ++..+.-.....+|.++.-.+...+...
T Consensus 135 ia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~ 214 (477)
T PF11700_consen 135 IANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVIS 214 (477)
T ss_pred HHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33456667778888999999999988 9999998888888888877765554322
Q ss_pred CC-----CcchHHHHhhhHHHHHHHHHh-hhcCCCChhhHHhhCCChHH--HHHHHHHHhCccchHHHHHHHHHHhcccc
Q 017485 62 KG-----GWGWRISLAMAAAPASILTVG-ALFMPETPNSIIQRSNDPQK--AKRMLQRVRGTADVEAELNDLIRASSISK 133 (371)
Q Consensus 62 ~~-----~~~Wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (371)
.+ ..+-|..+.+.++.-++..+. ++++||.|+. +..+..+ .+...
T Consensus 215 ~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~---~~~~~~~~~~~~g~------------------------ 267 (477)
T PF11700_consen 215 PGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGP---RPLPSGSSYLRFGF------------------------ 267 (477)
T ss_pred CCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCCcchhHHHHHH------------------------
Confidence 21 134688888888776555555 6678887642 1110000 00000
Q ss_pred cccchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 134 TINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK 212 (371)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 212 (371)
..+.+.+|+..+.+....+.+.++...-+...+......+. +++|++..+.. .......+..++|+++.+++.||
T Consensus 268 ---~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~-~~~l~~~i~a~~Ga~~~g~l~~r 343 (477)
T PF11700_consen 268 ---KRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI-VFGLVVQIVAIIGALLFGWLQDR 343 (477)
T ss_pred ---HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222233333344555667777777777888888888777 57999999988 88899999999999999999999
Q ss_pred hCch--HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhh
Q 017485 213 LGRK--ILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAG 290 (371)
Q Consensus 213 ~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 290 (371)
+|.| +.+.++.+...+..+.-.+-.... .....+.+...+...+.+.+.+. ..+..-++.+|+.|+++.+.-
T Consensus 344 ~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~-----~~g~~~~~~f~~~a~~~G~~~G~-~qs~sRs~~~~LiP~g~e~ef 417 (477)
T PF11700_consen 344 FGPKTKRTLLISLILWIIIPLYGLFGFWPS-----FFGLKSPWEFWVLAVLIGLFMGG-IQSASRSLFSRLIPPGREAEF 417 (477)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHhhhc-----ccCcccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCchhhHH
Confidence 9999 776666555533322221100000 00123455555666666666553 345666788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHhccCCCCCC
Q 017485 291 QSITVAVCLVFIFFTAQTFLAMLCHFK-AGIFFFFGGWVIVMTTFMHLFLPETKNVP 346 (371)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (371)
+|++...+...+.++|.+++.+.+..+ .+..+....+..++++++...++..|+++
T Consensus 418 Fgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 418 FGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 999999999999999999999999887 45555555566666666667777655543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=139.95 Aligned_cols=272 Identities=16% Similarity=0.095 Sum_probs=157.5
Q ss_pred hHHHHhhhhHHHHHHHHHHHHhhC-CCCcccchhhHHHHHHHHHHHHHHHHhhhh----cccCCCcchHHHHhhhHHHHH
Q 017485 5 GRVLLGIGIGFANQSVPLYLSEMA-PPKHRGAFNIGFQVCLAIGVLSANLLNYGT----QKIKGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 5 ~R~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~Wr~~f~~~~~~~~ 79 (371)
.-++.+++.....+.-.+++.|.. ++++|.+..++...+.++|..+.+.+...+ .......+|+....+.++..+
T Consensus 112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~ 191 (473)
T PRK10429 112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFI 191 (473)
T ss_pred HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 334455666666667778899998 588999999987777777655554443322 111112368888888777766
Q ss_pred HHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHH
Q 017485 80 ILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIP 158 (371)
Q Consensus 80 ~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (371)
+..+. ++..+|.+.. ++ ++ .+++++.++++.++...+++.+..+...
T Consensus 192 ~~~~~~~~~~~e~~~~----~~--~~--------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~ 239 (473)
T PRK10429 192 VSTIITLRNVHEVYSS----DN--QV--------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGM 239 (473)
T ss_pred HHHHHHHcCceecCCc----cc--cc--------------------------cccccCCCHHHHHHHHhcCHHHHHHHHH
Confidence 65555 4446664310 00 00 0001122344444322233334434444
Q ss_pred HHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
.+......+....+.+++.+....+....+ .......+..+++.++.++++||+|+|+.+..+..+..++.+.+.....
T Consensus 240 ~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
T PRK10429 240 ALAYNIASNIINGFAIYYFTYVIGDADLFP-YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL 318 (473)
T ss_pred HHHHHHHHHHHhhheeeEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443334444555555555544433444444 5556666888999999999999999999988777665555444332210
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCc-------hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
. ...+.+..++...+.+.+.+... +..+++.+|..+ .+..|...|.......++..+++.+.|.
T Consensus 319 ~--------~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 319 A--------APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred c--------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11223333344444444444333 344566678755 2334557788888899999999999999
Q ss_pred HHhhccc
Q 017485 312 MLCHFKA 318 (371)
Q Consensus 312 ~~~~~~~ 318 (371)
+.+..|+
T Consensus 390 ~l~~~Gy 396 (473)
T PRK10429 390 VLGLIGY 396 (473)
T ss_pred HHHHcCC
Confidence 8876553
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-16 Score=137.63 Aligned_cols=264 Identities=14% Similarity=0.082 Sum_probs=151.6
Q ss_pred hHHHHhhhhHHHHHHHHHHHHhhC-CCCcccchhhHHHHHHHHHHHHHHHHhhhhccc----CCCcchHHHHhhhHHHHH
Q 017485 5 GRVLLGIGIGFANQSVPLYLSEMA-PPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI----KGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 5 ~R~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~Wr~~f~~~~~~~~ 79 (371)
.-++.+.+.......-.++..|+. ++++|++..++...+..+|..+++.+...+... ....+|+..+.+.+++++
T Consensus 115 ~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~ 194 (444)
T PRK09669 115 TYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGV 194 (444)
T ss_pred HHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 344555555566666678889988 567899888888888888777776544332221 113579999988888777
Q ss_pred HHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHH
Q 017485 80 ILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIP 158 (371)
Q Consensus 80 ~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (371)
+..+. ++..+|.++ + ++ +++.+....+++.++++..+ .+.+.
T Consensus 195 v~~~~~~~~~~e~~~------~-~~--------------------------~~~~~~~~~~~~~~~n~~~~----~l~~~ 237 (444)
T PRK09669 195 VLFFCCFFMTKERYT------P-EV--------------------------DNSSSVWKDLKLLLGNSQWR----IMFIF 237 (444)
T ss_pred HHHHHHhCCeEEecC------C-CC--------------------------cCCCCHHHHHHHHhCCchHH----HHHHH
Confidence 66655 334444321 0 00 00001112334444433322 22222
Q ss_pred HHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
.+.............+++.+..-.+.+... .......+..+++.++.++++||+|+|+....+.+...+....+...
T Consensus 238 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-- 314 (444)
T PRK09669 238 NVVLLTAVVTRGGATLYYVNYVLLRPDLAT-LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-- 314 (444)
T ss_pred HHHHHHHHHHHhhhhheeeeeecCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--
Confidence 222222222222233333332222222233 45556667788899999999999999999887766554433322221
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCc-------hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
+.++.+...+...+.+.+.+. ..+..+++.+|..+ .+..|...|+.+....++..+++.+.+.
T Consensus 315 ---------~~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 315 ---------PPSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred ---------CcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333444444555555543 33566677788765 2234566788888899999999999999
Q ss_pred HHhhccc
Q 017485 312 MLCHFKA 318 (371)
Q Consensus 312 ~~~~~~~ 318 (371)
+.+..|+
T Consensus 385 ll~~~Gy 391 (444)
T PRK09669 385 ILAWVDY 391 (444)
T ss_pred HHHHcCC
Confidence 8886654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-18 Score=136.44 Aligned_cols=276 Identities=15% Similarity=0.043 Sum_probs=175.4
Q ss_pred CchhhHHHHhhhhHHHHHHHHHHHHhhCCCCc-ccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHH
Q 017485 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKH-RGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 1 ~l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 79 (371)
++++.|.+||+|.++..+...++++|.+|+++ |++++|+.-.+.++|.++||++|+.+.+..+ .+.+|++.+++.+
T Consensus 161 ~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G---k~aPFlVL~~v~L 237 (464)
T KOG3764|consen 161 MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG---KSAPFLVLAIVLL 237 (464)
T ss_pred HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC---CcCcHHHHHHHHH
Confidence 36789999999999999999999999999775 7999999999999999999999999988655 9999999999999
Q ss_pred HHHHhhhcC-CCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHH
Q 017485 80 ILTVGALFM-PETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIP 158 (371)
Q Consensus 80 ~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (371)
+-..+.+++ +.+.. + + ++..+..+++++++++. .+.....
T Consensus 238 ld~~L~l~vi~p~~~------~-~----------------------------~~~~~~~~~~~Ll~dP~----I~~~aga 278 (464)
T KOG3764|consen 238 LDGALQLLVIEPTEM------D-P----------------------------DSTEQGTPMWSLLMDPY----ILLIAGA 278 (464)
T ss_pred HHHHHHHheeCcccc------C-c----------------------------cccccCccHHHHHhCch----Hhhhhcc
Confidence 988885554 32211 0 0 01222445666665554 2222111
Q ss_pred HHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHH--HHHHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFL--VGGIQMFVSQVIIGS 235 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~--~~~~~~~~~~~~~~~ 235 (371)
......+...+-.-++.+. +++..+.-+.+ +......+...+++.+.|.++||++..+.+. .+.+...++...+.+
T Consensus 279 i~~~n~~lafLePtlslwm~e~m~~p~w~~G-~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~ 357 (464)
T KOG3764|consen 279 ITFSNSSLAFLEPTLSLWMLETMFTPGWEVG-LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPF 357 (464)
T ss_pred hhhccchHHHhCcccHHHHHHhccCCCccee-eeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHh
Confidence 1111122222222233433 55663333566 8888899999999999999999999544333 333333322222222
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh---hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE---IRSAGQSITVAVCLVFIFFTAQTFLAM 312 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (371)
.- .....+......++.+........|..... .|.-..+ ..|...++......++.+++|.+.|.+
T Consensus 358 ~~----------~~~~L~vp~~~l~~~i~~~dasl~P~l~~l-vd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~i 426 (464)
T KOG3764|consen 358 AT----------SIAQLWVPNFGLGFGIGLADASLIPTLGYL-VDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSL 426 (464)
T ss_pred hh----------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHh-cchhhccccceeeeHHHHHHHHHHHhhhccccccchh
Confidence 20 001122333333333333333333443222 3433333 567889999999999999999999999
Q ss_pred Hhhccc-chhhHHHHHHHH
Q 017485 313 LCHFKA-GIFFFFGGWVIV 330 (371)
Q Consensus 313 ~~~~~~-~~~~~~~~~~~~ 330 (371)
.+..|. +...+++....+
T Consensus 427 v~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 427 VEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred eeehhHHHHHHHHHHHHHH
Confidence 998884 333334433333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=133.95 Aligned_cols=262 Identities=12% Similarity=0.039 Sum_probs=143.6
Q ss_pred hHHHHhhhhHHHHHHHHHHHHhhCC-CCcccchhhHHHHHHHHHHHHHHHHhhhhcccCC----CcchHHHHhhhHHHHH
Q 017485 5 GRVLLGIGIGFANQSVPLYLSEMAP-PKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKG----GWGWRISLAMAAAPAS 79 (371)
Q Consensus 5 ~R~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~Wr~~f~~~~~~~~ 79 (371)
.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+....+ ..+|+....+.+++.+
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~ 194 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF 194 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 3344566666667777788899987 7899999999999999888777666443332221 2468888888777766
Q ss_pred HHHHhh-hcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHH
Q 017485 80 ILTVGA-LFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIP 158 (371)
Q Consensus 80 ~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (371)
+..... ...+|.++. ++ + +.+.+..++..++++. +..+...
T Consensus 195 i~~~i~~~~~kE~~~~----~~--~----------------------------~~~~~~~l~~~~~Nk~----~~~l~~~ 236 (460)
T PRK11462 195 MMLAFCFFTTKERVEA----PP--T----------------------------TTSMREDLRDIWQNDQ----WRIVGLL 236 (460)
T ss_pred HHHHHHHhcceeccCC----Cc--c----------------------------CCCHHHHHHHHhCChH----HHHHHHH
Confidence 665553 334443210 00 0 0000112233333222 2222222
Q ss_pred HHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
.+..............++.+....+....+ .......+..+++.+++++++||+++|+....+..+..+..+.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~-~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~-- 313 (460)
T PRK11462 237 TIFNILAVCVRGGAMMYYVTWILGTPEVFV-AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV-- 313 (460)
T ss_pred HHHHHHHHHHHHhHhhhhhhhhcCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--
Confidence 222222222222233333333222333333 45667778889999999999999999988765544433333222221
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCch-----hhh--hhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL-----EIR--SAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-----~~r--~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
+..+.....+..++.+.+.+ ...++.+.+.+|..+- ..| |...+.......++..+++.+.+.
T Consensus 314 ---------~~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 314 ---------PMQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred ---------chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11212222223333333332 2334445566666441 133 444566667888999999999888
Q ss_pred HHhhcc
Q 017485 312 MLCHFK 317 (371)
Q Consensus 312 ~~~~~~ 317 (371)
+.+..|
T Consensus 384 iL~~~G 389 (460)
T PRK11462 384 MLAYGG 389 (460)
T ss_pred HHHHcC
Confidence 876544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=133.41 Aligned_cols=266 Identities=15% Similarity=0.199 Sum_probs=184.4
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhCC-CCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCC----cchHHHHhhhHHH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMAP-PKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGG----WGWRISLAMAAAP 77 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~Wr~~f~~~~~~ 77 (371)
.+.-++..++.......-.++..|..+ +++|.+..+.-..+..+|.++...+...+.+..++ .+|++..++.+++
T Consensus 107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv 186 (428)
T PF13347_consen 107 FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIV 186 (428)
T ss_pred HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHH
Confidence 344555677777777788889999997 57899999999999999887666666555543331 2799999999988
Q ss_pred HHHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 78 ASILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 78 ~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
.++..+. .+.++|.++ + . ++++++.++++.++...+++.+..+.
T Consensus 187 ~~v~~~i~~~~~ke~~~------~-~----------------------------~~~~~~~~~~~~~~~~~~nr~~~~l~ 231 (428)
T PF13347_consen 187 GLVFFLITFFFVKERSV------E-V----------------------------TEQEKKISLRDSLRSLFRNRPFRILL 231 (428)
T ss_pred HHHHhhhhhheeeeccc------c-c----------------------------cccccccccccchhhhcccchHHHHH
Confidence 8877776 555666211 0 0 01111223333333333333344455
Q ss_pred HHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
+..+....+........+++.++ ++.+ ...+ .......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~-~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~ 309 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVLGNE-GLIS-IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF 309 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhH-HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence 55555555556666666777755 4444 4445 6677788899999999999999999999999999988888777666
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCch-------hhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL-------EIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
.. ..+.+..++...+.+.+.+... ...+++.+|+.+. +..|...|+.+....++..+++.+
T Consensus 310 ~~-----------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 310 LG-----------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred HH-----------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 51 1346666666777777766554 5667788898763 345788888888999999999999
Q ss_pred HHHHHhhcc
Q 017485 309 FLAMLCHFK 317 (371)
Q Consensus 309 ~~~~~~~~~ 317 (371)
.+.+.+..|
T Consensus 378 ~g~~l~~~G 386 (428)
T PF13347_consen 378 VGLLLALVG 386 (428)
T ss_pred HHHHHHHhC
Confidence 998877654
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=135.99 Aligned_cols=319 Identities=11% Similarity=0.047 Sum_probs=185.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHH-HHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLS-ANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+++.|+++|+|.+...+.+...+.+|+| ++||++.++...+.++|.++ +++...++. .+|+..|++.++++++
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~v 196 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALV 196 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHH
Confidence 5678999999999999999999999997 78999999999999999976 444444443 2488888888888777
Q ss_pred HHHh-hhcC--CCChhhHHhhCCChHHHHHHHHHHhCc--------------------------------------cch-
Q 017485 81 LTVG-ALFM--PETPNSIIQRSNDPQKAKRMLQRVRGT--------------------------------------ADV- 118 (371)
Q Consensus 81 ~~~~-~~~~--~esp~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~- 118 (371)
+.++ ..++ |++|++..++++ .++.++..++.++. +..
T Consensus 197 v~ll~~~~vr~p~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~ 275 (591)
T PTZ00207 197 VGILAIVFMRLPPFHLTGYQEKH-LDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNF 275 (591)
T ss_pred HHHHHHhheeCCcchhhcccccC-CCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 6655 3443 555555433322 12222211110000 000
Q ss_pred --------------------------------HHHHHHHH--H---H-hcccc-------c-ccchhhhhhhccchhHHH
Q 017485 119 --------------------------------EAELNDLI--R---A-SSISK-------T-INHPFKKIIQRKYRPQLV 152 (371)
Q Consensus 119 --------------------------------~~~~~~~~--~---~-~~~~~-------~-~~~~~~~~~~~~~~~~~~ 152 (371)
+++.++.+ + + .+.+. + ......+-+....++.-+
T Consensus 276 ~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~ 355 (591)
T PTZ00207 276 KVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARL 355 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhH
Confidence 00000000 0 0 00000 0 000111122233345567
Q ss_pred HHHHHHHHHHhhchhhhHhhHHHHHHHh-CCCchh--HHHHHHHHHHHHHHHHHHHHHHHHhhhCchH--------HHHH
Q 017485 153 MAILIPFFQQVTGINIIGLYAPVLLRTL-KLSESA--SLLLSAVVTGGIGTVLTIISMILVDKLGRKI--------LFLV 221 (371)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~--------~~~~ 221 (371)
|.++..+++...........+.++.+.+ |.+.+. .. ...+..++++.+|.+..|.+.....+|+ ..+.
T Consensus 356 Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~-~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~ 434 (591)
T PTZ00207 356 WCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNT-LLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF 434 (591)
T ss_pred HHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcccee-eehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence 7888888888777788888889999988 773433 23 3677888999999999998873332222 2222
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHH
Q 017485 222 GGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVF 301 (371)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 301 (371)
...++.++.+++.... + .....+..++.+++.+..+... ...++|+|. ++-|+-..+.....-+|
T Consensus 435 ~~~~~~~~~lll~~~~------------p-~~~L~~~~~lvg~~~G~~~~~~-~~i~selFg-k~~g~~yN~~~~a~pig 499 (591)
T PTZ00207 435 IPSVCIITMLTLFLTL------------P-KAALPLPYFIAAFANGFMAATI-ALVTRTIFA-KDPAKHYNFCFLGSVLS 499 (591)
T ss_pred HHHHHHHHHHHHHHHC------------C-ccHhHHHHHHHHHHhhHhHHHH-HHHHHHHhc-cchHHHhhHHhHHHHHH
Confidence 2222444444443331 1 1345566666666766665544 466799999 88787777777777777
Q ss_pred HHHH-HHHHHHHHhhcc-------------c-chhhHHHHHHHHHHHHHHHhccCCC
Q 017485 302 IFFT-AQTFLAMLCHFK-------------A-GIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 302 ~~~~-~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
+.+- ..+.|.++|.-. . ..+.+.++++.+..+......-+++
T Consensus 500 s~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 500 AIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 7665 456677765321 1 1444555555555544444444443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-17 Score=125.29 Aligned_cols=289 Identities=14% Similarity=0.089 Sum_probs=172.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCC----Ccch-----HHHH-
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKG----GWGW-----RISL- 71 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~W-----r~~f- 71 (371)
++++||+-|+|.-...+.-..|..-|+..|+.+.++|+.....-+|..+-..+..++.+..+ .-|- ...+
T Consensus 139 M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~ 218 (459)
T KOG4686|consen 139 MLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFE 218 (459)
T ss_pred HHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 57899999999888888889999999999999999999999988888776655554443221 0010 0000
Q ss_pred hhhHHHHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHH
Q 017485 72 AMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQL 151 (371)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (371)
......+++.+...-+. .++|++.+.+.++.. .+...+.+. +...++
T Consensus 219 ~~tc~~slical~lg~~-------------D~rAerilh~e~g~~-----------------Ge~pkLtdv--~~f~pp- 265 (459)
T KOG4686|consen 219 VKTCKQSLICALSLGLS-------------DDRAERILHLEEGFL-----------------GEEPKLTDV--NTFYPP- 265 (459)
T ss_pred HHHHHHHHHHHHHhhhh-------------hhHHHHHHhhhcCcc-----------------cCCcccccc--cccCcc-
Confidence 00011111111111111 122222211111100 000111111 112222
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
+|.+.+..++.....+.+....|.++ +.+|+++..++ .+.+.......+.+++.|.++||+|++...+.+..+..+..
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~-~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~ 344 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAG-NILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG 344 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhcc-chhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH
Confidence 44444444444555566667778777 56999999988 66666667788888999999999999988776655544433
Q ss_pred -HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 231 -VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
..+.+. .+.....+.+.+....... ...|..++.+.|.++-|++.|+++.+.++|-.+.|.+.
T Consensus 345 H~~l~Ft---------------~lsPy~~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iia 408 (459)
T KOG4686|consen 345 HSGLFFT---------------FLSPYTSMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIA 408 (459)
T ss_pred hhhHHhh---------------hccHHHHHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhh
Confidence 222222 1222333333333333221 12344557778999999999999999999999999999
Q ss_pred HHHHhhcc-c---chhhHHHHHHHHHHHHHHHhcc
Q 017485 310 LAMLCHFK-A---GIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 310 ~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
+.+.|+.+ + ..+++....+.+......+.+.
T Consensus 409 g~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N 443 (459)
T KOG4686|consen 409 GFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLN 443 (459)
T ss_pred heeecCCCchhhHHHHHHHHHHHHHHHHHHHhhee
Confidence 99998776 2 2445555555555444444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-14 Score=127.24 Aligned_cols=289 Identities=14% Similarity=0.101 Sum_probs=160.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
++++-.+.|+|.|.... ....++|..|.|.|+...++...........++.++..+... .+|||.|++..+...+.
T Consensus 134 ~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~---~~WRw~~~~~~i~~~i~ 209 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH---SGWRWIFYIFIIWSGIA 209 (599)
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC---CCcchHHHHHHHHHHHH
Confidence 56788899999777764 455689999999998877766655555555566666554432 46999999998876665
Q ss_pred HHh--hhcCCCChhhHHhhCCChHHHHHHHHHHhC--------------------cc-----chHHHHHHHHH-------
Q 017485 82 TVG--ALFMPETPNSIIQRSNDPQKAKRMLQRVRG--------------------TA-----DVEAELNDLIR------- 127 (371)
Q Consensus 82 ~~~--~~~~~esp~~~~~~~~~~~~~~~~~~~~~~--------------------~~-----~~~~~~~~~~~------- 127 (371)
.+. +++.|++.+ ..+++ ....++.+++++- .+ +.........-
T Consensus 210 ~vl~~~fY~PP~~~--~~~~~-~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~ 286 (599)
T PF06609_consen 210 LVLIFFFYFPPPRA--QLHGR-KLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVA 286 (599)
T ss_pred HHHHHHHhCCCchh--hhccc-cCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHH
Confidence 544 233443322 12222 1111222232210 00 00000000000
Q ss_pred ---Hhcccc-cccchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHH-HhCCCch---hHHHHHHHHHHHHH
Q 017485 128 ---ASSISK-TINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLR-TLKLSES---ASLLLSAVVTGGIG 199 (371)
Q Consensus 128 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~~~ 199 (371)
.+.... +.+.-..+++++. +.+....+..+.....++....+.|.... -++.+.. ..+ +...+...+.
T Consensus 287 F~~wE~~~~~~~Pl~P~~Lf~~~---r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~-~~s~~~~fg~ 362 (599)
T PF06609_consen 287 FVVWEWFGAPKDPLFPHRLFKDR---RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIG-WISSPVGFGS 362 (599)
T ss_pred HHHhhhhccCCCCcCCHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceee-hhhhhHHHHH
Confidence 000001 1111223344331 33444444444444455666666676654 3444442 345 6777888888
Q ss_pred HHHHHHHHHHHhhhCchHHH-HHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeee
Q 017485 200 TVLTIISMILVDKLGRKILF-LVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVP 278 (371)
Q Consensus 200 ~~~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (371)
.+|..+.+.+..+++|-|.. +++.+++.+++..++.. ..++....+...++.+++.+....+. ....
T Consensus 363 ~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~-----------~~~n~~~~i~~~~l~g~giG~~~~~~-~~~~ 430 (599)
T PF06609_consen 363 CAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV-----------RPDNKNAAIAFLVLAGFGIGGILVPA-IVIA 430 (599)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc-----------cCCCcchHHHHHHHHHHhHHHHHHHH-HHee
Confidence 99999999999998876655 45555554443333332 11112222333444444444333333 3444
Q ss_pred cccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017485 279 SEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAML 313 (371)
Q Consensus 279 ~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (371)
.-..|++.-+++.|+...+..+|+.++..++..+.
T Consensus 431 ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 431 QLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred EeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55678999999999999999999999887775443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=122.74 Aligned_cols=263 Identities=14% Similarity=0.110 Sum_probs=187.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-----C-----------Cc
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK-----G-----------GW 65 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~-----------~~ 65 (371)
++++-|+.|.|.+...+.+..++....|+++..+.+.+.+...++|.+++|+++..+.... + -.
T Consensus 107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~ 186 (422)
T COG0738 107 FLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADAS 186 (422)
T ss_pred HHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 5667799999999999999999999999999999999999999999999999987766510 0 11
Q ss_pred chHHHHhhhHHHHHHHHHhhhc--CCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhh
Q 017485 66 GWRISLAMAAAPASILTVGALF--MPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKII 143 (371)
Q Consensus 66 ~Wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (371)
.||++|...+...+++.+.... .||.+.- . ++ ..+..+....+.+
T Consensus 187 ~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-----~-~~---------------------------~~~~~~~~~~~l~ 233 (422)
T COG0738 187 SVQFPYLILAGLLVLLAVLILLSKLPDLQVA-----A-PS---------------------------LGASGSAGLSSLF 233 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----c-cc---------------------------ccccccchHHHHH
Confidence 4888998888776666665443 3433210 0 00 0001111334444
Q ss_pred hccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHH
Q 017485 144 QRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVG 222 (371)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 222 (371)
+++ .+....+..+++.........|++.++.+ .|.+..++. ...+....+.++|.+++.++..|+...|.+...
T Consensus 234 ~~~----~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa-~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~ 308 (422)
T COG0738 234 QNK----HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAA-YYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFY 308 (422)
T ss_pred hCh----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 433 35556666677777778889999999977 888888888 888999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHH
Q 017485 223 GIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFI 302 (371)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 302 (371)
.++..+.++...+. + ....+....+.+.+.+..+ |..+....+..| ++ ....|..-....+|+
T Consensus 309 a~~~ill~~~~~l~-------------~-g~v~~~~l~~ig~F~simf-PTIfslal~~l~-~~-ts~~s~~l~maivGG 371 (422)
T COG0738 309 ALIAILLLLAVALI-------------G-GVVALYALFLIGLFNSIMF-PTIFSLALKNLG-EH-TSVGSGLLVMAIVGG 371 (422)
T ss_pred HHHHHHHHHHHHHh-------------c-ChHHHHHHHHHHHHhHHHH-HHHHHHHHhccC-cc-ccccceeeeeheecc
Confidence 76666555555553 1 2334444445555555444 455566677777 33 333344456778899
Q ss_pred HHHHHHHHHHHhhcccc
Q 017485 303 FFTAQTFLAMLCHFKAG 319 (371)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (371)
++.|++.|++.|+.+..
T Consensus 372 AiiP~l~G~i~d~~g~~ 388 (422)
T COG0738 372 AIIPPLQGVIADMFGIQ 388 (422)
T ss_pred hHHHHHHHHHHHhhhhH
Confidence 99999999999998843
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=127.19 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=158.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcc---cCCCcchHHHHhhhHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK---IKGGWGWRISLAMAAAPA 78 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~Wr~~f~~~~~~~ 78 (371)
+.+.|++.|+..| ...+..++++|.+++|+|++.++.++.++++|.++||.+|+++.. ..+++-.-.+-++..++.
T Consensus 124 fv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a 202 (451)
T KOG2615|consen 124 FVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILA 202 (451)
T ss_pred HHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHH
Confidence 3456999999865 567889999999999999999999999999999999999999987 222222222233333333
Q ss_pred HH-HHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccc-hh--HHHHH
Q 017485 79 SI-LTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKY-RP--QLVMA 154 (371)
Q Consensus 79 ~~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~ 154 (371)
.. .....+++||+-+. |++ .+++.... +..++..+..+.+...+ ....+++. +. ...-.
T Consensus 203 ~~~v~~~~~~lpETL~~---rk~-~~~~~~~~----------~~~~~~~~~~~~~~~~~---v~~lrn~p~~~~i~~~~i 265 (451)
T KOG2615|consen 203 AGDVTFFPWFLPETLPL---RKR-NDEHSTLQ----------EAADDRLALLKFARIFK---VAALRNPPLLDFISVLRI 265 (451)
T ss_pred HHHHHHHHHhCCccccc---hhh-cccccchh----------hhhhhhhhhcchhhhhh---hhhhcCccccchHHHHHH
Confidence 33 44557789998431 222 11111000 00000000000000000 00111111 11 11222
Q ss_pred HHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC--chHHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLG--RKILFLVGGIQMFVSQV 231 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~ 231 (371)
+.+..+.+...+..+..+.+.+. +.+|+++.+.+ -+.+..++...+.........||.+ .+-.+..+..++.-..+
T Consensus 266 ~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G-~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~l 344 (451)
T KOG2615|consen 266 FGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG-KVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFL 344 (451)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe-eeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH
Confidence 23333333322233333333332 56899999988 6666666666665555555555554 33333333333222222
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
.+... ...........+..+..+.... ....+.....|++.||+.+|+....+.++-+++|.+.|.
T Consensus 345 lls~~-------------~~~~~l~~~s~l~sf~~A~~vt-~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~ 410 (451)
T KOG2615|consen 345 LLSLA-------------RTPVVLYLGSTLKSFSTASVVT-CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV 410 (451)
T ss_pred HHhcc-------------ccchhhhHHHHHHHHHHHHhhH-HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence 22221 2234444555555555554443 334666788899999999999999999999999999887
Q ss_pred HHhhc
Q 017485 312 MLCHF 316 (371)
Q Consensus 312 ~~~~~ 316 (371)
+..+.
T Consensus 411 i~~Ws 415 (451)
T KOG2615|consen 411 IFSWS 415 (451)
T ss_pred eEEEe
Confidence 76543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=134.61 Aligned_cols=292 Identities=12% Similarity=0.044 Sum_probs=161.3
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhCCCC--cccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMAPPK--HRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+++|+++|+|.|...|...+++.|.+|++ +|+++.+++..+.++|..+||.+++++.+.. |||+.|++.++..++
T Consensus 109 ~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~---gw~~~F~i~~i~~~~ 185 (489)
T PRK10207 109 FIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF---GYSVTYNLCGAGLII 185 (489)
T ss_pred HHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHH
Confidence 47899999999999999999999999877 4578999999999999999999999988754 599999997653333
Q ss_pred HHHhhhcCCCChhhHH--hhCCChHHHHHHH------------HHHhCccchHHHHHHHH----H---Hhcccccccchh
Q 017485 81 LTVGALFMPETPNSII--QRSNDPQKAKRML------------QRVRGTADVEAELNDLI----R---ASSISKTINHPF 139 (371)
Q Consensus 81 ~~~~~~~~~esp~~~~--~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~ 139 (371)
..+.+.+.++..+... .++++.|.....+ ........ ........ . -..++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~f~~~~~~~---- 260 (489)
T PRK10207 186 ALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVE-VANLVLIVLSIVVTIIFFREAFKL---- 260 (489)
T ss_pred HHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 3333333332211000 0000011101000 00000000 00000000 0 00000000
Q ss_pred hhhhhccchhHHHHHHH--HHHHHHhhchhhhHhhHHHHHHH-hCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 140 KKIIQRKYRPQLVMAIL--IPFFQQVTGINIIGLYAPVLLRT-LKL-----SESASLLLSAVVTGGIGTVLTIISMILVD 211 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~g~-----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 211 (371)
.+.+| ++.+..+. +.....+..+.......+.+.++ .+. .... . .......+..++.+++.+++.|
T Consensus 261 ~~~~r----~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~-~-~~~~~n~~~iii~~pl~~~l~~ 334 (489)
T PRK10207 261 DKTGR----NKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINP-V-SFQALNPFWVVVASPILAGIYT 334 (489)
T ss_pred CHHHH----HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECH-H-HHHhHhHHHHHHHHHHHHHHHH
Confidence 02222 22222222 11222333334444555555542 222 2121 2 2344455667678888899999
Q ss_pred hhCchHH-------HHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCch
Q 017485 212 KLGRKIL-------FLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL 284 (371)
Q Consensus 212 ~~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 284 (371)
|+++|+. +.++.++..++.+.+...... ....+ ...+.+..+....+.+.+.... .+....++.+..|+
T Consensus 335 rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~-~~~~~--~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~ 410 (489)
T PRK10207 335 HLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMW-FADAQ--GLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQ 410 (489)
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh-hcCCC--CccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChH
Confidence 9998863 666666666665443221110 11110 1123444455555555555543 34445666788899
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017485 285 EIRSAGQSITVAVCLVFIFFTAQTFLAM 312 (371)
Q Consensus 285 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (371)
+.++.++|+.+....+|+.++..+....
T Consensus 411 ~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 411 HLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988776544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=122.67 Aligned_cols=269 Identities=18% Similarity=0.183 Sum_probs=178.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCC-CCcccchhhHHHHHHHHHHHHHHHHhhhhcccCC----CcchHHHHhhhHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAP-PKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKG----GWGWRISLAMAAAPA 78 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~Wr~~f~~~~~~~ 78 (371)
+.-.+.+++......+-.++..|..+ ++||.+..+.-+.+..+|..+...+...+....+ ..||+..-.+.++++
T Consensus 117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~ 196 (467)
T COG2211 117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIG 196 (467)
T ss_pred HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 34456677777777777888888875 6899999999999999997766655544433322 358999998888888
Q ss_pred HHHHHhhhc-CCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHH
Q 017485 79 SILTVGALF-MPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILI 157 (371)
Q Consensus 79 ~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (371)
.+..+.+++ ++|.+. .+.+ .+...+.++++.+....+++.+....+
T Consensus 197 ~i~~l~~~~~v~ER~~---~~~~------------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~ 243 (467)
T COG2211 197 VILLLFCFFNVKERVV---ETQP------------------------------TKTGVKLKLKDSFLLIFKNRPLLLLLL 243 (467)
T ss_pred HHHHHHHHHHhhcccC---cccc------------------------------CcccccccHHHHHHHHHccchHHHHHH
Confidence 877777554 544432 0000 000112333322222222223333444
Q ss_pred HHHHHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 158 PFFQQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
..++.+.+.+.......+|.+ .+|.+..... ........+.+++.++..++.+|+|+|+++.++.++..++.+.+.+.
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~-~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAY-LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555666653 3566666666 66777777888889999999999999999999988888887777665
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCch-------hhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL-------EIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
+.++....++..++.+.+.+. ..++++++++|...- +.-|...|....+.-++.+++..+.
T Consensus 323 -----------~~~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 323 -----------PAGSVVLIVVALIIAGVGTGI-ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred -----------cCcchHHHHHHHHHHHHHhhc-cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 224455555555666666654 446788888887542 2346677777888889999999999
Q ss_pred HHHHhhccc
Q 017485 310 LAMLCHFKA 318 (371)
Q Consensus 310 ~~~~~~~~~ 318 (371)
++.++..|+
T Consensus 391 g~~L~~~Gy 399 (467)
T COG2211 391 GWILGAIGY 399 (467)
T ss_pred HHHHHHcCC
Confidence 998877653
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-14 Score=122.58 Aligned_cols=309 Identities=13% Similarity=0.060 Sum_probs=191.0
Q ss_pred hhHHHHHHHHHHHHhhCCCCcc--cchhhHHHHHHHHHHHHHHHHhhhhc--ccC--------C--CcchHHHHhhhHHH
Q 017485 12 GIGFANQSVPLYLSEMAPPKHR--GAFNIGFQVCLAIGVLSANLLNYGTQ--KIK--------G--GWGWRISLAMAAAP 77 (371)
Q Consensus 12 ~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~--------~--~~~Wr~~f~~~~~~ 77 (371)
+.....+...++++|.+|+++| +.+.++.+...++|.++|+.++++.. +.. + -.+-|+.|++.++.
T Consensus 127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~ 206 (477)
T TIGR01301 127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL 206 (477)
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence 7777888899999999998865 57999999999999999999987641 111 0 02578999998888
Q ss_pred HHHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhc-cchhHHHHHH
Q 017485 78 ASILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQR-KYRPQLVMAI 155 (371)
Q Consensus 78 ~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (371)
.++..+. .+.++|.|.. ..+ +..+ ++.++ .++.+.+..++++++. +..++.++.+
T Consensus 207 l~i~~l~t~~~v~E~~~~---~~~---~~~~--~~~~~---------------~~~~~~~~~~~~i~~~~~~mP~~m~~l 263 (477)
T TIGR01301 207 LAILTYIALSAVKENPLI---GSD---DFIN--SEAAP---------------PSKHGEEAFFGELFGAFKYLPRPVWIL 263 (477)
T ss_pred HHHHHHHHeeeeeccCCC---ccc---cchh--hhccc---------------ccccchhhhHHHHHHHHHHCCHHHHHH
Confidence 7777666 6678887631 000 0000 00000 0000111233444432 2234455566
Q ss_pred HHHHHHHhhchhhhHhhHHHHHH-H-hCCCch------hH---HHHHHHHHHHHHHHHHHHHHHHHhhhCc-hHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLLR-T-LKLSES------AS---LLLSAVVTGGIGTVLTIISMILVDKLGR-KILFLVGG 223 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~------~~---~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~ 223 (371)
.+..++.+.+.+.+..|...+.. + ++.++. +. +.+......+...+.+++..++.+|+|+ |+...++.
T Consensus 264 ~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~ 343 (477)
T TIGR01301 264 LLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVN 343 (477)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 66666777788888888877773 3 333221 11 3245556666666777888899999985 56667777
Q ss_pred HHHHHHHHHHHHHHHhhhCC-C-----CC--CchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh--hhhhhhHH
Q 017485 224 IQMFVSQVIIGSIMAAELGD-H-----GG--FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE--IRSAGQSI 293 (371)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~-~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~ 293 (371)
++.++++....+......+. . .. .+....+..++.....++..+... .++++++++..|++ ..|..+|+
T Consensus 344 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~-siPfal~s~~~~~~~~~~G~~mgi 422 (477)
T TIGR01301 344 IILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY-SIPFALASIRSSNLGAGQGLSMGV 422 (477)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH-HHhHHHHHHHccccCCCCcchhhH
Confidence 77777766655442110000 0 00 000113555666666666666443 57788889988854 45899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--cchhhHHHHH-HHHHHHHHHHhccCCCC
Q 017485 294 TVAVCLVFIFFTAQTFLAMLCHFK--AGIFFFFGGW-VIVMTTFMHLFLPETKN 344 (371)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 344 (371)
.|.+-.+...+.....|.+.+..+ ....+.++++ ..+.++...+.+|+++.
T Consensus 423 lN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 423 LNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999888887666555 2233334443 44455566677787654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=127.87 Aligned_cols=324 Identities=10% Similarity=0.034 Sum_probs=175.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCc---ccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKH---RGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPA 78 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 78 (371)
++++|++.|++.|...+...++++|++|+++ |+++.++++.+.++|.++|+.+++++.+. .|||+.|.+.++..
T Consensus 105 ~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~~~f~~~~~~~ 181 (475)
T TIGR00924 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYHVGFNLAAVGM 181 (475)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHH
Confidence 4578999999999999999999999998764 88899999999999999999999888764 46999999988655
Q ss_pred HHHHHhhhcCC----CChhhHHhhCCChHHHHHHHHHH--------------hCccchHHHHHH-------HHHHhcccc
Q 017485 79 SILTVGALFMP----ETPNSIIQRSNDPQKAKRMLQRV--------------RGTADVEAELND-------LIRASSISK 133 (371)
Q Consensus 79 ~~~~~~~~~~~----esp~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~~~~ 133 (371)
++..+.+.+.+ +.|+. .++.+.++........ ...+........ .........
T Consensus 182 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (475)
T TIGR00924 182 VIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAF 259 (475)
T ss_pred HHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433322 22210 0000011100000000 000000000000 000000000
Q ss_pred cccchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCch----hHHHHHHHHHHHHHHHHHHHHHH
Q 017485 134 TINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSES----ASLLLSAVVTGGIGTVLTIISMI 208 (371)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~~g~ 208 (371)
+....+. .+.+...++.+.+.....+..+......++.+.++ .+.+.. ..+ .......+..++..++..+
T Consensus 260 --~~~~~~~--~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~-~~~~~n~~~iil~~p~~~~ 334 (475)
T TIGR00924 260 --KPRLDAV--ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVI-WFQSLNPFWVVVGSPVLAM 334 (475)
T ss_pred --hccCCHH--HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHH-HHHhhhHHHHHHHHHHHHH
Confidence 0000001 11111223333443334444444445555555533 332211 133 4555666666666655444
Q ss_pred HHhhhCc-----hHHH--HHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeeccc
Q 017485 209 LVDKLGR-----KILF--LVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEI 281 (371)
Q Consensus 209 l~d~~gr-----r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 281 (371)
+-.|..| +... .++.++..++...++..... .++ ....+.+..+....+.+.+-. ...|....+..+.
T Consensus 335 ~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~--~~~--~~~~s~~~~i~~~~~~~~ge~-~~~p~~~~~~~~~ 409 (475)
T TIGR00924 335 IWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF--ADA--GGLTSPWFMVLIYLFQTLGEL-MISPLGLSWWTKI 409 (475)
T ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh--cCC--CCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHh
Confidence 3333333 3333 56666666666555543211 111 012345555555555555544 4456667788899
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHhcc
Q 017485 282 FPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAG-IFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 282 ~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 340 (371)
.|++.|++.+|+......+|..+++.+.....+..++. .+.....++.+.+++..+..|
T Consensus 410 aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 410 APQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887766655543 333444444444444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-15 Score=134.81 Aligned_cols=174 Identities=16% Similarity=0.133 Sum_probs=129.3
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
+.+..+........+...+|.+.++++.+..+.+ +..+...++.+++.+++|+++||+|||+.++++.++..++.++..
T Consensus 172 ~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g-~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~a 250 (742)
T TIGR01299 172 LGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKG-MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSS 250 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334566677888889999998888 888888999999999999999999999999998888777766665
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
+. .+.+..++..++.+++.+... +....++.|.+|++.|+...++.++...+|..+++.+...+..
T Consensus 251 fa-------------~s~~~llv~R~l~G~g~g~~~-p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~ 316 (742)
T TIGR01299 251 FV-------------QGYGFFLFCRLLSGFGIGGAI-PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP 316 (742)
T ss_pred HH-------------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 334555555666666655433 5667888999999999999999999999999998887666554
Q ss_pred hc-------------ccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 315 HF-------------KAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 315 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.. +|..++.+.++..+..++..+++||+.
T Consensus 317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33 245555566666666666777889873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=128.31 Aligned_cols=261 Identities=12% Similarity=0.059 Sum_probs=148.0
Q ss_pred hHHHHhhhhHHHHHHHHHHHHhhCC-CCcccchhhHHHHHHH-----HHHHHHHHHhhhhcccCCCcchHHHHhhhHHHH
Q 017485 5 GRVLLGIGIGFANQSVPLYLSEMAP-PKHRGAFNIGFQVCLA-----IGVLSANLLNYGTQKIKGGWGWRISLAMAAAPA 78 (371)
Q Consensus 5 ~R~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 78 (371)
.-++.+++.+...+...++..|..+ +++|.+..+.-..+.+ ++..++|.++........ .+|.....+.++++
T Consensus 115 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~-~~~~~~~~~~~v~~ 193 (448)
T PRK09848 115 TYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMV-SVYHFWTIVLAIAG 193 (448)
T ss_pred HHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hhHHHHHHHHHHHH
Confidence 3456677777777777777777765 4678887776654433 455556665543221100 12222222333333
Q ss_pred HHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHH
Q 017485 79 SILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILI 157 (371)
Q Consensus 79 ~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (371)
++..+. ....||+++ +++ ++...+..++++++++ .+....+
T Consensus 194 ~~~~~~~~~~~~e~~~----~~~------------------------------~~~~~~~~~~~l~~n~----~f~~~~~ 235 (448)
T PRK09848 194 MVLYFICFKSTRENVV----RIV------------------------------AQPSLKISLQTLKRNR----PLFMLCI 235 (448)
T ss_pred HHHHHHHHcCcEeccC----CCc------------------------------cCCCHHHHHHHHhCCc----hHHHHHH
Confidence 333333 334555432 000 0000112233444333 2343444
Q ss_pred HHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 158 PFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
..+.............|+++++ +|.+..... +......++.+++.++.+++.||+|+|+.+.++.++..++.+.+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 236 GALCVLISTFAVSASSLFYVRYVLNDTGLFTV-LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred HHHHHHHHHHHHhhhheeeEeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444445555566766644 565544444 44444466788899999999999999999999887777765554432
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh-------hhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE-------IRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
+..+.+.......+.+.+.+... +...++.+|..|.+ .+|...|+.+....++..+++.+.
T Consensus 315 -----------~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 315 -----------SVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333444444555544433 34456667776643 458889999999999999999999
Q ss_pred HHHHhhcc
Q 017485 310 LAMLCHFK 317 (371)
Q Consensus 310 ~~~~~~~~ 317 (371)
+.+.+..|
T Consensus 383 g~~l~~~G 390 (448)
T PRK09848 383 AFILGLSG 390 (448)
T ss_pred HHHHHHcC
Confidence 88876654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=125.16 Aligned_cols=181 Identities=17% Similarity=0.127 Sum_probs=151.6
Q ss_pred chhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH
Q 017485 147 YRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQM 226 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 226 (371)
.+.+.++..++.+......-..+..-.|.+.++.++|..+.+ .+.+...+..-++.++.|.++||.+.|..+..+++++
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG-~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLG-ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 445566677777777766777788889999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
++..+++++. ++.....++..+.+.+.+.++.|..- .+..-+|+++||+..++-|...++|+.+.|
T Consensus 105 ai~nil~Gfs-------------~s~~~~~~l~~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shNiGGal~~ 170 (448)
T COG2271 105 AIVNILFGFS-------------PSLFLFAVLWVLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHNIGGALAP 170 (448)
T ss_pred HHHHHHHhhh-------------hHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhhcccchHH
Confidence 9999999886 56777788888888999999887764 448999999999999999999999999999
Q ss_pred HHH--HHHHhhcccchhhH-HHHHHHHHHHHHHHhccCC
Q 017485 307 QTF--LAMLCHFKAGIFFF-FGGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 307 ~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 342 (371)
.+. +.+..+.+|...++ .+++..+.+++.++..+++
T Consensus 171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999 88888777655444 4555555666666666554
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=133.38 Aligned_cols=312 Identities=12% Similarity=-0.021 Sum_probs=183.3
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHH---HHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQ---VCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+.+++.+++.+..-+++-+++.|..+ +++....+... ....+|.++++.+++.+.+. .+||..|++.+.+.++
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll 200 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLL 200 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHH
Confidence 47889999999999999999999998 55555443433 33458999999998887764 3599999999888777
Q ss_pred HHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 81 LTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 81 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
..+...+++|++... +.+..++........ .....+. .++.....++.++++..++.+....+.+.
T Consensus 201 ~~~~~~~~~E~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~l~~~l~~~~i~~~l~fifl~~~ 266 (468)
T TIGR00788 201 QLFVSNLSKERRAFV--RPRIGTYLEMNMALL-----TLGVLAN-------VKVQILGLRGAIQLLEIAKPLIFIFLSYA 266 (468)
T ss_pred HHHHHHhcccccccc--cccccccchhhhhhh-----hhhHHHH-------HHHHHHHHHHHHhcHHHHHHHHHHHHHHh
Confidence 766677788864100 000000000000000 0000000 00001112222332222211111111011
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
. ..+ .....+. ...+.+|+++...+ ......+++.+++....+++.+|++.|+.+.++.++..++...........
T Consensus 267 ~-~~~-~~~~~f~-~~~~~lG~s~~~~G-~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~ 342 (468)
T TIGR00788 267 N-LPG-ASGSVFC-ATTQCLPGGPSFSG-MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRW 342 (468)
T ss_pred h-cCC-CCceeEE-EEcccCCCCcchhh-hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecc
Confidence 1 111 1111111 11146899999999 888888899999999999999999999999888877777654432211000
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK--- 317 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 317 (371)
.... .....+.......+...+.+....+. ..++.+..|++.+++..++.+.+.+++..+++.+.+.+.+..|
T Consensus 343 -~~~~--gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~ 418 (468)
T TIGR00788 343 -NLAF--GISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITC 418 (468)
T ss_pred -cccc--CCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 0000 00112233333444455555555555 4667899999999999999999999999999999998888776
Q ss_pred --cchhhHHHHHHH---HHHHHHHHhccC
Q 017485 318 --AGIFFFFGGWVI---VMTTFMHLFLPE 341 (371)
Q Consensus 318 --~~~~~~~~~~~~---~~~~~~~~~~~~ 341 (371)
+...+....++. +..+....++|+
T Consensus 419 ~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 419 DNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444444333333 333344446675
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=127.87 Aligned_cols=182 Identities=11% Similarity=0.102 Sum_probs=137.8
Q ss_pred chhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH
Q 017485 147 YRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQM 226 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 226 (371)
.+++.+....+.++......+......|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAA-SLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344555666677777777777788888988899999999998 8888999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
.++.+..... ++.+..++...+.+.+.+... +....++.|.+|+++|+.+.++.+....+|..+++
T Consensus 88 ~~~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 153 (405)
T TIGR00891 88 SAGTLACGFA-------------PGYITMFIARLVIGIGMGGEY-GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAA 153 (405)
T ss_pred HHHHHHHHHh-------------ccHHHHHHHHHHHHhhhhhhh-HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 7776666553 334445555555655555433 34456778999999999999999999999999999
Q ss_pred HHHHHHHhhcc--cchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 307 QTFLAMLCHFK--AGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 307 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.+.+.+.+..+ |...+...++..+..++.....||++
T Consensus 154 ~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 154 QVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 99888887665 65555555544444555555567654
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-15 Score=128.92 Aligned_cols=178 Identities=15% Similarity=0.094 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
.+....+..+...........+.|.+.+++|.+..+.+ +......++.+++.++.|+++||+|||+.+..+.++..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 96 (398)
T TIGR00895 18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT 96 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHH-HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444444454444556677788888899999998888 88888889999999999999999999999998887777766
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
+..... .+.+..++...+.+.+.+.. .+....+..|.+|++.|+++.++.+....++..+++.+.+
T Consensus 97 ~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 97 LLCALA-------------TNVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHc-------------cchHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 655443 23444455555555555543 3455677899999999999999999999999999999999
Q ss_pred HHHhhcccchhhHHH-HHHHHHHHHHHHhccCCC
Q 017485 311 AMLCHFKAGIFFFFG-GWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 343 (371)
.+.+..++...+.+. .+..+...+...+.||+.
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 998888866555444 344455555556677653
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=125.96 Aligned_cols=182 Identities=13% Similarity=0.039 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHH
Q 017485 148 RPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMF 227 (371)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 227 (371)
+++.+....+.++.+......+....|.+.+++|.+..+.+ +..+...++..++.+..|++.||+|||+.+..+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFG-LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 34455666666666666677778888888899999999999 88899999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHH
Q 017485 228 VSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
++....... ++.+..++...+.+.+.+.. .+....++.|.+|+++|++++++.+....+|..+++.
T Consensus 85 ~~~~~~~~~-------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 150 (412)
T TIGR02332 85 IASTATMFA-------------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI 150 (412)
T ss_pred HHHHHHHHh-------------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776654 33445555555666665543 3454567799999999999999999999999999999
Q ss_pred HHHHHHh------hcccchhhHHH-HHHHHHHHHHHHhccCCCC
Q 017485 308 TFLAMLC------HFKAGIFFFFG-GWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 308 ~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 344 (371)
+.+.+.+ ..+|...+... +...+...+.++++||+++
T Consensus 151 ~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 151 LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 9888764 24665555544 3334444556667787654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=125.20 Aligned_cols=176 Identities=13% Similarity=0.146 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
++.+.+..++...+.+....++|.++ +++|.+..+.+ +..+...+..+++.++.|+++||+|||+.+..+.....++.
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIG-YAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 44455555555667777777787777 56899999999 88888888999999999999999999999988887777766
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
+.+.+. ++.+..++...+.+.+.+ ...+....+..|..|+++|+++.|+.+...+++..++|.+.+
T Consensus 88 ~~~~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 88 IAIPLV-------------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHHH-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655543 223333333333333333 233445567789999999999999999999999999999999
Q ss_pred HHHhhcccchhhHHHHHHHHHH-HHHHHhccCCC
Q 017485 311 AMLCHFKAGIFFFFGGWVIVMT-TFMHLFLPETK 343 (371)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 343 (371)
.+.+ .++...+...+++.+.. +...++.||.+
T Consensus 154 ~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 154 LLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8775 45554444444443333 33444455543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-13 Score=117.52 Aligned_cols=264 Identities=17% Similarity=0.080 Sum_probs=164.0
Q ss_pred hHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHH-hhhhcccCCCcchHHHHhhhHHHHHHHHH
Q 017485 5 GRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLL-NYGTQKIKGGWGWRISLAMAAAPASILTV 83 (371)
Q Consensus 5 ~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 83 (371)
.-++..+......|..-++..+... +++.-.|-.-...++|.+++... +..+....+..+..+.+++.+..+++...
T Consensus 97 ~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~ 174 (400)
T PF03825_consen 97 IMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAG 174 (400)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH
Confidence 3444555566667777777777765 34444555555666666666433 12222222212234456666666655555
Q ss_pred hhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHh
Q 017485 84 GALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQV 163 (371)
Q Consensus 84 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (371)
..+.+|+.|+. ++. +++ .++....+..+++|++. +..+.+..+...
T Consensus 175 ~~l~lp~~~~~---~~~-~~~--------------------------~~~~~~~~~~~llk~~~----~~~Fll~~~l~~ 220 (400)
T PF03825_consen 175 FALFLPKTPPK---RSA-KES--------------------------VKKLLGLDALKLLKNPR----FLVFLLAAFLIG 220 (400)
T ss_pred HHHhCCCCccc---ccc-CCC--------------------------cccccchHHHHHhcCcc----HHHHHHHHHHHH
Confidence 56677887621 111 000 00000112234444433 333333334444
Q ss_pred hchhhhHhhHHHHHHHhC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 017485 164 TGINIIGLYAPVLLRTLK-LSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELG 242 (371)
Q Consensus 164 ~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (371)
........+.+.++++.| .+....+ .......+..++.-...+++..|+|.|+++.++.+..++=..+++...
T Consensus 221 ~~~~~~~~f~~~yl~~~gg~~~~~~g-~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~----- 294 (400)
T PF03825_consen 221 ISHAAYYTFFSIYLQELGGYSGSTIG-ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS----- 294 (400)
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 455566777888899988 6666666 666788889999999999999999999999999988888877776641
Q ss_pred CCCCCchhhHHHHHHH----HHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 017485 243 DHGGFSEGYAYLILVL----VCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV-CLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 317 (371)
++.+..... ..+.+..++..+. ....++.+..|++.|+++.++.+.. ..+|..++..+.|++.|+.+
T Consensus 295 -------~~~~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 295 -------DPWPFIVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred -------CCcHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 112222221 2335555554443 3347778999999999999998876 56999999999999999876
Q ss_pred c
Q 017485 318 A 318 (371)
Q Consensus 318 ~ 318 (371)
.
T Consensus 367 ~ 367 (400)
T PF03825_consen 367 A 367 (400)
T ss_pred c
Confidence 3
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-15 Score=129.46 Aligned_cols=213 Identities=16% Similarity=0.194 Sum_probs=150.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCC--------------c--
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGG--------------W-- 65 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------------~-- 65 (371)
++++.++.|+|....++...+|+-|...+++-+.++|+......+|+++|.++++++.+...+ |
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence 578999999999999999999999999999999999999999999999999999887653211 1
Q ss_pred chHHHHhhhHHHHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccc---hhhhh
Q 017485 66 GWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINH---PFKKI 142 (371)
Q Consensus 66 ~Wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 142 (371)
.|..-|++.+.+.++..+.++++|...+- .++ +.++ ++.+...+.+. ..+....... .+.+.
T Consensus 320 AWWlGFLi~g~~~~~~a~p~f~fPk~lp~---~~~-~~~~----~~~~~~k~~~~-------~~~~~~~~~~~ikdfp~s 384 (735)
T KOG3626|consen 320 AWWLGFLICGALLLFSAVPLFFFPKELPK---SQK-RKRA----RDLHVLKTESG-------GAKSDKTFGKKIKDFPKS 384 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCcc---ccc-cchh----hhhcccccccc-------cccCCcchhhhHHHHHHH
Confidence 58889999999999998888888876431 111 0000 00000000000 0001111111 23333
Q ss_pred hhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCc--hHHH
Q 017485 143 IQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGR--KILF 219 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~~~ 219 (371)
+++...++++....+...+....+.++..|+|.|+ +++|.+...+..+...+..-+..+|.+++|++..|+.- |...
T Consensus 385 ~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a 464 (735)
T KOG3626|consen 385 IKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAA 464 (735)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHH
Confidence 44566777888888999999999999999999999 56999999998555566666778889999999998753 4444
Q ss_pred HHHHHHHHHH
Q 017485 220 LVGGIQMFVS 229 (371)
Q Consensus 220 ~~~~~~~~~~ 229 (371)
....+...+.
T Consensus 465 ~~~~~~~~l~ 474 (735)
T KOG3626|consen 465 KFVIVCSVLS 474 (735)
T ss_pred HHHHHHHHHH
Confidence 4433333333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-14 Score=114.75 Aligned_cols=296 Identities=15% Similarity=0.097 Sum_probs=192.5
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhh--hhcc-------------cCCCcchH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNY--GTQK-------------IKGGWGWR 68 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~~~~-------------~~~~~~Wr 68 (371)
+.-.+..++.....+.-.+++.+..++++-++..+.-.....+|..+.-++.. .+.. ..+...=|
T Consensus 120 ~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~r 199 (438)
T COG2270 120 LFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVR 199 (438)
T ss_pred HHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccch
Confidence 34456667777777888899999999988888777655555555544433321 1110 01123567
Q ss_pred HHHhhhHHHHHHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccc
Q 017485 69 ISLAMAAAPASILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKY 147 (371)
Q Consensus 69 ~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (371)
..+.+.++--++..+- ++.+++.++ .+.+.....+... ++.+.++++..++
T Consensus 200 i~~~l~A~W~li~~iPm~~~v~~~~~---~~~~~~~~l~~g~-----------------------k~L~~t~k~i~~~-- 251 (438)
T COG2270 200 ITGLLAALWWLLFALPMILNVHDAEK---ISSPPPTALRNGF-----------------------KELKSTFKEIRGR-- 251 (438)
T ss_pred hHHHHHHHHHHHHHhHHHhccccccc---ccccchHHHHHHH-----------------------HHHHHHHHHHhcc--
Confidence 8888887766665554 555655543 0001000000000 1112334444332
Q ss_pred hhHHHHHHHHHHHHHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH
Q 017485 148 RPQLVMAILIPFFQQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQM 226 (371)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 226 (371)
+.+..+.+..+...-+.+........+-. ++|.+..+.. +......+..++|+++.|++.||+|.|+++..+.++.
T Consensus 252 --~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~ll-l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~ 328 (438)
T COG2270 252 --KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELL-LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVIL 328 (438)
T ss_pred --cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHH
Confidence 23445556666666677777777777774 8999999999 8889999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
.+.++..... ......++...+.+...+ .....+-+|..+++|+++.++.+|+++..+...++.+|
T Consensus 329 ~~~~~~~~~~-------------~~~~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp 394 (438)
T COG2270 329 SIAALYLIFL-------------EGELDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGP 394 (438)
T ss_pred HHHHHHHHHc-------------cccHHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHH
Confidence 6665544443 112223333344444444 33345567889999999999999999999999999999
Q ss_pred HHHHHHHhhccc-chhhHHHHHHHHHHHHHHHhccCCCC
Q 017485 307 QTFLAMLCHFKA-GIFFFFGGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 307 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
...+.+.+.++. ..-....++....+++.....|+.++
T Consensus 395 ~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~ 433 (438)
T COG2270 395 FLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGR 433 (438)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCCCC
Confidence 999999888773 44444444455556666666665533
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=126.24 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 150 QLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
..+....+.++........+..+.|.+.+++|.+..+.+ +......++..++.++.|++.||+|||+.+.++.++..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH
Confidence 344445555555555555677889999999999999988 8888999999999999999999999999999988888887
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
.+..... ++.+...+...+.+.+.+... +....++.|.+|+++|++++++.+....++..+++.+.
T Consensus 102 ~~~~~~~-------------~~~~~l~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 167 (434)
T PRK11663 102 NILFGFS-------------SSLWAFALLWVLNAFFQGWGW-PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVV 167 (434)
T ss_pred HHHHHHH-------------hHHHHHHHHHHHHHHHHHccc-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666553 334444444444454444443 34456778999999999999999999999999999999
Q ss_pred HHHHhhcccchhhHHHHH-HHHHHHHHHHhccCC
Q 017485 310 LAMLCHFKAGIFFFFGGW-VIVMTTFMHLFLPET 342 (371)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 342 (371)
+.+.+..+|...+...++ ..+..+...++++|+
T Consensus 168 ~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 168 GAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999888887655554443 333334444555654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-14 Score=116.72 Aligned_cols=177 Identities=13% Similarity=0.050 Sum_probs=149.8
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 228 (371)
+..++.+.+..|......+.....+|.+.++++.+...++ ...+.+..+..++.++...+.||+.||++++....++.+
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG-~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAG-QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 3345667777777778888899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 229 SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
+.++..+. ++.+..++...+.+...+..+ ++...+..++.|+++|+++.++.+....+...++.++
T Consensus 91 ~n~l~alA-------------p~f~~Ll~aR~~~g~a~G~f~-~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPL 156 (394)
T COG2814 91 SNLLSALA-------------PSFAVLLLARALAGLAHGVFW-SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156 (394)
T ss_pred HHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccH
Confidence 99988886 556677777777777776554 4666888999999999999999999999999999999
Q ss_pred HHHHHhhcccchh-hHHHHHHHHHHHHHHHhcc
Q 017485 309 FLAMLCHFKAGIF-FFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 340 (371)
..++-+..||+.. +.++.+..+..+..+..+|
T Consensus 157 Gt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 157 GTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999998654 4555555555666677788
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=117.63 Aligned_cols=298 Identities=11% Similarity=0.035 Sum_probs=181.6
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC---CCcchHH--HHhhhHHH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK---GGWGWRI--SLAMAAAP 77 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~Wr~--~f~~~~~~ 77 (371)
+.+..+.+.+.-........+..-|+|+++|..+..+-..+..+|.+++.++...+.... ++..|-. .|+....+
T Consensus 144 ~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l 223 (480)
T KOG2563|consen 144 HTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECL 223 (480)
T ss_pred HHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHH
Confidence 356677777766666666677888999999999999999999999999999988776654 2346765 35544444
Q ss_pred HHHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 78 ASILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 78 ~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
+.+.+.. .+..+|.|+.. ++.+... .. +.++.+-.++-.+++.+....
T Consensus 224 ~~l~l~l~~~~~~~~P~tP------ps~s~~~---------------------~~----~~~f~~si~~~~~n~~F~il~ 272 (480)
T KOG2563|consen 224 AALLLALVLFVFTKKPPTP------PSASQAA---------------------LQ----DASFPKSIKSCFKNRQFIILA 272 (480)
T ss_pred HHHHHHHHHHhcCCCCCCC------CchhHhh---------------------hh----cCcHHHHHHHHHcCccHHHHH
Confidence 4333333 33333333210 1111000 00 112333233333344466666
Q ss_pred HHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHH-HHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLV-GGIQMFVSQVIIGS 235 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~ 235 (371)
+.+......++.....+...+...|++...++ .......+++++++.++|.+.||.+.-+.... ......++. ++..
T Consensus 273 ~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG-~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~-~~l~ 350 (480)
T KOG2563|consen 273 ICYGIGLGLFNSLSTLLNLALCPSGYEGVFAG-YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT-LMLL 350 (480)
T ss_pred HHHhhhHHHHHHHHHHhhhccccccCCccccc-hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHH
Confidence 66666666666666666655556677777777 88888899999999999999999876554333 333322221 1111
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
.... .....+.......+++++ ..+..|+-.-+..|..-|..-++..|+.+..+.+.+.+-..+.+...+.
T Consensus 351 ~~t~--------~~~~~viv~~t~~~~g~~-~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~ 421 (480)
T KOG2563|consen 351 TCTL--------FLGDSVIVFTTCGLLGFF-GTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED 421 (480)
T ss_pred Hhhc--------cCCceEehhhhHHHHHHh-hcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence 1110 112233333333344433 3355677777777765566778889999999999999999998888877
Q ss_pred cc----cchhhHHHHHHHHHHHHHHHhccCC
Q 017485 316 FK----AGIFFFFGGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 316 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (371)
.+ +....+......+.......+.++.
T Consensus 422 ~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 422 LGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred cCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 66 4444444445555555555555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-14 Score=121.73 Aligned_cols=175 Identities=19% Similarity=0.096 Sum_probs=128.6
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
..+..+....+........|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 10 LGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQ-MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 3333344444555666677888899999999988 888999999999999999999999999999998888877776665
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
.. ++.+...+...+.+.+.+... +....++.|.+|+++|+++.++.+....++..+++.+.+.+.+
T Consensus 89 ~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 154 (385)
T TIGR00710 89 LS-------------NNIETLLVLRFVQAFGASAGS-VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV 154 (385)
T ss_pred HH-------------ccHHHHHHHHHHHHcchhHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 334444555555555544333 3445677899999999999999999999999999999999888
Q ss_pred hcccchhhHH-HHHHHHHHHHHHHhccCCCC
Q 017485 315 HFKAGIFFFF-GGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 315 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 344 (371)
..+|...+.. ..+..+..+...+..||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 155 WLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8777654444 33334444444555666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-14 Score=122.73 Aligned_cols=163 Identities=14% Similarity=0.092 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
.+....+.++.............|.+.+++|.++.+.+ +......++..++.++.|+++||+|||+.+..+.+...++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 97 (426)
T PRK12307 19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGA-FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGT 97 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 34445555555555666667777888899999999888 88888999999999999999999999999999998888887
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
...... ++.+...+...+.+.+.+... +....++.|.+|+++|+++.++......+|..+++.+.+
T Consensus 98 ~~~~~~-------------~~~~~l~~~r~l~G~g~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~ 163 (426)
T PRK12307 98 GLSGLA-------------SGVIMLTLSRFIVGMGMAGEY-ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163 (426)
T ss_pred HHHHHH-------------hHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHH
Confidence 766654 334555555556655554333 344566789999999999999999999999999998888
Q ss_pred HHHhhcccchhhHHHHHH
Q 017485 311 AMLCHFKAGIFFFFGGWV 328 (371)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~ 328 (371)
.+.+..+|...+.+..+.
T Consensus 164 ~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 164 SFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHcccCCHHHHHHHHHHH
Confidence 888777776555554433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=122.59 Aligned_cols=284 Identities=11% Similarity=0.112 Sum_probs=159.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhh---HHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMA---AAPA 78 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~---~~~~ 78 (371)
|.+.|++.|+++|+.+ +...++..|+|+++|+++.++..++..+|.+++++++..+.. +|||+.+.+. ....
T Consensus 118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s----~gWr~y~~Ln~Isl~s~ 192 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT----LGWISYSTLNIISLVFM 192 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHH
Confidence 5789999999999999 999999999999999999999999999999999999988442 5698765443 3333
Q ss_pred HHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhh---hhccchhHHHHHH
Q 017485 79 SILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKI---IQRKYRPQLVMAI 155 (371)
Q Consensus 79 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 155 (371)
.+.+++.+++|..++-+.-++++..+ .....+.....+.+. .+ .....+......++.+ ++...+++.++.-
T Consensus 193 ~~a~~~a~~LP~~~~sl~f~~~~~~~-~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~W 267 (511)
T TIGR00806 193 TFSVFLALFLKRPKRSLFFNRLEDVR-GALPCELDQMVPGPG--GK--LEDYLGTCRDSFLVRMLSELVTIYRNPQLLLW 267 (511)
T ss_pred HHHHHHHHhCCCCchhhhhccccccc-cccccccccCCCCCc--cc--cchhhhhhhhHHHHHHHHHHHHHhcCcchhhh
Confidence 44444567788555432222211000 000000000000000 00 0000000000111111 1122223333333
Q ss_pred HHHHHHHhhchhhhHhhHHHHHHHhCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLLRTLKLSES-ASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
.+.+....++++-+..|.-.+.++..-+.. -.+ ..-++..+.+.+.++..|++-.++.+--.+.++.....-+.+++.
T Consensus 268 SlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG-~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~ 346 (511)
T TIGR00806 268 SLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNG-AVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFW 346 (511)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCC-HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhh
Confidence 344444555666677777666666544322 334 566677777888888899886655332233333222222222221
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
.. ..++.|...+..+++...+.+..... ..-++.....+.-|...|+.++..-+...+...+
T Consensus 347 m~-----------~t~~Iw~~Y~~yvlf~~~y~flitia-~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 347 MS-----------QSHDIWVLYVTYVLFRGIYQFLVPIA-TFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred hh-----------cccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 11 12567888888888887776554433 3333455566666888888877776666555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.3e-14 Score=120.06 Aligned_cols=161 Identities=9% Similarity=0.032 Sum_probs=120.1
Q ss_pred hhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 017485 167 NIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGG 246 (371)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (371)
+......|.+.+++|.+..+.+ +......++..++.+..|.+.||+|||+.+..+..+..++.+.....
T Consensus 26 ~~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 94 (390)
T PRK03545 26 FVPVGLLSDIAQSFHMQTAQVG-LMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA---------- 94 (390)
T ss_pred HHHHcchHHHHhHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh----------
Confidence 3444557888899999999999 88888888999999999999999999999999988888887766654
Q ss_pred CchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHH
Q 017485 247 FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGG 326 (371)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (371)
++.+..++...+.+.+.+. ..+....+..|.+|+++|+.++|+......++..++|.+.+.+.+..+|...+...+
T Consensus 95 ---~~~~~l~~~r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 170 (390)
T PRK03545 95 ---WNFTVLLISRIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIG 170 (390)
T ss_pred ---ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHH
Confidence 3344444444444444432 234445667899999999999999999999999999999999888888765544443
Q ss_pred H-HHHHHHHHHHhccCC
Q 017485 327 W-VIVMTTFMHLFLPET 342 (371)
Q Consensus 327 ~-~~~~~~~~~~~~~~~ 342 (371)
+ ..+.........||.
T Consensus 171 ~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 171 GGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 3 333333444445654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=123.88 Aligned_cols=164 Identities=18% Similarity=0.067 Sum_probs=126.0
Q ss_pred chhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 017485 165 GINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDH 244 (371)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (371)
....+....|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++...+...
T Consensus 9 ~~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------- 79 (399)
T TIGR00893 9 DRANLSFAAPMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------- 79 (399)
T ss_pred HHHhhhHhHHHHHHhhCCChhhHH-HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--------
Confidence 445566677888899999999999 88999999999999999999999999999999888887777766554
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHH
Q 017485 245 GGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFF 324 (371)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (371)
.+.+...+...+.+.+.+.. .+....++.|.+|+++|+.+.++.+....++..+++.+.+.+.+..+|...+..
T Consensus 80 -----~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 153 (399)
T TIGR00893 80 -----GAYVSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153 (399)
T ss_pred -----cCHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 34555556666666665543 345557789999999999999999999999999999999988888887655554
Q ss_pred HHHHH-HHHHHHHHhccCCC
Q 017485 325 GGWVI-VMTTFMHLFLPETK 343 (371)
Q Consensus 325 ~~~~~-~~~~~~~~~~~~~~ 343 (371)
.++.. +..+...+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 154 EGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHHhhheecCCC
Confidence 44433 33344444455543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-13 Score=112.97 Aligned_cols=284 Identities=14% Similarity=0.118 Sum_probs=178.2
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHHhhhcC-
Q 017485 10 GIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTVGALFM- 88 (371)
Q Consensus 10 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~- 88 (371)
|+...+..|+.-+++.++. ++.+.=.|-.-.+.++|.+++..+++.+.+. +=+..|++....+++..++.++.
T Consensus 115 ~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 115 GLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp TTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHHHcC
Confidence 3444455566667666654 3445556666778888888888888877653 24677887776666555554333
Q ss_pred CCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHhhchhh
Q 017485 89 PETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINI 168 (371)
Q Consensus 89 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (371)
|+.++.....+. ...++++.+.++.. +..+.+.+|.+.+........++.
T Consensus 189 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~-~l~k~~~fw~~~l~v~g~~~~Y~v 238 (412)
T PF01306_consen 189 PDVPPQAEVADA-----------------------------LGAKKDKVSLKDVL-SLFKMRNFWFFVLFVIGVAAIYDV 238 (412)
T ss_dssp --SSSSS-SSTT-----------------------------SSS------HHHHH-HHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchhhhhhcc-----------------------------cccCCCCCcHHHHH-HHhcchhHHHHHHHHHHHHHHHHH
Confidence 343321101110 00111122334333 223334455555555555556666
Q ss_pred hHhhHHHHHHHhCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 017485 169 IGLYAPVLLRTLKLSE----SASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDH 244 (371)
Q Consensus 169 ~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (371)
+....|.|...+.-+. ...+ ...+...+..++.-.+..++.+|+|.|+.++++..++.+=....++.
T Consensus 239 fdqqf~~y~~~~f~~~~~g~~~~G-~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------- 309 (412)
T PF01306_consen 239 FDQQFPIYFASFFQSAGQGNQMYG-YLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------- 309 (412)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHhcccccChhHHh-HHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--------
Confidence 6666777776544433 3345 67788888999999999999999999999999999998888877765
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhhccc-chhh
Q 017485 245 GGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVCLVFIFFTAQTFLAMLCHFKA-GIFF 322 (371)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 322 (371)
++.+.....-.+-+.-+.....+. .-|+++.+|++..++...+. +....++..+.+.+.|.+.|+.|. ..++
T Consensus 310 -----~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyl 383 (412)
T PF01306_consen 310 -----TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYL 383 (412)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHH
Confidence 345555555555555554444333 46789999999999998886 466789999999999999999995 4666
Q ss_pred HHHHHHHHHHHHHHHhccCCCC
Q 017485 323 FFGGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
+.+.+.....++..+.+++.++
T Consensus 384 img~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 384 IMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHheeeecCCCc
Confidence 7776666666677777765444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=119.83 Aligned_cols=173 Identities=13% Similarity=0.135 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CchHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL-GRKILFLVGGIQMFVS 229 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~ 229 (371)
++.+....+.....+|.+..++|.++ +++|++..+++ .....+.....++.+++|+++||+ |||+.+.++.++..++
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg 89 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG 89 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 44444444555567788888999998 45799999988 778888888899999999999999 9999999998888877
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh--hhhhhhHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
.+.+... . ...........+...+.+.. .+...++++|.+|++ +|.++.++.+...++|+.++|.
T Consensus 90 ~lll~~~-----------~-~~~~~~~l~l~li~iG~G~~-~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 90 HVVLGAS-----------E-IHPSFLYLSLAIIVCGYGLF-KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHHh-----------h-cchhHHHHHHHHHHHhcccc-cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence 6554321 0 11111222222232333322 233346779999976 7999999999999999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHh
Q 017485 308 TFLAMLCHFKAGIFFFFGGWVIVMTTFMHLF 338 (371)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (371)
+.+++.+..+|...+..+++..+.+++.+..
T Consensus 157 l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 157 ACGYAQEEYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888766555555444444444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=122.58 Aligned_cols=292 Identities=10% Similarity=0.026 Sum_probs=148.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCc--ccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKH--RGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 79 (371)
++++|+++|++.|...+...+++.|++|+++ |....++++.+.++|..++|.+++++.+. .|||+.|++.++..+
T Consensus 115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~~F~i~~i~~~ 191 (500)
T PRK09584 115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSVAFALSVVGML 191 (500)
T ss_pred HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHH
Confidence 3578999999999999999999999998654 45678889999999999999999988764 469999999876544
Q ss_pred HHHHhh----hcCCCChhhHHhhCCChHHHHHHH-----------HHHhCccchHHHHHHHHHHhcccccccchhhh--h
Q 017485 80 ILTVGA----LFMPETPNSIIQRSNDPQKAKRML-----------QRVRGTADVEAELNDLIRASSISKTINHPFKK--I 142 (371)
Q Consensus 80 ~~~~~~----~~~~esp~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 142 (371)
+..+.+ ..++|.++. .++++.|...... ......+... ........... ......++ .
T Consensus 192 i~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~ 266 (500)
T PRK09584 192 ITVVNFAFCQRWVKQYGSK--PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEI--ARMALGVVALG-IVVIFGKEAFA 266 (500)
T ss_pred HHHHHHHHhHHHhccCCCC--CCccccchhhHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHH-HHHHHHHHHhh
Confidence 433322 223332110 0000011110000 0000000000 00000000000 00000000 0
Q ss_pred hhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH-----h-----CCCchhHHHHHHHHHHHHHHHHHHHH----HH
Q 017485 143 IQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT-----L-----KLSESASLLLSAVVTGGIGTVLTIIS----MI 208 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----g~~~~~~~~~~~~~~~~~~~~~~~~~----g~ 208 (371)
.++..+++.+..+.+. .....++......|..+.. . |.... .. .......+..++..++. ++
T Consensus 267 ~~~~~~~~~~~~~~~~--~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~-~~-~~~s~n~i~iil~~p~~~~~~~~ 342 (500)
T PRK09584 267 MKGAARRKMIVAFILM--LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVE-PE-QYQALNPFWIMIGSPILAAIYNK 342 (500)
T ss_pred cCHHHHHHHHHHHHHH--HHHHHHHHHHHHhccHHHHHHHHhccccccceEEC-HH-HHHHHhHHHHHHHHHHHHHHHHH
Confidence 0011122222222111 1112223333333333221 1 11111 22 34455555555555555 44
Q ss_pred HHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhh
Q 017485 209 LVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRS 288 (371)
Q Consensus 209 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 288 (371)
+.||.+..+.+.++.++.+++.+.+...... .+. ....+.+..+....+.+.+-. ...|....++.+..|++.||
T Consensus 343 l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~--~~~--~~~vs~~~~~~~~~l~~~ge~-~~~p~g~s~~~~~aP~~~rg 417 (500)
T PRK09584 343 MGDRLPMPHKFAIGMVLCSGAFLVLPLGAKF--AND--AGIVSVNWLIASYGLQSIGEL-MISGLGLAMVAQLVPQRLMG 417 (500)
T ss_pred hCcCCCcHHHHHHHHHHHHHHHHHHHHHHHh--cCC--CCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCcHHHHH
Confidence 4444445566777777777777666554211 010 011223344444444444433 44566667788999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 017485 289 AGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
..+|+......+++.++..+..
T Consensus 418 ~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 418 FIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887777777777766654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=118.16 Aligned_cols=163 Identities=10% Similarity=0.031 Sum_probs=123.0
Q ss_pred hhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 017485 166 INIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHG 245 (371)
Q Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (371)
.+......|.+.+++|.+..+.+ +......++..++.++.|.+.||+|||+.+..+.++..++.+.....
T Consensus 36 ~~~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--------- 105 (394)
T PRK10213 36 EFLPVSLLTPMAQDLGISEGVAG-QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--------- 105 (394)
T ss_pred HHHHHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH---------
Confidence 33444567888899999999998 88888899999999999999999999999999999988877665553
Q ss_pred CCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 017485 246 GFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFG 325 (371)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (371)
++.+..++...+.+.+.+.. .+....++.|.+|+++|+.+.++......++..++|.+.+.+.+..+|...+...
T Consensus 106 ----~~~~~l~~~r~l~G~~~g~~-~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 180 (394)
T PRK10213 106 ----NSFSLLLIGRACLGLALGGF-WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA 180 (394)
T ss_pred ----ChHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 34555555556666665543 3455667789999999999999999999999999999999999888876555444
Q ss_pred HHHHHHH-HHHHHhccCCC
Q 017485 326 GWVIVMT-TFMHLFLPETK 343 (371)
Q Consensus 326 ~~~~~~~-~~~~~~~~~~~ 343 (371)
++..+.. +......||++
T Consensus 181 ~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 181 AVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 3333332 23333456643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=118.29 Aligned_cols=168 Identities=10% Similarity=0.012 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH
Q 017485 147 YRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQM 226 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 226 (371)
++++..+...+.++........+...+|.+.++++.+..+.+ +......++..++.++.|++.||+|||+.+..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMS-NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344556556666666555567778888999999999999988 8888889999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
.++....... ++.+..++...+.+.+.+... +....++.|.+|+++|+.+.+..+....+++.++|
T Consensus 83 ~i~~~l~~~~-------------~~~~~~~~~~~l~G~~~g~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 83 ILAVAGLMFS-------------HSLALFSIAMFVLGVVSGITM-SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred HHHHHHHHHc-------------chHHHHHHHHHHHHHhhHhhc-cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 7776665543 234444455555555555443 33446668999999999999998888888999999
Q ss_pred HHHHHHHhh-cccchhhHHHHHHH
Q 017485 307 QTFLAMLCH-FKAGIFFFFGGWVI 329 (371)
Q Consensus 307 ~~~~~~~~~-~~~~~~~~~~~~~~ 329 (371)
.+.+.+.+. .+|...+...++..
T Consensus 149 ~~~~~l~~~~~gw~~~f~~~~~~~ 172 (394)
T PRK03699 149 IIAAYLLARSIEWYWVYACIGLVY 172 (394)
T ss_pred HHHHHHHhccccHHHHHHHHHHHH
Confidence 988887653 46665554444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=123.59 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 228 (371)
++.+..+.+..+.............|.+.+++|.+..+.+ .......++..++.++.|+++||+|||+.+..+.++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 97 (496)
T PRK03893 19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAA-SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV 97 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3445556666666666666777778888899999999888 788888899999999999999999999999988888877
Q ss_pred HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 229 SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
+.+..... .+.+...+...+.+.+.+... +....++.|.+|+++|+.+.++.+....++..+++.+
T Consensus 98 ~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 163 (496)
T PRK03893 98 GTLACGFA-------------PGYWTLFIARLVIGMGMAGEY-GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQV 163 (496)
T ss_pred HHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666553 334444555555555444332 3444667899999999999999999999999999999
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHHhccCC
Q 017485 309 FLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (371)
.+.+.+..+|...+.+.++..+..++.....||.
T Consensus 164 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 164 YSLVVPVWGWRALFFIGILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999888887665555444333333333444554
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-16 Score=138.74 Aligned_cols=306 Identities=15% Similarity=0.170 Sum_probs=3.0
Q ss_pred CchhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCC-----------------
Q 017485 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKG----------------- 63 (371)
Q Consensus 1 ~l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------------- 63 (371)
+|+++.++.|+|....++...+|+-|..++++-+.+.|+..+...+|+++|.++++.+.+...
T Consensus 143 ~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp 222 (539)
T PF03137_consen 143 VFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDP 222 (539)
T ss_dssp ---------SSS--------------------------------------------------------------------
T ss_pred HHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCc
Confidence 467899999999999999999999999999999999999999999999999999987764321
Q ss_pred Cc--chHHHHhhhHHHHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccc---cccch
Q 017485 64 GW--GWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISK---TINHP 138 (371)
Q Consensus 64 ~~--~Wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 138 (371)
.| .|..-|++.+.+.++..+.++++|+.-+-..+. .++.+.. +.+. .+.+.++. .+.+..+ +....
T Consensus 223 ~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~---~~~~~~~--~~~~---~~~~~~~~-~~~~~~~~~~~~~~d 293 (539)
T PF03137_consen 223 RWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSER---QEEKESS--ERKE---EDSDKDSF-KDPKSKKSFGKSIKD 293 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccc---cchhhhh--hcch---hhhhhhcc-cccccccchhhhhhh
Confidence 11 488888888888888887777777653211000 0000000 0000 00000000 0000000 11122
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC--c
Q 017485 139 FKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLG--R 215 (371)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r 215 (371)
+.+.+++..+++.+....+..........++..+.|.|+ .+++.++..+..+.......+.++|.+++|++.+|++ .
T Consensus 294 f~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~ 373 (539)
T PF03137_consen 294 FPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSA 373 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcH
Confidence 333344566777888888888888888899999999999 4689998888845555555688899999999999975 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH------------HhhhC---C-C----------------------CCCc---hhhHHH
Q 017485 216 KILFLVGGIQMFVSQVIIGSIM------------AAELG---D-H----------------------GGFS---EGYAYL 254 (371)
Q Consensus 216 r~~~~~~~~~~~~~~~~~~~~~------------~~~~~---~-~----------------------~~~~---~~~~~~ 254 (371)
|+.+....+...++.+.+...+ ...+. . . +.-+ ......
T Consensus 374 ~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~ 453 (539)
T PF03137_consen 374 RGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIP 453 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHH
Confidence 4444433333333332211100 00000 0 0 0000 011222
Q ss_pred HHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Q 017485 255 ILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCL-VFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 316 (371)
.++..++..+..+....|..... -..+|+++|+.+.|+...+.. +|..-+|.++|.+.|..
T Consensus 454 Fl~~~~~~~~~~~~~~~p~~~i~-LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 454 FLILLFILSFFTFMSQVPSTLIT-LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcccchheee-eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 33333333344444445554333 577899999999999887755 67788999999998865
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-14 Score=121.41 Aligned_cols=177 Identities=14% Similarity=0.086 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
........+.............|.+.+++|.+..+.+ +......++.+++.++.|+++||+|||+.+..+..+..++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 95 (406)
T PRK11551 17 IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMG-WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSL 95 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 3334444445555556677778888999999999988 888999999999999999999999999999998877777665
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
..... .+.+..++...+.+.+.+... +....++.|.+|+++|++++++.+....++..+++.+.+.
T Consensus 96 ~~~~~-------------~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 161 (406)
T PRK11551 96 ATAQA-------------WDFPSLLVARLLTGVGLGGAL-PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL 161 (406)
T ss_pred HHHHh-------------ccHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 334445555555555554333 4445677899999999999999999999999999988877
Q ss_pred HHhhcccchhhHHHHH-HHHHHHHHHHhccCCC
Q 017485 312 MLCHFKAGIFFFFGGW-VIVMTTFMHLFLPETK 343 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 343 (371)
+.+..+|...+...++ ..+...+...+.||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 162 AAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 7776666554444333 3333334445567653
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=122.37 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 150 QLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
..+..+.+..+.............|.+.+++|.+..+.+ +....+.++...+.+..|+++||+|||+.+..+..+..++
T Consensus 6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~-~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL-WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345556666666666777788889999999999998888 8888889999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeeccc-CchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEI-FPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
.+.++.. ++.+..++...+.+.+.+.. .+.....+.+. .|+++|+++.|+......++..++|.+
T Consensus 85 ~~~~~~a-------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l 150 (495)
T PRK14995 85 SLAAAFS-------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV 150 (495)
T ss_pred HHHHHHc-------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777664 34555555555666555433 23333333454 478999999999999999999999999
Q ss_pred HHHHHhhcccchhhHHH-HHHHHHHHHHHHhccCCC
Q 017485 309 FLAMLCHFKAGIFFFFG-GWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 343 (371)
.+.+.++.+|...+... .+..+..++..++.|+.+
T Consensus 151 gg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 151 GGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999988876544443 333444444555566643
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=120.55 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=121.4
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
...+........|.+..+.+.+..+.+ +......++.+++.++.|+++||+|||+.+..+.++..++..........
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-- 87 (365)
T TIGR00900 11 SLIGTAITQVALPLYVLAGTGSASVLS-LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL-- 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 334455566677888888899988888 88999999999999999999999999999998888777766655544110
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIF 321 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (371)
...+.+..++...+.+.+.+.. .+....+..|.+|+++|+.+.++.+....++..++|.+.+.+.+..++...
T Consensus 88 ------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~ 160 (365)
T TIGR00900 88 ------GGLNIWQVYVLAGILAIAQAFF-TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWA 160 (365)
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 0013455555555555555433 345567789999999999999999999999999999999999888887655
Q ss_pred hHHHHHHHHHHHH
Q 017485 322 FFFGGWVIVMTTF 334 (371)
Q Consensus 322 ~~~~~~~~~~~~~ 334 (371)
+...++..+...+
T Consensus 161 ~~~~~~~~~~~~~ 173 (365)
T TIGR00900 161 IWVDAVGFAISAL 173 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444443333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-14 Score=122.64 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=123.6
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
.+......+....|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 80 (379)
T TIGR00881 6 AYYLVRKNFALAMPYLVEEIGLSKTDLG-LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---- 80 (379)
T ss_pred HHHHhHHhhhhhhHHHHHHhCCCHhHHH-HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----
Confidence 3334556677778888899999999999 88899999999999999999999999999999988888887776654
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhhcccc
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQ-TFLAMLCHFKAG 319 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 319 (371)
.+.+..++...+.+.+.+.. .+....++.|.+|+++|+.+.++.+....++..+++. +.+.+.+..++.
T Consensus 81 ---------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 150 (379)
T TIGR00881 81 ---------TSLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWH 150 (379)
T ss_pred ---------hhHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCch
Confidence 33445555555555555543 3455677799999999999999999999999999994 555555555665
Q ss_pred hhhHH-HHHHHHHHHHHHHhccCC
Q 017485 320 IFFFF-GGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 320 ~~~~~-~~~~~~~~~~~~~~~~~~ 342 (371)
..+.. +.+..+..++..++.+|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 151 WVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hHHHHHHHHHHHHHHHHheeeCCC
Confidence 44443 333444444555555554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=118.03 Aligned_cols=178 Identities=13% Similarity=0.127 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
+.......+....+........|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLH-IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3344444455555666677789999999999998888 888888999999999999999999999999998888777766
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
.+... ++.+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+.+.
T Consensus 84 ~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~ 149 (392)
T PRK10473 84 LCSLA-------------ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL 149 (392)
T ss_pred HHHHh-------------CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 22333344444444444332 23445677899999999999999999999999999999888
Q ss_pred HHhhcccchhh-HHHHHHHHHHHHHHHhccCCCC
Q 017485 312 MLCHFKAGIFF-FFGGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 312 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
+.+..+|...+ +.+.+..+..++.....||+++
T Consensus 150 l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 150 IMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 77777765443 4444444444555566676543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=120.00 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
.++...+..+......+.+..+.|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMH-MVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 34555566666666777788899999999999999888 77788888999999999999999999999988877777666
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
+..... ++.+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+.+
T Consensus 90 ~~~~~~-------------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 90 LFCALS-------------GTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHHHh-------------CCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 554432 23444455555555555433 3455566789999999999999999999999999999999
Q ss_pred HHHhhcccchhhHHHHH-HHHHHHHHHHhccCC
Q 017485 311 AMLCHFKAGIFFFFGGW-VIVMTTFMHLFLPET 342 (371)
Q Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 342 (371)
.+.++.+|...+..... ..+..+......|+.
T Consensus 156 ~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 156 LLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99988886544444333 333333444444543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=116.64 Aligned_cols=177 Identities=11% Similarity=-0.022 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
++......+.............|.+.+++|.+..+.+ +......++..++.++.|++.||+|||+.+..+..+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHh-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 3344444444445556677788999999999999988 888999999999999999999999999999999988888877
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
..... ++.+..++...+.+.+.+... +....+..|.+|+++|+.++++......++..+++.+.+.
T Consensus 84 l~~~~-------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 84 MFTLS-------------SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHHh-------------CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 66554 334555555555555544332 3334566888999999999999988899999999999888
Q ss_pred HHhhcccchhhHHHHH-HHHHHHHHHHhccCCC
Q 017485 312 MLCHFKAGIFFFFGGW-VIVMTTFMHLFLPETK 343 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 343 (371)
+.+..+|...+...++ ..+..+......||.+
T Consensus 150 l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 150 LSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8887777654444433 3333334445577654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-13 Score=116.79 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=121.6
Q ss_pred hchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 017485 164 TGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGD 243 (371)
Q Consensus 164 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (371)
.........+|.+.++++.+..... .....+.++..++.++.|+++||+|||+++..+..+..++.+.....
T Consensus 30 ~~~~~~~p~l~~i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------- 101 (413)
T PRK15403 30 LTTDLIQPGIINVVRDFNADVSLAP-ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------- 101 (413)
T ss_pred HHHHhhccCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------
Confidence 3344455556777789999999888 88888899999999999999999999999999888777776665553
Q ss_pred CCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhH
Q 017485 244 HGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFF 323 (371)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (371)
++.+..++..++.+.+.+. ..+..+.+..|.+|+++|++++++.+....++..++|.+.+.+.++.+|...+.
T Consensus 102 ------~~~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~ 174 (413)
T PRK15403 102 ------TSMTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA 174 (413)
T ss_pred ------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3344455555555554432 233445667899999999999999999999999999999988888777765555
Q ss_pred HHHHHHHHHH-HHHHhccCCCC
Q 017485 324 FGGWVIVMTT-FMHLFLPETKN 344 (371)
Q Consensus 324 ~~~~~~~~~~-~~~~~~~~~~~ 344 (371)
..++..+... ...+..||+++
T Consensus 175 ~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 175 IIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHhCCCCcc
Confidence 4444433333 33455787643
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=122.92 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
+..+.+..+.............|.+.+++|.+..+.+ +....+.++.+++.++.|+++||+|||+.+..+.++..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQ-WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3344455555555666777889999999999998888 888999999999999999999999999999999888887776
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
..... ++.+..++...+.+.+.+. ..+....++.|.+|++.|+.+.++......++..++|.+.+.
T Consensus 83 ~~~~~-------------~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 83 LCGVA-------------PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred HHhCc-------------CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence 66543 3344455555555555443 334556777999999999999999999999999999999999
Q ss_pred HHhhcccchhhHHHH-HHHHHHHHHHHhccCCC
Q 017485 312 MLCHFKAGIFFFFGG-WVIVMTTFMHLFLPETK 343 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 343 (371)
+.++.+|...+.... +..+..++..+..||++
T Consensus 149 l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 149 IIENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 988888654444433 33333344445556543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=118.00 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHH---hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCchHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRT---LKLSESASLLLSAVVTGGIGTVLTIISMILVDK-LGRKILFLVGGIQM 226 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~ 226 (371)
.++.+....+....+++....++|.|+++ +|.+..+++ .......++..++.+++|+++|| +|||+.+..+.++.
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag-~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAF-IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 34455556666667888888999999864 799999999 88899999999999999999999 89999999999888
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhh---hhhhhHHHHHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEI---RSAGQSITVAVCLVFIF 303 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~~~~ 303 (371)
.++.+.+... .+.+...+...+.+.+.+. ..+....+.+|.+|++. |+++.++.+...++|..
T Consensus 90 ~~g~~~~~~~-------------~~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ 155 (475)
T TIGR00924 90 MLGHFMLAMS-------------IYPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF 155 (475)
T ss_pred HHHHHHHHhc-------------ccHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH
Confidence 8887766553 2233333444444444443 33444566688888754 88899999999999999
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHh
Q 017485 304 FTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLF 338 (371)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (371)
++|.+.+.+.++.++...+...++..+.+.+.+..
T Consensus 156 ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 156 ISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888766555555444444444444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=115.94 Aligned_cols=145 Identities=10% Similarity=-0.026 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
+.......+......+....+.|.+.+++|.+..+.+ .......++..++.++.|+++||+|||+.+..+.++..++.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~ 116 (476)
T PLN00028 38 FHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIG-NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVF 116 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3334444444445556666777888899999999888 777888889999999999999999999999888877777665
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
..... .+.+..++..++.+++.+. ..+. ..+++|.+|+++|+.++|+.+....+++.+++.+.+.
T Consensus 117 ~~~~~-------------~s~~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 117 CMSLV-------------SSATGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL 181 (476)
T ss_pred HHHHh-------------cCHHHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 2233333444444444432 2232 3456899999999999999988888887777666554
Q ss_pred H
Q 017485 312 M 312 (371)
Q Consensus 312 ~ 312 (371)
+
T Consensus 182 i 182 (476)
T PLN00028 182 V 182 (476)
T ss_pred H
Confidence 4
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=113.83 Aligned_cols=173 Identities=13% Similarity=0.111 Sum_probs=121.1
Q ss_pred HHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 017485 154 AILIPFFQQVTGINIIGLYAPVLLRTLKLSESAS-----LLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 228 (371)
...+..+....+......++|.+.+++|.+..+. + .......+...++.++.|+++||+|||+.+..+.+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 96 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSG-LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI 96 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence 3444445555566667778999999988886543 4 677788889999999999999999999999988877777
Q ss_pred HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 229 SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
+...+... ++.+..++...+.+.+.+ ..+....+..|.+|+++|+.+.++.+....++..++|.+
T Consensus 97 ~~~~~~~~-------------~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (408)
T PRK09874 97 VMVLMGLA-------------QNIWQFLILRALLGLLGG--FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLA 161 (408)
T ss_pred HHHHHHHH-------------hhHHHHHHHHHHHHHhhh--hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66555442 233444444444444322 234444566788999999999999999999999999999
Q ss_pred HHHHHhhcccchhhHHH-HHHHHHHHHHHHhccCC
Q 017485 309 FLAMLCHFKAGIFFFFG-GWVIVMTTFMHLFLPET 342 (371)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 342 (371)
.+.+.+..++...+... .+..+..+...++.||.
T Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 162 GGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99988877765444433 33333444444555654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=116.59 Aligned_cols=180 Identities=21% Similarity=0.177 Sum_probs=120.1
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHh-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTL-----KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
..+..+........+....|.+-.+. ..+..+.+ +......++.+++.++.|+++||+|||+.+..+.++..++
T Consensus 21 ~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~ 99 (502)
T TIGR00887 21 AGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSA-AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIA 99 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 33333333333333444455443322 22333445 7888889999999999999999999999999888888877
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
.++..... +. .+..+....++...+.+++.+... +....+..|.+|++.|++++++.+....+|..+++.+.
T Consensus 100 ~~~~~~~~-----~~--~~~~~~~~~~~~r~l~G~~~g~~~-~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 100 TVASGLSP-----GS--SPKSVMATLCFWRFWLGVGIGGDY-PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHcc-----Cc--ccchHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555431 00 000113455566666666666444 44468889999999999999999999999988888776
Q ss_pred HHHHh-----------------------hcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 310 LAMLC-----------------------HFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 310 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
..+.. ..+|+..+.+.++..+...+..+++||+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 55432 12466666666666666666677889973
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-13 Score=114.75 Aligned_cols=174 Identities=15% Similarity=0.087 Sum_probs=121.7
Q ss_pred HHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
..................|.+.+++|.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+....
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 92 (394)
T PRK11652 14 VLLVAVGQMAQTIYVPAIADMARDLNVREGAVQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF 92 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 333333333444555567888899999999998 8888999999999999999999999999999888777776665544
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
. ++.+..++...+.+.+.+.. .+....+..|.++.++++.+.+..+....++..++|.+.+.+.+.
T Consensus 93 ~-------------~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 93 A-------------HSLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred H-------------ccHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 22334444444444443322 233445567888889999999998888899999999999988887
Q ss_pred cccchhhHHHHH-HHHHHHHHHHhccCCCC
Q 017485 316 FKAGIFFFFGGW-VIVMTTFMHLFLPETKN 344 (371)
Q Consensus 316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 344 (371)
.+|...+...++ ..+......++.||+++
T Consensus 159 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 159 FGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 777654444333 33334444556677543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-11 Score=102.07 Aligned_cols=268 Identities=13% Similarity=0.036 Sum_probs=170.7
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTV 83 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 83 (371)
+.-.+.|+|.+...+...++++|..|+|+|++..++......+|.+++..+.+.+.+..+...-..++...++..++..+
T Consensus 94 l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ 173 (403)
T PF03209_consen 94 LAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNL 173 (403)
T ss_pred HHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999877666543311122222223333333333
Q ss_pred hhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHh
Q 017485 84 GALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQV 163 (371)
Q Consensus 84 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (371)
+..+=.|.++ +++ . ...++++.+....++++..++..++.+..+.+..+..
T Consensus 174 ia~wg~E~r~----~~~--~----------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~- 224 (403)
T PF03209_consen 174 IALWGQEPRR----SRR--A----------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAF- 224 (403)
T ss_pred HHHHhcccCC----ccc--c----------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHH-
Confidence 3222223211 000 0 0000111112334455555555555554444433321
Q ss_pred hchhhhHhhH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 164 TGINIIGLYA-PVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVD-KLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
+.--..+ |+=-+-+|++..+.. -++...+.+.++|-...|++.. |.++++....++....++...+....
T Consensus 225 ---~~QD~iLEPygg~Vfgmsv~eTT-~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~---- 296 (403)
T PF03209_consen 225 ---FMQDVILEPYGGEVFGMSVGETT-RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG---- 296 (403)
T ss_pred ---HhhHHHcCCchhHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH----
Confidence 2212222 222356899999998 8899999999999999998887 67777777788877777776655542
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
...+.+.......+++++.+....... ..+.++.+++..|+.+|.-...+.+...++..+.+.+.|.
T Consensus 297 ------~~~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 297 ------PLGSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred ------hcccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113455566666666666655444333 3345787888899999999998888888888888777663
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=112.36 Aligned_cols=145 Identities=17% Similarity=0.068 Sum_probs=109.3
Q ss_pred HHHHHHHHHhhchhhhHhhHHH-HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 017485 154 AILIPFFQQVTGINIIGLYAPV-LLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVI 232 (371)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 232 (371)
...+..+..+...+.+..+.|. +.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLG-NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhh-HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3444555555666778888896 6688999999999 8889999999999999999999999999999998888888776
Q ss_pred HHHHHHhhhCCCCCCchh-hHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 233 IGSIMAAELGDHGGFSEG-YAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
+... . +.+..++...+.+.+.+ ... ....++.|.+|+++|+.+.++......++..+++.+.+.
T Consensus 84 ~~~~-------------~~~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 84 AGLA-------------VQSYSVLLLLRLFIGIAGG-SFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred HHHH-------------hhhHHHHHHHHHHHHHhch-hhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6554 2 34444444444444432 233 334667899999999999999887777777777776665
Q ss_pred HHh
Q 017485 312 MLC 314 (371)
Q Consensus 312 ~~~ 314 (371)
+..
T Consensus 149 l~~ 151 (366)
T TIGR00886 149 IIG 151 (366)
T ss_pred HHH
Confidence 554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=119.00 Aligned_cols=171 Identities=16% Similarity=0.061 Sum_probs=120.9
Q ss_pred HhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 162 QVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
...+........|.+.++.+.+..+.+ +......++.+++.++.|+++||+|||+.+..+..+..++...+......
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~-- 105 (417)
T PRK10489 29 SIFGLGLLGVAVPVQIQMMTGSTLQVG-LSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL-- 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--
Confidence 334445667778888888888888888 89999999999999999999999999999988777666665544332110
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIF 321 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (371)
..++.+...+...+.+.+.+... +....+..|..|+++|+++.++.+....++..++|.+.+.+.+..++...
T Consensus 106 ------~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~ 178 (417)
T PRK10489 106 ------PEPSLLAIYLLGLWDGFFGSLGV-TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWN 178 (417)
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHH
Confidence 01223333344444444433332 33345668999999999999999999999999999999998887776555
Q ss_pred hHHHHHHHHHHHHHHHhccCC
Q 017485 322 FFFGGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ 342 (371)
+.+.++..+...+..+..|++
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 179 YGLAAAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 555555555555555666654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-13 Score=112.19 Aligned_cols=163 Identities=12% Similarity=-0.030 Sum_probs=117.1
Q ss_pred hhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 017485 166 INIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHG 245 (371)
Q Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (371)
...+...+|.+.+++|.+..+.+ +..+...++..++.+..|+++||+|||+.+.........+. ......
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~~-------- 76 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELG-LLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLDP-------- 76 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHh--------
Confidence 34566778889999999999988 88888899999999999999999999987654443333322 111110
Q ss_pred CCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHH-
Q 017485 246 GFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFF- 324 (371)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (371)
.+....++...+.+.+.+. .. ......+|.+|+++|++++++.+....+|..+++.+.+.+.++.+|...+..
T Consensus 77 ----~~~~~l~~~R~l~G~g~~~-~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 77 ----FNYEWLLACQLLAALGQPF-LL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred ----ccHHHHHHHHHHHHhHhHH-HH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 2344555555555555543 22 2234447889999999999999999999999999999999888888765555
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 017485 325 GGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~ 344 (371)
+++..+..++.++++||+++
T Consensus 151 ~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 44445555566677887543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=116.53 Aligned_cols=189 Identities=12% Similarity=0.005 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHh--------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTL--------KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGG 223 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 223 (371)
.+...+..+........+....|.+.+.+ +.+..+.+ +......++.+++.++.|+++||+|||+++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~ 92 (479)
T PRK10077 14 TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLG-FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAA 92 (479)
T ss_pred HHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33334444433333333444445554544 67777778 8889999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHH
Q 017485 224 IQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIF 303 (371)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 303 (371)
.+..++.+..+.......... ..+.......++..++.+.+.+.. .+....+++|.+|+++|+.++++.+....+|..
T Consensus 93 ~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~ 170 (479)
T PRK10077 93 VLFFISALGSAWPEFGFTSIG-PDNTGYVPEFVIYRIIGGIGVGLA-SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL 170 (479)
T ss_pred HHHHHHHHHHHhhcccccccc-ccchhHHHHHHHHHHHHhhhHhHH-hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence 888777665544210000000 001111233444555555555543 345567789999999999999999888888888
Q ss_pred HHHHHHHHHH--------hhcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 304 FTAQTFLAML--------CHFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 304 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
+++.+...+. +..+|+..+...++..++..+..+++||++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~ 218 (479)
T PRK10077 171 VVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETP 218 (479)
T ss_pred HHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 8776554432 234565555555444444555566778764
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.2e-13 Score=114.35 Aligned_cols=165 Identities=12% Similarity=-0.031 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
++...+..+....+.......+|.++ +++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.+...++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g-~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVG-IAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG 95 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHH-HHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence 33344444444445555566677655 78999999999 89999999999999999999999999999998877766554
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
+.......... ....+.+..++...+.+.+.+... +....+..|.+|+++|++++++.......+..++|.+.+
T Consensus 96 ~~~~~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 96 LAYLLAAILPV-----SAPFKFALLVVGRLILGFGESQLL-TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HHHHhhhcccc-----chhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 43322210000 001233444444555555544322 333456678899999999999998888899999999998
Q ss_pred HHHhhcccchhhH
Q 017485 311 AMLCHFKAGIFFF 323 (371)
Q Consensus 311 ~~~~~~~~~~~~~ 323 (371)
.+.+..++.....
T Consensus 170 ~l~~~~g~~~~~~ 182 (392)
T PRK12382 170 LLHSHFGFAALAL 182 (392)
T ss_pred HHHhccChHHHHH
Confidence 8888777654333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=115.66 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=109.6
Q ss_pred hhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 017485 168 IIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGF 247 (371)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (371)
.+....|.+.++ |.+..+.+ +......++..++.++.|+++||+|||+++..+.++..++.+.+.....
T Consensus 47 ~~~~~~p~l~~~-g~s~~~~g-~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~--------- 115 (452)
T PRK11273 47 NFALAMPYLVEQ-GFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--------- 115 (452)
T ss_pred HHHHhhHHHHHc-CCCHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------
Confidence 355667877776 99999888 8889999999999999999999999999999988888777766655310
Q ss_pred chhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHhhcccchhhHH-H
Q 017485 248 SEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF-LAMLCHFKAGIFFFF-G 325 (371)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~ 325 (371)
...+.+..++...+.+.+.+....+. ...+.|.+|+++|++++|+.+....+++.+.+++. ..+....+|...+.+ +
T Consensus 116 ~~~~~~~~~~~~~l~gi~~g~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~ 194 (452)
T PRK11273 116 ATSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPA 194 (452)
T ss_pred ccccHHHHHHHHHHHHHHHhccchHH-HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 00123344444455555555443333 34457889999999999999888888875544433 223223355444433 3
Q ss_pred HHHHHHHHHHHHhccCCC
Q 017485 326 GWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~ 343 (371)
.+..+..++..++.||++
T Consensus 195 ~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 195 FAAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHHHHccCCH
Confidence 334444455556667653
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=112.94 Aligned_cols=167 Identities=14% Similarity=0.080 Sum_probs=119.3
Q ss_pred hhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 017485 163 VTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELG 242 (371)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (371)
......+....|.+.++++.+..+.+ .......++..++.++.|.++||+|||+.+..+.....++.......
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------ 98 (406)
T PRK15402 26 YIANDMIQPGMLAVVEDFNAGAEWVP-TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA------ 98 (406)
T ss_pred HhhhhhHhcchHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------
Confidence 33445555567778899999998888 77888999999999999999999999999998887777776665543
Q ss_pred CCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 017485 243 DHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFF 322 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (371)
++.+..+....+.+.+.+.. .+....++.|.+|++.|..+.++......++..++|.+.+.+.+..+|...+
T Consensus 99 -------~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~ 170 (406)
T PRK15402 99 -------QSIEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMF 170 (406)
T ss_pred -------ccHHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 23334444444444443322 2344566689999999999999988888889999999999888877765544
Q ss_pred HHHHHH-HHHHHHHHHhccCCCC
Q 017485 323 FFGGWV-IVMTTFMHLFLPETKN 344 (371)
Q Consensus 323 ~~~~~~-~~~~~~~~~~~~~~~~ 344 (371)
.+.+++ .+..+...+..||+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 171 VLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc
Confidence 443333 3333334455676543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=113.48 Aligned_cols=170 Identities=12% Similarity=-0.073 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
+..+.+..+....+.......+|.++ +++|.+..+.+ +..+...++..++.++.|+++||+|||+++..+.+...++.
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (399)
T PRK05122 17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAG-LVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSG 95 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH-HHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHH
Confidence 44455555555556666677788765 67899999988 89999999999999999999999999999999888777665
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
+.+....... +....+....++..++.+.+.+.. .+....+..|.+|+++|+++.++......++..+++.+.+
T Consensus 96 ~~~~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 169 (399)
T PRK05122 96 LLYLLAGLLA-----AWPVLSLLLLLLGRLLLGIGESLA-GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV 169 (399)
T ss_pred HHHHHhhhhh-----ccchhHHHHHHHHHHHHHhhHHhh-cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH
Confidence 5444321100 000012233444445555555433 3343455678899999999999988888889899999999
Q ss_pred HHHhhcccchhhHHHHHH
Q 017485 311 AMLCHFKAGIFFFFGGWV 328 (371)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~ 328 (371)
.+.+..++...+....+.
T Consensus 170 ~l~~~~g~~~~~~~~~~~ 187 (399)
T PRK05122 170 LLYHWGGLAGLGLLIMLL 187 (399)
T ss_pred HHHHcccHHHHHHHHHHH
Confidence 888887876554444433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=114.26 Aligned_cols=175 Identities=12% Similarity=0.098 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCchHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK-LGRKILFLVGGIQMFVS 229 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~ 229 (371)
++.+....+....++|....+++.|+ +++|.+..+.. .....+.....+..+++|+++|| +|||+.+..+.++..++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~-~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g 94 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAF-ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG 94 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence 44444455556677888888888887 66999988887 67777777777778899999999 99999999999999998
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh--hhhhhhHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
.+.++... .......+...+.+.+.+... |....++.|.+|++ +|+.+.++.+...++|..++|.
T Consensus 95 ~~~~~~~~------------~~~~ll~~~~~l~~ig~g~~~-~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 95 YFMTGMSL------------LKPDLIFIALGTIAVGNGLFK-ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHHhc------------cchhHHHHHHHHHHhcccccc-CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 87776541 112223234444444444333 44457779999887 4577899999999999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHhcc
Q 017485 308 TFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
+.+.+.++.+|+..+....+..+.+++.+...+
T Consensus 162 l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 162 LAPVIADKFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999988876555555444444444444433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=118.11 Aligned_cols=182 Identities=13% Similarity=0.064 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 228 (371)
++.++...+...........+....|.+.+ .|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELG-FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhH-HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 344454555455444444445566676654 699999888 888899999999999999999999999998888777777
Q ss_pred HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 229 SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
+.+....... ...+.....+...+.+.+.+....+. ...+.|.+|+++|++++++.+....+++.+++.+
T Consensus 104 ~~~~~~~~~~---------~~~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l 173 (438)
T TIGR00712 104 VMLLMGFVPW---------ATSSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLL 173 (438)
T ss_pred HHHHHhcccc---------ccchHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHH
Confidence 6655443210 00122333344445555554444333 3556789999999999999999999999999888
Q ss_pred HHHHHh-hcccchhhHH-HHHHHHHHHHHHHhccCC
Q 017485 309 FLAMLC-HFKAGIFFFF-GGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 309 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 342 (371)
.+...+ ..+|...+.. ..+..+..++..++.||+
T Consensus 174 ~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 174 VLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 776554 3456554444 444444445555666664
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-12 Score=111.12 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=120.3
Q ss_pred HHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 158 PFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
..+....+.+....+.|.++ +++|.+..+.+ +......+...+..++.|+++||+|||+.+..+..+..++.+.+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-l~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 96 (400)
T PRK11646 18 DNMLVVLGFFVVFPLISIRFVDQLGWAAVMVG-IALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 33334445555566666655 77899999999 88888888888889999999999999999999988888877766543
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
++.+...+...+.+.+.+. ..+....++.|.+|+++|+++.|+.+....++..++|.+.+.+. ..
T Consensus 97 -------------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~ 161 (400)
T PRK11646 97 -------------HEPWLLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY 161 (400)
T ss_pred -------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 2344444444555544432 23444566789999999999999999999999999999999988 55
Q ss_pred ccchhhHHH-HHHHHHHHHHHHhccCC
Q 017485 317 KAGIFFFFG-GWVIVMTTFMHLFLPET 342 (371)
Q Consensus 317 ~~~~~~~~~-~~~~~~~~~~~~~~~~~ 342 (371)
++...+.+. ....+..++..++.||.
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 654444433 33333333444555653
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=112.78 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=119.0
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
+.+..+....+........+.+.++++.+....+ +....+.+...+..++.|+++||+|||+++..+..+..++.+.+.
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQP-LLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 3344444333344445555666788888888777 888899999999999999999999999999999888877666544
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
.. .+. ++...+.+.+.+ ...|...+++.|.+|+++|+++.|+.+....++..++|.+.+.+.+
T Consensus 87 ~~-------------~~~---~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 87 FG-------------IHP---LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred HH-------------HHH---HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 111 233334444443 3446667788999999999999999999999999999999999887
Q ss_pred hcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 315 HFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.. +...+...+.+.+...+..+.+||.+
T Consensus 150 ~~-~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 150 PH-AEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 54 33333333333333344455667643
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-12 Score=110.98 Aligned_cols=162 Identities=15% Similarity=0.028 Sum_probs=114.1
Q ss_pred hhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 017485 166 INIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHG 245 (371)
Q Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (371)
...+....|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 22 ~~~~~p~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 91 (401)
T PRK11043 22 TDMYLPAFKAIQADLQTSASAVS-ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV--------- 91 (401)
T ss_pred HHHHHhhHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh---------
Confidence 33444445556788999999998 88889999999999999999999999999998887777666655443
Q ss_pred CCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 017485 246 GFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFG 325 (371)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (371)
++.+..++...+.+.+.+... +....+..|.+|+++++...+..+....++..++|.+.+.+.+..+|...+...
T Consensus 92 ----~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 92 ----ESAAQLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred ----cCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 233344444444444333222 233356688999998888888888888899999999999998888876555444
Q ss_pred HHHHHHHHHHHHhccCC
Q 017485 326 GWVIVMTTFMHLFLPET 342 (371)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ 342 (371)
....+...+..++.+|.
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 167 FAITLLLILPTLRLKPS 183 (401)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 44444444444444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-13 Score=118.60 Aligned_cols=165 Identities=18% Similarity=0.110 Sum_probs=118.5
Q ss_pred hhhHhhHHHHHHHhCCC--------chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 017485 167 NIIGLYAPVLLRTLKLS--------ESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMA 238 (371)
Q Consensus 167 ~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 238 (371)
..+....|....+.+.+ ..+.+ +......++..++.++.|+++||+|||+.+..+.++..++.++.....
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~- 122 (481)
T TIGR00879 45 GVIGGALALPAFEFKFTSANSDSYSSSLWG-LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA- 122 (481)
T ss_pred chhhhhhhcHHHHHhcCCcccCCCChhHHH-HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-
Confidence 33444556555565555 67777 888899999999999999999999999999998888887776665431
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHhh
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF---LAMLCH 315 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 315 (371)
...+.+..++...+.+.+.+... +....++.|.+|+++|+.+.++.+....+|..+++.+. ....+.
T Consensus 123 ---------~~~~~~~~~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 192 (481)
T TIGR00879 123 ---------FALSVEMLIVGRVLLGIGVGIAS-ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT 192 (481)
T ss_pred ---------cccchHHHHHHHHHHHhhhhHHH-hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 11222345555566666555433 44567789999999999999999999999999999987 444445
Q ss_pred cccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 316 FKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.+|...+.+.++..+..++..+++||++
T Consensus 193 ~~w~~~f~~~~~~~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 193 LGWRIPLGLQLIPAGLLFLGLFFLPESP 220 (481)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 5666555555555555555666677753
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-13 Score=115.59 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=121.6
Q ss_pred hhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 017485 167 NIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGG 246 (371)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (371)
......+|.+.+++|.+..+.+ .......++..++.++.|+++||+|||+.+..+.++..++...+...
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---------- 76 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---------- 76 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445677888899999999999 88888999999999999999999999999999888888877766553
Q ss_pred CchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHH-H
Q 017485 247 FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFF-G 325 (371)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 325 (371)
++.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|...+.. +
T Consensus 77 ---~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 77 ---QTIDQLIYMRFLHGLAAAAA-SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred ---ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 23344444455555544433 334456778999999999999999999999999999999999888777554444 3
Q ss_pred HHHHHHHHHHHHhccCCC
Q 017485 326 GWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~ 343 (371)
.+..+..+...++.||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 153 LAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHhCCccC
Confidence 334444444555666653
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=116.50 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=120.5
Q ss_pred HhhchhhhHhhHH-HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 162 QVTGINIIGLYAP-VLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
............| .+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---- 82 (352)
T PF07690_consen 8 SGFGFSIISPALPLYLAEELGLSPSQIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---- 82 (352)
T ss_dssp HHHHHHHHHHHHH-HHHCCSTTTSHCHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh----
Confidence 3344455666777 66688999999999 88889999999999999999999999999999988888884444432
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGI 320 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
.+.+..++..++.+.+.+.. .+....++.|.+|+++|+.+.++.+....++..+++.+.+.+.+..++..
T Consensus 83 ---------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~ 152 (352)
T PF07690_consen 83 ---------SNFWLLLIARFLLGIGSGFF-SPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRW 152 (352)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCC
T ss_pred ---------hhHHHHhhhccccccccccc-cccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccc
Confidence 22335555566666655433 34556778999999999999999999999999999999999887777655
Q ss_pred hhHHHHHHHHHHHH-HHHhccC
Q 017485 321 FFFFGGWVIVMTTF-MHLFLPE 341 (371)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~ 341 (371)
.+...++..+...+ ...+.++
T Consensus 153 ~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 153 AFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCC--
T ss_pred ccccccchhhhhhhhHhhhhhh
Confidence 54444444444333 3344443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-12 Score=110.89 Aligned_cols=151 Identities=11% Similarity=0.035 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
++.+.+..+............+|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G-~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~ 86 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVG-VVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA 86 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666777788899999999999998888 999999999999999999999999999999998888887776
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
..... ++.+...+...+.+.+.+... +.......+..|+++|+.+++..+....+|..+++.+.+.
T Consensus 87 ~~~~~-------------~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 87 GLGLM-------------VGFWSWLAWRFVAGIGCAMIW-VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHh-------------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 65553 334455555555555544332 3222334577788999999999999999999999999888
Q ss_pred HHhhcc
Q 017485 312 MLCHFK 317 (371)
Q Consensus 312 ~~~~~~ 317 (371)
+.+...
T Consensus 153 l~~~~~ 158 (381)
T PRK03633 153 VSTELM 158 (381)
T ss_pred cccccc
Confidence 766543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-13 Score=116.00 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=116.1
Q ss_pred chhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 017485 165 GINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDH 244 (371)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (371)
..+......|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.+.....
T Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-------- 88 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGVGVTAVA-IWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA-------- 88 (377)
T ss_pred HHhhhhhHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH--------
Confidence 355677788999999999999999 88999999999999999999999999999999988888887666654
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHH
Q 017485 245 GGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFF 324 (371)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (371)
++.+..++...+.+.+.+...... .....|.+| ++|+.+.++......++..+++++.+.+.+..+|...+..
T Consensus 89 -----~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 89 -----DSLAALYLTYGLASAGVGIAYGIA-LNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred -----HHHHHHHHHHHHHhHHHHHHHHhH-HHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 334444455555555544333222 234466666 6799999999888888888877777777777776654444
Q ss_pred HHH-HHHHHHHHHHhccC
Q 017485 325 GGW-VIVMTTFMHLFLPE 341 (371)
Q Consensus 325 ~~~-~~~~~~~~~~~~~~ 341 (371)
.++ ..+..+...++.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHHHHHHHHHHheec
Confidence 433 33334444444543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=113.48 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=110.8
Q ss_pred hhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 017485 167 NIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGG 246 (371)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (371)
+.+..+.|.+.+++|.+..+.+ +......+...++.++.|+++||+|||+.++.+.++..++.+.++..
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------- 104 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETA-WISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS---------- 104 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHH-HHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh----------
Confidence 4567778888999999999888 77777778888899999999999999999998887777766665443
Q ss_pred CchhhHHHHHHHH-HHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 017485 247 FSEGYAYLILVLV-CVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFG 325 (371)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (371)
.+.+..+... .+.+.+.+....+ ...++.+.+| ++|+++.|+.+....++..++|.+.+.+.+..+|...+...
T Consensus 105 ---~~~~~l~~~~~~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 105 ---SNVIELYLTAGFITGLGLAFNFQP-SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred ---hhHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 2222222222 3334444433333 3355578775 78999999999999999999999999998888876555554
Q ss_pred HHHHHHHHHHH
Q 017485 326 GWVIVMTTFMH 336 (371)
Q Consensus 326 ~~~~~~~~~~~ 336 (371)
+++.+.+.+..
T Consensus 180 ~~~~~~~~v~~ 190 (455)
T TIGR00892 180 GGLLLHCCVCG 190 (455)
T ss_pred HHHHHHHHHHH
Confidence 44444333333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-14 Score=115.14 Aligned_cols=181 Identities=15% Similarity=0.028 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
.+..+.+....+..--+.+....+..-+.++.+....+ ++.....+..+++++++|+++||++|+.++.+|..+..++.
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~G-ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELG-LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhcc-chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 34445555555555566666666777677899999999 99999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
+..++. .+.|...+...+.+.+-+ .+.|+...+++|.+|..+|+++.++.+....+|+.++-....
T Consensus 113 ~~~~fs-------------~~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 113 FASGFS-------------NHFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred HHHHHH-------------HHHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 888776 557777777777777776 556777888999999999999999999999999998888777
Q ss_pred HHHhhcc-cc-hhhHHHHHHHHHHHHHHHhccCCCCCC
Q 017485 311 AMLCHFK-AG-IFFFFGGWVIVMTTFMHLFLPETKNVP 346 (371)
Q Consensus 311 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (371)
.+.+..+ |. .+...+++.++++++..++.+|.+++.
T Consensus 179 ~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 179 VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred eeccCccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence 7776665 43 445556666666777777777776543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-12 Score=108.69 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=122.1
Q ss_pred HHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
...+.............|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~ 84 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAG-LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence 33444455667777888999999999999888 88899999999999999999999999999999888888887766554
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
++.+...+...+.+.+.+... +....+..|.+|+++|++..++.+....++..+++.+.+.+.+..
T Consensus 85 -------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 150 (352)
T cd06174 85 -------------SSLWLLLVGRFLLGLGGGALY-PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150 (352)
T ss_pred -------------ccHHHHHHHHHHHHccccccc-HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555566665555443 444577799999999999999999999999999999999998877
Q ss_pred ccchhhHHHH
Q 017485 317 KAGIFFFFGG 326 (371)
Q Consensus 317 ~~~~~~~~~~ 326 (371)
++...+....
T Consensus 151 ~~~~~~~~~~ 160 (352)
T cd06174 151 GWRWLFLILA 160 (352)
T ss_pred hHHHHHHHHH
Confidence 6554444333
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-12 Score=110.66 Aligned_cols=155 Identities=15% Similarity=0.059 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 017485 153 MAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVI 232 (371)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 232 (371)
....+..+....+......+.+.+.+++|.+..+.+ .......++..++.++.|++.||+|||+.+..+..+..++.+.
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~ 94 (402)
T TIGR00897 16 LWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSA-SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA 94 (402)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 334444444444545555677778889999999999 8889999999999999999999999999999988888777554
Q ss_pred HHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHH-HHHHHHHHH
Q 017485 233 IGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFI-FFTAQTFLA 311 (371)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~ 311 (371)
...... ...+.+..++...+.+.+.+.. .+....+..+.+|+++|++++|+.+....++. .+++.+.+.
T Consensus 95 ~~~~~~---------~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 95 FIVFGL---------GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred HHHHhc---------cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 422110 0122333344444444443322 22233455688899999999999999988886 578888888
Q ss_pred HHhhccc
Q 017485 312 MLCHFKA 318 (371)
Q Consensus 312 ~~~~~~~ 318 (371)
+.+..++
T Consensus 165 l~~~~g~ 171 (402)
T TIGR00897 165 AIPAFGE 171 (402)
T ss_pred cccccch
Confidence 7776663
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=116.01 Aligned_cols=150 Identities=14% Similarity=0.006 Sum_probs=109.8
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHH
Q 017485 179 TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVL 258 (371)
Q Consensus 179 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (371)
+++.+..+.+ .....+.++.+++.++.|+++||+|||+.+..+.++..++.++...... ...+..++.
T Consensus 70 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~ 137 (465)
T TIGR00894 70 NFKWSGALQG-LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----------GGIALVVFC 137 (465)
T ss_pred CCCCCHHHhh-HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----------cCchHHHHH
Confidence 5678888888 8889999999999999999999999999999888777776655433210 123344445
Q ss_pred HHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhhHHHHHHHHHH-HHHH
Q 017485 259 VCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF-KAGIFFFFGGWVIVMT-TFMH 336 (371)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 336 (371)
.++.+.+.+.. .+....+++|.+|+++|++++++.+....++..+++.+.+.+.+.. +|...+.+.++..+.. ++.+
T Consensus 138 r~~~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 138 RVIQGLAQGSV-SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHHhcccc-hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 55555555543 4455677899999999999999999999999999999999998874 7765555544444333 3333
Q ss_pred HhccC
Q 017485 337 LFLPE 341 (371)
Q Consensus 337 ~~~~~ 341 (371)
.+.++
T Consensus 217 ~~~~~ 221 (465)
T TIGR00894 217 VFPAD 221 (465)
T ss_pred HHhcC
Confidence 44443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=115.64 Aligned_cols=180 Identities=11% Similarity=-0.064 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
+....+.++.....-..+....|.+.+++|.+..+.+ +..+.+.++..++.++.|+++||+|||+++..+.++..+..+
T Consensus 31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 109 (467)
T PRK09556 31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELG-MIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICML 109 (467)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHH
Confidence 3344444444444445566678888899999999999 888889999999999999999999999999888877777766
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLA 311 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
.++..... ..++.+..++...+.+.+.+... +....++.|.+|+++|+.++|+......+|..+++.+...
T Consensus 110 ~~~~~~~~--------~~~~~~~l~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 110 GFGASLGS--------GSVSLGLMIALWALSGFFQSTGG-PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred HHHHHHhc--------ccchHHHHHHHHHHHHHHHhccc-hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHH
Confidence 65543210 01334455555566666655544 4445678999999999999999999999999999888766
Q ss_pred HHhhc---ccchhhHH-HHHHHHHHHHHHHhccC
Q 017485 312 MLCHF---KAGIFFFF-GGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 312 ~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~ 341 (371)
+.+.. ++...+.+ +.+..+.+++.+++.++
T Consensus 181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 181 GANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred HHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 65543 24333333 33333344444444443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-12 Score=109.70 Aligned_cols=140 Identities=12% Similarity=-0.035 Sum_probs=113.0
Q ss_pred chhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 017485 165 GINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDH 244 (371)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (371)
....+...+|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+++..+..+..++.+..++.
T Consensus 24 ~~~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-------- 94 (393)
T PRK09705 24 LLTSVGPLLPQLRQASGMSFSVAA-LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-------- 94 (393)
T ss_pred hhhccchhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--------
Confidence 345677788999999999999999 88899999999999999999999999999999999999998888775
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccch
Q 017485 245 GGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF-KAGI 320 (371)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 320 (371)
++.+..++...+.+.+.+.... ....++.+.+| ++|+.++++.......|..+++.+.+.+.++. +|..
T Consensus 95 -----~~~~~ll~~r~l~Gig~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 95 -----PQSALLLSSALLGGVGIGIIQA-VMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred -----cchHHHHHHHHHHHhHHHHHhh-hhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3344555566666666654433 33456678877 78999999999988999999999988887765 4543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-11 Score=104.48 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=128.9
Q ss_pred hhhHhhHHHHHHHhCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 017485 167 NIIGLYAPVLLRTLKLSESA-SLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHG 245 (371)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (371)
....+..|.+.+++|++..+ .+ .+......+..+..+.+|+++||+|.|+++.++.+...+...+.++.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G-~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--------- 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTN-EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--------- 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---------
Confidence 34556678878899999999 77 89999999999999999999999999999999999888888887775
Q ss_pred CCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch---hh
Q 017485 246 GFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGI---FF 322 (371)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 322 (371)
.+.....+.-++++.+-+..+ ....++...+|+++|+++.|+.+....+|.++++++.+. ....+|.. ..
T Consensus 113 ----~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln 185 (511)
T TIGR00806 113 ----TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLN 185 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHH
Confidence 446667777777887777666 445777899999999999999999999999999999998 44556543 33
Q ss_pred HHHHHHHHHHHHHHHhccCCCC
Q 017485 323 FFGGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
.+......++++..+++|..++
T Consensus 186 ~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 186 IISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCCch
Confidence 3444455566677778885443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=110.35 Aligned_cols=182 Identities=18% Similarity=0.082 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchh-H---HHH-HHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESA-S---LLL-SAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQ 225 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~---~~~-~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 225 (371)
.+....+..+....-+..+.+..|.+-++++.+... . ..+ ......++..+|.++.|+++||+|||+++..+.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344455555655555666666777776776533321 1 101 23556678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCchhh-----HHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHH
Q 017485 226 MFVSQVIIGSIMAAELGDHGGFSEGY-----AYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300 (371)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 300 (371)
+.++.++.++.. +... ....++..++.+.+.+..+ +....+++|.+|+++|+...++......+
T Consensus 97 ~~i~~~~~a~~~----------~~~~~g~~a~~~l~~~R~l~G~g~g~~~-~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~ 165 (490)
T PRK10642 97 MSISTFCIGLIP----------SYATIGIWAPILLLLCKMAQGFSVGGEY-TGASIFVAEYSPDRKRGFMGSWLDFGSIA 165 (490)
T ss_pred HHHHHHHHHhcc----------cHHHHHHHHHHHHHHHHHHHHhHhHhhH-HHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 999888877651 0000 0124445555555555443 44457789999999999999998877777
Q ss_pred HHHHHHHHHHHHH--------hhcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 301 FIFFTAQTFLAML--------CHFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 301 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
|..+++.+...+. ..++|...+.+.++..+.+++.....||+.
T Consensus 166 G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp 216 (490)
T PRK10642 166 GFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETP 216 (490)
T ss_pred HHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 7777765544332 245777666665554444444445567753
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-11 Score=105.00 Aligned_cols=152 Identities=9% Similarity=0.040 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMF 227 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 227 (371)
++.++...+.+...+...+.+....+.+.+ +++++..+.+ +..+...+...+..+..|++.||+|.|+++.++.++..
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g-~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLF-LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 456666666666666666666666666665 7999999999 88888888888998899999999999999999888887
Q ss_pred HHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHH
Q 017485 228 VSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
+..+..++... ...++.+..++...+.+.+ +..+ +.....+++.+|+++||++.|+....+++|..+++.
T Consensus 112 i~~~~~~~a~~--------~~~~s~~~lli~r~l~Gig-g~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 112 IPCVWLGIAVQ--------NPNTPFGIFIVIALLCGFA-GANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHHHc--------ccCCCHHHHHHHHHHHHHH-HHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 77766655310 0012344445555555544 3333 334466789999999999999997777777766655
Q ss_pred HHHH
Q 017485 308 TFLA 311 (371)
Q Consensus 308 ~~~~ 311 (371)
+.+.
T Consensus 182 l~p~ 185 (462)
T PRK15034 182 VAPL 185 (462)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=109.26 Aligned_cols=162 Identities=15% Similarity=0.074 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCchHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK-LGRKILFLVGGIQMFVS 229 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~ 229 (371)
++......++...+++.+..+++.++ +++|.+..+.. ..............+++|+++|| +|||+.+..+.++..++
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~-~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig 101 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI-TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG 101 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 44455555556677788888888888 77999988877 55555554555556789999999 59999999998888887
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhh--hhhhhHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEI--RSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~ 307 (371)
...+.... +......+...+.+.+.+.. .+....+..|.+|++. |..+.++.+...++|+.++|.
T Consensus 102 ~~l~~~~~------------~~~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 102 YALVAWSG------------HDAGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred HHHHHHhc------------ccHHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 66655431 11222333334444444433 3444466789988643 456788889999999999999
Q ss_pred HHHHHHhhcccchhhHHHHH
Q 017485 308 TFLAMLCHFKAGIFFFFGGW 327 (371)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~ 327 (371)
+.+++.+..+|...+...++
T Consensus 169 i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 169 ATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred HHHHHHHhhCHHHHHHHHHH
Confidence 99999998887655555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-11 Score=106.46 Aligned_cols=147 Identities=14% Similarity=0.038 Sum_probs=111.1
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
+.+.++.............|.+.+++|.+..+.+ +..+...++.+++++..|++.||+|||+.+..+..+..++...+.
T Consensus 8 ~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g-~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~ 86 (410)
T TIGR00885 8 ITSLFALWGFANDITNPMVPQFQQAFTLTAFQAA-LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW 86 (410)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 3344444444445556778888899999999999 899999999999999999999999999999999998888876654
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAML 313 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (371)
... ..++.+..+...++.+.+.+....+. ..+..+..|+++|++..++.+....+|..++|.+.+.+.
T Consensus 87 ~~~----------~~~~~~~~l~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 87 PAA----------EIMNYTLFLVGLFILTAGLGFLETAA-NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHH----------hhccHHHHHHHHHHHHhhHHHHHhhh-hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 331 01234445555556666655444333 345577889999999999999999999999999888774
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=108.72 Aligned_cols=166 Identities=15% Similarity=0.095 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHH-----HHHHHHHHHHHHHHHHhhhCchHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVV-----TGGIGTVLTIISMILVDKLGRKILFLVGG 223 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 223 (371)
++......+..+........+....|.+.++++.+..+.+.+.... ..+...++.++.|+++||+|||+.+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 93 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence 3346666777777777778888999999999988776543132211 12333568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCchhh-----HHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHH
Q 017485 224 IQMFVSQVIIGSIMAAELGDHGGFSEGY-----AYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVC 298 (371)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 298 (371)
.+..++.+.+++.. +... ....++..++.+.+.+... +....+++|.+|+++|+.++++.....
T Consensus 94 ~~~~~~~~l~~~~~----------~~~~~~~~~~~~l~~~R~l~G~~~g~~~-~~~~~~~~e~~p~~~rg~~~~~~~~~~ 162 (434)
T PRK15075 94 SIMASGTLLIAFVP----------GYATIGLAAPLLVLLGRLLQGFSAGVEL-GGVSVYLAEIATPGRKGFYTSWQSASQ 162 (434)
T ss_pred HHHHHHHHHHHhCC----------cHHHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHhhCCcccchHHHHHHHHHH
Confidence 88888877766541 0000 1123444455555554433 333467899999999999999988888
Q ss_pred HHHHHHHHHHHHHHH--------hhcccchhhHHH
Q 017485 299 LVFIFFTAQTFLAML--------CHFKAGIFFFFG 325 (371)
Q Consensus 299 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 325 (371)
+++..+++.+.+.+. +..+|...+.+.
T Consensus 163 ~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 163 QVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG 197 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence 887777776655542 345666555543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=107.28 Aligned_cols=186 Identities=12% Similarity=0.012 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhC---CCchhHH--HHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLK---LSESASL--LLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQM 226 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 226 (371)
+....+..+........+....|.+.++++ .+..+.. ........++..+++++.|+++||+|||+.+..+....
T Consensus 24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 103 (432)
T PRK10406 24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMM 103 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 333344455555566667777787777774 3333221 12334455666699999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
.++.+..++..... ..........++...+.+.+.+.. .+....++.|.+|+++|+...++.+.....|..+++
T Consensus 104 ~~~~~~~~~~~~~~-----~~~~~~~~~l~~~R~l~G~g~g~~-~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 104 CFGSLVIACLPGYE-----TIGTWAPALLLLARLFQGLSVGGE-YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHhhcCCch-----hHHHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 88887766541000 000011223445555556555533 345567889999999999998887777667766666
Q ss_pred HHHHHHH--------hhcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 307 QTFLAML--------CHFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 307 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.+...+. ..++|+..+.+.++..+.........||++
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~ 222 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETS 222 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 5544332 245677666665555444443334455543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=105.86 Aligned_cols=171 Identities=14% Similarity=0.082 Sum_probs=109.3
Q ss_pred HHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHH-HHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGG-IQMFVSQVIIGSI 236 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~-~~~~~~~~~~~~~ 236 (371)
.+....+.......+|.++ +++|.+..+.+ +......+...+..++.|+++||+|||+.++... ....++.+.....
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIG-LFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 3334445555666677766 67899999988 8888888889999999999999999988765543 3333333333332
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAG--QSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
++.+..++...+.+.+.+ ...|....+..|..|++.|+.+ .+.......++..+++.+.+.+.+
T Consensus 85 -------------~~~~~l~~~~~~~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 150 (375)
T TIGR00899 85 -------------RNYFLLLVLGVLLSSFAS-TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL 150 (375)
T ss_pred -------------chHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence 223333333333333322 2344545566677776666644 567777788999999999999988
Q ss_pred hcccchhhHHHHHHH-HHHHHHHHhccCCCC
Q 017485 315 HFKAGIFFFFGGWVI-VMTTFMHLFLPETKN 344 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 344 (371)
..+|...+...+++. +..++..++.||.++
T Consensus 151 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 151 GFGFTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 888765555544443 344444455776543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-11 Score=104.90 Aligned_cols=187 Identities=15% Similarity=0.134 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhhchhhhHhhHHHHH-HHh--CCCchhHHHHH----HHHHHHHHHHHHHHHHHHHhhhCchHHHHHH
Q 017485 150 QLVMAILIPFFQQVTGINIIGLYAPVLL-RTL--KLSESASLLLS----AVVTGGIGTVLTIISMILVDKLGRKILFLVG 222 (371)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--g~~~~~~~~~~----~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 222 (371)
+......+..+........+....|.+. +++ +.++.... .. .....++..+++++.|+++||+|||+.+..+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~ 100 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGT-LAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 3444455555555555555555666554 444 45554322 21 1234456778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHH
Q 017485 223 GIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFI 302 (371)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 302 (371)
..+..++.++.++...... .........++...+.+.+.+..+. ....++.|.+|+++|+...+..+....+|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~ 174 (438)
T PRK09952 101 VWMMGIATALIGLLPSFST-----IGWWAPVLLVTLRAIQGFAVGGEWG-GAALLAVESAPKNKKAFYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHHHHHHHHhhhcccHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 8888888777766410000 0000011244445555655554433 335777999999999999888888888888
Q ss_pred HHHHHHHHHHHh--------hcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 303 FFTAQTFLAMLC--------HFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 303 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.+++.+...+.. ..+|+..+...++..+.........||++
T Consensus 175 ~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~ 223 (438)
T PRK09952 175 LLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESA 223 (438)
T ss_pred HHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 887766655442 35676666655544433333333345543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=105.95 Aligned_cols=174 Identities=13% Similarity=0.109 Sum_probs=118.7
Q ss_pred HHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CchH-HHHHHHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL-----GRKI-LFLVGGIQMFVS 229 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~ 229 (371)
...++.+...+.....-+|.++++.|++.++.+ +....... .+..++.|+++||+ |||| .+..+.+...++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 344556666777778889999999999999999 55554443 58889999999999 7776 566666666666
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
...+.... +..+.+......++...+.+ ...+...+++.|.+|+++|+.+.++......++..+++.+.
T Consensus 82 ~~~l~~~~----------~~~~~~~l~~~~~~~~~~~~-~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~ 150 (402)
T PRK11902 82 IAAMAFCP----------PHAALWPLAGLAVLVAFLSA-SQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA 150 (402)
T ss_pred HHHHHhcC----------ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 55554431 11223333333333333333 34455567789999999999999999988889999999988
Q ss_pred HHHHhhc-ccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 310 LAMLCHF-KAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 310 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
+.+.+.. +|...+.+.++..+...+..+..||++
T Consensus 151 ~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 151 LWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 8888753 676655554444444444455666654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-11 Score=104.18 Aligned_cols=174 Identities=13% Similarity=-0.040 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
.++...+..+....+......+.|.++++ +|.+..+.+ +..+...++..++.++.|+++||+|||+.+.++..+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g-~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTG-IIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 34444555555555556677788888755 999999999 8999999999999999999999999999987765554443
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHH-HHHHHHHHHHhhhccccc---cceeeeecccCchhhhhhhhHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAY-LILVLVCVYSAGFSYSWG---PLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFT 305 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 305 (371)
.......... .... .......+.....+.... +....+. |.. .+.++..+|.......+|..++
T Consensus 90 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~ 157 (420)
T PRK09528 90 FGPFFIYVFA----------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALC 157 (420)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHH
Confidence 3222111000 0000 011111111111111111 1111221 111 2345667788888899999999
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHHHHh
Q 017485 306 AQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLF 338 (371)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (371)
|.+.+.+.+. ++...+...++..+...+..++
T Consensus 158 ~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 158 AFIAGILFNI-NPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred HHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhc
Confidence 9999988764 4433333333333333333333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-12 Score=100.97 Aligned_cols=145 Identities=16% Similarity=0.062 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHh
Q 017485 185 SASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSA 264 (371)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (371)
.-++ ++.+.+.+.+++.++.+|.++||+|||+++.++.+...+...+.+.. . +...++...+.++
T Consensus 68 ~yaG-flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------------~-~F~afv~aR~l~G 132 (451)
T KOG2615|consen 68 FYAG-FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------------R-NFAAFVLARFLGG 132 (451)
T ss_pred hhhh-hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------------H-HHHHHHHHHHhhh
Confidence 3445 88899999999999999999999999999999988888876666653 2 3334444233333
Q ss_pred hhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh---hcccchhhH---HHHHHHHH-HHHHHH
Q 017485 265 GFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC---HFKAGIFFF---FGGWVIVM-TTFMHL 337 (371)
Q Consensus 265 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~-~~~~~~ 337 (371)
.+. +...+..++++|++++++|+.+++..+....+|-.+||.+.+++.. ..+...+.. +..+.... .....+
T Consensus 133 i~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~ 211 (451)
T KOG2615|consen 133 IFK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPW 211 (451)
T ss_pred hcc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 333 3334556888999999999999999999999999999999999877 334222222 22222222 345567
Q ss_pred hccCCCCC
Q 017485 338 FLPETKNV 345 (371)
Q Consensus 338 ~~~~~~~~ 345 (371)
++|||-+.
T Consensus 212 ~lpETL~~ 219 (451)
T KOG2615|consen 212 FLPETLPL 219 (451)
T ss_pred hCCccccc
Confidence 78988443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-12 Score=112.25 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=113.0
Q ss_pred hhHHHHHHHhCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 017485 171 LYAPVLLRTLKLS---ESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGF 247 (371)
Q Consensus 171 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (371)
.+.|.+.++++.+ ..+.+ +..+...++.+++.++.|+++||+|||+.+.++.++..++.+...+.
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~-~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~----------- 177 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVD-LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS----------- 177 (505)
T ss_pred cccccEEEEecceechHHHHH-HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-----------
Confidence 3556667788887 67777 88999999999999999999999999999999888887777666553
Q ss_pred chhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHH
Q 017485 248 SEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGW 327 (371)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (371)
.+.+..++...+.+++.+.. .+....++.|.+|+++|+.+.++......+|..+++.+...+.+ |...+...++
T Consensus 178 --~~~~~~~~~r~l~G~~~~~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i 251 (505)
T TIGR00898 178 --PNYTVFLVFRLLVGMGIGGI-WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSL 251 (505)
T ss_pred --ccHHHHHHHHHHHHhhccch-HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHH
Confidence 33445555555555555433 45566788999999999999999888888888888877654433 4444444444
Q ss_pred HHHHHHHHHHhccCCC
Q 017485 328 VIVMTTFMHLFLPETK 343 (371)
Q Consensus 328 ~~~~~~~~~~~~~~~~ 343 (371)
..+...+..+++||+.
T Consensus 252 ~~~~~~~~~~~~~esp 267 (505)
T TIGR00898 252 PTFLFFLLSWFVPESP 267 (505)
T ss_pred HHHHHHHHHHhcCCCh
Confidence 4444455557778753
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-11 Score=98.23 Aligned_cols=177 Identities=11% Similarity=0.048 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 150 QLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
+.++.........+...+.+....+.+-+++++|+.+.. ++.....+.+.+..+..|.+.||+|.|+....+.++..+-
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP 92 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP 92 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence 344445555554444555556666666689999999999 8999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
.+..++... ..+.+..++...+.+.+.+. ......++++.||++++|.+.|+.. .+++|..+...+.
T Consensus 93 ~~~~~~a~~----------~~~~~~ll~~gll~G~~Gas--Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~ 159 (417)
T COG2223 93 CLGLAFAVT----------YPSTWQLLVIGLLLGLAGAS--FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA 159 (417)
T ss_pred HHHHHHHcc----------CCchHHHHHHHHHHhcccce--ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHH
Confidence 777776631 12223444444444433332 2344567789999999999999988 9999999999988
Q ss_pred HHHHhhcc---cc-hhhHHHHHHHHHHHHHHHhcc
Q 017485 310 LAMLCHFK---AG-IFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 310 ~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 340 (371)
+.+....+ |. ...++...+++..+..++...
T Consensus 160 P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 160 PLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888777 43 334444444444555555544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=103.03 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=110.2
Q ss_pred hchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 017485 164 TGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGD 243 (371)
Q Consensus 164 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (371)
...+.+..+.|.+.+++|++..+.+ ....... ......++.|++.||+|+|+++.++.++..++.+..++....
T Consensus 41 g~~y~fsv~s~~L~~~lgls~~~l~-~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~---- 114 (591)
T PTZ00207 41 SFMYAFNLISGAMQARYNLTQRDLS-TITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE---- 114 (591)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 4456778889999899999998888 4444433 333456678999999999999999999999998877764210
Q ss_pred CCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhH
Q 017485 244 HGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFF 323 (371)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (371)
....+.+...+...+.+.+.+...... ...+.+.+| ++||.+.|+......+|+.+.+.+...+........+++
T Consensus 115 ---~i~~s~~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~ 189 (591)
T PTZ00207 115 ---VIEGSVVRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFF 189 (591)
T ss_pred ---cccCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 001234444555555555544333222 344577886 789999999999999999876666555544322334455
Q ss_pred HHHHHHHHHHHHHHhccC
Q 017485 324 FGGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ 341 (371)
.+.+..+.+++...+++.
T Consensus 190 l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 190 LMSFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHHHHhheeC
Confidence 555555555555555543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-11 Score=104.99 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 150 QLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
+.+..+++.......+......-.+.+..+..-|+...+ +......+..++.++++|.++||++||++++.+-++..+.
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~va-lv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVA-LVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALV 88 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 334444455555555656666667777777777777777 8888888899999999999999999999999988877766
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
...+...... +..+.+..+++.++.+.+.+ ...|...+++.|++|+++...++++.+...++...++|.+.
T Consensus 89 ~~~L~~l~~~--------~~~~~~~Ll~~~fl~g~~~a-~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalg 159 (524)
T PF05977_consen 89 ALLLAVLAFF--------GLLSPWLLLILTFLLGIGSA-FFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALG 159 (524)
T ss_pred HHHHHHHHHh--------CcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHH
Confidence 6555544321 11334555555555555544 44566678889999999999999999999999999999999
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHhcc
Q 017485 310 LAMLCHFKAGIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
|.+....|....+.+-+++.+..+......+
T Consensus 160 G~Lva~~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 160 GILVAFFGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999888765555555555554444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=111.33 Aligned_cols=159 Identities=16% Similarity=-0.021 Sum_probs=114.5
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
+.+..+.+..........++.+-+++++++.+.+ ++.+.+.++..++.++.+++.||.+||+.+.++.++++++.++++
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh
Confidence 3334444443334455556777788999999998 889999999999999999999999999999999999999888776
Q ss_pred HHHHhhh-CCC--------------------C------------C--Cch--h-hHHHHHHHHHHHHhhhccccccceee
Q 017485 235 SIMAAEL-GDH--------------------G------------G--FSE--G-YAYLILVLVCVYSAGFSYSWGPLAWL 276 (371)
Q Consensus 235 ~~~~~~~-~~~--------------------~------------~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (371)
+.-+..- ... . . ... . .....++..++.+.+.+. ..+....
T Consensus 117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~-~~~~~~~ 195 (633)
T TIGR00805 117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP-IFPLGIS 195 (633)
T ss_pred ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc-chhcCch
Confidence 5421100 000 0 0 000 1 122334455555555543 3456678
Q ss_pred eecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 277 VPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 277 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
++.|.+|++.|+...++.+....+|..+++.+.+.+.+.
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 889999999999999999999999999999998887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-09 Score=95.33 Aligned_cols=294 Identities=12% Similarity=0.022 Sum_probs=144.5
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCC--cccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHHhh
Q 017485 8 LLGIGIGFANQSVPLYLSEMAPPK--HRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTVGA 85 (371)
Q Consensus 8 l~G~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~ 85 (371)
+.++|.|...+...++++|.+|++ +|....++...+.++|..++|.+.+++.+. .|||+.|.+.++..++..+.+
T Consensus 109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~---~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE---YSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh---hChHHHHHHHHHHHHHHHHHH
Confidence 444556666677788999999876 699999999999999999999999988764 469999998776444433333
Q ss_pred hcCCCChhhH-HhhCCChHHHHHHHHHHhCcc---c------hHHHHH-HHHHHhccc---cccc---chhhhhhhccch
Q 017485 86 LFMPETPNSI-IQRSNDPQKAKRMLQRVRGTA---D------VEAELN-DLIRASSIS---KTIN---HPFKKIIQRKYR 148 (371)
Q Consensus 86 ~~~~esp~~~-~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~-~~~~~~~~~---~~~~---~~~~~~~~~~~~ 148 (371)
++..+..... ..+.++.++ ++........- . ...... +.....-.. -... .-.+...++..|
T Consensus 186 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er 264 (493)
T PRK15462 186 LCGNRHFTHTRGVNKKVLRA-TNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQR 264 (493)
T ss_pred HHhhhhhccCCCCCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3221110000 000010100 00000000000 0 000000 000000000 0000 000000011112
Q ss_pred hHH--HHHHHHHHHHHhhchhhhHhhHHHHHHH------hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCc--hH-
Q 017485 149 PQL--VMAILIPFFQQVTGINIIGLYAPVLLRT------LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGR--KI- 217 (371)
Q Consensus 149 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~- 217 (371)
+|. .+.+.+.....+..+......+..+.++ .|++.+ .. +..+...+..++.+++.+++=.|..| |.
T Consensus 265 ~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip-~~-~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~ 342 (493)
T PRK15462 265 KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVP-TA-MFQSINAFAVMLCGVFLAWVVKESVAGNRTV 342 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeC-HH-HHHhHhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 222 2222222222233333333333333332 233322 22 45566666677777766666555532 21
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHH
Q 017485 218 ----LFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSI 293 (371)
Q Consensus 218 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 293 (371)
-+.++.++++++.+.+...... .+.+ ...+.++.+....+.. .......|+..+.++++.|++.|+..+|+
T Consensus 343 s~~~Kfa~g~~~~g~~f~~l~~~~~~--~~~~--~~~s~~wl~~~~~~~t-~gEl~~sPvgls~~~~laP~~~~g~~mg~ 417 (493)
T PRK15462 343 RIWGKFALGLGLMSAGFCILTLSARW--SAMY--GHSSLPLMVLGLAVMG-FAELFIDPVAMSQITRIEIPGVTGVLTGI 417 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhh--cCCC--CCcCHHHHHHHHHHHH-HHHHHHChHHHHHHHHhChHHHHHHHHHH
Confidence 1456666666666555443211 1111 1123333444444443 33456678888888999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHH
Q 017485 294 TVAVC-LVFIFFTAQTFLAM 312 (371)
Q Consensus 294 ~~~~~-~~~~~~~~~~~~~~ 312 (371)
..... .+++.++..+.+..
T Consensus 418 w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 418 YMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 86643 56666666655544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=113.19 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH--HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhc
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV--IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFS 267 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (371)
+......+..++.++++|+++||+|||+++........+... .+.... .+.+..+++.++.+.+.+
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~------------~s~~~l~~~~~l~gi~~a 123 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL------------NSVPLLFAALFLMGIHSA 123 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHH
Confidence 667778888999999999999999999976432222222111 111111 335555555566655554
Q ss_pred cccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 268 YSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 268 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
...|...+++.|.+|++.|+.++|+.++...++..++|.+.+.+.+..++...++..++..+.+++..+++++++
T Consensus 124 -~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 124 -LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred -hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 345666788899999999999999999999999999999999999888876666555555555555556666543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=99.94 Aligned_cols=135 Identities=15% Similarity=0.074 Sum_probs=101.1
Q ss_pred chhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 017485 165 GINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDH 244 (371)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (371)
.+......+|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++.+.. ..
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-------- 84 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVAG-LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-------- 84 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--------
Confidence 345566788999999999999999 89999999999999999999999999999988877766555443 21
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 245 GGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
++.+..++...+.+.+.+... +....++.|.+| ++|+.+.++.+....++..+++.+.+.+.+..
T Consensus 85 -----~~~~~l~~~~~~~g~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 85 -----PGTALLFAGTALIGVGIAIIN-VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHh-ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223344444444444444322 223345567776 68999999999999999999999888887664
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-10 Score=98.63 Aligned_cols=148 Identities=13% Similarity=0.012 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 017485 154 AILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVII 233 (371)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 233 (371)
.+.+.++.............|.+.++++.+..+.+ +......++..++.++.|++.||+|||+++..+..+..++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~g-l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~ 108 (438)
T PRK10133 30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 33444444445556777788999889999999999 88999999999999999999999999999999999988887665
Q ss_pred HHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017485 234 GSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAML 313 (371)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (371)
.... ..++.+..++..++.+.+.+...... ..++.|..|++.|...+++.+....+|..+++.+.+.+.
T Consensus 109 ~~~~----------~a~~~~~ll~~r~l~G~g~g~~~~~~-~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 109 WPAA----------EIMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHH----------hcCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 01334555566666666666544433 345567767777667789999999999999988876544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=102.07 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=117.3
Q ss_pred HHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CchHH-HHHHHHHHH
Q 017485 154 AILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL-----GRKIL-FLVGGIQMF 227 (371)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~ 227 (371)
.+.+..+.+..........+|.++++.|.+..+.+ ... ..... .++.++.+.++||+ |||+. +..+.+...
T Consensus 16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig-~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIG-FFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH-HHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 34444555556666777788999999999988888 432 22222 26889999999999 99886 555555555
Q ss_pred HHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHH
Q 017485 228 VSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
++...++... +..+.+.......+.+.+.+ ...+...++..|.+|+++|+.+.++......+|..+++.
T Consensus 93 ~~~~~~a~~~----------~~~~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~ 161 (491)
T PRK11010 93 VAIAAMGFLE----------PGTQLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG 161 (491)
T ss_pred HHHHHHHHcC----------CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555554431 11223334434444444443 334445577889999999999999999999999999999
Q ss_pred HHHHHHh-hcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 308 TFLAMLC-HFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 308 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
+...+.+ ..+|...+...++..+...+..++.||++
T Consensus 162 l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 162 LALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9888888 45777666555555444455545567754
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-11 Score=86.45 Aligned_cols=134 Identities=15% Similarity=0.156 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccc
Q 017485 194 VTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPL 273 (371)
Q Consensus 194 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
...++.+++.++.+++.||+|||+.+..+.....++.+..... .+.+.......+.+.+.+.. .+.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~ 71 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAFA-LVA 71 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHH-HHh
Confidence 4567788899999999999999999988877777666555442 22334444445555444432 344
Q ss_pred eeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhH-HHHHHHHHHHHHHHhccC
Q 017485 274 AWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFF-FGGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 274 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 341 (371)
...+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++...+. ......+..+...+..||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 55677899999999999999999999999999999999988777644443 333334444444444444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=99.56 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=105.4
Q ss_pred hhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CchHHH-HHHHHHHHHHHHHHHHHHHhhh
Q 017485 168 IIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL-----GRKILF-LVGGIQMFVSQVIIGSIMAAEL 241 (371)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
.+....|.+.++.|.+..+.+ +.... .+...+ .++.|.++||+ ||||.+ +.+.+...+....+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g-~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIG-FFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHH-HHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 445567888999999999888 55433 333444 88999999998 888875 444555544444443321
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc----
Q 017485 242 GDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK---- 317 (371)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 317 (371)
+....+.......+...+.+ ...+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 79 ------~~~~l~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~ 151 (356)
T TIGR00901 79 ------PSTDLPLLAGLAFLIAFFSA-TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG 151 (356)
T ss_pred ------cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 11222223333333333332 2334445677899999999999999999999999999999988887776
Q ss_pred ----cchhhHHHHHHHHHHHHHHH-hccCCC
Q 017485 318 ----AGIFFFFGGWVIVMTTFMHL-FLPETK 343 (371)
Q Consensus 318 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~ 343 (371)
|...+.+.++..+...+..+ ..||++
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 76666665555555444434 356643
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-10 Score=99.28 Aligned_cols=171 Identities=13% Similarity=-0.004 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
.++.+....++...+...+..++|.++ +++|.+..+.+ .......+...++.++.|+++||+|||+.+..+.....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTG-IVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 355555556666666667777888887 45899999999 8999999999999999999999999999998766655444
Q ss_pred HHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
............ ..........+...+.+.+.+.. .+....+..|.. +.++...|.....+.+|..++|.+.
T Consensus 82 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~ 153 (396)
T TIGR00882 82 FAPFFIYVFGPL-----LQSNILVGAIVGGLYLGFVFSAG-AGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIA 153 (396)
T ss_pred HHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHH
Confidence 332221110000 00001111122223333333322 223223333432 2334566777788889999999998
Q ss_pred HHHHhhcccchhhHHHHHHHHH
Q 017485 310 LAMLCHFKAGIFFFFGGWVIVM 331 (371)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~ 331 (371)
+.+.+ .++...+...+...+.
T Consensus 154 g~l~~-~~~~~~f~~~~~~~~~ 174 (396)
T TIGR00882 154 GILFS-IDPQIVFWLGSGFALI 174 (396)
T ss_pred hhhhc-cCchHHHHHHHHHHHH
Confidence 87755 3555444444433333
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-11 Score=101.79 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccc
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYS 269 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (371)
...+...+++++|+++.++++||+|||..+.+..++..++.+....... .+.....++..++.+...+..
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~----------~~~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS----------APSFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHhHHH
Confidence 5667888999999999999999999999999888888877777666532 144556666666666666655
Q ss_pred cccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHhhcc-cchhhHHHHHHHHHHHHHHHhccCCCC
Q 017485 270 WGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF-LAMLCHFK-AGIFFFFGGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 270 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
.. ....|..|..|.+.||....+......+|..++..+. ..+.++.. |.....+..+..+..++...+.||+.+
T Consensus 134 ~~-~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 134 TG-LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HH-HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 44 3347889999999999998888888888888874443 34443333 556666666666777778888999743
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-10 Score=97.08 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=105.9
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHH-HHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMF-VSQVII 233 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~ 233 (371)
+.+.++....++.....++|.+++++|.+..+.+ .......+...++.++.+.++||+||+........... +....+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig-~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~ 87 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIG-LLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAF 87 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556677788999999999999999 88888899999999999999999998654322221111 111111
Q ss_pred HHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017485 234 GSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAML 313 (371)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (371)
... .++.+..++...+.+.+.+. ..|....+..| +.++|+...|.....+.+|..++|.+.+.+.
T Consensus 88 ~~~------------~~~~~~l~~~~~l~~~~~~~-~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~ 152 (382)
T TIGR00902 88 SAG------------AHNAWLLFIAIGLFALFFSA-GMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI 152 (382)
T ss_pred HHh------------hhhHHHHHHHHHHHHHHHcc-chhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 111 02344444444445545443 34555555443 3577899999999999999999999999999
Q ss_pred hhcccchhhHHHHHH
Q 017485 314 CHFKAGIFFFFGGWV 328 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~ 328 (371)
++.+|...+......
T Consensus 153 ~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 153 GMFDEQNILAILTAG 167 (382)
T ss_pred HHcChhHHHHHHHHH
Confidence 988876554444333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.4e-10 Score=95.87 Aligned_cols=173 Identities=14% Similarity=0.058 Sum_probs=101.7
Q ss_pred HHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhCchHHHHH-HHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVT-GGIGTVLTIISMILVDKLGRKILFLV-GGIQMFVSQV 231 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~ 231 (371)
+.+..+....+...+...+|.++ +++|.+..+.+ +..... ..+.+.+.+.+++ .||+|||+.++. +.+...+...
T Consensus 20 ~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 20 FLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVG-FFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 33334444455555666677765 67899999988 655444 4455566666666 999999987544 4343334333
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhh--hhhHHHHHHHHHHHHHHHHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRS--AGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~~~~~~~~~~~~~~~~~~~ 309 (371)
.+... ++.+..++...+.+.... ...|....+..|..+++.|. ...++.+....++..++|.+.
T Consensus 98 ~~~~~-------------~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~ 163 (393)
T PRK15011 98 LFAWN-------------RNYFVLLFVGVFLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA 163 (393)
T ss_pred HHHHh-------------hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33332 222222222222222222 33455555556655554443 334677778889999999999
Q ss_pred HHHHhhcccchhhHHHHHH-HHHHHHHHHhccCCC
Q 017485 310 LAMLCHFKAGIFFFFGGWV-IVMTTFMHLFLPETK 343 (371)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 343 (371)
+.+.++.+|...+...+.. .+.++....+.||.+
T Consensus 164 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 164 YALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 9998888887665554443 344444455567654
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.2e-10 Score=98.47 Aligned_cols=139 Identities=22% Similarity=0.149 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccc
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYS 269 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (371)
+..+...++..++++++|+++|++|||+.++++.+...++.++.+.. .+.....+..++.+.+.+..
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------------~~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------------PSWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhccchhhh
Confidence 88899999999999999999999999999999999999999988886 45677777788888777765
Q ss_pred cccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 270 WGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF--KAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 270 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.. +...|.+|+.|++.||...+..+....+|..++ .+.+....+. +|+..+....+..+...+..++.||+.
T Consensus 160 ~~-~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 160 SV-LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred hh-cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 54 445888999999999999999888888777666 5556655543 677666666666666666677888763
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.2e-10 Score=109.37 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=94.5
Q ss_pred HHHHHHHhCCCchh--HHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchh
Q 017485 173 APVLLRTLKLSESA--SLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEG 250 (371)
Q Consensus 173 ~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (371)
.+.+..+++.+... .+ +..+...++.+++++++|+++||+|||++++.+.++..+..++...... ..
T Consensus 33 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~----------~~ 101 (1146)
T PRK08633 33 QNTLIKAYDGSEQVILTA-IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY----------LG 101 (1146)
T ss_pred HHHHHHHcCcccHHHHHH-HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH----------Hc
Confidence 34444555554333 34 6777888889999999999999999999998887665555444433211 02
Q ss_pred hHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 251 YAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
+.+..++..++.+.+.+. ..+...+++.|.+|++.|+.++|+......+|..+++.+.+.+.+.
T Consensus 102 ~~~~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAI-YSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred cHHHHHHHHHHHHHHHHh-hchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555443 4455567889999999999999999999999999999999988775
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.7e-10 Score=94.79 Aligned_cols=168 Identities=10% Similarity=-0.018 Sum_probs=107.3
Q ss_pred HHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHH-HHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGI-QMFVSQVIIGSIM 237 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~~~~~~~~~~~~ 237 (371)
++..+.+...+..++|.++++.|.+..+.+ .......+...++.++.|.++||+|||....-... ...+....+..
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG-~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-- 89 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIG-LLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF-- 89 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHH-HHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH--
Confidence 333444556677788899999999999999 88889999999999999999999999532211111 11111111111
Q ss_pred HhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 238 AAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
..++.+..++...+.+.+.+. ..|...++..+. .++|+.+.+.....+.++..++|.+.+.+.++.+
T Consensus 90 ----------~~~~~~~l~i~~~l~g~~~~~-~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g 156 (382)
T PRK11128 90 ----------GAHSFWLLFVAIGLFNLFFSP-LVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG 156 (382)
T ss_pred ----------hcccHHHHHHHHHHHHHHHcc-cccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112344444444444444433 334444454443 4567888899999999999999999999999888
Q ss_pred cchhhHHHHHHHHHHHHHHHhccCC
Q 017485 318 AGIFFFFGGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (371)
|...+...++..+...+..+..||.
T Consensus 157 ~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 157 EQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHccCCC
Confidence 7765555444444333333444543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=101.95 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=96.2
Q ss_pred HhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCch
Q 017485 170 GLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSE 249 (371)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (371)
...++.+.+++|-++... +......++..+..++.|+++|.+|||..++.+.++..++.++.+..
T Consensus 64 a~~l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 344567778888765444 45566788899999999999999999999999999999998887764
Q ss_pred hhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 017485 250 GYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFF 322 (371)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (371)
++....+....+.+.+.+.. .+....++|+.|.+.|..+.++...........++.+...+..+.+|+..+
T Consensus 129 ~~~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~ 199 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIF 199 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHH
Confidence 44555566666666654332 334455799999999988877666554444456666665555555554333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=101.76 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=112.2
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHH
Q 017485 178 RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILV 257 (371)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (371)
+....+..... +..+...++.++|+++.|.++||+|||++++.+.++..++.+..++. .+.+...+
T Consensus 111 ~~~c~~~~~~~-~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~ 176 (521)
T KOG0255|consen 111 NLVCDSSTLVA-LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLI 176 (521)
T ss_pred ceeeCcHhHHH-HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHH
Confidence 33444555556 78899999999999999999999999999999999999988777665 45556666
Q ss_pred HHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 017485 258 LVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHL 337 (371)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (371)
..++.+++.+. .....+.+..|.++++.|+.+..+ ....+.++..++.+.+++.. +|........+..+..++.++
T Consensus 177 ~Rfl~G~~~~~-~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~ 252 (521)
T KOG0255|consen 177 FRFLSGFFGSG-PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWF 252 (521)
T ss_pred HHHHHHhhccc-hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHH
Confidence 66666666554 445667888999999999999999 88889999999999888877 455445554444444444455
Q ss_pred hccCCC
Q 017485 338 FLPETK 343 (371)
Q Consensus 338 ~~~~~~ 343 (371)
+.||++
T Consensus 253 l~~Es~ 258 (521)
T KOG0255|consen 253 LPPESP 258 (521)
T ss_pred ccCcCh
Confidence 565753
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=95.32 Aligned_cols=158 Identities=10% Similarity=0.028 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhCchHHHHHHH-HHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVD----KLGRKILFLVGG-IQM 226 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~~-~~~ 226 (371)
+....+....+ .++.....+.+.+++++|.+....+ .......+..++..++.|+++| |+|||+.++.+. ...
T Consensus 7 i~~~~~~~Giq-~~~~l~~~~l~~yl~~lg~~~~~~~-~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 7 LRVASVAAGVQ-FGWALQLSLLTPYVQELGIPHAWAS-IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 33333333333 3455566677778899999998888 8888899999999999999999 599999988754 344
Q ss_pred HHHHHHHHHHHHhhhCCCCCC-chhhH---HHHHHHHHHHHhhhccccccceeeeecccCchhhh--hhhhHHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGF-SEGYA---YLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIR--SAGQSITVAVCLV 300 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~ 300 (371)
.++..++.............. ..... +..++...+..++......|. .++++|..|+++| +.+.++.+....+
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 444344333211000000000 00011 222333333334444444444 4677999998865 5788888888999
Q ss_pred HHHHHHHHHHHH
Q 017485 301 FIFFTAQTFLAM 312 (371)
Q Consensus 301 ~~~~~~~~~~~~ 312 (371)
|+.+++.+.+..
T Consensus 164 G~ilg~~~g~~~ 175 (477)
T TIGR01301 164 GNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=86.42 Aligned_cols=171 Identities=14% Similarity=0.152 Sum_probs=116.6
Q ss_pred HHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 161 QQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
......|.+..|.|.+-+.+|++.++.. .+.....++..+| ++.|.+.|++|.+.++.++.+...++...+.....-
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~-~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~- 89 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLN-TLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG- 89 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHH-HHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 3445678899999999999999999999 7777888888765 788999999999999999999998888777655321
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGI 320 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
..+..+.|...+..++.+.+... ..........+.|| ++||++.|+.-....+++.+-..+...+.+......
T Consensus 90 -----~i~~~~~~~~~~~~~l~~~s~~~-~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~f 162 (250)
T PF06813_consen 90 -----RIPSLPVWLMCLFLFLGGNSSCW-FNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSF 162 (250)
T ss_pred -----ccCccchHHHHHHHHHHcccHHH-hhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHH
Confidence 11112233333333333332221 12222233347787 589999999999999999999888887776643444
Q ss_pred hhHHHHHHHHHHHHHHHhccC
Q 017485 321 FFFFGGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~ 341 (371)
....+....+.+++...+++.
T Consensus 163 ll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 163 LLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHHHHHHHHHhhheec
Confidence 444444444555555455543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=93.17 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceee
Q 017485 197 GIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWL 276 (371)
Q Consensus 197 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (371)
+...++.++.|+++||+|||+.+..+.++..++........... ..........++...+.+.+.+... +....
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~r~l~G~~~~~~~-~~~~~ 119 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYA-----TIGIWAPILLLLARLIQGFSLGGEW-GGAAL 119 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChh-----hhHHHHHHHHHHHHHHHHhhccccc-cccHH
Confidence 34456889999999999999999999888888776665531000 0000001123333444444444333 34456
Q ss_pred eecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh--------hcccchhhHHHHHHHHHHHHHHHhccCC
Q 017485 277 VPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC--------HFKAGIFFFFGGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 277 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (371)
++.|.+|+++|+...++.+....+|..+++.+...+.. ..+|...+...++..+.........+|+
T Consensus 120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 193 (394)
T TIGR00883 120 YLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEET 193 (394)
T ss_pred HhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77899999999999999998888998888877655432 3445555544444444444333444544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=95.33 Aligned_cols=149 Identities=14% Similarity=0.149 Sum_probs=117.2
Q ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHH
Q 017485 180 LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLV 259 (371)
Q Consensus 180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (371)
.+.+..+.+ ++.....+.+++.+++.|.+.||+|+|..++++...+..+.+++++. ++.+..++..
T Consensus 101 ~~~e~~~iG-~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------------~sy~~l~vAR 166 (464)
T KOG3764|consen 101 LDRENTQIG-LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------------NSYPMLFVAR 166 (464)
T ss_pred ccccccchh-HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------------chhHHHHHHH
Confidence 444556667 89999999999999999999999999999999999999998888875 4455667777
Q ss_pred HHHHhhhccccccceeeeecccCchhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH-HHHHH
Q 017485 260 CVYSAGFSYSWGPLAWLVPSEIFPLEI-RSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMT-TFMHL 337 (371)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 337 (371)
.+-+.+.+.... ...++++|.+|.+. |+.++|+.-.+..+|-.++|++.|.+++..|....+++.++..+.- .+-.+
T Consensus 167 ~LQgvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 167 SLQGVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL 245 (464)
T ss_pred HHhhhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh
Confidence 777777665544 44577799999875 6999999999999999999999999999999766666555554444 44444
Q ss_pred hccCCC
Q 017485 338 FLPETK 343 (371)
Q Consensus 338 ~~~~~~ 343 (371)
.++.++
T Consensus 246 vi~p~~ 251 (464)
T KOG3764|consen 246 VIEPTE 251 (464)
T ss_pred eeCccc
Confidence 444333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-09 Score=91.63 Aligned_cols=264 Identities=13% Similarity=0.121 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHHh-hhcCCCC
Q 017485 13 IGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTVG-ALFMPET 91 (371)
Q Consensus 13 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~es 91 (371)
.+.......++++|....++|....++....+..+..++|.+++...+.. |--.+|.+..+..++..+. ..++||+
T Consensus 126 ~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~---~~a~~f~ia~~~~~~~~~y~~~~l~Es 202 (463)
T KOG2816|consen 126 FSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL---GIALVFLIAAASGILSLLYMLLFLPES 202 (463)
T ss_pred hhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHhhccccc
Confidence 34567888999999999999999999999999999999999998887754 4778888888887777776 6778888
Q ss_pred hhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHh
Q 017485 92 PNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGL 171 (371)
Q Consensus 92 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (371)
-.- +.+ ++ ...++..... .........++...+....+..+..+....+..........-
T Consensus 203 l~~---~~~--~~--~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~ 262 (463)
T KOG2816|consen 203 LQE---KER--SD--ATLRELTPGS-------------LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASD 262 (463)
T ss_pred cCc---ccc--cc--ccccccCCCc-------------ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCcee
Confidence 431 111 00 0000000000 000000111222221111122222222222221111111110
Q ss_pred hHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCch
Q 017485 172 YAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISM-ILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSE 249 (371)
Q Consensus 172 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (371)
..+.++ ..++++..+.+ ...+.......++..+.. .+...++-|+....+...-.+....+++.
T Consensus 263 ~~~~yl~~~f~w~~~~~s-~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~------------- 328 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFS-DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA------------- 328 (463)
T ss_pred EEEEEEeeecCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-------------
Confidence 122233 45788888888 666666677777776665 77888999998888888888877777775
Q ss_pred hhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 250 GYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
...|..+......... ....|...+..+-..+++.+|.+.++...+..+.+.++|.+.+.+...
T Consensus 329 ~~~w~~~~~~v~~~~~--~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 329 TETWMMFAAGVVVALA--GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred ccchhhhHHHHHHHhh--cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2233333333332222 223345556667778899999999999999999999999999887643
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=92.59 Aligned_cols=177 Identities=12% Similarity=0.105 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHH-HHhC----CCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCchHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLL-RTLK----LSESASLLLSAVVTGGIGTVLTIISMILVDK-LGRKILFLVGGIQ 225 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~ 225 (371)
+..++..-+.--+++|++-..+-.|+ .+.+ ++..++. -....+....-+..+++||++|| +|+|+.+..+.++
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~-~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail 101 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHAT-GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAIL 101 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 44455555556667788777777666 4555 8988888 66667777777788899999999 5999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh--hhhhhhHHHHHHHHHHHH
Q 017485 226 MFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVCLVFIF 303 (371)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~ 303 (371)
+.++.+.++... ........+.+.+...+.+. .-+....++.|.+|++ +|..+.++.++..++|++
T Consensus 102 ~~iGh~~L~~~~-----------~~~~~gl~i~L~~I~iG~Gl-~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl 169 (498)
T COG3104 102 MAIGHLVLAISS-----------VSGPGGLYIGLALIIVGTGL-FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL 169 (498)
T ss_pred HHHHHHHHhccc-----------cccccHHHHHHHHHHhcccc-ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH
Confidence 999988887741 01233344444444455443 3445556778988865 467788888899999999
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccC
Q 017485 304 FTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (371)
++|.+.+++.+.+++...+..+++....+++.+...++
T Consensus 170 ~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 170 IAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999888888888888888777776653
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-10 Score=95.32 Aligned_cols=301 Identities=13% Similarity=0.159 Sum_probs=158.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCC-------cc---hHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGG-------WG---WRISL 71 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~---Wr~~f 71 (371)
++++|++.|+|.| .....-+|+++....++|.++++....+..+|.++||.++..+...... .. ...+-
T Consensus 133 mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~ 211 (488)
T KOG2325|consen 133 MLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPA 211 (488)
T ss_pred HHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHH
Confidence 6789999999965 4578899999999999999999999999999999999888776654320 11 23455
Q ss_pred hhhHHHHHHHHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhH
Q 017485 72 AMAAAPASILTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQ 150 (371)
Q Consensus 72 ~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (371)
|+.++..++..+. ..++.|.++--..++.+.+ ++.+ ....+.-..+..+.
T Consensus 212 w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~-------------------~~~~----------~~~~~~~~~~~d~~ 262 (488)
T KOG2325|consen 212 WLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV-------------------EEEK----------SDIEKVKKPKLDWV 262 (488)
T ss_pred HHHHHHHHHHHHHHHhheeecccCccccccccc-------------------hhhc----------cchhhhccCChhHH
Confidence 6666666666555 5567776542111111000 0000 00000001122223
Q ss_pred HHHHHHHHHHHHhhchhhhH-hhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHH-HHHHhh---hCchHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIG-LYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIIS-MILVDK---LGRKILFLVGGIQ 225 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-g~l~d~---~grr~~~~~~~~~ 225 (371)
..+.+.+..+.....+...- ...+.....++.+.+++.........+.+++...+. ....-| +.+|..+..+++.
T Consensus 263 ~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~ 342 (488)
T KOG2325|consen 263 AVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLI 342 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHH
Confidence 33444444444444444433 333444466777666655333333333343333322 222223 2345555444333
Q ss_pred HHHHHHHHHHHHHhhh-----CC---CCCCchhh---------HHHHHHH--HHHHHhhhccccccceeeeecccCchhh
Q 017485 226 MFVSQVIIGSIMAAEL-----GD---HGGFSEGY---------AYLILVL--VCVYSAGFSYSWGPLAWLVPSEIFPLEI 286 (371)
Q Consensus 226 ~~~~~~~~~~~~~~~~-----~~---~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 286 (371)
...+..+...-..... .+ .+...... ....+.. ..+++.++-....+.. +.-+|+..++.
T Consensus 343 ~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~-tlySkiLgp~~ 421 (488)
T KOG2325|consen 343 FFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALD-TLYSKILGPRD 421 (488)
T ss_pred HHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHH-HHHHHHhCCcc
Confidence 3333222211110000 00 00000000 1111111 1222222222222233 34488889999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 017485 287 RSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTT 333 (371)
Q Consensus 287 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (371)
+++..++.......+..++|.+........|....+.+.....++..
T Consensus 422 q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~ 468 (488)
T KOG2325|consen 422 QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVA 468 (488)
T ss_pred ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888886665555544444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-09 Score=93.44 Aligned_cols=150 Identities=17% Similarity=0.083 Sum_probs=118.0
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHH
Q 017485 179 TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVL 258 (371)
Q Consensus 179 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (371)
++..++.+.+ ++......+.+++.+.++++.||+|-|+++..+.++..++.++...... ...+..++.
T Consensus 67 ~~~ws~~~k~-~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~ 134 (466)
T KOG2532|consen 67 EYDWSSTEKG-LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVL 134 (466)
T ss_pred eecCCHHHHH-HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHH
Confidence 4667778888 8889999999999999999999999999999999999988888877642 223455666
Q ss_pred HHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-cccch-hhHHHHHHHHHHHHHH
Q 017485 259 VCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH-FKAGI-FFFFGGWVIVMTTFMH 336 (371)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 336 (371)
.++.+++.+..+. ....+.+.-.|+++|++..++......+|..++-++.|.+-+. .||.. +.+.+.+..+..++.+
T Consensus 135 R~lqGl~~g~~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 135 RFLQGLGQGVLFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred HHHhHHHHhHHHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 7777777765554 4457778999999999999999999999999999999999988 77754 4445555555555554
Q ss_pred HhccC
Q 017485 337 LFLPE 341 (371)
Q Consensus 337 ~~~~~ 341 (371)
++..+
T Consensus 214 ~~~~d 218 (466)
T KOG2532|consen 214 LFYSD 218 (466)
T ss_pred HHhcC
Confidence 55443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.3e-09 Score=89.06 Aligned_cols=178 Identities=15% Similarity=0.058 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHH--HHHHHHHHHHHHHHH-HHHHhhhCchHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLS--AVVTGGIGTVLTIIS-MILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~d~~grr~~~~~~~~~~~~ 228 (371)
+..+...++.+...+.....++|.++++.|.+..+.+ +. .....+..++..++. ++..||+||||..++...+...
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iG-l~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALA-FLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHH
Confidence 3445566777878888888999999999999999998 54 355577777777777 5578999999887555433222
Q ss_pred -HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHH
Q 017485 229 -SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
+...+.... .................. +.....+....+..|..+++.++...+.......+|..+++.
T Consensus 82 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~ 151 (390)
T TIGR02718 82 ACLASLALVG---------PDVAGAGWAVGLLACASL-ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGA 151 (390)
T ss_pred HHHHHHHcCC---------cchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222222110 000111122222222212 222222333334456666677677777766666788888888
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHhcc
Q 017485 308 TFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
..+.+.++.+|...+...+...+...+..++.+
T Consensus 152 ~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 152 GTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888888887666555544444444334443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.7e-09 Score=91.02 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
.....++.........+.+..+.+.+.++++.+..+.. +..++......+..++.+.+.||+|.|++.+.+.++..+++
T Consensus 47 V~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~-~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~ 125 (509)
T KOG2504|consen 47 VVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIA-WIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGL 125 (509)
T ss_pred eeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHH-HHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 34444444455555566677778888899999888877 88888888889999999999999999999999999999998
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
++..+.. +.....+..-.+.+.++++.+.|.. ..+... .+++|+.+.|+......+|.++-|.+..
T Consensus 126 ~lssF~~------------~i~~l~lt~gvi~G~G~~~~~~pai-viv~~Y-F~kkR~lA~Gia~~GsG~G~~~~~~l~~ 191 (509)
T KOG2504|consen 126 LLSSFAT------------SLWQLYLTFGVIGGLGLGLIYLPAV-VILGTY-FEKKRALATGIAVSGTGVGTVVFPPLLK 191 (509)
T ss_pred HHHHHHh------------hHHHHHHHHHHHhhccchhhhcchh-hhhhhH-hHHHHHHHHhhhhccCCcceeeHHHHHH
Confidence 8887762 3334455556667777777777765 333444 5689999999999999999999999999
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHHhc
Q 017485 311 AMLCHFKAGIFFFFGGWVIVMTTFMHLFL 339 (371)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (371)
.+.+..||.........+.+..++.....
T Consensus 192 ~l~~~~G~r~~~l~~~~~~l~~~~~~~~~ 220 (509)
T KOG2504|consen 192 YLLSKYGWRGALLIFGGISLNVLVAGALL 220 (509)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 99999997544444333334444433333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=89.15 Aligned_cols=310 Identities=12% Similarity=0.089 Sum_probs=164.8
Q ss_pred hHHHHhhhhHHHHHHHHHHHHhhCC--CCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHH
Q 017485 5 GRVLLGIGIGFANQSVPLYLSEMAP--PKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILT 82 (371)
Q Consensus 5 ~R~l~G~~~~~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~ 82 (371)
.=++.-+|....-..+-+++.|... ++.||...+.......+|.+++..+++.+.+.. ++|..|.+.+++..+..
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~---~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF---GPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---CCeEEehHHHHHHHHHH
Confidence 3456677888888899999999984 334678888888888999999999988877654 48999988887766665
Q ss_pred Hhhh-cCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHH-HHHHHHH
Q 017485 83 VGAL-FMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVM-AILIPFF 160 (371)
Q Consensus 83 ~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 160 (371)
+..+ ..+|.++ +. .++.....++ +.+..... .++.-...++.++.+...+... ...+..+
T Consensus 169 ~~~~~~~~e~~~----~~--~~~~~~~~~~-----~~~~~~~~-------~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 230 (433)
T PF03092_consen 169 IVALFLLEERKV----RP--ADEVFSFGKE-----EVPCLFGS-------FREQLSELWRALQQRAIWQPILFFIFFFNL 230 (433)
T ss_pred HHHHHhhhhccc----cc--cchhhccccc-----ccchhhHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 5544 4444111 00 0100000000 00000000 0000112222222221111111 0111111
Q ss_pred HHhhchhh-hHhhHHHHHHHhC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 161 QQVTGINI-IGLYAPVLLRTLK---LSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
. ...... ..++. .+..+ +++...+ ....+..++.++|..+......+..-|+++....++..+..+.-...
T Consensus 231 ~-~~~~~a~~fy~~---~~~~~gp~fs~~f~~-~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~l 305 (433)
T PF03092_consen 231 P-PSISSASSFYFQ---TDALGGPHFSPSFYG-TLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLL 305 (433)
T ss_pred c-cCCCCccEEEEE---eccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEE
Confidence 0 000011 11111 12234 6777677 56677777888888777777767777777666555444332221111
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
. ...+..-..++. +..+.-..+........+.|.. .+.+|+.|+...|+..++...+.+++..++..+...+.+..
T Consensus 306 v-~~~n~~~Gi~d~--~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 306 V-TRWNLDLGIPDQ--WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred E-EEEeeeeCcCCe--EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 000000001111 2222223333334444445554 45589999999999999999999999999999988887655
Q ss_pred cc--------chhhHHHHHHHHHHHHHHHhccCCCC
Q 017485 317 KA--------GIFFFFGGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 317 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
+. ....+++.++.++.+.+..++|+.++
T Consensus 382 ~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 382 GVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 41 12333334444455555556776444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-12 Score=112.49 Aligned_cols=142 Identities=19% Similarity=0.229 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccc
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYS 269 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (371)
+......++.++|+++.|+++||+|||+.+.++..+..++.++..... ...+.+...+..++.+++.+..
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP----------SYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccccc
Confidence 678888999999999999999999999999999999888887776641 0014555666666666666644
Q ss_pred cccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh---hcccchhhHHHHHHHHHHHHHHHhccCC
Q 017485 270 WGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC---HFKAGIFFFFGGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 270 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (371)
. +....++.|..|++.|+...++.+....+|..++..+...... ...|.....+..+..+...+...+.||+
T Consensus 120 ~-~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 120 Y-VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4 4556888999999999999998888877777776655433322 2236666666666665666666788887
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=85.09 Aligned_cols=187 Identities=18% Similarity=0.105 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHh-C-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTL-K-------LSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGG 223 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 223 (371)
+....+.++......+.+....|.+-..+ + +++...+ .+.....++.++|.++.|++.||+|||++.....
T Consensus 43 i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~-~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~l 121 (538)
T KOG0252|consen 43 IIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLA-LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKEL 121 (538)
T ss_pred HHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHH-HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH
Confidence 33344444444434444444444443322 1 2334445 7888889999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHH
Q 017485 224 IQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIF 303 (371)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 303 (371)
+++.++.+..++.. ..+.+......+.....+.+++.+. --|+..+.++|....+.||+-.+...+.+..|..
T Consensus 122 iImIi~t~~~~~s~------~~~~~~~~m~~L~~~R~~LGiGIGG-DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 122 IIMIICSALSGLSV------GTTSPLGVMMTLCFFRFLLGIGIGG-DYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred HHHHHHHHHhccCC------CCCCCcchhhHHHHHHHHhhccccC-CCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 88888877544421 1111213344555556666666653 3477788889998889999887776666555444
Q ss_pred HHHHHH---HHHHhhc-----------c-cchhhHHHHHHHHHHHHHHHhccCCCCCC
Q 017485 304 FTAQTF---LAMLCHF-----------K-AGIFFFFGGWVIVMTTFMHLFLPETKNVP 346 (371)
Q Consensus 304 ~~~~~~---~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (371)
.+..+. ....++. + |+..+.++++..+..+..-+.+||+++.+
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT 252 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence 333332 2222211 1 44555555555555555555678876543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=83.76 Aligned_cols=299 Identities=15% Similarity=0.062 Sum_probs=153.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCC--cccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPK--HRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 79 (371)
++++-.+.++|.|..=+....++.|.+|++ +|-...+++..+.++|..++|.+.+++.+. .||...|...++-..
T Consensus 120 l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~ 196 (498)
T COG3104 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMI 196 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHH
Confidence 456677888999999999999999999865 366778888999999999999999888875 459999999887766
Q ss_pred HHHHhhhcCCC----ChhhHHhhCCChHHHHHHHHHH-----hCc---cchHHHHHHHHH------H----hcccccccc
Q 017485 80 ILTVGALFMPE----TPNSIIQRSNDPQKAKRMLQRV-----RGT---ADVEAELNDLIR------A----SSISKTINH 137 (371)
Q Consensus 80 ~~~~~~~~~~e----sp~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~------~----~~~~~~~~~ 137 (371)
+.++.++..+. ++.-...+.++..+.......+ ... ....+....... . .+..+.++.
T Consensus 197 ~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 276 (498)
T COG3104 197 IGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKV 276 (498)
T ss_pred HHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 65555443321 1100000000011111000000 000 000000000000 0 000000000
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHH-H-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCc
Q 017485 138 PFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLR-T-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGR 215 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 215 (371)
. .+.-|-...-+.++...+.+..+.-....+..+.....+ + +|++.+. . +..+...+.-++.+++..++..|.++
T Consensus 277 ~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~-~-~fQslNp~~Iii~~pI~a~l~~~l~~ 353 (498)
T COG3104 277 F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPP-A-WFQSLNPFFIILFSPILAALWTKLGR 353 (498)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCH-H-HHHhhCHHHHHHHHHHHHHHHhHhhc
Confidence 0 000000001112222223333333333444444444442 2 3333322 2 45677777777788777788777544
Q ss_pred h--H-----HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhh
Q 017485 216 K--I-----LFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRS 288 (371)
Q Consensus 216 r--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 288 (371)
+ . -+-++..++..+.+++...... ..+. .+..+.++.+....+.. ......+|+...++....|+...+
T Consensus 354 ~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~-~~~~--~~~~s~~~lil~y~l~s-~gEL~iSpvGLs~~t~laP~~~~s 429 (498)
T COG3104 354 GNKQPSTPIKFALGLILAGLGFLILLLAGIW-FGGP--SGLVSVWWLVLSYVLQS-FGELFISPVGLSMVTKLAPPALKS 429 (498)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHh-hcCC--CCCcCHHHHHHHHHHHH-HHHHHhCHHHHHHHHHhChHHHHH
Confidence 3 1 1334444444444444433111 1110 12233343443333333 334456677777888899999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 017485 289 AGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
..+++.......+..++..+.+
T Consensus 430 ~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 430 FIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHHHHHhhceecc
Confidence 8888877777777777666655
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=88.45 Aligned_cols=152 Identities=15% Similarity=0.052 Sum_probs=109.6
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHH
Q 017485 178 RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILV 257 (371)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (371)
++.+....+.+ .....+.++.+++.+.++.+.||++-.+.+....++..+..++-... .+.+..++
T Consensus 74 edl~~~~~~l~-~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ia 139 (495)
T KOG2533|consen 74 EDLKLVGNQLG-VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIA 139 (495)
T ss_pred cccchhhhhhh-hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHH
Confidence 45666667777 88899999999999999999999995555554444433333222222 45666677
Q ss_pred HHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh------hcccc-hhhHHHHHHHH
Q 017485 258 LVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC------HFKAG-IFFFFGGWVIV 330 (371)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~ 330 (371)
..++.+.+-+.++.+. ..++..-+.+++|+.-+|+.++...+|+++++.+...+.. ..+|. .+.+-+++.++
T Consensus 140 lr~llGl~es~~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 140 LRFLLGLFESGGWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHHHHHhcccchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 7777777777666544 5777899999999999999999999999999998877543 33554 44455556666
Q ss_pred HHHHHHHhccCCCC
Q 017485 331 MTTFMHLFLPETKN 344 (371)
Q Consensus 331 ~~~~~~~~~~~~~~ 344 (371)
.+++.++++|+...
T Consensus 219 ~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 219 LGIVVFFFLPDNPS 232 (495)
T ss_pred HHheEEEEecCChh
Confidence 67777778886544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=85.26 Aligned_cols=166 Identities=10% Similarity=-0.073 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH
Q 017485 148 RPQLVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQM 226 (371)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 226 (371)
+++.++.+...++..+........+.|.++++ .|++.++.+ .+.+...+..++..++.|.++||+|.||-++......
T Consensus 5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG-~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l 83 (412)
T PF01306_consen 5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIG-IIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL 83 (412)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHH-HHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence 34445556666666666667777788888865 899999999 9999999999999999999999999777655443332
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCc---hhhhhhhhHHHHHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFP---LEIRSAGQSITVAVCLVFIF 303 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p---~~~r~~~~~~~~~~~~~~~~ 303 (371)
.+....+....+.+ -...-..+...+.+...+..+.+.... .|.+- .+..+.-.|=..+.+.+|.+
T Consensus 84 ~~l~~pff~~v~~p---------ll~~n~~lg~iig~i~l~~~f~~~~~~--~Ea~~er~sr~~~feYG~~R~wGSig~a 152 (412)
T PF01306_consen 84 LLLFGPFFIYVFGP---------LLQSNFWLGAIIGGIYLGLVFNAGVPL--SEAYAERVSRRNGFEYGRARMWGSIGFA 152 (412)
T ss_dssp HHTCHHHHHHTHHH---------HHHTT-HHHHHHTTTTTTTTTTTHHHH--HHHHHHHHHHHHSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHcccchH--HHHHHHHHHHHhcCCcchHHHHhhHHHH
Confidence 22211111111000 000111222223233333333333222 14322 12345556777888999999
Q ss_pred HHHHHHHHHHhhcccchhhHHH
Q 017485 304 FTAQTFLAMLCHFKAGIFFFFG 325 (371)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~ 325 (371)
++..+.|.+.+..+...+++..
T Consensus 153 i~s~~~G~L~~i~p~~~fwi~s 174 (412)
T PF01306_consen 153 IASLLAGILFNINPNIIFWIAS 174 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhheeeeeCccHHHHHHH
Confidence 9999999998755554555433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-07 Score=77.92 Aligned_cols=145 Identities=14% Similarity=0.040 Sum_probs=110.4
Q ss_pred HHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHH
Q 017485 158 PFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIM 237 (371)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 237 (371)
.++.............|.+.+.++.+..+++ +.......+..++++..+++.+|+|+|+.++.+..++++++.++.-..
T Consensus 21 lFfl~G~~~~l~diLip~l~~~f~ls~~~a~-liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa 99 (422)
T COG0738 21 LFFLWGFITCLNDILIPHLKEVFDLTYFEAS-LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA 99 (422)
T ss_pred HHHHHHHHhhcchhhHHHHHHHhCccHHHHH-HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333444556677888889999999999 999999999999999999999999999999999999999988876442
Q ss_pred HhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 238 AAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
...+....+..+++.+.+.+.-- .....++..+.|++..+.-+.+.+.+..+|+.++|.+.+.+..
T Consensus 100 ----------~~~~y~~FL~~lFila~Gi~~Le-taaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 100 ----------SSKSYGFFLVALFILASGIGLLE-TAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred ----------hhhhHHHHHHHHHHHHhhhHHHH-hccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 11233344444444444444322 3334677788888888888899999999999999999988876
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=86.85 Aligned_cols=153 Identities=15% Similarity=0.087 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHH--hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-hHHHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRT--LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGR-KILFLVGGIQ 225 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~ 225 (371)
++..+...+..+.+...+..+..-.-.|+++ .+-+.+..+ +......++..+++++.|+...|.++ |++++.+.++
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG-~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFG-LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhh-HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 3334444444554444444444444445555 666667777 88888999999999999999999986 8888999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHH
Q 017485 226 MFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFT 305 (371)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 305 (371)
+.++.+++..+.+. +....+..++..++.+++.+ .....-.|+++..-.+.|.++++..+....++..+|
T Consensus 112 ~~~g~llY~~l~~~--------~~~~~y~mL~~R~l~Gvg~~--n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 112 AIIGNLLYLALAYV--------PNGVKYLMLVARILTGVGVG--NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred HHHHHHHHHHHHhc--------ccchHHHHHHHHHHcCcCcc--cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence 99999888554321 22245666666666665544 334556788887777888888888887777777777
Q ss_pred HHHHHHH
Q 017485 306 AQTFLAM 312 (371)
Q Consensus 306 ~~~~~~~ 312 (371)
|.+...+
T Consensus 182 p~~q~~f 188 (488)
T KOG2325|consen 182 PTIQLAF 188 (488)
T ss_pred HHHHHHH
Confidence 7665444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-07 Score=82.36 Aligned_cols=71 Identities=14% Similarity=0.010 Sum_probs=52.1
Q ss_pred hhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHH
Q 017485 163 VTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGR-KILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 163 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~ 234 (371)
+..+.....+++.++ ++.|.+..+.+ +......++.++++++.|.++||+|| |+.+.++.++..+......
T Consensus 15 ~~~~~~~~~~l~~~l~~~~g~s~~~iG-l~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 15 WFIWGSWLVTLGSYMSKTLHFSGAEIG-WVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555 66899999999 99999999999999999999999965 6666666655545444433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=88.37 Aligned_cols=168 Identities=16% Similarity=0.109 Sum_probs=99.7
Q ss_pred hhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCchHH-HHHHHHHHHHHHHHHHHHHHhh
Q 017485 167 NIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK----LGRKIL-FLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 167 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
..+..+++.++ +++|.++...+ ...+...+...+..++.|+++|| +||||. ++.+.....++.+.+....
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g-~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~--- 91 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVG-TLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP--- 91 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC---
Confidence 34445555555 67899999999 89999999999999999999998 577554 5555555555544443320
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccC-chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh----
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH---- 315 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 315 (371)
+ ...............++..+.+....|. .++..|.. ++++|+...++.+....+|+.+++.+.+.+...
T Consensus 92 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 166 (437)
T TIGR00792 92 --D--FSATGKLVYAYITYILLGLFYSFVNIPY-WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG 166 (437)
T ss_pred --C--CCcchHHHHHHHHHHHHHHHHHhhcccH-hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 0000112223333344444444333333 34556765 568899999988888888887777665555432
Q ss_pred ---cccchhh-HHHHHHHHHHHHHHHhccCCC
Q 017485 316 ---FKAGIFF-FFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 316 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.+|...+ +.+++..+...+..+..||++
T Consensus 167 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 167 DDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 2343333 333333344444445566643
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-07 Score=78.89 Aligned_cols=136 Identities=17% Similarity=0.183 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccce
Q 017485 195 TGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLA 274 (371)
Q Consensus 195 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (371)
.++..++.++..|.++|++|||..+......+.+......+. . ++..+..-+.+ ++. ......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------------~-~~~~~~~~l~g-~~~-~~~s~~ 133 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------------G-YWFFLLLGLSG-GFS-AIFSVG 133 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------------H-HHHhhhccccc-chh-hhhhhh
Confidence 367888899999999999999999998888777776665553 1 22222222222 222 233455
Q ss_pred eeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh-hHHHHHHHHHHHHHHHhccCCCCCCH
Q 017485 275 WLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIF-FFFGGWVIVMTTFMHLFLPETKNVPI 347 (371)
Q Consensus 275 ~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (371)
.++++|....+.|....|+.+.....+..++|.+.+.+.+..+.... .+.++...+......+++||+..++.
T Consensus 134 ~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 134 FAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 67889999999999999999999999999999999999998885544 44444445555566677888765543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=76.36 Aligned_cols=180 Identities=15% Similarity=0.106 Sum_probs=123.0
Q ss_pred chhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH
Q 017485 147 YRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQM 226 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 226 (371)
..+.........+.....-........|..-...|.+..+.. ++......+..+++..+|.++|++|||+.........
T Consensus 75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~-llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAP-LLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhh-HHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 333444444444444333223333334444455777777778 8888888999999999999999999999988776666
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
++...+-+.. .+....+++-.+.+++.+. .|...++-.|..|..+|...+-+. +...+|.....
T Consensus 154 ~v~~~is~~s-------------pnf~~L~~f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea 217 (528)
T KOG0253|consen 154 GVFGVISGAS-------------PNFASLCVFRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEA 217 (528)
T ss_pred HHHHHhhcCC-------------CCeehhhHHHHHHhccCCC--ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHH
Confidence 5554443332 3445556666666666654 444445557999999999877666 66777887777
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 307 QTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.+.-....+.||...+.............++++||+.
T Consensus 218 ~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESp 254 (528)
T KOG0253|consen 218 LLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESP 254 (528)
T ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCc
Confidence 7776667777888777777777777777788888864
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=83.52 Aligned_cols=140 Identities=17% Similarity=0.067 Sum_probs=87.3
Q ss_pred hhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCchHH-HHHHHHHHHHHHHHHHHHHHh
Q 017485 166 INIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK----LGRKIL-FLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 166 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~ 239 (371)
...+..+++.++ +.+|.+....+ ....+..+...+..++.|+++|| +|||+. ++.+.+...++..++....
T Consensus 25 ~~~~~~~l~~~~t~~~gls~~~~g-~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p-- 101 (444)
T PRK09669 25 WQTVMLFLAYFYTDVFGLSAAIMG-TMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTP-- 101 (444)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCC--
Confidence 445556666666 67999999999 88999999999999999999999 667555 4455555555544332210
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccC-chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
+. ..........+...++..+......|. .++.+|.. ++++|....+.......+|+.+++.+...+..
T Consensus 102 ---~~--~~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~ 171 (444)
T PRK09669 102 ---DF--GATGKIIYACVTYILLSLVYTAINVPY-CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVD 171 (444)
T ss_pred ---CC--CcchHHHHHHHHHHHHHHHHHhhcchH-HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001112233333334444444333333 35667776 45778888888888888887777765544443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.1e-08 Score=70.26 Aligned_cols=86 Identities=28% Similarity=0.402 Sum_probs=73.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.+++.|++.+...+....++.|.+|+++|++..++.+....+|..+++.+++.+.+. .+|++.+++.++..++.
T Consensus 54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999999999887754 45999999988877766
Q ss_pred HHh-hhcCCC
Q 017485 82 TVG-ALFMPE 90 (371)
Q Consensus 82 ~~~-~~~~~e 90 (371)
.+. .++.||
T Consensus 131 ~~~~~~~~~~ 140 (141)
T TIGR00880 131 FILLAFLLPE 140 (141)
T ss_pred HHHHhhcCCC
Confidence 665 444554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-06 Score=74.54 Aligned_cols=275 Identities=14% Similarity=0.123 Sum_probs=145.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCC-----CcchH--------
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKG-----GWGWR-------- 68 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~Wr-------- 68 (371)
++++-.+.|+|.+..+..--.|++|..+++++.+..++.-+....+.++|..+-..+....+ ..+-+
T Consensus 105 ~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (461)
T KOG3098|consen 105 LYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLF 184 (461)
T ss_pred HHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhh
Confidence 35677899999999999999999999999999999999998888888888776554433221 01121
Q ss_pred ------HHHhhhHHHHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhh
Q 017485 69 ------ISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKI 142 (371)
Q Consensus 69 ------~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (371)
..+.+...+..+..+...+.|.+. ....++. . +......++..
T Consensus 185 ~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~-~~~~~~~----------------------------~--~~~~~~~l~~~ 233 (461)
T KOG3098|consen 185 IDFEIKVLFGVLLAISVLSIINFDFLPSKD-VVNCKSS----------------------------S--ETSFSELLKLT 233 (461)
T ss_pred hhHHHHHHHHHHHHHHHHHhhheeecCccc-hhhhhhh----------------------------c--cccHHHHHHHH
Confidence 111111111111111122222211 0000000 0 00111222333
Q ss_pred hhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHH--H-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---hCch
Q 017485 143 IQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLL--R-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDK---LGRK 216 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~grr 216 (371)
++....++.+. +...++.............|.-+ . ..+.+......+.....+++.+++....+.+.+| +||+
T Consensus 234 ~~l~~~~~ml~-L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~ 312 (461)
T KOG3098|consen 234 FKLLKTPKMLL-LFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK 312 (461)
T ss_pred HHHhcCHhHHH-HHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC
Confidence 33222233332 22222222222222222223222 1 3444444444366777788888888888888765 6888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-----CchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhh
Q 017485 217 ILFLVGGIQMFVSQVIIGSIMAAELGDHGG-----FSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQ 291 (371)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 291 (371)
+.+.++..+..+..++.........+..++ ...+......+...+.+.+-+ .+....+.++.+++ ++.|..+.
T Consensus 313 ~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~-~~~t~~~~ii~~~~-~~~~~~~f 390 (461)
T KOG3098|consen 313 PTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA-CFNTQRYVIIALLY-PDDRAQAF 390 (461)
T ss_pred cchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH-HHHHHHHHHHHHHh-cCchHHHH
Confidence 888888777777666655443222211110 111123344455555555544 33345556767887 57788888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017485 292 SITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~ 310 (371)
++.-.-..+.+.++-...+
T Consensus 391 si~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 391 SLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 8877766666655544443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-07 Score=79.84 Aligned_cols=178 Identities=13% Similarity=0.085 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----chHHHHHHH
Q 017485 150 QLVMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLG-----RKILFLVGG 223 (371)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~ 223 (371)
..+..+...++.+... .......+.++ +++|.+..+.+ .......+...+-.+ +|.++||++ ||+.++++.
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~-~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQ-RLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG 102 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence 3444555566666666 55555555555 56899999987 666777777777555 999999997 666666665
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhh---hHHHHHHHHH
Q 017485 224 IQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAG---QSITVAVCLV 300 (371)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~---~~~~~~~~~~ 300 (371)
++.. ...+..... .++..........+..++.+.. ....-.+..|..+ +.+... .++......+
T Consensus 103 ~l~~--~~~~~~l~~---------~~~~~~~~~~~~~l~~~~~a~~-dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~ 169 (468)
T TIGR00788 103 LLGS--AILYGLLPG---------KVSSAKVAAAFIFLAALAKALY-DVLVDSLYSERIR-ESPSAGPSLVSWMWGASAT 169 (468)
T ss_pred HHHH--HHHHHhccc---------ccchHHHHHHHHHHHHHHHHHH-HHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHH
Confidence 4442 111111110 1111222222333333333322 2344466678877 444443 3344444568
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccCCC
Q 017485 301 FIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
|..+++.+.|.+.+..++...+...+...+...+...+.+|.+
T Consensus 170 G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 170 GGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999888876665555555555555567778764
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.8e-07 Score=79.42 Aligned_cols=149 Identities=15% Similarity=0.054 Sum_probs=89.8
Q ss_pred HHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhCchHH-HHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVD----KLGRKIL-FLVGGIQMFV 228 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~-~~~~~~~~~~ 228 (371)
..+..+........+..|++.|+ +.+|.+....+ ....+.-+...+..++.|.++| |+|||+. ++.+.+.+.+
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg-~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i 89 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVG-TLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSV 89 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHH
Confidence 33333334444555666777777 55799999999 8888899999999999999999 4588554 4555555555
Q ss_pred HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccC-chhhhhhhhHHHHHHHHHHHHHHHH
Q 017485 229 SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
+..++... .+ ...........+...++..++.....|- .++.+|+. ++++|....+.-.....+++.+.+.
T Consensus 90 ~~~llf~~-----p~--~~~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~ 161 (473)
T PRK10429 90 VLFLLFSA-----HL--FEGTAQYVFVCVTYILWGMTYTIMDIPF-WSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG 161 (473)
T ss_pred HHHHHHcC-----CC--CCccHHHHHHHHHHHHHHHHHHHHcchH-HhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333211 00 0001112223333334444444333333 35667877 5789998888867777777666655
Q ss_pred HHHHH
Q 017485 308 TFLAM 312 (371)
Q Consensus 308 ~~~~~ 312 (371)
+...+
T Consensus 162 ~~~~~ 166 (473)
T PRK10429 162 FTLPF 166 (473)
T ss_pred HHHHH
Confidence 54443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-06 Score=71.57 Aligned_cols=160 Identities=17% Similarity=0.050 Sum_probs=94.2
Q ss_pred hhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchh
Q 017485 171 LYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEG 250 (371)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (371)
.|.-..++++|++..+.. .+.....+...+...+.|.++||+|||+.-++.+++..++++.--. +
T Consensus 55 pY~Y~LY~~yg~~~~qIa-~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--------------~ 119 (354)
T PF05631_consen 55 PYLYALYESYGFSEHQIA-ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--------------S 119 (354)
T ss_pred chhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--------------c
Confidence 333345578999999999 7788888888888899999999999999988887777777653221 4
Q ss_pred hHHHHHHHHHHHHhhhccccccceeeeeccc----CchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcc--cchhhH
Q 017485 251 YAYLILVLVCVYSAGFSYSWGPLAWLVPSEI----FPLEIRSAGQSITVAV-CLVFIFFTAQTFLAMLCHFK--AGIFFF 323 (371)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~ 323 (371)
+.+..++.-++.+......+...=.-++.|. +|++..+...+..... ..+.++.+..+...+.+..+ ...++.
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~ 199 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFD 199 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHH
Confidence 4555566666666555544333222233443 3444444444433322 22334444444455555554 344555
Q ss_pred HHHHHHHHHHH-HHHhccCCCCC
Q 017485 324 FGGWVIVMTTF-MHLFLPETKNV 345 (371)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~~ 345 (371)
.++.+.+++.+ .....+|+.+.
T Consensus 200 ~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 200 AAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHHHHHhcccccCCC
Confidence 55544444433 33345565443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-06 Score=77.73 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=93.5
Q ss_pred HHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCchHHHH-HHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK----LGRKILFL-VGGIQMFVSQ 230 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~ 230 (371)
+.-+........+..|+..++ +..|.++...+ ....+.-+...+.-++.|.++|| +|||+..+ ++.+.+.++.
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g-~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVG-TMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC 94 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence 333333344455566666666 66899999999 88889999999999999999997 57765554 5555665554
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCc-hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFP-LEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
.++.... + ...........+..+++..++.....|- .++.+|+.+ +++|++.++.-...+.+|..+++.+.
T Consensus 95 ~llf~~p-----~--~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 95 VLAYSTP-----D--LSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHhCC-----C--CCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333210 0 0001112223333334444444433333 255567665 78999999998888888887777765
Q ss_pred HHHHhh
Q 017485 310 LAMLCH 315 (371)
Q Consensus 310 ~~~~~~ 315 (371)
..+...
T Consensus 167 ~plv~~ 172 (460)
T PRK11462 167 MPLVNL 172 (460)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.4e-07 Score=76.28 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=78.6
Q ss_pred HHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGR-KILFLVGGIQMFVSQVIIGSIM 237 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~ 237 (371)
++.++.....+..+.|.++++.|++..+.+ ...+...+..+++.++.|.++||.++ |+.+.+..++..+........
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG-~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~- 88 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLESRGFSGTQIG-ILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS- 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 333444455667788999999999999999 89999999999999999999999864 555555444444433333221
Q ss_pred HhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHH
Q 017485 238 AAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
...+..+....++..... ...|+.-++..+... .++.-.|-....+.+|-.++..
T Consensus 89 ------------~~f~~~~~~~~l~~~~~~-p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~ 143 (400)
T PF03825_consen 89 ------------SSFWWLFVIMLLFSFFFS-PTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAAL 143 (400)
T ss_pred ------------ccHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHH
Confidence 223334444444444332 222333333333322 3344455555555555555543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-07 Score=75.25 Aligned_cols=283 Identities=11% Similarity=0.097 Sum_probs=149.9
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTV 83 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 83 (371)
+..++-|++.+. ..+-.+|+--..|+++-.++.+...++.-+|..++.++|-.+..... ...+..+++......+..+
T Consensus 99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~-~sy~~L~~isl~~~~~a~~ 176 (412)
T PF01770_consen 99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG-VSYFQLNYISLASVSLALL 176 (412)
T ss_pred HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 455677777654 56777888888898888999999999999999999998887765432 4577777777666566666
Q ss_pred hhhcCCCChhhHHhhCCChHHHHHHHHHHhCcc--chHHHHHHHHHHhc-ccccccchhhhhh---hccchhHHHHHHHH
Q 017485 84 GALFMPETPNSIIQRSNDPQKAKRMLQRVRGTA--DVEAELNDLIRASS-ISKTINHPFKKII---QRKYRPQLVMAILI 157 (371)
Q Consensus 84 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 157 (371)
..+++|..++-..-+++..++.. .++.+..+ +.+++..+..+..+ .....+..++.++ ++..+++.++.-.+
T Consensus 177 ~~~fLP~~~~S~~f~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSl 254 (412)
T PF01770_consen 177 IALFLPMPKRSLFFHRKPPAEQD--ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSL 254 (412)
T ss_pred HHHHcCCCCcccceeccCccccc--cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 66777765542211111111100 00000000 00000000000000 0011111222222 22334444554555
Q ss_pred HHHHHhhchhhhHhhHHHHHHHh---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 158 PFFQQVTGINIIGLYAPVLLRTL---KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
.+....++++.+..|...+.++. +....-.+ ..-....+.+.++++..|++..++.+..-+.++......+.+++.
T Consensus 255 WWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG-~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~l 333 (412)
T PF01770_consen 255 WWAFATCGYYQVINYVQSLWDTVPPSDNESVYNG-AVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFL 333 (412)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccch-HHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777766 22233334 666677777888888888886666665444433333322222222
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHH
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIF 303 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 303 (371)
.. ..++.+......+++......... +...-++.....+.-+...|+.+...-+...
T Consensus 334 m~-----------~t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 334 MS-----------FTGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQT 390 (412)
T ss_pred HH-----------HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHH
Confidence 21 115566667777766666554333 2222223333455556666665555444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.9e-08 Score=82.36 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=115.0
Q ss_pred chhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 017485 165 GINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDH 244 (371)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (371)
+...+..++-..+++.+..+..-+ ........+.++.-++.+++.+|+|+-+++..++.+..+=.+.+..+
T Consensus 386 g~~lv~tFLfWHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-------- 456 (618)
T KOG3762|consen 386 GVGLVFTFLFWHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-------- 456 (618)
T ss_pred HHHHHHHHHHHHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--------
Confidence 334444455445688887776667 77788888999999999999999999999999988888887777776
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcccchhhH
Q 017485 245 GGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAV-CLVFIFFTAQTFLAMLCHFKAGIFFF 323 (371)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (371)
.++|..+.+=.+-+...+..|..+. +|++++.|++.|+++.++.... ..+|-.+|+.+.|.+.+..+....+-
T Consensus 457 -----~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~ 530 (618)
T KOG3762|consen 457 -----QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR 530 (618)
T ss_pred -----cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence 6688888888888888887777664 8889999999999999998766 45788888899898888887544333
Q ss_pred H
Q 017485 324 F 324 (371)
Q Consensus 324 ~ 324 (371)
+
T Consensus 531 ~ 531 (618)
T KOG3762|consen 531 I 531 (618)
T ss_pred H
Confidence 3
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=82.28 Aligned_cols=144 Identities=16% Similarity=0.187 Sum_probs=92.9
Q ss_pred hhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhCchHHHH-HHHHHHHHHHHHHHHHHHhh
Q 017485 167 NIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVD----KLGRKILFL-VGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 167 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (371)
..+..+++.++ +..|.++...+ .......+...+..++.|.++| |+|||+..+ ++.+...++..++......
T Consensus 18 ~~~~~~~~~f~~~~~gl~~~~~g-~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~- 95 (428)
T PF13347_consen 18 SLLSSYLLYFYTDVLGLSPALAG-LILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPA- 95 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccc-
Confidence 33444555555 66799999998 8888888999999999999999 789877655 5556666655554432000
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFP-LEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
+...........+..+++..+......|. .++.+|+.+ +++|....+.-.....+|..+...+.+.+.+..+
T Consensus 96 ----~~~~~~~~~~~~~~~~l~~~~~t~~~i~~-~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g 168 (428)
T PF13347_consen 96 ----GLSFTAKLVWLFVFYILFDIAYTFVQIPY-NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG 168 (428)
T ss_pred ----hhhhhhHHHHHHHHHHHHHHhhhhccCch-hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 00000112223444444555555544443 366688887 5689999999888888888777777666665443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-06 Score=68.14 Aligned_cols=157 Identities=13% Similarity=0.019 Sum_probs=115.6
Q ss_pred hchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 017485 164 TGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGD 243 (371)
Q Consensus 164 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (371)
.....+...++.+-+++|.+...++ +......+...+.+++..++.+|+|.++.+..+.++..++..+=..
T Consensus 26 ~~itsvgPLL~~Ir~~~gls~s~aG-lLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~-------- 96 (395)
T COG2807 26 PAITSVGPLLDEIRQDLGLSFSVAG-LLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL-------- 96 (395)
T ss_pred hhhhhhhhhHHHHHHHhcccHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--------
Confidence 3445566677788899999999999 8999999999999999999999999999998887777766544322
Q ss_pred CCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhh
Q 017485 244 HGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF-KAGIFF 322 (371)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 322 (371)
...+..+....+.+.+.+.+..-+ ...+-+-|| ++-+..+|++.....+++.+++.+...+.++. +|....
T Consensus 97 ------~~~~~L~~gt~l~G~gIav~nVLL-PslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 97 ------GGLPLLFLGTLLAGAGIAVINVLL-PSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred ------ccHHHHHHHHHHHHhhHHHHHHhh-hHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 224455555566666665544333 356678887 45688999999999999999999988888877 466555
Q ss_pred HHHHHHHHHHHHHHH
Q 017485 323 FFGGWVIVMTTFMHL 337 (371)
Q Consensus 323 ~~~~~~~~~~~~~~~ 337 (371)
.+-+...+.+++.++
T Consensus 169 ~~WAl~allAl~~Wl 183 (395)
T COG2807 169 GFWALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555445554444443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=55.57 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=57.8
Q ss_pred HHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQ 225 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 225 (371)
..++..+.+...+..|.|.++++.|++..+.+ ....+..+..+++.+++|.++||+++++........
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 34455556667788899999999999999999 999999999999999999999999999987765544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-05 Score=69.22 Aligned_cols=263 Identities=15% Similarity=0.070 Sum_probs=139.7
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHHh-hhcC----CCChhhHHhhCCChHH
Q 017485 30 PKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTVG-ALFM----PETPNSIIQRSNDPQK 104 (371)
Q Consensus 30 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~----~esp~~~~~~~~~~~~ 104 (371)
++.+.+.++...-.--+.-+++|++.+.+.... +.+....+.+...++..+. ++++ ...|. +..|+++.++
T Consensus 144 ~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~---s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~ 219 (432)
T PF06963_consen 144 PGALARMNATMRRIDLFCKLLAPLFVGLLMTFA---SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSES 219 (432)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCccc
Confidence 344556666666666678889999988776643 4777777777777776665 4332 22232 1111110110
Q ss_pred HHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCc
Q 017485 105 AKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSE 184 (371)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 184 (371)
......+ ...+.+.+........+.-++....++ ...+.+.+.......+.++. ...+...+..|+...|+++
T Consensus 220 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~----~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~G~s~ 292 (432)
T PF06963_consen 220 ESSSDEE--SSSESSSDPSILKRLWNPLRTIIRGWR----TYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQGYSP 292 (432)
T ss_pred ccccccc--ccccccchhhHHHHHHHHHHHHhccHH----HHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHCCCCH
Confidence 0000000 000000000000000000000112222 23334444433333333332 3334556677777789999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHh
Q 017485 185 SASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSA 264 (371)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (371)
...+ ..-....+.++.|+++..++.+|+|..+.-..+......+..+........ .. +.+..+....+....+--.
T Consensus 293 ~~ig-i~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~--~~-~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 293 SVIG-IFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAP--GS-PFSSISAYLLLGGIALSRI 368 (432)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcC--CC-CchhhHHHHHHHHHHHHHH
Confidence 9998 888888999999999999999999998887777766655544433332111 10 0011122222222222222
Q ss_pred hhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 265 GFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 265 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
|.= ++-....-++.|..|+++||+..|+-+..+++...+.-.+
T Consensus 369 GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 369 GLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 221 2222333455899999999999999999988887766544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.7e-06 Score=72.01 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=47.0
Q ss_pred hchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh----CchHHH-HHHHHHHHHH
Q 017485 164 TGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL----GRKILF-LVGGIQMFVS 229 (371)
Q Consensus 164 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~~~ 229 (371)
........+++.|+ +..|++..+.+ ....+..+...+..++.|+++||. |||+.. ..+.+...+.
T Consensus 22 ~~~~~~~~~l~~y~~~~~gl~~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~ 92 (448)
T PRK09848 22 FAFAMGALFLLSYYTDVAGVGAAAAG-TMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence 33344444555566 55799999999 889999999999999999999996 667655 4444444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.3e-05 Score=69.79 Aligned_cols=144 Identities=15% Similarity=0.005 Sum_probs=93.2
Q ss_pred hhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 017485 166 INIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK-LGRKILFLVGGIQMFVSQVIIGSIMAAELGD 243 (371)
Q Consensus 166 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (371)
+|++...+..++ +.+|.+...+. ..........-+..+++|+++|+ +||++.+.++.++..++..++..... ..
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~-~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~---~~ 78 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTST-VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI---PS 78 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC---cc
Confidence 344444444444 56888888877 55666666667777889999996 79999999998888887766654311 00
Q ss_pred CCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 244 HGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE---IRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
..........++.+.+...+.+. .-|...+...|.++++ .|.....+.+...++|+.+++.+.+++.+..
T Consensus 79 --~~~~~~~~~~l~gLaLia~G~Gg-iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 79 --SGHPLHDLLDLLGLALIALGTGG-IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred --cccchHHHHHHHHHHHHHhhccc-cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00011122234444444444443 3344456667777643 4677888888999999999999999887543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-05 Score=66.77 Aligned_cols=154 Identities=19% Similarity=0.139 Sum_probs=100.0
Q ss_pred HHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCchHH-HHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK----LGRKIL-FLVGGIQMFV 228 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~ 228 (371)
....-+.....+.....|+..++ +..|.++..++ ....+.-+...+.-++.|.++|| +||++. ++.+.+..++
T Consensus 17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG-~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i 95 (467)
T COG2211 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAG-TIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI 95 (467)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHH-HHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence 33444444445556677777777 55899999999 88888889999999999999997 465554 4555455555
Q ss_pred HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccC-chhhhhhhhHHHHHHHHHHHHHHHH
Q 017485 229 SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVCLVFIFFTAQ 307 (371)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~ 307 (371)
...++.... +...........+...++..++.....|-. ++.+|+- .+++|.+..+.-+....+++.+...
T Consensus 96 ~~~l~F~~p-------~~~~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~ 167 (467)
T COG2211 96 VAVLLFITP-------DFSMTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAV 167 (467)
T ss_pred HHHHHHcCC-------CcccCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544443321 000112344445555566666665544442 4445543 3578999999988888888888888
Q ss_pred HHHHHHhhcc
Q 017485 308 TFLAMLCHFK 317 (371)
Q Consensus 308 ~~~~~~~~~~ 317 (371)
+.+.+....+
T Consensus 168 ~~~plv~~~g 177 (467)
T COG2211 168 LFPPLVKLFG 177 (467)
T ss_pred HHHHHHHHhC
Confidence 7777766543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-05 Score=66.06 Aligned_cols=137 Identities=17% Similarity=0.116 Sum_probs=85.8
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----chHHHHHHHHHH-HHHHHHHHHHHHhhhCC--CCCCc
Q 017485 177 LRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLG-----RKILFLVGGIQM-FVSQVIIGSIMAAELGD--HGGFS 248 (371)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~ 248 (371)
..|++.+....+ .......+. .+..+..|+.+|+.+ ||...++..... ..+..+..... ..... .+...
T Consensus 7 IvEL~vpA~lv~-~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~-~~l~~~~~~~~~ 83 (403)
T PF03209_consen 7 IVELGVPAWLVA-LLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFAL-LLLAESGQQSSG 83 (403)
T ss_pred HHHhccHHHHHH-HHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHH-HHHccccccccc
Confidence 466777766666 444444433 345788999999999 887766554444 33333333322 22222 11111
Q ss_pred hhhHH--HHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 249 EGYAY--LILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 249 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
....+ .....+.+++.+.+..-.+. .++.+|..|+++|+.+.++.....-+|..++..+.+.+.+.+.
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~-lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSF-LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS 153 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHH-HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 12222 23333444445554443333 4677899999999999999999999999999999999998876
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00014 Score=64.22 Aligned_cols=144 Identities=18% Similarity=0.188 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccc
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYS 269 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (371)
+..++..+...+..++.|-++|+-++||.++..+...++......... +++..+...++.++...++...
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v----------~~~~~~~~~~l~iia~v~~~~~ 143 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV----------SPGQWWLALVLFIIANVGYEAS 143 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh----------CcchHHHHHHHHHHHHHHHHHH
Confidence 556677788888889999999999988887766555554433333321 1233344444444444454433
Q ss_pred cccceeeeecccCchhhh--------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-c----
Q 017485 270 WGPLAWLVPSEIFPLEIR--------------------------SAGQSITVAVCLVFIFFTAQTFLAMLCHFK-A---- 318 (371)
Q Consensus 270 ~~~~~~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 318 (371)
. ....++..|+.+++.+ ++.++.....+++|+.+.-.+.-.+....+ .
T Consensus 144 ~-vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~ 222 (477)
T PF11700_consen 144 N-VFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNT 222 (477)
T ss_pred H-HHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 2 3444677888888888 899999999999999887766554433222 1
Q ss_pred ---ch-hhHHHHHHHHHHHHHHHhccCCCC
Q 017485 319 ---GI-FFFFGGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 319 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
.. +.+.++...+..+-..+++|+.++
T Consensus 223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 22 222233333445555566776644
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.21 E-value=9e-05 Score=62.77 Aligned_cols=275 Identities=15% Similarity=0.114 Sum_probs=124.9
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTV 83 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 83 (371)
++=.+.+++.|........+. ..+++ ...+-+.+|.+.+.++|+..-..+.. .+ .+-|..+++...+.++..+
T Consensus 117 ~Gv~las~ssg~GE~tfL~lt-~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g-~s~~~tll~~~~lp~~~~~ 189 (402)
T PF02487_consen 117 LGVVLASLSSGLGEVTFLSLT-HFYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LG-LSPRTTLLIMLVLPAIFLL 189 (402)
T ss_pred HHHHHHhhhhhhhHHHHHHHH-HhcCc----cccccccCCcChhhHHHHHHHHHHHH-hC-cCHHHHHHHHHHHHHHHHH
Confidence 445667777777777777764 45553 35677888888888888877655555 22 3457777777766655555
Q ss_pred hhh-cCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHH
Q 017485 84 GAL-FMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQ 162 (371)
Q Consensus 84 ~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (371)
.++ .+|.++... ..++ .++ . ....++..++...+.+.+...+.++++-++. .++.++ .++-.+..
T Consensus 190 ~~f~~L~~~~~~~-~~~~-~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~k~Ll~-ymiPL~lV 255 (402)
T PF02487_consen 190 SYFFLLPSPPTNR-PYQE-SES-E--------DEAEDDLLESETSESKPDSSSKLSFKEKLKR--LKPLLW-YMIPLFLV 255 (402)
T ss_pred HHHHhhccccccC-CCcc-cCC-C--------CcccccccccccccccccccchhhHHHHHHH--HHHHHH-HHHHHHHH
Confidence 444 444332110 0000 000 0 0000000000000000111112223322211 111222 22222211
Q ss_pred hhchhhh-HhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 163 VTGINII-GLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240 (371)
Q Consensus 163 ~~~~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
....|.+ .-..|.+. ..-..+..+...+....+.++.+++.-....+ |+ |++.+.. ++..+-.+++.+-..+.
T Consensus 256 Y~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils-~LQ~~nl~~~~l~s~~~ 330 (402)
T PF02487_consen 256 YFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILS-LLQVINLVFLLLQSWYR 330 (402)
T ss_pred HHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 1222222 22233332 11122222222256666776666654322111 22 3332222 22222222211111000
Q ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017485 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAM 312 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (371)
--++.|..++.++.-+...+..+......+ .|-.|+++|--++|.....-.+|..++..+.-.+
T Consensus 331 -------fipsi~ivf~lif~eGLlGGa~YVNtF~~I-~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 331 -------FIPSIWIVFVLIFYEGLLGGASYVNTFYRI-SEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred -------HhhHHHHHHHHHHHHHHhhhHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 003455555556655666665665554444 5667899999999999888888888877665443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.9e-05 Score=61.79 Aligned_cols=276 Identities=11% Similarity=0.063 Sum_probs=141.1
Q ss_pred HHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHHhhh
Q 017485 7 VLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTVGAL 86 (371)
Q Consensus 7 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 86 (371)
++-|...+ ...+-++|+-+..+++++.+..+.-.+..-.|...|..++..+..... .+.+..-.+.-.-..+..+..+
T Consensus 103 ~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~ 180 (433)
T KOG3810|consen 103 FFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLAL 180 (433)
T ss_pred hhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHh
Confidence 44555533 345667888888899999999999998888888888888877765432 3355555555544455555567
Q ss_pred cCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHhhch
Q 017485 87 FMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGI 166 (371)
Q Consensus 87 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (371)
++|..+|-...+.+ +++ ....+.++.++ +.+..+..+ .....+.+-++...+++.+.--.+.+....+++
T Consensus 181 fLP~v~rSl~f~~~-~~~--~~v~~~e~~~~-~~~~~~~l~------~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~ 250 (433)
T KOG3810|consen 181 FLPRVKRSLYFHRL-EDK--ISVGDLEEMNP-QASYMSYLR------GAFVLLWRDLQECYSNPRLLKWSLWWALASCGY 250 (433)
T ss_pred hCCCCchhhhhhcc-ccc--ceeccchhcCc-cchhhHHHH------HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchh
Confidence 77766543333322 111 00000000000 000000000 000111111111122222222333344445566
Q ss_pred hhhHhhHHHHHHHhC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 017485 167 NIIGLYAPVLLRTLK-LSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHG 245 (371)
Q Consensus 167 ~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (371)
+-...|...+-++.. -+.....+..=.+..+.+.++.+..|.+--.+.|..-++++..-...+.+++...
T Consensus 251 ~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~--------- 321 (433)
T KOG3810|consen 251 YQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA--------- 321 (433)
T ss_pred HHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh---------
Confidence 666666666656653 2222222244556667778888888888766666533333222222222221111
Q ss_pred CCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHH
Q 017485 246 GFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
...+.|...+...++...+....... ...+++....+.-|...|+.....-+...+..
T Consensus 322 --~t~~Iw~~Ya~yvlfr~~y~l~itiA-~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT 379 (433)
T KOG3810|consen 322 --QTQHIWVCYAGYVLFRVIYQLTITIA-TFQIARNLSSELFGLVFGINTFVALILQSILT 379 (433)
T ss_pred --cccceehhhhhHHHHHhhHhhhhhHH-HHHHHHhhhhhhheeeeehHHHHHHHHHHhhe
Confidence 22456777777777766665544333 23334555667778888887666655554443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00013 Score=53.35 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=90.7
Q ss_pred hhchhhhHhhHHHHHHHhCCC-----chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHH
Q 017485 163 VTGINIIGLYAPVLLRTLKLS-----ESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIM 237 (371)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 237 (371)
+.++.......-.++++.+.+ ....++....+......+.+++.+.+.+++|.|+.++++.+...+-......
T Consensus 9 Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-- 86 (156)
T PF05978_consen 9 FTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-- 86 (156)
T ss_pred HHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--
Confidence 334444444444444443332 1233446677777788888899999999999999999988777654443322
Q ss_pred HhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 238 AAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
.+.+..+....+.+++.+..|.... .++.+...++.+++-.++...+...+..+|..+.-
T Consensus 87 ------------~~~~~l~~~s~l~G~~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 87 ------------PNSYTLYPASALLGFGAALLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred ------------hhHHHHHHHHHHHhhhhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777788888877776553 56678888889999888888887777666665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00017 Score=61.00 Aligned_cols=127 Identities=14% Similarity=0.017 Sum_probs=83.3
Q ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHH--HHHH
Q 017485 180 LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAY--LILV 257 (371)
Q Consensus 180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 257 (371)
+| +...+. +...++.+..++..+.+.|+.||+|-|....++....+++..+=..... +..++..+ ....
T Consensus 75 Yg-s~~~~~-wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~-------p~v~~~f~~~l~~~ 145 (480)
T KOG2563|consen 75 YG-SSSAAD-WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL-------PFVPPLFRRPLTHT 145 (480)
T ss_pred hc-chHHHH-HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC-------ccccccchhhhhHH
Confidence 55 555555 8899999999999999999999999999999999998888766444321 00012222 2222
Q ss_pred HHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 258 LVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
.-.+.....- ....++.-...--||+++|+++..+..+...+|.+++..+-+.+..+.
T Consensus 146 Gq~iaa~Aq~-Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 146 GQSIAAAAQP-FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hHHHHHHhhh-HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 2222222211 111222234345689999999999998888888888877766655443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0013 Score=57.61 Aligned_cols=124 Identities=11% Similarity=0.004 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC----------chh--------
Q 017485 190 LSAVVTGGIGTVL-TIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGF----------SEG-------- 250 (371)
Q Consensus 190 ~~~~~~~~~~~~~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-------- 250 (371)
++-....+...+. .++.+++++|++|++.+............+++...+......++. +.+
T Consensus 47 fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~ 126 (472)
T TIGR00769 47 FLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAIL 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHH
Confidence 4444333333333 788899999999999988877777777666666543211110000 000
Q ss_pred hHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017485 251 YAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAML 313 (371)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (371)
..|....+............+-+.|.+++|++..++..+-.++....++++..+++.+..++.
T Consensus 127 ~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 127 RIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222222222222222233366788899999999999999999999999999998887766
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0015 Score=55.62 Aligned_cols=161 Identities=12% Similarity=0.019 Sum_probs=100.9
Q ss_pred hhHhhHHHHH-HH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 017485 168 IIGLYAPVLL-RT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHG 245 (371)
Q Consensus 168 ~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (371)
..-.++..|+ +. .|++.++...-+.-...=..+...+....+.|..+-|++++++.+...+...++.+.
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--------- 91 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--------- 91 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 3334444444 43 788887766333333334455566677889999999999999888877776665553
Q ss_pred CCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc--cchhhH
Q 017485 246 GFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK--AGIFFF 323 (371)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 323 (371)
.+.....+.-+.++...+.-. ..++|+-...|+++--++.+...+..-+|.+++..++..+....+ +.....
T Consensus 92 ----~sv~~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~ 165 (412)
T PF01770_consen 92 ----TSVLAMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNY 165 (412)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 334445555555555544322 223444455688888888888888888888888877666655333 333334
Q ss_pred HHHHHHHHHHHHHHhccCCC
Q 017485 324 FGGWVIVMTTFMHLFLPETK 343 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ 343 (371)
+.......+++..+++|..+
T Consensus 166 isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 166 ISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 44455556666667777654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00079 Score=52.90 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=39.9
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhccc--CCCcchHHHHhhhHHHHHHHHHhhhcC
Q 017485 30 PKHRGAFNIGFQVCLAIGVLSANLLNYGTQKI--KGGWGWRISLAMAAAPASILTVGALFM 88 (371)
Q Consensus 30 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~Wr~~f~~~~~~~~~~~~~~~~~ 88 (371)
.++|+..+.+-..+.++|.++....-....+. .....|++++.+.+++.++-++++..+
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788888888889999998876552211011 112369999999998877766665443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00068 Score=59.43 Aligned_cols=156 Identities=22% Similarity=0.175 Sum_probs=89.7
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----chHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 017485 173 APVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLG-----RKILFLVGGIQMFVSQVIIGSIMAAELGDHGGF 247 (371)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (371)
.|.+.+++|.++.+.. .......+... ..++.|.++|-+. ||+.++++.++..++...++....
T Consensus 13 ~~~l~~~l~ls~~~~~-~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~--------- 81 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQ-RLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA--------- 81 (433)
T ss_pred HHHHHHHcCCCHHHHH-HHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---------
Confidence 4455578999998887 55555444444 4567899999873 455556666555554444444310
Q ss_pred chhhHHHHHHHHHHHHhhhccccccceeeeecccC---chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhh-H
Q 017485 248 SEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIF---PLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFF-F 323 (371)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 323 (371)
...+.....+.+.+...+....-. +.-++..|.. |.+ |+...+.......+|+.++..+.|.+.+..+....+ +
T Consensus 82 ~~~s~~~~~~~l~la~~g~a~~DV-~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 82 SESSAAIAVVLLFLASFGYAFADV-AADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHH-hhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 012222233333333333332222 2223445554 333 677788888888999999999999998887754434 4
Q ss_pred HHHHHHHHHHHHHHhccC
Q 017485 324 FGGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ 341 (371)
.+.+..+..+...+..+|
T Consensus 160 ~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 444444444445555555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.5e-06 Score=73.97 Aligned_cols=145 Identities=10% Similarity=-0.086 Sum_probs=0.9
Q ss_pred hhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh-hhC---C
Q 017485 168 IIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA-ELG---D 243 (371)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~---~ 243 (371)
.+...++.+-+.+++++.+.+ ++.+.+-++.++..++..++.+|..|-+.+-.+.++++++.+++++--+. ... .
T Consensus 21 ~~~~~lttiErRF~l~S~~~G-~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~ 99 (539)
T PF03137_consen 21 YVNSSLTTIERRFGLSSSQSG-LISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE 99 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence 344445666678999999999 99999999999999999999999777788888888888887776643111 000 0
Q ss_pred CC-----------------------------CCchhhHHHHHHHHHHHHhhhccc---cccceeeeecccCchhhhhhhh
Q 017485 244 HG-----------------------------GFSEGYAYLILVLVCVYSAGFSYS---WGPLAWLVPSEIFPLEIRSAGQ 291 (371)
Q Consensus 244 ~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~p~~~r~~~~ 291 (371)
.. .......+..+.++++..+..+.+ ..++..+|+.|..+++..+.-.
T Consensus 100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi 179 (539)
T PF03137_consen 100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI 179 (539)
T ss_dssp ----------------------------------------------------SSS-------------------------
T ss_pred ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence 00 000111111222222222222222 3356678999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017485 292 SITVAVCLVFIFFTAQTFLAML 313 (371)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~ 313 (371)
|+.++...+|..+|-.+.+...
T Consensus 180 Gi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 180 GILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------
T ss_pred hhhhHHhhccHHHHHHHHHHHH
Confidence 8888888888777766655444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.023 Score=50.36 Aligned_cols=183 Identities=14% Similarity=0.157 Sum_probs=98.1
Q ss_pred HHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcc-c-----CCCcchHHHHhhh----HHHHHHHHHhhhcC
Q 017485 19 SVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK-I-----KGGWGWRISLAMA----AAPASILTVGALFM 88 (371)
Q Consensus 19 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-----~~~~~Wr~~f~~~----~~~~~~~~~~~~~~ 88 (371)
.-..+..|.++.+|-.|..+++..+.++|.++++.+...+.+ . .+...|....... .+.+++......++
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~ 243 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYM 243 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999988877776 1 1123576443222 22222222222222
Q ss_pred C----CChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHhh
Q 017485 89 P----ETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVT 164 (371)
Q Consensus 89 ~----esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (371)
. +.|+.. .....+++++.+.++++.++...+.+.+..+.+...++..
T Consensus 244 ~~~vl~~~~~~-----------------------------~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi 294 (491)
T PF03219_consen 244 NKNVLTDPRFY-----------------------------PSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGI 294 (491)
T ss_pred HHHccCccccc-----------------------------hhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 1 111100 0111122333355555555544444445555544444444
Q ss_pred chhhhHhhHHHHHHHhCCCchhHHH---HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 165 GINIIGLYAPVLLRTLKLSESASLL---LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
..+.+-.-.-...++.--++.+... -.....++..++..++++.+.+|+|-+....+.-+.+.++.
T Consensus 295 ~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 295 SINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 4333333333333332223322111 23344555666666888899999998877666544444443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00073 Score=43.22 Aligned_cols=71 Identities=15% Similarity=-0.024 Sum_probs=62.5
Q ss_pred chhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 165 GINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
+-+.+...+|.+.++.+++..+.+ ++.+...++.++|.+...++.++..+++.+..+.+...+....+++.
T Consensus 7 gRFayTplLP~M~~~~~ls~~~ag-~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADGGLSLSQAG-WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHHhHhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677789999999999999999 99999999999999999999999888888888888888888777765
|
Note that many members are hypothetical proteins. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.049 Score=48.01 Aligned_cols=190 Identities=9% Similarity=0.069 Sum_probs=97.3
Q ss_pred HHHHH-HHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-----CCcchH----HHHhhhHHHHHHHHH
Q 017485 14 GFANQ-SVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK-----GGWGWR----ISLAMAAAPASILTV 83 (371)
Q Consensus 14 ~~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~Wr----~~f~~~~~~~~~~~~ 83 (371)
....+ .-..++.|.++.+|-.|..+++..+.++|.++++.+..++.+.. +...|. ..+.+.++.+++...
T Consensus 143 ~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 222 (472)
T TIGR00769 143 SVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIIL 222 (472)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 67888999999999999999999999999999998877766321 112352 333444444444433
Q ss_pred hhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHh
Q 017485 84 GALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQV 163 (371)
Q Consensus 84 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (371)
...++.+.. ..+.+ . .+.+ + .+++++.+.++.+-++...+.+.+..+.+...++.
T Consensus 223 ~~~~l~~~~---~~~~~-~---------------~~~~-----~-~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~ 277 (472)
T TIGR00769 223 LYWWVNRNV---LTDPR-S---------------YNPA-----L-KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYG 277 (472)
T ss_pred HHHHHHhcc---cCCcc-c---------------cchh-----h-ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 333321100 00000 0 0000 0 11112224444444444444444444444444333
Q ss_pred hchhhhHhhHHHHHHHhCCCchhHHH---HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 017485 164 TGINIIGLYAPVLLRTLKLSESASLL---LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 164 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 228 (371)
...+.+-.-.-....+..-++.+... ......++..++..++.+++.+|+|-+....+.-++..+
T Consensus 278 ~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 278 ISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333222222223333233322221 233444555556666668999999988776665555544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0022 Score=58.53 Aligned_cols=194 Identities=12% Similarity=0.018 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
+..+.+..+.+......+......+-+.+++++.+.+ ++...+-++..+...+..+..-|..|-+.+-++.++++++.+
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG-~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSG-LIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcce-eEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 3344444444444333333334444467899999988 888888999999999999999999888888899999988887
Q ss_pred HHHHHHHh--------hh---C--CC--------------------CCCc--hhh---HHHHHHHHHHHHhhhccccccc
Q 017485 232 IIGSIMAA--------EL---G--DH--------------------GGFS--EGY---AYLILVLVCVYSAGFSYSWGPL 273 (371)
Q Consensus 232 ~~~~~~~~--------~~---~--~~--------------------~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
+..+--+. .. . .. ++.. ... .+..+++.-++.+....-..++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 77653111 00 0 00 0000 011 2222222222222222233456
Q ss_pred eeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc------------------c-cchhhHHHHHHHHHHHH
Q 017485 274 AWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF------------------K-AGIFFFFGGWVIVMTTF 334 (371)
Q Consensus 274 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~ 334 (371)
...|+.|-..++....-.|+.+.+..+|.++|-.+.+.....+ | |+.-+++++...+...+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 6688888888888888888888888888888877776655311 2 44555566666666667
Q ss_pred HHHhccCCCCCC
Q 017485 335 MHLFLPETKNVP 346 (371)
Q Consensus 335 ~~~~~~~~~~~~ 346 (371)
.+++.|+...++
T Consensus 338 p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 338 PLFFFPKELPKS 349 (735)
T ss_pred HHHhCcccCccc
Confidence 777777765544
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.037 Score=48.03 Aligned_cols=188 Identities=13% Similarity=0.110 Sum_probs=101.7
Q ss_pred HHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCC-------cchHHHHhhhHHHHHHHHHhhhc----
Q 017485 19 SVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGG-------WGWRISLAMAAAPASILTVGALF---- 87 (371)
Q Consensus 19 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~Wr~~f~~~~~~~~~~~~~~~~---- 87 (371)
.-.....|.++.+|-.|..+.++.+.+++..+++.+..++.+.... ..-+..+.+.+..++++.....+
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~ 247 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRN 247 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456678999999999999999999999999999998777763220 11334455555554555444333
Q ss_pred CCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHHHHhhchh
Q 017485 88 MPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGIN 167 (371)
Q Consensus 88 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (371)
+++.|++...+. .++++++.+..+.+.++...+.+.+..+.+...++..+.+
T Consensus 248 il~~~~f~~~~~----------------------------~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~in 299 (509)
T COG3202 248 VLTDPLFYLRAK----------------------------KKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSIN 299 (509)
T ss_pred cccCcchhHHHh----------------------------cccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 234443321111 1112222344555555544445555555555554443333
Q ss_pred hh-HhhHHHHHHHhCCCchhHHH--HHHHHHHHH-HHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017485 168 II-GLYAPVLLRTLKLSESASLL--LSAVVTGGI-GTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIG 234 (371)
Q Consensus 168 ~~-~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~-~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 234 (371)
.+ ..|-..+-+.+....+...+ ......++. .++....++.+.+|.|-....++.-+.+.++.+++.
T Consensus 300 LvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~lFF 370 (509)
T COG3202 300 LVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLFF 370 (509)
T ss_pred HHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222222223222222221 223334444 555667788888888877766666655555544443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0062 Score=50.61 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=92.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHH-HHhhCCCCcccchhhHHHH-----HHHHHHHHHHHHhhhhcccCCCcchHHHHhhhH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLY-LSEMAPPKHRGAFNIGFQV-----CLAIGVLSANLLNYGTQKIKGGWGWRISLAMAA 75 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~-i~e~~~~~~r~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 75 (371)
|+++|++.|++.+..+.+-.++ +.|+-..+.+....+-... ..++-.+.+.+++-.+.+..+ .|-..+|....
T Consensus 124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~ 202 (354)
T PF05631_consen 124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAI 202 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHH
Confidence 6789999999999999888877 5666432222222222111 122223344444444443322 23467888887
Q ss_pred HHHHHHHHhh-hcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHH
Q 017485 76 APASILTVGA-LFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMA 154 (371)
Q Consensus 76 ~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
+..++..++. ...+|.+.- ..+ ..+.. +..+..++.+.++ ++.+..
T Consensus 203 ~~l~~~~~~I~~~W~ENyg~---~~~-~~~~~--------------------------~~~~~a~~~i~~d---~ril~L 249 (354)
T PF05631_consen 203 VLLAVAAVLILKTWPENYGD---TSS-SSSLS--------------------------GSFREAWRAILSD---PRILLL 249 (354)
T ss_pred HHHHHHHHHHHhcccccCCC---ccc-ccchH--------------------------HHHHHHHHHHHcC---chhHHH
Confidence 7766666553 334554320 000 00000 0001112222221 334444
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKL 213 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 213 (371)
..+..+.....+.....|.|.+- ..+ ....-+ ++.....+..++|+.+..++..+.
T Consensus 250 G~~qslFE~smy~FVflWtPaL~-~~~-~~~P~G-lIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 250 GLIQSLFEGSMYLFVFLWTPALD-PDD-EELPLG-LIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHHHHHHHHheeeeeceec-CCC-CCCCch-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55555555555666667788775 111 122345 788888899999998887665543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=56.36 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=68.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCc---ccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKH---RGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPA 78 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 78 (371)
++++-++.++|.|+.=|....+++|.+++++ |.....++..+.++|..++..+..++.+. .||.+.|.+.++..
T Consensus 36 ~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~---~~~~~~f~i~~~~~ 112 (372)
T PF00854_consen 36 FYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN---YGWFLGFGIPAIGM 112 (372)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC---S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc---cchhhhhhHHHHHH
Confidence 4677888999999999999999999998763 45566778999999999999998887754 56999999999887
Q ss_pred HHHHHhhhc
Q 017485 79 SILTVGALF 87 (371)
Q Consensus 79 ~~~~~~~~~ 87 (371)
++..+.++.
T Consensus 113 ~~~~~~f~~ 121 (372)
T PF00854_consen 113 LLALIVFLS 121 (372)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 776665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0052 Score=53.75 Aligned_cols=116 Identities=7% Similarity=-0.069 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCch-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhcc
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRK-ILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSY 268 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (371)
.....+.++..+|..+..+..- -++| +.+.+..+.=.+...++.+. ........+..-.+.+..++...+++...+.
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lc-n~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLC-NYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHh-cCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 6777888999999886644321 1222 12222222222222221111 1100000000113345555556666655553
Q ss_pred ccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 269 SWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 269 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
.. .....+..+..++++|..+..+....-.+|-.+|..+
T Consensus 389 ~~-s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 389 LG-SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3445667788888888888777777767776666654
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00023 Score=60.31 Aligned_cols=159 Identities=15% Similarity=0.079 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCchHHHHHHH-
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK----LGRKILFLVGG- 223 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~~- 223 (371)
.+.+....+....++ +...=..|.|.+++++|.+....+ ......-+.+++..++.|..+|| +|||+..+...
T Consensus 32 ~~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S-~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s 109 (498)
T KOG0637|consen 32 RKLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSS-IIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS 109 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCccccc-ccccccccccceecccccccccccccccccccchHHHhh
Confidence 334444444444443 444556678888899999998888 67777778888999999999997 68887765544
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCch----hhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhh-hhHHHHHHH
Q 017485 224 IQMFVSQVIIGSIMAAELGDHGGFSE----GYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSA-GQSITVAVC 298 (371)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~ 298 (371)
....++..++.+..-....-.++... ......++...+.-+.......|. -++..|+...+.+.+ +++....+.
T Consensus 110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~ 188 (498)
T KOG0637|consen 110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFM 188 (498)
T ss_pred HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHH
Confidence 44445555555443222221111111 122233333444444444444454 466688877777766 888888888
Q ss_pred HHHHHHHHHHHH
Q 017485 299 LVFIFFTAQTFL 310 (371)
Q Consensus 299 ~~~~~~~~~~~~ 310 (371)
.+|+.++-...+
T Consensus 189 avGnvLGY~~g~ 200 (498)
T KOG0637|consen 189 AVGNVLGYALGS 200 (498)
T ss_pred Hhcceeeeeccc
Confidence 888877765544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.013 Score=53.95 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=64.0
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhCCCCc---ccchhhHHHHHHHHHHHHHHHHhhhhcccC----CCcchHHHHhhhH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMAPPKH---RGAFNIGFQVCLAIGVLSANLLNYGTQKIK----GGWGWRISLAMAA 75 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~Wr~~f~~~~ 75 (371)
+++=.+..+|.|+.-|...+...|.+++++ |-....++..+.++|..+++.+..++.+.. ...+|...|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 345567778889999999999999997653 556777788888899999988877776332 1346999999999
Q ss_pred HHHHHHHHhhh
Q 017485 76 APASILTVGAL 86 (371)
Q Consensus 76 ~~~~~~~~~~~ 86 (371)
+..++..+.+.
T Consensus 169 i~m~ia~lvf~ 179 (654)
T TIGR00926 169 ILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHH
Confidence 88777766543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=97.29 E-value=4.2e-05 Score=63.65 Aligned_cols=118 Identities=8% Similarity=-0.083 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccc
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYS 269 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (371)
.....+.++..+|..+..+..-+..+++.+.+..+.=.+...++...-........+..-.+.+..++...++++..+..
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34667889999999988765322113333333222222221111111000000000001123444455555555555533
Q ss_pred cccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 270 WGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 270 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
......+..+..++++|..+..+....-.+|-.+|..+
T Consensus 266 -~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 -STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --HHHH---------------------------------
T ss_pred -hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888777666666555555555443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.039 Score=48.04 Aligned_cols=164 Identities=9% Similarity=-0.055 Sum_probs=83.1
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHHhC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRTLK-LSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVII 233 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 233 (371)
+.+..+....+--...+..|.++.+.. .+--... .....-.+..++.++..|...||..|.+....+.+..-++....
T Consensus 7 Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~s-iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s 85 (432)
T PF06963_consen 7 LYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVS-IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS 85 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence 333444444444555556666665542 2333344 56667777888888899999999999988776655543333322
Q ss_pred HHHHHhhhCCCCCC--chhhHHHHHHHHHHHHhhhccccccceee----eecccC--chhhhhhhhHHHHHHHHHHHHHH
Q 017485 234 GSIMAAELGDHGGF--SEGYAYLILVLVCVYSAGFSYSWGPLAWL----VPSEIF--PLEIRSAGQSITVAVCLVFIFFT 305 (371)
Q Consensus 234 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~--p~~~r~~~~~~~~~~~~~~~~~~ 305 (371)
.............. +.......+....+.+............. ++..+. +++.....++...-+-.+...++
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~cklla 165 (432)
T PF06963_consen 86 CALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLA 165 (432)
T ss_pred HHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 22211111111100 01112222222222222111111111111 111122 33444555555555666789999
Q ss_pred HHHHHHHHhhcccc
Q 017485 306 AQTFLAMLCHFKAG 319 (371)
Q Consensus 306 ~~~~~~~~~~~~~~ 319 (371)
|.+.|.+.+..+..
T Consensus 166 Pl~vG~l~t~~s~~ 179 (432)
T PF06963_consen 166 PLFVGLLMTFASPV 179 (432)
T ss_pred HHHHHHHhhccCHH
Confidence 99999998877643
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.064 Score=42.73 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=69.9
Q ss_pred HHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCch--HHHHHHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRK--ILFLVGGIQMFVSQV 231 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~ 231 (371)
-.+....-...+.....|.|.+- ++-+. .-+ ++...+.+..++|+-+..++..|-..| ..+.+......+...
T Consensus 254 G~iqsLFE~smytFVFLWTPaLspn~e~i---PhG-fiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~ 329 (454)
T KOG4332|consen 254 GAIQSLFEGSMYTFVFLWTPALSPNDEEI---PHG-FIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALL 329 (454)
T ss_pred HHHHHHHhhhhheeeeeecccCCCCcccC---Cch-hHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHH
Confidence 34444444444455556677653 11111 123 666777778888887777776654333 334444444333333
Q ss_pred HHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHH
Q 017485 232 IIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSIT 294 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 294 (371)
+...... . + +...+....++..+++-.+.+..+..+. -+-....|.+.|++.+.+.
T Consensus 330 Lpilt~~-v---s--P~kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 330 LPILTSS-V---S--PSKESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred HHHHHhc-c---C--CCcCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhhe
Confidence 2222211 1 1 1123344457777778788887776554 4447788999998766554
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.014 Score=48.63 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=82.9
Q ss_pred hhhHhhHHHHHHHhCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 017485 167 NIIGLYAPVLLRTLKLSES--ASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDH 244 (371)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (371)
.......+.+..+.+.+.. ..+ .......+...++.++.|.+.||+|||+.+..+......+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------- 90 (338)
T COG0477 19 GLLSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP------- 90 (338)
T ss_pred chHHHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc-------
Confidence 3344455666666655553 455 677778888888889999999999999777766655333322222221
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCch-hhhhhhhHHHHH-HHHHHHHHHHHHHHHHHhh
Q 017485 245 GGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL-EIRSAGQSITVA-VCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 315 (371)
....+.........+.+.+ ...+....+..|..|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 91 ----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 91 ----NVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred ----cchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112333333333333333 3345556777888887 678888888777 4666777777666555544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.22 Score=42.62 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
..+.+.+.........+.+..-.+++.+.+-.+.. +. .....+.+...+..++...+--+...|....++..+.....
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~-~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~i 96 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SK-NFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAI 96 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555667777777777766544444 22 33344444444444444444333332222222222222222
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
+.......... +++..........++...+.+.+.+..-+.+ +... ..+|++.-...++= +....+...+...+..
T Consensus 97 l~i~~l~~~~v-~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~-~G~a-~~~P~~ytqavm~G-~a~aG~l~Sl~~i~tk 172 (406)
T KOG1479|consen 97 LFIVTLDLALV-KTDTWTNGFFLVTLIIVVLLNLANAVVQGSL-YGLA-GLFPSEYTQAVMSG-QALAGTLTSLLRILTK 172 (406)
T ss_pred HHHHHHHHHhh-ccCCccchhHHHHHHHHHHHhhhhhhhccch-hhhh-hcCCHHHHHHHHhc-chhHhHHHHHHHHHHH
Confidence 22111111110 1111122334444444455555544443333 4553 44577654332221 1222222222222223
Q ss_pred HHHhhc--ccchhhHHHHHHHHHHHHHHHhccC
Q 017485 311 AMLCHF--KAGIFFFFGGWVIVMTTFMHLFLPE 341 (371)
Q Consensus 311 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (371)
...+.. +...++....+..+++++++...|+
T Consensus 173 a~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 173 AAFSDSRTSALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred HhcCCCCceeehhHHHHHHHHHHHHHHHHHhhc
Confidence 332222 2345666666666667777665554
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0016 Score=56.66 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=58.5
Q ss_pred HHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVII 233 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 233 (371)
+.....+..+...++.+..++|+++.+.+ .+...--+..+++.+++|.++||+.+|+.++++..+..+...+.
T Consensus 21 ~~~~~~~g~l~pll~vy~kQLGl~p~~~G-tl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fl 93 (618)
T KOG3762|consen 21 LFFGARFGSLFPLLAVYFKQLGLNPAVVG-TLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFL 93 (618)
T ss_pred eeeeecccccchHHHHHHHHcCCCHHHhh-hhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 33345566777888999999999999999 77888889999999999999999988888777766665554433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0043 Score=52.94 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=41.4
Q ss_pred HHHhhhhHHHHHHHHHHHHhhCCCCcccc-hhhHHHHHHHHHHHHHHHHhhhh
Q 017485 7 VLLGIGIGFANQSVPLYLSEMAPPKHRGA-FNIGFQVCLAIGVLSANLLNYGT 58 (371)
Q Consensus 7 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~ 58 (371)
-+.=++.-.....+-+++.|....+++.+ +++++....++|..+|..++.+.
T Consensus 150 ~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 150 WLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 34445556777888999999998777766 99999999999999998887643
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0055 Score=51.02 Aligned_cols=79 Identities=29% Similarity=0.312 Sum_probs=63.7
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCC-CcccchhhHHHH-HHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPP-KHRGAFNIGFQV-CLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 79 (371)
+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... ...+||+.|.+......
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 46789999999999999999999999998 678998888888 5888888888777766654 44579997776666554
Q ss_pred HH
Q 017485 80 IL 81 (371)
Q Consensus 80 ~~ 81 (371)
..
T Consensus 176 ~~ 177 (338)
T COG0477 176 LL 177 (338)
T ss_pred HH
Confidence 43
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.044 Score=46.68 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCch-hhHHHHHHHHHHHHhhhcc
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSE-GYAYLILVLVCVYSAGFSY 268 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 268 (371)
...++..+...+-.++.|.++|+.|+||.....+....+......... ++ .+.+..+.+..+...++..
T Consensus 62 y~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i----------~~~s~~~~~l~~~il~~i~~~~ 131 (438)
T COG2270 62 YASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI----------PPGSYLLLLLLFLILASIGFEF 131 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHHhcch
Confidence 556666777777788899999999987776655544444433333322 22 3455555555555555554
Q ss_pred ccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 269 SWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 269 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
.. ....++..+..+++.-++..++....+++|+.+.-..
T Consensus 132 s~-Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~ 170 (438)
T COG2270 132 SN-VFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIF 170 (438)
T ss_pred hh-eehhhHhhhhcCccccCcccccccccccccchHHHHH
Confidence 33 3444677888888888888888888888887665443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.17 Score=44.97 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCc----------hhh--------HHHHHHHH
Q 017485 198 IGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFS----------EGY--------AYLILVLV 259 (371)
Q Consensus 198 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--------~~~~~~~~ 259 (371)
..++...+-.+++|+++|++++.+..........++++..+....--++.. ..- .|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 445556678899999999999887777777776666665432111101000 000 11111111
Q ss_pred HHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 260 CVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
+..-.-.....+-+.|.+.+|..+.++..+-.++....++++..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222223457888999999999999999999999999999988877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.076 Score=46.35 Aligned_cols=39 Identities=10% Similarity=-0.073 Sum_probs=31.3
Q ss_pred eeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 276 LVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 276 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
+.-+.+..|..-|+-|.+.|...++|+-.-..+.-++.|
T Consensus 428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 455677788999999999999999998777666666654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.028 Score=44.92 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=57.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTV 83 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 83 (371)
+..++.|.+.+.....+.....+.|| ++||++.++.-...+++..+-..+...+-+.. .-+..++....+.++..+
T Consensus 101 ~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~---~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 101 LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD---PSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHHH
Confidence 44567777766666777777789997 68999999999999998887776654444332 245555555555655555
Q ss_pred hhhcCCCCh
Q 017485 84 GALFMPETP 92 (371)
Q Consensus 84 ~~~~~~esp 92 (371)
..+++++.|
T Consensus 177 ~~~~vr~~~ 185 (250)
T PF06813_consen 177 AMFFVRPVP 185 (250)
T ss_pred HhhheeccC
Confidence 555654443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.011 Score=49.47 Aligned_cols=63 Identities=17% Similarity=0.057 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 251 YAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
+....++..++.+.+.+..- +....+++++.|++.+++.+++...+..+|..++|.+.+.+..
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq-~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~ 71 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQ-VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL 71 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHH-hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555566666655443 3445777888898899999999999999999999999998773
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.21 Score=43.82 Aligned_cols=110 Identities=13% Similarity=0.032 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHh
Q 017485 185 SASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSA 264 (371)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (371)
..+++....+......+.+++++.+.|+.+.|..+.++..+..+....+.. .+.+..+..-.+.++
T Consensus 49 ~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--------------~N~y~~yfssallG~ 114 (461)
T KOG3098|consen 49 AYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--------------PNSYYLYFSSALLGF 114 (461)
T ss_pred CCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--------------cchHHHHHHHHHhhh
Confidence 345556678888889999999999999999999999998887766555544 446777788888888
Q ss_pred hhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017485 265 GFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTF 309 (371)
Q Consensus 265 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
+.+..|..- ..|.+|..+++.+.+..++..++...+.++|..+.
T Consensus 115 Gaallw~Gq-G~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 115 GAALLWTGQ-GGYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHheeccc-ceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 888766544 47888999999999999998888887777775543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1 Score=41.13 Aligned_cols=173 Identities=11% Similarity=-0.001 Sum_probs=97.7
Q ss_pred HHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDK-LGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
-.+...+++++..-+-.|+ ..++.+...+. -.............+++++++|. +||-+.+.++.++..++..++...
T Consensus 46 e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa-~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~ 124 (571)
T KOG1237|consen 46 EVLERLAFFGLVSNLVTYLTLELHASGGGAA-NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLS 124 (571)
T ss_pred HHHHHHhHhcchhHHHHHHHHHhccchHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444 66777776665 55566666777788899999996 588899999888888886666555
Q ss_pred HHhhhCCC-------C--CCch-hhHHHHHHHHHHHHhh-hccccccceeeeecccCch----hhhh--hhhHHHHHHHH
Q 017485 237 MAAELGDH-------G--GFSE-GYAYLILVLVCVYSAG-FSYSWGPLAWLVPSEIFPL----EIRS--AGQSITVAVCL 299 (371)
Q Consensus 237 ~~~~~~~~-------~--~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~----~~r~--~~~~~~~~~~~ 299 (371)
........ + ..+. ......++...+.... ...+.-|....+-+|-++. +.+. .-+...+...+
T Consensus 125 a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~ 204 (571)
T KOG1237|consen 125 AMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQN 204 (571)
T ss_pred HHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHH
Confidence 43322110 0 0011 1111122222222222 2234455556777787772 2223 44555666677
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 017485 300 VFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMT 332 (371)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (371)
.|..++..+..+..++.+|..-+.....+.+.+
T Consensus 205 ~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~la 237 (571)
T KOG1237|consen 205 GGALLAQTVLVYIQDNVGWKLGFGIPTVLNALA 237 (571)
T ss_pred HHHHHHHHHHHhhhhcccceeeccHHHHHHHHH
Confidence 888888777777767777654444433333333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.67 Score=40.66 Aligned_cols=118 Identities=12% Similarity=-0.020 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC-----------chh--------hHHHHHHH
Q 017485 198 IGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGF-----------SEG--------YAYLILVL 258 (371)
Q Consensus 198 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--------~~~~~~~~ 258 (371)
+.++..++-.++.+++.+++++.+.........+++++..+......+++ +.. +.|...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 56777788899999999999988887777777777777654211111111 000 01222222
Q ss_pred HHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 259 VCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
..+.-.-.+...+-+.+....|+...++..+-.++.+...+++..++..+..++..+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222223334566778998889999999999999999999998888877663
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.072 Score=45.66 Aligned_cols=107 Identities=9% Similarity=0.023 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhcccc
Q 017485 191 SAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSW 270 (371)
Q Consensus 191 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (371)
....-.+-.++..+++.++.+|..-+.-......+..++++..++. ++.+.-++...+.....+.+
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-------------~~v~~~l~Gv~las~ssg~G- 129 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-------------PSVWVRLLGVVLASLSSGLG- 129 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-------------cchhHHHHHHHHHhhhhhhh-
Confidence 4455556677777888999998875555555555666666655543 23444455555554444433
Q ss_pred ccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017485 271 GPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFK 317 (371)
Q Consensus 271 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
-+...-.+..+|+. +.+-....-..++.+++.....+.+ .+
T Consensus 130 -E~tfL~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g 170 (402)
T PF02487_consen 130 -EVTFLSLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LG 170 (402)
T ss_pred -HHHHHHHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hC
Confidence 23222224555542 2222233333455556655544444 44
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.34 Score=41.47 Aligned_cols=110 Identities=8% Similarity=-0.033 Sum_probs=53.3
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhcc
Q 017485 190 LSAVV-TGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSY 268 (371)
Q Consensus 190 ~~~~~-~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (371)
+.... +.+...+|.+.+.++-++- ||.+.+. .++=....-++...-+. +.+.-..+.+..+....+++...+.
T Consensus 286 ~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~-v~lR~lfiPlF~~cn~~----~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 286 LLVFLSFNVFDLIGSILAALLTWPD-PRKLTIP-VLLRLLFIPLFLLCNYP----PLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred HHHHHHhHHHHHhhhhhhhcccCCC-CceehHH-HHHHHHHHHHHHHhccC----CCCceecCchHHHHHHHHHHhccch
Confidence 33444 7788888866665554443 3333222 22211111111111000 0011123455556666666665553
Q ss_pred ccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHH
Q 017485 269 SWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 269 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
...+...+..+.+|++++..+-.+....-..|-..|.
T Consensus 360 -ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 360 -LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGS 396 (406)
T ss_pred -HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456667888888888877665554444444444433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.035 Score=44.62 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=64.9
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhh-HHHHHHHH
Q 017485 4 FGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMA-AAPASILT 82 (371)
Q Consensus 4 ~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~-~~~~~~~~ 82 (371)
.+..+.|++.+.........++-..|+++.|++.+..++..++|..+.+++++.+.+..+++.|--.|++. +.+++...
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~sv 436 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSV 436 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 35667888877666667777888899999999999999999999999999999998877666676665544 44455544
Q ss_pred HhhhcC
Q 017485 83 VGALFM 88 (371)
Q Consensus 83 ~~~~~~ 88 (371)
.+.+.+
T Consensus 437 gil~~~ 442 (459)
T KOG4686|consen 437 GILFYL 442 (459)
T ss_pred HHHhhe
Confidence 444444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.039 Score=47.63 Aligned_cols=119 Identities=10% Similarity=-0.039 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchh---hhhhhhHH
Q 017485 217 ILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLE---IRSAGQSI 293 (371)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~ 293 (371)
+.+.++.++..++.+++......... ..........+.+.+...+.+. .-|....+.+|.++++ .|......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~----~~~~~~~~~~~gL~lia~G~G~-~K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL----PSGIQLGLFYIGLALIAVGTGG-IKPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC----------CHHHHHHHHHHHHHHC-CHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh----hhhHHHHHHHHHHHHHHhcccc-ccccHHHHHHHHhcccchhhhhhhHHH
Confidence 45677778888887775554321110 0111223445555555555553 3344456668888765 45667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhcc
Q 017485 294 TVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLP 340 (371)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
.+...++|+.++....+++.++.+|...+.++.+..+++++.+...+
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999988888877777777766655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.5 Score=39.77 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh-hcc-cchhhHHHHHHHHHH
Q 017485 287 RSAGQSITVAVCLVFIFFTAQTFLAMLC-HFK-AGIFFFFGGWVIVMT 332 (371)
Q Consensus 287 r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 332 (371)
-+...|-.+....+|+.+|+.+.+.+.- ..| ....++.+.+..+++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3556677788888999999888877654 445 234444444444444
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.0091 Score=47.31 Aligned_cols=57 Identities=23% Similarity=0.159 Sum_probs=39.2
Q ss_pred hHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 172 YAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
|.-++.+++|+...+.+ .+........++...+.|-++||.|||+.-+.-++...++
T Consensus 59 YvYyLYstYgFgkG~Ig-qLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs 115 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS 115 (454)
T ss_pred eeeeeehhcCccCCccc-eeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH
Confidence 33344577888888887 5555555666677778889999999998765544444433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.87 Score=38.67 Aligned_cols=41 Identities=7% Similarity=-0.116 Sum_probs=34.2
Q ss_pred eeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 275 WLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 275 ~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
.+..+.+.+|...|+-+.+.|...++|+-.-..+..++.|.
T Consensus 391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ 431 (510)
T KOG3574|consen 391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADG 431 (510)
T ss_pred HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence 35557888999999999999999999988877777777764
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.5 Score=34.64 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 017485 198 IGTVLTIISMILVDKLGRKILFLVGGIQMFVSQV 231 (371)
Q Consensus 198 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 231 (371)
+..++.+-+-.++.|+.-|++.+++.+++.+..+
T Consensus 252 CT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl 285 (294)
T KOG2881|consen 252 CTGLAVIGGKYLASKISVRTVTLIGGILFIIFGL 285 (294)
T ss_pred HHHHHHhhhHHHhhhheeEEEEEecchhHHHHHH
Confidence 3344444455678889888888888777665533
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.078 Score=38.93 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=51.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhc
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQ 59 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 59 (371)
++.+-.+.|++.+..++....++.+..++++|++..+++-.....+.++|.++...+.
T Consensus 92 l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 92 LYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999998899999988766553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.8 Score=41.83 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=58.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCC---CCc-c--cchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAP---PKH-R--GAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAA 75 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~---~~~-r--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 75 (371)
|..+.-+..+|.|+.-|...++-+|-++ +++ + ...+.++....++|..++..+--++.+. .+|.+.|.+..
T Consensus 155 ~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~---~~w~lgf~i~~ 231 (571)
T KOG1237|consen 155 LYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN---VGWKLGFGIPT 231 (571)
T ss_pred HHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc---ccceeeccHHH
Confidence 3445566778888989999999999998 322 2 3567778888888888888776655543 46999998888
Q ss_pred HHHHHHHHhh
Q 017485 76 APASILTVGA 85 (371)
Q Consensus 76 ~~~~~~~~~~ 85 (371)
....+..+++
T Consensus 232 ~~~~lai~iF 241 (571)
T KOG1237|consen 232 VLNALAILIF 241 (571)
T ss_pred HHHHHHHHHH
Confidence 7766655543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.66 Score=39.35 Aligned_cols=67 Identities=21% Similarity=0.359 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCchHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVD-----KLGRKILFLVG 222 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~~ 222 (371)
+..+...+..+..-..... ..|.+++..|.|-...+ .....+. -.---+++..+.| |+||||..++-
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a-~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQA-IFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhh-hhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeee
Confidence 4445555666655544444 88999887777665555 2222211 1112356777777 99999876543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.51 Score=41.50 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=34.2
Q ss_pred HHHHHHHHhhchhhhHhhHHHHHHH--hCCCchhHHH--HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLLRT--LKLSESASLL--LSAVVTGGIGTVLTIISMILVDKLGRKILFLVG 222 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 222 (371)
+.+.++.+..-........|.++++ .+.+-.+.+. +..-++.+=-+=+.++=...+.|+||||..++-
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence 3444555554433333467888876 5555554441 112223322222333334445578999876654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.55 E-value=3.3 Score=35.23 Aligned_cols=58 Identities=17% Similarity=0.042 Sum_probs=35.8
Q ss_pred HhhHHHHHHHhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 017485 170 GLYAPVLLRTLKL-SESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 170 ~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 228 (371)
.+....++.+++- +..... ....+-....++...+.|...|+..|+|++.....+--+
T Consensus 47 ~F~VsL~M~~L~gnsl~lvA-vyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNl 105 (503)
T KOG2601|consen 47 EFSVSLFMILLGGNSLLLVA-VYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNL 105 (503)
T ss_pred HHHHHHHHHHHcCceehhHH-HHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccH
Confidence 3333444444443 333333 555566666777777888999999999987666554333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.52 E-value=2.2 Score=37.71 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCchHHHHHHHH
Q 017485 193 VVTGGIGTVLTIISMILVDKLGRKILFLVGGI 224 (371)
Q Consensus 193 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 224 (371)
....+..++..+....+..|+..|.-+..+.+
T Consensus 52 ~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 52 LASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 34445555555566666677665444444433
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.38 E-value=1 Score=29.92 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=35.0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Q 017485 283 PLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIV 330 (371)
Q Consensus 283 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (371)
.++.++.+.++-...-.+++.+.....|++.+++-...+|...++.++
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 346778888888888889999999999999998865444444444433
|
|
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=85.65 E-value=25 Score=32.12 Aligned_cols=76 Identities=9% Similarity=0.103 Sum_probs=34.8
Q ss_pred cchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCc-hhHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 017485 136 NHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSE-SASL---LLSAVVTGGIGTVLTIISMILVD 211 (371)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~---~~~~~~~~~~~~~~~~~~g~l~d 211 (371)
|.-..|.||.+. ++.++...+....|....... ..++...|.-. ...+ ......+.+.+.+++..++++-.
T Consensus 248 KlvhgDVFR~P~-~~~lls~lvG~G~Qll~~~~~----~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk 322 (521)
T PF02990_consen 248 KLVHGDVFRPPK-HPMLLSALVGTGIQLLFMALV----TLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYK 322 (521)
T ss_pred hhhhHHHhcCcC-CchHHHhHhcchhhhhHHHHH----HHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334456776555 444554555555444322222 22223333222 2112 13344455556666666666666
Q ss_pred hhCch
Q 017485 212 KLGRK 216 (371)
Q Consensus 212 ~~grr 216 (371)
.++.+
T Consensus 323 ~~~g~ 327 (521)
T PF02990_consen 323 SFGGK 327 (521)
T ss_pred HcCCC
Confidence 66543
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
| >PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) | Back alignment and domain information |
|---|
Probab=85.33 E-value=0.24 Score=39.20 Aligned_cols=16 Identities=6% Similarity=0.538 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCC
Q 017485 329 IVMTTFMHLFLPETKN 344 (371)
Q Consensus 329 ~~~~~~~~~~~~~~~~ 344 (371)
...+++++.++.+++.
T Consensus 175 LFlaiLIWlY~H~~~~ 190 (381)
T PF05297_consen 175 LFLAILIWLYVHDQRH 190 (381)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHhcCCCC
Confidence 3445556666666553
|
LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B. |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.38 E-value=7.6 Score=26.04 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhh-CchHHHHHHHHHHHHH
Q 017485 197 GIGTVLTIISMILVDKL-GRKILFLVGGIQMFVS 229 (371)
Q Consensus 197 ~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~ 229 (371)
+++++.....||+.||+ |.++..++.+++...+
T Consensus 53 IsGilVGa~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 33444455678899986 6666655554444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 371 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-29 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.92 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.9 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.82 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.65 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.64 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.56 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.55 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.54 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.47 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.04 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=294.61 Aligned_cols=346 Identities=27% Similarity=0.503 Sum_probs=266.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-----CCcchHHHHhhhHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK-----GGWGWRISLAMAAA 76 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~Wr~~f~~~~~ 76 (371)
|+++|+++|++.|+..+.+..+++|++|+++|++..++.+.+..+|.++++.++....... +.++||+.+.+..+
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence 5789999999999999999999999999999999999999999999999999887665432 23579999999999
Q ss_pred HHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 77 PASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 77 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
+.++..+..+++||||+|+..|++ .+++++.+++.++.+..+++..+..+....+++.. .... ....++......
T Consensus 209 ~~~~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~ 283 (491)
T 4gc0_A 209 PALLFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG---GRLL-MFGVGVIVIGVM 283 (491)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---THHH-HSCCTHHHHHHH
T ss_pred hhhhhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh---hHHH-HhcccHHHHHHH
Confidence 999988889999999999999999 88888888877665544443333322222111111 1111 122344555666
Q ss_pred HHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
...+.+..+.+.+..|.|.+.+..+.+..... .......+..+++.++++++.||+|||+.++.+...+.++.+.++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 67777788888899999999999888887777 77788889999999999999999999999999888888877766654
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
.. .....+..+....++..+++.++.++.+.+.+|++|++.|+++.|+.++.+++++++++.+.+.+.+..
T Consensus 363 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~ 433 (491)
T 4gc0_A 363 FY---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS 433 (491)
T ss_dssp HH---------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH
T ss_pred Hh---------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 112234445555566666667777888899999999999999999999999999999998887664432
Q ss_pred ------c-cchhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhcCccccc
Q 017485 317 ------K-AGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFWKK 362 (371)
Q Consensus 317 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (371)
+ ...++++++++++..++.++++||||+|++||+++.++++.++++
T Consensus 434 ~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 434 WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence 2 335566777777777888899999999999999988876655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-30 Score=225.99 Aligned_cols=304 Identities=15% Similarity=0.043 Sum_probs=211.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcc-hHHHHhhhHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWG-WRISLAMAAAPASI 80 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-Wr~~f~~~~~~~~~ 80 (371)
++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+. .| ||+.|++.+++.++
T Consensus 122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~ 198 (451)
T 1pw4_A 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAIL 198 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999876542 45 99999999988877
Q ss_pred HHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhh-hhccchhHHHHHHHHH
Q 017485 81 LTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKI-IQRKYRPQLVMAILIP 158 (371)
Q Consensus 81 ~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 158 (371)
..+. ++++||+|+....+++ ++. ..+.+.+.+ . +++++.+.++. .+...+++.++...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (451)
T 1pw4_A 199 VALFAFAMMRDTPQSCGLPPI--EEY---------KNDYPDDYN----E---KAEQELTAKQIFMQYVLPNKLLWYIAIA 260 (451)
T ss_dssp HHHHHHHHCCCSSTTTCCCSC--TTT---------CCC--------------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhhccCCHhhcCCCCh--hhh---------cccccccch----h---hhhcccccccchHHHHHcCHHHHHHHHH
Confidence 6655 5678998864221111 000 000000000 0 00011112222 1223334455556666
Q ss_pred HHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CchHHHHHHHHHHH-HHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKL--GRKILFLVGGIQMF-VSQVIIG 234 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~ 234 (371)
.+......+.+..+.|.++++ +|.+..+.+ .......++.+++.++.+++.||+ +||+.+..+..+.. ++.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 666666777888899999876 899998888 888888999999999999999999 99998877766555 3333222
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV-FIFFTAQTFLAML 313 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~ 313 (371)
.. +..+.+.......+.+.+.+.. .+....+..|.+|++.|+++.|+.+....+ +..++|.+.+.+.
T Consensus 340 ~~-----------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 340 MN-----------PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp SC-----------CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-----------cccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1123344444444454444432 334456778999999999999999999999 9999999999999
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHhc
Q 017485 314 CHFKAGIFFFFGGWVIVMTTFMHLFL 339 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (371)
+..++...+...+++.+.+.+..++.
T Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 408 DFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 98887655555555444444444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=199.54 Aligned_cols=281 Identities=9% Similarity=0.026 Sum_probs=199.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhc-ccCCC----------------
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQ-KIKGG---------------- 64 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~---------------- 64 (371)
++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +..+.
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 199 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSA 199 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhh
Confidence 5789999999999999999999999999999999999999999999999999998887 43321
Q ss_pred c------chHHHHhhhHHHHHHHHHhhh--cCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhccccccc
Q 017485 65 W------GWRISLAMAAAPASILTVGAL--FMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTIN 136 (371)
Q Consensus 65 ~------~Wr~~f~~~~~~~~~~~~~~~--~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (371)
+ +||+.|++.+++.++..+..+ ..||+++. +++ . +++++.+
T Consensus 200 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~-~---------------------------~~~~~~~ 248 (438)
T 3o7q_A 200 YKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-D---------------------------AKQGSFS 248 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC-C---------------------------SSTTSHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc-c---------------------------ccccchh
Confidence 0 199999888877666555433 35666531 001 0 0011112
Q ss_pred chhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHH-HHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 017485 137 HPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVL-LRTL-KLSESASLLLSAVVTGGIGTVLTIISMILVDKLG 214 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 214 (371)
.++++.++++. ++...+..+........+..+.|.+ +++. |.+..+.+ .......++.+++.++.++++||++
T Consensus 249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~ 323 (438)
T 3o7q_A 249 ASLSRLARIRH----WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_dssp HHHHHHTTCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHhChH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444332 3444444455555667777889998 7664 99999888 8888889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHH
Q 017485 215 RKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSIT 294 (371)
Q Consensus 215 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 294 (371)
||+.+..+.++..++.+.+... ++.+ ......+.+++.+.. .+..+.+..|.+|++ ++.+.++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ 387 (438)
T 3o7q_A 324 PHKVLAAYALIAMALCLISAFA-------------GGHV-GLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------------CHHH-HHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHc-------------CCcH-HHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHH
Confidence 9999988887776665554442 1122 233334444554433 355567767888876 88888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHH
Q 017485 295 VAVCLVFIFFTAQTFLAMLCHFK-AGIFFFFGGWVIVMTTFM 335 (371)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 335 (371)
. .+.+++.++|.+.+.+.+..+ +...+.+.+++.+...+.
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 6 677999999999999999988 665555554444443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=186.49 Aligned_cols=330 Identities=15% Similarity=0.080 Sum_probs=189.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCc--ccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKH--RGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 79 (371)
++++|+++|++.+...+...+++.|++|+++ |+...++++.+.++|..++|.+++.+.+. .|||+.|++.++..+
T Consensus 111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMF 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Confidence 5689999999999999999999999999988 77788889999999999999999988764 459999999877766
Q ss_pred HHHHhhhcC-CCChhh---HHhhCCChHHHHHHHHH----------------HhCccchHHHHHH--HH-------HHhc
Q 017485 80 ILTVGALFM-PETPNS---IIQRSNDPQKAKRMLQR----------------VRGTADVEAELND--LI-------RASS 130 (371)
Q Consensus 80 ~~~~~~~~~-~esp~~---~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--~~-------~~~~ 130 (371)
+..+..++. |+..+. ...+..+.++.++..+. ..+..+.+..... .. ....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (491)
T 4aps_A 188 IGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAW 267 (491)
T ss_dssp HHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHH
Confidence 655543322 211000 00011112333332222 0011100000000 00 0000
Q ss_pred ccccccchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 017485 131 ISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMIL 209 (371)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l 209 (371)
..++.+.+ .. .+.+....+...+..+.....+.....+.|.+.++ .+.+....+ .......+..+++.++.+++
T Consensus 268 ~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 342 (491)
T 4aps_A 268 MISSVKVT--ST--EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPLFIMLYTPFFAWL 342 (491)
T ss_dssp HC----------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHHHHHHHHHHHHHH
T ss_pred Hhhccccc--HH--HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchHHHHHHHHHHHHH
Confidence 00000000 00 01111112222323333334445566677777755 566645555 66677788888999999999
Q ss_pred HhhhCchHHHH-----HHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCch
Q 017485 210 VDKLGRKILFL-----VGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL 284 (371)
Q Consensus 210 ~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 284 (371)
.||++||+... .+..+..++...+....... .. ....+.+.......+.+.+.+.. .+....+..|.+|+
T Consensus 343 ~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~ 417 (491)
T 4aps_A 343 WTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPK 417 (491)
T ss_dssp HHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTT
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCH
Confidence 99999987654 55555555544443321110 00 01123344444455555554433 34556788999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccCCCC
Q 017485 285 EIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 285 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
+.|+++.|+.+....++..+++.+.+.+.+......+...+++..+..++.+++.++.++
T Consensus 418 ~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 418 AFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp TCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887766544455555555555555555555555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-24 Score=184.42 Aligned_cols=269 Identities=14% Similarity=0.116 Sum_probs=189.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.+++.++.
T Consensus 91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 91 LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999888763 46999999999888777
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .+++||+|+. +++ +++.+.++++.+++ +.++...+..+
T Consensus 168 ~~~~~~~~~~~~~~---~~~-------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~ 209 (375)
T 2gfp_A 168 TFSMARWMPETRPV---DAP-------------------------------RTRLLTSYKTLFGN----SGFNCYLLMLI 209 (375)
T ss_dssp HCCCCCSSCCCSTT---TCC-------------------------------CCCTTTCSTHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHCcccCCC---Ccc-------------------------------cccHHHHHHHHhcC----cchHHHHHHHH
Confidence 764 5668887642 111 01112334444433 23444444445
Q ss_pred HHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH-HHHHHHHHHHHHH
Q 017485 161 QQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQ-MFVSQVIIGSIMA 238 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~ 238 (371)
........+..+.|.++++ +|.+..+.+ .......++.+++.++.+++.||.+++ ...+... ...+...+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 210 GGLAGIAAFEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHCSCSSHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 5555666777788888755 888888888 788888899999999999999998873 2222222 2222111111100
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKA 318 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
...+.+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+....++..++|.+.+.+.+..++
T Consensus 287 ---------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 355 (375)
T 2gfp_A 287 ---------GVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG 355 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred ---------ccccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 0123344444455555555543 3455677789988 8999999999999999999999999988876665
Q ss_pred chhhHHH
Q 017485 319 GIFFFFG 325 (371)
Q Consensus 319 ~~~~~~~ 325 (371)
...+...
T Consensus 356 ~~~~~~~ 362 (375)
T 2gfp_A 356 SLGLLMT 362 (375)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=169.17 Aligned_cols=295 Identities=9% Similarity=0.029 Sum_probs=168.0
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhCCC--CcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMAPP--KHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+.+|++.|++.+..++.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.+++.++
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALI 179 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHH
Confidence 3456666666555554444444444433 456777777777788888999988887764 3599999988877665
Q ss_pred HHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 81 LTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 81 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
..+..++.||+|+. +.+ .++ .. +.+.++....++++.++++ .++...+..+
T Consensus 180 ~~~~~~~~~~~~~~---~~~-~~~----------~~-----------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 230 (417)
T 2cfq_A 180 LAVLLFFAKTDAPS---SAT-VAN----------AV-----------GANHSAFSLKLALELFRQP----KLWFLSLYVI 230 (417)
T ss_dssp HHHHSCSSCCCCSC---SSC-SSS----------SS-----------SSCCCCCCHHHHHHHTTCH----HHHHHHHHHH
T ss_pred HHHHHHHcCccccc---ccc-ccc----------cc-----------ccccccccHHHHHHHhcCC----chhhHHHHHH
Confidence 55555554443310 001 000 00 0000000111223333322 2222222222
Q ss_pred HHhhchhhhHhhHHHHHHHh-CCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 161 QQVTGINIIGLYAPVLLRTL-KLS---ESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~-g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
.....+..+..+.|.++.+. +.. ....+ .......++.+++.++.++++||+|||+.+..+..+..+..+.+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T 2cfq_A 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233344455677776543 221 22234 55666677888899999999999999999887776665554333221
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhh
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 315 (371)
.+.+...+...+.+.+... ..+..+.+.+|.+|++.|+++.++. +....+++.++|.+.|.+.+.
T Consensus 310 -------------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 310 -------------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp -------------CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred -------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 1222222222222322221 1223356779999999999999995 778889999999999999887
Q ss_pred cccchhhHHHHHHHHHH-HHHHHhccCCCCC
Q 017485 316 FKAGIFFFFGGWVIVMT-TFMHLFLPETKNV 345 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 345 (371)
.++...+...+++.+.+ ++.+...||+++.
T Consensus 376 ~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 376 IGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 77544444444443333 3334445554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-20 Score=167.28 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=71.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhH---HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIG---FQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPA 78 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 78 (371)
++++|+++|++.+...+...+++.|++|+++|++..+. .+.+.++|.++++.+++.+.+. .|||+.|++.+++.
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~ 188 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLM 188 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHH
Confidence 56789999999999999999999999999999887776 8899999999999998887764 45999999988887
Q ss_pred HHHHHhhhc
Q 017485 79 SILTVGALF 87 (371)
Q Consensus 79 ~~~~~~~~~ 87 (371)
++..+..++
T Consensus 189 ~~~~~~~~~ 197 (524)
T 2xut_A 189 FVATVFFWL 197 (524)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=135.68 Aligned_cols=184 Identities=14% Similarity=0.089 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 228 (371)
++.+....+..+........+....|.+.+++ .+..+.+ +......++..++.++.|+++||+|||+.+.++.++..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 44455556666666666667778888888888 8888888 889999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 229 SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
+.+.+...... ..+.+..++..++.+.+.+... +....++.|.+|+++|+.++++.+....+|..++|.+
T Consensus 105 ~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 105 VMLFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhhhhc---------cccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88777661100 0334455555666666655443 4555788999999999999999999999999999999
Q ss_pred HHHHHhhcc-cchhhHHHHH-HHHHHHHHHHhccCCCC
Q 017485 309 FLAMLCHFK-AGIFFFFGGW-VIVMTTFMHLFLPETKN 344 (371)
Q Consensus 309 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 344 (371)
.+.+.+..+ |...+...++ ..+..++..++.||++.
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999888887 7665555444 44444555566776543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=132.65 Aligned_cols=155 Identities=13% Similarity=0.014 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
.+..+.+..+.............|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34444455555555566777788998899999999999 88999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
++...... .++.+..++..++.+.+.+... +....++.|.+|+++|+.+.++.+....+|..+++.+.+
T Consensus 106 ~~~~~~~~----------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 106 ALFWPAAE----------IMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccc----------cccHHHHHHHHHHHHhhHHHhh-hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77633211 0345556666666666665443 444678899999999999999999999999999999999
Q ss_pred HHH-hhcc
Q 017485 311 AML-CHFK 317 (371)
Q Consensus 311 ~~~-~~~~ 317 (371)
.+. +..+
T Consensus 175 ~l~~~~~~ 182 (438)
T 3o7q_A 175 SLILSNVP 182 (438)
T ss_dssp HHHHTSSC
T ss_pred HHHhcccc
Confidence 888 4443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.4e-15 Score=124.58 Aligned_cols=174 Identities=15% Similarity=0.106 Sum_probs=131.1
Q ss_pred HHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
.+..+........+....|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 333444445556667778888889999999998 8899999999999999999999999999999999888888777666
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
. ++.+..++...+.+.+.+. ..+....++.|.+|+++|++++++.+....++..++|.+.+.+.+.
T Consensus 85 ~-------------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 85 T-------------SSLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp H-------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred h-------------ccHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4 3445555555555555543 3345567779999999999999999999999999999999998887
Q ss_pred cccchhhHHHHHHHHHHHH-HHHhccCCCC
Q 017485 316 FKAGIFFFFGGWVIVMTTF-MHLFLPETKN 344 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 344 (371)
.+|...+...++..+...+ ..+..||+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 7766555544443333333 4455666543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=121.51 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHH-H-----hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCchHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLR-T-----LKLSESASLLLSAVVTGGIGTVLTIISMILVDK-LGRKILFLVGGI 224 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~ 224 (371)
++......+.....++....+.+.+++ + +|.+..+.+ +......++..++.++.|+++|| +|||+.+..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 444444555555666777777777774 4 899999999 88999999999999999999999 899999999988
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhh--hhhhhHHHHHHHHHHH
Q 017485 225 QMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEI--RSAGQSITVAVCLVFI 302 (371)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~ 302 (371)
+..++.+.+... ++.+..++...+.+.+.+.. .+....++.|.+|++. |+.+.++.+....+|.
T Consensus 94 ~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 94 LIMLGHIVLALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp HHHHHHHHHHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHH
Confidence 888777665542 23444555555556555543 3455677899999988 7778888889999999
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 017485 303 FFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFM 335 (371)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (371)
.++|.+.+.+.+..+|...+...++..+.+.+.
T Consensus 160 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 160 FIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999998888766555554444444333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-14 Score=124.38 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=123.9
Q ss_pred HHHHHHHHhhchhhhHhhHHHHH-HHhC------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CchHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLL-RTLK------LSESASLLLSAVVTGGIGTVLTIISMILVDKL-GRKILFLVGGIQM 226 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~ 226 (371)
..+..+....+++....+++.++ +++| .+..+.+ +......++..++.++.|+++||+ |||+.+..+.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33344444456666777777776 5688 8998888 888899999999999999999999 9999999988888
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchh-hHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHH---HHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEG-YAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSI---TVAVCLVFI 302 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~ 302 (371)
.++.+.+... . +.+..++...+.+.+.+.. .+....++.|.+|++.|+.+.+. .+....+|.
T Consensus 96 ~~~~~~~~~~-------------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 96 CVGHAFLAIF-------------EHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHT-------------SSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------------cccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 7777666553 2 3455555566666665543 34556778999999999876666 888899999
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 017485 303 FFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHL 337 (371)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (371)
.++|.+.+.+.+..+|...+.+.++..+...+..+
T Consensus 162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877776555555444444444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-13 Score=118.34 Aligned_cols=152 Identities=11% Similarity=0.026 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-----CCchhhHHHHHHHHHHHHh
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHG-----GFSEGYAYLILVLVCVYSA 264 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 264 (371)
+..+...++.++|+++.|+++||+|||+.+.++.++..++.+..++.......... ..-..+.+..++..++.++
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 66677889999999999999999999999999999988887776642100000000 0001345566666777776
Q ss_pred hhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccchhhHHHHHHHHHHHHHH
Q 017485 265 GFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF--------KAGIFFFFGGWVIVMTTFMH 336 (371)
Q Consensus 265 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 336 (371)
+.+.. .+....+++|..|++.|+...++.+....++..+++.+........ +|........+..+..++..
T Consensus 139 g~G~~-~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 139 GVGLA-SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHHH-HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHHH-HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 66544 3455688899999999999999998888888888777766554432 13344444455555556666
Q ss_pred HhccCC
Q 017485 337 LFLPET 342 (371)
Q Consensus 337 ~~~~~~ 342 (371)
++.||+
T Consensus 218 ~~~peS 223 (491)
T 4gc0_A 218 YTVPES 223 (491)
T ss_dssp GGSCCC
T ss_pred hcCCCC
Confidence 778886
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.2e-11 Score=102.32 Aligned_cols=161 Identities=14% Similarity=0.024 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
.++......+..+..+.....+.|.++++ +|.+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTG-IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSH-HHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34444444444445556667788888854 899999998 8899999999999999999999999999998877665442
Q ss_pred HHHHHHHHHhhhCCCCCCchhhH-HHHHHHHHHHHhhhccccccceeeeecccCch--hhhhhhhHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYA-YLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL--EIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
...+...... ... ........+.+...+....+. .....+..++ +.++.+.|..+....+|..++|
T Consensus 87 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~ 155 (417)
T 2cfq_A 87 FAPFFIFIFG----------PLLQYNILVGSIVGGIYLGFCFNAG-APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA 155 (417)
T ss_dssp HHHHHHHTHH----------HHHHTTCCHHHHGGGSSTTHHHHTT-HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Confidence 2111110000 000 000111111111111111111 1121222222 3556667777777788889999
Q ss_pred HHHHHHHhhcccchhhHH
Q 017485 307 QTFLAMLCHFKAGIFFFF 324 (371)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ 324 (371)
.+.+.+.+. ++...+..
T Consensus 156 ~l~~~l~~~-~~~~~f~~ 172 (417)
T 2cfq_A 156 SIVGIMFTI-NNQFVFWL 172 (417)
T ss_dssp HHHHHHHHH-CSHHHHTT
T ss_pred HHHHHHHHh-chhHHHHH
Confidence 998888764 44433333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 371 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 43/345 (12%), Positives = 86/345 (24%), Gaps = 29/345 (8%)
Query: 1 MLIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQK 60
++ L G G + K RG + +G LL
Sbjct: 118 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177
Query: 61 IKGGWGWRISLAMAAAPASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEA 120
W + + A L A+ + Q E
Sbjct: 178 WFNDWHAALYMPAFCAILVALFAFAMM------------------RDTPQSCGLPPIEEY 219
Query: 121 ELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRTL 180
+ + + ++ + +Q +L+ I I I ++P L+ +
Sbjct: 220 KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV 279
Query: 181 KLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAE 240
K + + G T++ + DK+ R G M + +
Sbjct: 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--- 336
Query: 241 LGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV 300
+ + ++ + Y L L E+ P + T +
Sbjct: 337 ------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 390
Query: 301 FIFFTAQTFLAMLCHF--KAGIFFFFGGWVIVMTTFMHLFLPETK 343
A + F G F G I+ + + + K
Sbjct: 391 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.82 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.64 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.45 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.9e-28 Score=211.30 Aligned_cols=302 Identities=15% Similarity=-0.008 Sum_probs=197.7
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.|...+...+++.|++|+++|++++++.+.+..+|.++++.++....... .+||+.|++.+++.++.
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~ 196 (447)
T d1pw4a_ 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILV 196 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh--hcccccchhhhhhHHHH
Confidence 5689999999999999999999999999999999999999999999999998877655432 25999999998887776
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. +.+.+|+|+.......++.+ ++..++. .+..+++ ....+...+...+++.++......+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (447)
T d1pw4a_ 197 ALFAFAMMRDTPQSCGLPPIEEYK-----------NDYPDDY---NEKAEQE---LTAKQIFMQYVLPNKLLWYIAIANV 259 (447)
T ss_dssp HHHHHHHCCCSSTTTCCCSCTTTC-----------CC-------------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhcccchhhhhh-----------hhcccch---hhccccc---cchhhHHHHHHHcCchHHHHHHHhh
Confidence 666 55667766532211110000 0000000 0000000 1111111223334445555555566
Q ss_pred HHhhchhhhHhhHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 017485 161 QQVTGINIIGLYAPVLLR-TLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAA 239 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
......+....+.|.+++ ..+.+..+.+ .......+..+++.++.|++.||++|++..........+..........
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 337 (447)
T d1pw4a_ 260 FVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM- 337 (447)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-
T ss_pred hhhhhhhcchhhhhhhcccccccccchhh-hhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh-
Confidence 666667778888888884 5788888888 8888889999999999999999999887655444433333222222110
Q ss_pred hhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHhhccc
Q 017485 240 ELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVF-IFFTAQTFLAMLCHFKA 318 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 318 (371)
....+.+...+..++.+++.. ...+....+..|.+|++.|+++.|+.+..++++ ..++|.+.+.+.+..++
T Consensus 338 -------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~ 409 (447)
T d1pw4a_ 338 -------NPAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 409 (447)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred -------cccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 011334444444444444433 233455567789999999999999999988875 45678889999999886
Q ss_pred chhhHHHHHHHHHH
Q 017485 319 GIFFFFGGWVIVMT 332 (371)
Q Consensus 319 ~~~~~~~~~~~~~~ 332 (371)
...+.....+.+.+
T Consensus 410 ~~~~~~~~~~~~~~ 423 (447)
T d1pw4a_ 410 DGGFMVMIGGSILA 423 (447)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55444443333333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=6.6e-20 Score=156.27 Aligned_cols=298 Identities=9% Similarity=0.033 Sum_probs=176.5
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhCCC--CcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMAPP--KHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
++.+++.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+ .+|+..+........+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~ 179 (417)
T d1pv7a_ 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALI 179 (417)
T ss_dssp HHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc----ccccccccchhhHHHH
Confidence 3456666666555555555544444432 345667777888888899999998887765 3466666665555444
Q ss_pred HH-HhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHH
Q 017485 81 LT-VGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPF 159 (371)
Q Consensus 81 ~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (371)
.. +..+..+|+|+. +++ .++. ..+.++..+....+..+.+..+..........
T Consensus 180 ~~~~~~~~~~~~~~~---~~~-~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T d1pv7a_ 180 LAVLLFFAKTDAPSS---ATV-ANAV----------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVS 233 (417)
T ss_dssp HHHHHHSSCCCSCSS---SCS-SHHH----------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccc---hhh-hhhh----------------------hhhcccccccccccccccccccchhhhhHHHH
Confidence 44 446667777642 111 1110 00111111112222222222222222222222
Q ss_pred HHHhhchhhhHhhHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 160 FQQVTGINIIGLYAPVLLRT----LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
.. ........+.+... .+.+..... .......++..++..+.+++.||.++|+.+..+..+..++.+.+..
T Consensus 234 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 308 (417)
T d1pv7a_ 234 CT----YDVFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HH----HHHHHHHHHHHHTTSSSCHHHHHHHHH-HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH----HHhhhccccccccccccccccchhhhc-ccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc
Confidence 11 12222222222222 222333344 5667777888999999999999999999999888887777665554
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITV-AVCLVFIFFTAQTFLAMLC 314 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 314 (371)
. ++.+...+...+.+.+.+... +....+..|.+|++.|+++.++.. ....++..++|.+.|.+.|
T Consensus 309 ~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~ 374 (417)
T d1pv7a_ 309 A-------------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp C-------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred c-------------cccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334555555555565555443 444577799999999999999865 4567899999999999999
Q ss_pred hcccc-hhhHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 017485 315 HFKAG-IFFFFGGWVIVMTTFMHLFLPETKNVPIEQ 349 (371)
Q Consensus 315 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
..|+. .+++.+++..+..++..+.+++++..+.++
T Consensus 375 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 375 SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 98865 444555555555666667777666655543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=5e-16 Score=133.57 Aligned_cols=182 Identities=14% Similarity=0.059 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 228 (371)
+..+..+.+.++........+....|.+ ++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+.++.++..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3444444444444443334455556654 56899999999 889999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 229 SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
+.++.+...... .+.+..++...+.+.+.+... +....++.|.+|+++|+.++++.+....+|..+++.+
T Consensus 102 ~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 171 (447)
T d1pw4a_ 102 VMLFMGFVPWAT---------SSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 171 (447)
T ss_dssp HHHHHHHCHHHH---------SSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHhhccccchhh---------hhHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHhhcccccccccccccchhhhhhhhh
Confidence 877766542110 223344555555555554443 3445677999999999999999999999999999988
Q ss_pred HHHHHhhcc-cchh-hHHHHHHHHHHHHHHHhccCC
Q 017485 309 FLAMLCHFK-AGIF-FFFGGWVIVMTTFMHLFLPET 342 (371)
Q Consensus 309 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 342 (371)
.+...+..+ |... ++...+..+..++.+.+.+++
T Consensus 172 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 172 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred hhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 887776553 4443 444444445555555555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=8.3e-13 Score=111.63 Aligned_cols=187 Identities=14% Similarity=0.043 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLL-RTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMF 227 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 227 (371)
++.++.+.+..+...........++|.++ ++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.....
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g-~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTG-IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 44466666666666666666677788776 56899999999 89999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCc--hhhhhhhhHHHHHHHHHHHHHH
Q 017485 228 VSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFP--LEIRSAGQSITVAVCLVFIFFT 305 (371)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~~~~~~ 305 (371)
++.......... ..................+....+..... .+..+ .+.+....+........+..++
T Consensus 85 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (417)
T d1pv7a_ 85 VMFAPFFIFIFG---------PLLQYNILVGSIVGGIYLGFCFNAGAPAV-EAFIEKVSRRSNFEFGRARMFGCVGWALG 154 (417)
T ss_dssp HTHHHHHHHTHH---------HHHHTTCHHHHHHTTTTGGGGGTTHHHHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh---------hhHHHHHHHHHHHhhhcccccccchhhcc-cccccchhhhhHHHHHHHhhhhccccccc
Confidence 776666554210 01111112222222222222222221111 12212 2344556667777778888888
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccCCCCCC
Q 017485 306 AQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKNVP 346 (371)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (371)
+.+.+.+.+..++..+........+...+..+..++.+.+.
T Consensus 155 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T d1pv7a_ 155 ASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHhcccccch
Confidence 88888887766666666666666666666666666655444
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